RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2894
(515 letters)
>gnl|CDD|236448 PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.
Length = 502
Score = 950 bits (2459), Expect = 0.0
Identities = 324/513 (63%), Positives = 405/513 (78%), Gaps = 11/513 (2%)
Query: 1 MKINASEISTIIQEQIKNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPGNVF 60
M+IN EIS II++QI+NF+ E+ G VISV DGI ++YGL N M GE+LEFPG V+
Sbjct: 1 MQINPEEISAIIKQQIENFDAEAEVEEVGTVISVGDGIARVYGLDNVMAGELLEFPGGVY 60
Query: 61 GLALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGP 120
G+ALNLE D++GAVILG YE I EGD VK TGRILEVP+G L GRV+N LG PIDGKGP
Sbjct: 61 GIALNLEEDNVGAVILGDYEDIKEGDTVKRTGRILEVPVGEALLGRVVNPLGQPIDGKGP 120
Query: 121 IKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAI 180
I+ T P+E+ APGVI R+SV EPLQTGIKAID+++PIG+GQRELIIGDRQTGK++IAI
Sbjct: 121 IEATETRPVERKAPGVIDRKSVHEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAIAI 180
Query: 181 DIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAY 240
D IINQK K+V CIYVAIGQK S++ + LE++GAM YTI+VAATASD A +Q+++ Y
Sbjct: 181 DTIINQKGKDVICIYVAIGQKASTVAQVVRKLEEHGAMEYTIVVAATASDPAPLQYLAPY 240
Query: 241 SGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLER 300
+GC +GEYF D+GKDAL+VYDDLSKQAVAYRQ+SLLL+RPPGREAYPGD+FYLHSRLLER
Sbjct: 241 AGCAMGEYFMDNGKDALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLER 300
Query: 301 SARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLF 360
+A+++ + GSLTA+PIIETQAGD+SA++PTNVISITDGQIFL+S LF
Sbjct: 301 AAKLSDE-----------LGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESDLF 349
Query: 361 NSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFSSDLDLVTRKQ 420
N+GIRPAIN GISVSRVGGAAQIK +KK++ +R DLAQYREL AF+QF SDLD TR Q
Sbjct: 350 NAGIRPAINVGISVSRVGGAAQIKAMKKVAGTLRLDLAQYRELEAFAQFGSDLDEATRAQ 409
Query: 421 LDRGARVTELLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYKFMKTCQN 480
L+RG R+ ELLKQ QYSPLPV VIL+A G+LDD+ ++K+ FE+ L ++++
Sbjct: 410 LERGQRLVELLKQPQYSPLPVEEQVVILYAGTNGYLDDVPVEKVRRFEAELLAYLRSNHA 469
Query: 481 SILEKIKNVNEFNADIEDSLTTILINFKKSYDA 513
+LE+I+ + + +IE L + FKK++ A
Sbjct: 470 DLLEEIRETKDLSDEIEAKLKAAIEEFKKTFAA 502
>gnl|CDD|223134 COG0056, AtpA, F0F1-type ATP synthase, alpha subunit [Energy
production and conversion].
Length = 504
Score = 821 bits (2124), Expect = 0.0
Identities = 314/511 (61%), Positives = 402/511 (78%), Gaps = 11/511 (2%)
Query: 1 MKINASEISTIIQEQIKNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPGNVF 60
M++N +EIS++I++QI+NF+ E+ G VISV DGI ++ GL N M GE++EFPG V
Sbjct: 1 MQLNPTEISSLIKQQIENFDVEAEVKEVGTVISVGDGIARVSGLENVMAGELVEFPGGVK 60
Query: 61 GLALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGP 120
G+ALNLE DS+GAVILG Y I EGD VK TGRILEVP+G EL GRV++ALG+PIDGKGP
Sbjct: 61 GMALNLEEDSVGAVILGDYSDIKEGDEVKRTGRILEVPVGEELLGRVVDALGNPIDGKGP 120
Query: 121 IKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAI 180
I T P+EK APGV+ R+SV+EPLQTGIKAID+++PIG+GQRELIIGDRQTGK++IAI
Sbjct: 121 IDATKTRPVEKKAPGVMDRKSVNEPLQTGIKAIDALIPIGRGQRELIIGDRQTGKTAIAI 180
Query: 181 DIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAY 240
D IINQK V CIYVAIGQK S++ LE++GAM YTI+VAA+ASDSA +Q+++ Y
Sbjct: 181 DTIINQKGSGVKCIYVAIGQKRSTVANVVRTLEEHGAMDYTIVVAASASDSAPLQYLAPY 240
Query: 241 SGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLER 300
+GC + EYFRD+GKD L+VYDDLSK AVAYR+ISLLL+RPPGREAYPGD+FYLHSRLLER
Sbjct: 241 AGCAMAEYFRDNGKDVLIVYDDLSKHAVAYREISLLLRRPPGREAYPGDVFYLHSRLLER 300
Query: 301 SARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLF 360
+A+++ + GS+TA+PIIETQAGD+SA++PTNVISITDGQIFL++ LF
Sbjct: 301 AAKLSDEL-----------GGGSITALPIIETQAGDVSAYIPTNVISITDGQIFLETDLF 349
Query: 361 NSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFSSDLDLVTRKQ 420
N+GIRPAIN G+SVSRVG AAQIK +KK++ ++R LAQYREL AFSQF SDLD TRKQ
Sbjct: 350 NAGIRPAINVGLSVSRVGSAAQIKAMKKVAGSLRLILAQYRELEAFSQFGSDLDKATRKQ 409
Query: 421 LDRGARVTELLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYKFMKTCQN 480
L+RG R+TELLKQ QYSPL V +IL+A G+LDD+ ++K+ +FE L ++++
Sbjct: 410 LERGKRLTELLKQPQYSPLSVEEQVLILYAGTNGYLDDVPVEKVADFEKELLAYLRSDHK 469
Query: 481 SILEKIKNVNEFNADIEDSLTTILINFKKSY 511
+LE+I+ E + +IE L + FKK++
Sbjct: 470 ELLEEIRTTKELDDEIEAKLKAAIKEFKKTF 500
>gnl|CDD|233211 TIGR00962, atpA, proton translocating ATP synthase, F1 alpha
subunit. The sequences of ATP synthase F1 alpha and
beta subunits are related and both contain a
nucleotide-binding site for ATP and ADP. They have a
common amino terminal domain but vary at the C-terminus.
The beta chain has catalytic activity, while the alpha
chain is a regulatory subunit. The alpha-subunit
contains a highly conserved adenine-specific
noncatalytic nucleotide-binding domain. The conserved
amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton
translocating ATP synthase F1, alpha subunit is
homologous to proton translocating ATP synthase
archaeal/vacuolar(V1), B subunit [Energy metabolism,
ATP-proton motive force interconversion].
Length = 501
Score = 781 bits (2018), Expect = 0.0
Identities = 322/510 (63%), Positives = 403/510 (79%), Gaps = 11/510 (2%)
Query: 2 KINASEISTIIQEQIKNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPGNVFG 61
++ EIS +I+++IKNFN +E G V+SV DGI ++YGL N M GE++EF G V G
Sbjct: 1 QLKLEEISELIKQEIKNFNVDSEAEEVGTVVSVGDGIARVYGLENVMSGELIEFEGGVQG 60
Query: 62 LALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPI 121
+ALNLE DS+GAVI+G Y I EG VK TGRILEVP+G L GRV+NALG+PIDGKGPI
Sbjct: 61 IALNLEEDSVGAVIMGDYSDIREGSTVKRTGRILEVPVGDGLLGRVVNALGEPIDGKGPI 120
Query: 122 KTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAID 181
+ +P+EK+APGVI R+SV EPLQTGIKAID+++PIG+GQRELIIGDRQTGK+++AID
Sbjct: 121 DSDEFSPVEKIAPGVIERKSVHEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAVAID 180
Query: 182 IIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYS 241
IINQK+ +V CIYVAIGQK S++ + LE++GAM YTI+VAATASDSAS+Q+++ Y+
Sbjct: 181 TIINQKDSDVYCIYVAIGQKASTVAQVVRKLEEHGAMAYTIVVAATASDSASLQYLAPYT 240
Query: 242 GCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERS 301
GCT+GEYFRD+GK AL++YDDLSKQAVAYRQISLLL+RPPGREA+PGD+FYLHSRLLER+
Sbjct: 241 GCTMGEYFRDNGKHALIIYDDLSKQAVAYRQISLLLRRPPGREAFPGDVFYLHSRLLERA 300
Query: 302 ARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFN 361
A++N + G GSLTA+PIIETQAGD+SA++PTNVISITDGQIFL+S LFN
Sbjct: 301 AKLNDE------KGG-----GSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESDLFN 349
Query: 362 SGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFSSDLDLVTRKQL 421
SGIRPAIN G+SVSRVGGAAQIK +K+++ ++R +LAQYREL AFSQF+SDLD T+KQL
Sbjct: 350 SGIRPAINVGLSVSRVGGAAQIKAMKQVAGSLRLELAQYRELEAFSQFASDLDEATKKQL 409
Query: 422 DRGARVTELLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYKFMKTCQNS 481
+RG RV ELLKQ QY PL V VILFA KG+LDDI + KI FE +L ++
Sbjct: 410 ERGQRVVELLKQPQYKPLSVEEQVVILFAGTKGYLDDIPVDKIRKFEQALLAYLDANHPD 469
Query: 482 ILEKIKNVNEFNADIEDSLTTILINFKKSY 511
ILE+I + ++E L L NFKK++
Sbjct: 470 ILEEINTTKKLTEELEAKLKEALKNFKKTF 499
>gnl|CDD|183987 PRK13343, PRK13343, F0F1 ATP synthase subunit alpha; Provisional.
Length = 502
Score = 736 bits (1902), Expect = 0.0
Identities = 253/509 (49%), Positives = 346/509 (67%), Gaps = 11/509 (2%)
Query: 1 MKINASEISTIIQEQIKNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPGNVF 60
MK NA E I+++I + + G+V SV DGI + GL +A E+L F G
Sbjct: 1 MKSNADEWLARIRQRIARYEPQPDAREIGRVESVGDGIAFVSGLPDAALDELLRFEGGSR 60
Query: 61 GLALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGP 120
G A NLE + +GAV+L I G V+ TGR+LEVP+G L GRVI+ LG P+DG GP
Sbjct: 61 GFAFNLEEELVGAVLLDDTADILAGTEVRRTGRVLEVPVGDGLLGRVIDPLGRPLDGGGP 120
Query: 121 IKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAI 180
++ P+E+ AP +I R V+EPLQTGIK +D+++PIG+GQRELIIGDRQTGK++IAI
Sbjct: 121 LQATARRPLERPAPAIIERDFVTEPLQTGIKVVDALIPIGRGQRELIIGDRQTGKTAIAI 180
Query: 181 DIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAY 240
D IINQK+ +V C+YVAIGQK S++ + L ++GA+ YT +V A ASD +Q+++ +
Sbjct: 181 DAIINQKDSDVICVYVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPPGLQYLAPF 240
Query: 241 SGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLER 300
+GC I EYFRD G+DAL+VYDDLSK A AYR++SLLL+RPPGREAYPGDIFYLHSRLLER
Sbjct: 241 AGCAIAEYFRDQGQDALIVYDDLSKHAAAYRELSLLLRRPPGREAYPGDIFYLHSRLLER 300
Query: 301 SARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLF 360
+A+++ + GSLTA+PIIET AG++SA++PTN+ISITDGQI+LDS LF
Sbjct: 301 AAKLSPEL-----------GGGSLTALPIIETLAGELSAYIPTNLISITDGQIYLDSDLF 349
Query: 361 NSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFSSDLDLVTRKQ 420
+G RPA++ G+SVSRVGG AQ I+K S +R D AQ+ EL AF++F LD T+KQ
Sbjct: 350 AAGQRPAVDVGLSVSRVGGKAQHPAIRKESGRLRLDYAQFLELEAFTRFGGLLDAGTQKQ 409
Query: 421 LDRGARVTELLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYKFMKTCQN 480
+ RG R+ ELLKQ ++SPL V +L+A+N+G LD + + I FE L + +
Sbjct: 410 ITRGRRLRELLKQPRFSPLSVEEQIALLYALNEGLLDAVPLANIQAFEERLLEKLDARFA 469
Query: 481 SILEKIKNVNEFNADIEDSLTTILINFKK 509
++ +++ E + +L IL +
Sbjct: 470 ALSLALESPRELDEAWLAALEEILREAGE 498
>gnl|CDD|176999 CHL00059, atpA, ATP synthase CF1 alpha subunit.
Length = 485
Score = 655 bits (1692), Expect = 0.0
Identities = 259/492 (52%), Positives = 346/492 (70%), Gaps = 13/492 (2%)
Query: 24 EIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPGNVFGLALNLERDSIGAVILGKYEHIT 83
+I N G V+ V DGI +IYGL M GE++EF G+ALNLE +++G V++G I
Sbjct: 3 KIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEDGTIGIALNLESNNVGVVLMGDGLMIQ 62
Query: 84 EGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVS 143
EG VK TG+I ++P+ GRV+NAL PIDGKG I + IE APG+ISR+SV
Sbjct: 63 EGSSVKATGKIAQIPVSEAYLGRVVNALAKPIDGKGEISASESRLIESPAPGIISRRSVY 122
Query: 144 EPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKIS 203
EPLQTG+ AIDS++PIG+GQRELIIGDRQTGK+++A D I+NQK +NV C+YVAIGQK S
Sbjct: 123 EPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQKGQNVICVYVAIGQKAS 182
Query: 204 SIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDL 263
S+ + L++ GAM YTI+VA TA A++Q+++ Y+G + EYF G+ L++YDDL
Sbjct: 183 SVAQVVTTLQERGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRGRHTLIIYDDL 242
Query: 264 SKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGS 323
SKQA AYRQ+SLLL+RPPGREAYPGD+FYLHSRLLER+A+++ + E GS
Sbjct: 243 SKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGE-----------GS 291
Query: 324 LTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQI 383
+TA+PI+ETQAGD+SA++PTNVISITDGQIFL + LFN+GIRPAIN GISVSRVG AAQI
Sbjct: 292 MTALPIVETQAGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQI 351
Query: 384 KFIKKLSSNIRTDLAQYRELAAFSQFSSDLDLVTRKQLDRGARVTELLKQKQYSPLPVS- 442
K +K+++ ++ +LAQ+ EL AF+QF+SDLD T+ QL RG R+ ELLKQ Q +PL V
Sbjct: 352 KAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEE 411
Query: 443 LIAVILFAINKGFLDDIEIKKILNFESSLYKFMKTCQNSILEKIKNVNEFNADIEDSLTT 502
+A I N G+LD +EI ++ F L ++KT + E I + F + E L
Sbjct: 412 QVATIYTGTN-GYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAEALLKE 470
Query: 503 ILINFKKSYDAK 514
+ + + +
Sbjct: 471 AIQEQLELFLLQ 482
>gnl|CDD|238552 cd01132, F1_ATPase_alpha, F1 ATP synthase alpha, central domain.
The F-ATPase is found in bacterial plasma membranes,
mitochondrial inner membranes and in chloroplast
thylakoid membranes. It has also been found in the
archaea Methanosarcina barkeri. It uses a proton
gradient to drive ATP synthesis and hydrolyzes ATP to
build the proton gradient. The extrinisic membrane
domain, F1, is composed of alpha, beta, gamma, delta and
epsilon subunits with a stoichiometry of 3:3:1:1:1. The
alpha subunit of the F1 ATP synthase can bind
nucleotides, but is non-catalytic.
Length = 274
Score = 521 bits (1343), Expect = 0.0
Identities = 196/285 (68%), Positives = 240/285 (84%), Gaps = 11/285 (3%)
Query: 94 ILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAI 153
I +VP+G L GRV++ALG+PIDGKGPI+TK PIE APG+I R+SV+EPLQTGIKAI
Sbjct: 1 IADVPVGEALLGRVVDALGNPIDGKGPIETKERRPIESKAPGIIPRKSVNEPLQTGIKAI 60
Query: 154 DSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLE 213
D+++PIG+GQRELIIGDRQTGK++IAID IINQK K V CIYVAIGQK S++ + LE
Sbjct: 61 DAMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKGKKVYCIYVAIGQKASTVAQVVKTLE 120
Query: 214 KYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQI 273
++GAM YTI+VAATASD A +Q+++ Y+GC +GEYF D+GK AL++YDDLSKQAVAYRQ+
Sbjct: 121 EHGAMEYTIVVAATASDPAPLQYLAPYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQM 180
Query: 274 SLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQ 333
SLLL+RPPGREAYPGD+FYLHSRLLER+A++N + GSLTA+PIIETQ
Sbjct: 181 SLLLRRPPGREAYPGDVFYLHSRLLERAAKLNDEL-----------GGGSLTALPIIETQ 229
Query: 334 AGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVG 378
AGD+SA++PTNVISITDGQIFL++ LFN GIRPAIN G+SVSRVG
Sbjct: 230 AGDVSAYIPTNVISITDGQIFLETDLFNKGIRPAINVGLSVSRVG 274
>gnl|CDD|132367 TIGR03324, alt_F1F0_F1_al, alternate F1F0 ATPase, F1 subunit alpha.
A small number of taxonomically diverse prokaryotic
species, including Methanosarcina barkeri, have what
appears to be a second ATP synthase, in addition to the
normal F1F0 ATPase in bacteria and A1A0 ATPase in
archaea. These enzymes use ion gradients to synthesize
ATP, and in principle may run in either direction. This
model represents the F1 alpha subunit of this apparent
second ATP synthase.
Length = 497
Score = 521 bits (1344), Expect = 0.0
Identities = 220/493 (44%), Positives = 330/493 (66%), Gaps = 11/493 (2%)
Query: 12 IQEQIKNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPGNVFGLALNLERDSI 71
+ + ++F + G V SV GI +++GL E+L FPG + G+A N++ D +
Sbjct: 12 LDQARESFQPQLTVQEVGTVESVSTGIARVHGLPGVGFEELLRFPGGLLGIAFNVDEDEV 71
Query: 72 GAVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEK 131
G V+LG+Y H+ GD V+ TGR+++VP+G L GRV++ LG P+DG GP+ + PIE+
Sbjct: 72 GVVLLGEYSHLQAGDEVERTGRVMDVPVGDGLLGRVVDPLGRPLDGGGPLASSPRLPIER 131
Query: 132 VAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNV 191
AP ++ R V+ PLQTG+K ID+++PIG+GQRELI+GDRQTGK++IAID I+NQK +NV
Sbjct: 132 PAPPIMDRAPVTVPLQTGLKVIDALIPIGRGQRELILGDRQTGKTAIAIDTILNQKGRNV 191
Query: 192 TCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRD 251
CIY AIGQ+ S++ K L ++GAM YTI+V +D +Q+I+ Y+ +IGE+F +
Sbjct: 192 LCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIAPYAATSIGEHFME 251
Query: 252 HGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVEN 311
G+D L+VYDDL++ A AYR++SLLL+RPPGREA+PGDIFY+HSRLLERS +N
Sbjct: 252 QGRDVLIVYDDLTQHARAYRELSLLLRRPPGREAFPGDIFYVHSRLLERSTHLN------ 305
Query: 312 YTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAG 371
+ G GSLTA+PIIET+A +ISA++PTN+ISITDGQI+L +LF G+ PA++ G
Sbjct: 306 ----EELGG-GSLTALPIIETEAQNISAYIPTNLISITDGQIYLSPTLFELGVLPAVDVG 360
Query: 372 ISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFSSDLDLVTRKQLDRGARVTELL 431
SVSRVGG AQ+ + ++ +++ AQ+ EL F++F + LD TRK ++ G R+ L
Sbjct: 361 KSVSRVGGKAQLAAYRAVAGDLKLAYAQFEELETFARFGARLDENTRKTIEHGRRIRACL 420
Query: 432 KQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYKFMKTCQNSILEKIKNVNE 491
KQ Q SPL V IL A+ G D +++ + ES++ + + + E++++ +
Sbjct: 421 KQTQSSPLTVPQQIAILLALTNGLFDGVDLDAMPEAESAIRAAVTSLPADLRERLQSGKK 480
Query: 492 FNADIEDSLTTIL 504
+ + + + I
Sbjct: 481 LSDEDREQILDIA 493
>gnl|CDD|140212 PTZ00185, PTZ00185, ATPase alpha subunit; Provisional.
Length = 574
Score = 361 bits (927), Expect = e-119
Identities = 196/424 (46%), Positives = 280/424 (66%), Gaps = 32/424 (7%)
Query: 61 GLALNLERDS-IGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPID--- 116
GL NLE+D IG +++ + G V TG++L +P+G + G+V+N LG +
Sbjct: 80 GLVFNLEKDGRIGIILMDNITEVQSGQKVMATGKLLYIPVGAGVLGKVVNPLGHEVPVGL 139
Query: 117 ---GKGPIKTKLT-APIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQ 172
+ ++++ T ++ AP ++SR V+ L TG KA+D+++PIG+GQRELI+GDRQ
Sbjct: 140 LTRSRALLESEQTLGKVDAGAPNIVSRSPVNYNLLTGFKAVDTMIPIGRGQRELIVGDRQ 199
Query: 173 TGKSSIAIDIIINQKNKN--------VTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIV 224
TGK+SIA+ IINQ N V IYV+IGQ+ S++ + LL YGA+ YT ++
Sbjct: 200 TGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVM 259
Query: 225 AATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGRE 284
AATA++ A +Q+++ YSG T+GEYF + G+ L VYDDLSKQAVAYRQISLLL+RPPGRE
Sbjct: 260 AATAAEPAGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQAVAYRQISLLLRRPPGRE 319
Query: 285 AYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTN 344
AYPGD+FYLHSRLLER+A + + GK GS+TA+PI+ET + D++A++ TN
Sbjct: 320 AYPGDVFYLHSRLLERAAML--------SPGK---GGGSVTALPIVETLSNDVTAYIVTN 368
Query: 345 VISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELA 404
VISITDGQI+LD+ LF G RPA+N G+SVSRVG +AQ +K ++ ++ LA+YR+LA
Sbjct: 369 VISITDGQIYLDTKLFTGGQRPAVNIGLSVSRVGSSAQNVAMKAVAGKLKGILAEYRKLA 428
Query: 405 AFSQFSSDLDLVTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKI 464
A S S + V + RGAR L QK S +L++ L+A G+LDD+++
Sbjct: 429 ADSVGGSQVQTVP---MIRGARFVALFNQKNPSFFMNALVS--LYACLNGYLDDVKVNYA 483
Query: 465 LNFE 468
+E
Sbjct: 484 KLYE 487
>gnl|CDD|215651 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family,
nucleotide-binding domain. This family includes the ATP
synthase alpha and beta subunits, the ATP synthase
associated with flagella and the termination factor Rho.
Length = 213
Score = 296 bits (760), Expect = 1e-98
Identities = 99/228 (43%), Positives = 137/228 (60%), Gaps = 15/228 (6%)
Query: 148 TGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKK 207
TGI+AID ++PIGKGQR I G TGK+ + I N K +V +YV IG++ + +
Sbjct: 1 TGIRAIDLLLPIGKGQRIGIFGGSGTGKTVLLGMIARNAK-ADVVEVYVLIGERGREVAE 59
Query: 208 TANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQA 267
L GA+ T++VAAT+ + + ++++ Y+ TI EYFRD GKD L++ D L++ A
Sbjct: 60 FIEELLGEGALKRTVVVAATSDEPPAERYLAPYTALTIAEYFRDQGKDVLLLLDSLTRFA 119
Query: 268 VAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAI 327
A R+ISLLL PPGRE YPG +F +RLLER+ +V GS+TA+
Sbjct: 120 RALREISLLLGEPPGREGYPGSLFSDLARLLERAGKVEGG--------------GSITAL 165
Query: 328 PIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVS 375
P + GDI+ +P N ISITDGQI L L GI PAI+ +SVS
Sbjct: 166 PTVLVPGGDITDPIPDNTISITDGQIVLSRELAERGIYPAIDILLSVS 213
>gnl|CDD|235951 PRK07165, PRK07165, F0F1 ATP synthase subunit alpha; Validated.
Length = 507
Score = 301 bits (774), Expect = 1e-96
Identities = 166/475 (34%), Positives = 258/475 (54%), Gaps = 25/475 (5%)
Query: 30 KVISVFDGICQIYGLSNAMQGEMLEFPGN--VFGLALNLERDSIGAVILGKYEHITEGDI 87
K+ S+FD I ++ G + Q + N V ++ D +I + I D
Sbjct: 4 KIKSIFDYIVEVKGEYDYQQNQFFTLKNNPNVKAFVISATEDKAYLLINNEKGKIKINDE 63
Query: 88 VKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTK-----LTAPIEKVAPGVISRQSV 142
+ +V E G++I+ G+ I + T+ I +A G+++ +++
Sbjct: 64 LIELNNTNKVKTSKEYFGKIIDIDGNIIYPEAQNPLSKKFLPNTSSIFNLAHGLMTVKTL 123
Query: 143 SEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKI 202
+E L TGI AID ++PIGKGQRELIIGDRQTGK+ IA++ IINQKN NV CIYVAIGQK
Sbjct: 124 NEQLYTGIIAIDLLIPIGKGQRELIIGDRQTGKTHIALNTIINQKNTNVKCIYVAIGQKR 183
Query: 203 SSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDD 262
++ + L+++ A+ TII+ A S S Q+++ Y E + D L+V+DD
Sbjct: 184 ENLSRIYETLKEHDALKNTIIIDA-PSTSPYEQYLAPYVAMAHAENI-SYNDDVLIVFDD 241
Query: 263 LSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTG 322
L+K A YR+I+LL +P G+EA+PGD+F+ HS+LLER+ + + N K
Sbjct: 242 LTKHANIYREIALLTNKPVGKEAFPGDMFFAHSKLLERAGK--------FKNRK------ 287
Query: 323 SLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQ 382
++TA+PI++T DI++ + +N+ISITDGQI S LF SG PAI+ +SVSR G + Q
Sbjct: 288 TITALPILQTVDNDITSLISSNIISITDGQIVTSSDLFASGKLPAIDIDLSVSRTGSSVQ 347
Query: 383 IKFIKKLSSNIRTDLAQYRELAAFSQFSSDLDLVTRKQLDRGARVTELLKQKQYSPLPVS 442
K I K++ I Y+ S DL+ T L +G + ++ QK +S
Sbjct: 348 SKTITKVAGEISKIYRAYKRQLKLSMLDYDLNKETSDLLFKGKMIEKMFNQKGFSLYSYR 407
Query: 443 LIAVILFAINKGFLDDI-EIKKILNFESSLYKFMKTCQNSILEKIKNVNEFNADI 496
+ +I I+ G L D+ + +K L+F L + + I KIKN + + ++
Sbjct: 408 FVLLISKLISWGLLKDVKDEQKALDFIDYLIENDPDAK-KIFNKIKNNEDVDDEL 461
>gnl|CDD|224079 COG1157, FliI, Flagellar biosynthesis/type III secretory pathway
ATPase [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 441
Score = 196 bits (500), Expect = 3e-57
Identities = 109/324 (33%), Positives = 166/324 (51%), Gaps = 29/324 (8%)
Query: 85 GDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSE 144
G V TGR L VP+G L GRV++ LG P+DG G P++ P + R+ + E
Sbjct: 86 GAEVVPTGRPLSVPVGDALLGRVLDGLGRPLDGGGLPDGTERRPLDAPPPNPLKRRPIEE 145
Query: 145 PLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSS----IAIDIIINQKNKNVTCIYVA-IG 199
PL TG++AID ++ GKGQR I GKS+ IA +N +A IG
Sbjct: 146 PLDTGVRAIDGLLTCGKGQRIGIFAGSGVGKSTLLGMIA-------RNTEADVNVIALIG 198
Query: 200 QKISSIKK-TANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALV 258
++ +++ L + G + +++V AT+ +SA M+ +A++ TI EYFRD GK L+
Sbjct: 199 ERGREVREFIEKDLGEEG-LKRSVVVVATSDESALMRLKAAFTATTIAEYFRDQGKRVLL 257
Query: 259 VYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVT 318
+ D L++ A+A R+I L PP + YP +F RLLER+ G
Sbjct: 258 IMDSLTRFAMAQREIGLAAGEPPATKGYPPSVFSELPRLLERA-------------GN-- 302
Query: 319 GKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVG 378
G GS+TA + + D++ + V SI DG I L +L +G PAI+ S+SRV
Sbjct: 303 GDKGSITAFYTVLVEGDDMNDPIADEVRSILDGHIVLSRALAEAGHYPAIDVLASISRVM 362
Query: 379 GAAQIKFIKKLSSNIRTDLAQYRE 402
+ +K + +R L++Y E
Sbjct: 363 PQIVSEEHRKAARRLRQLLSRYEE 386
>gnl|CDD|238556 cd01136, ATPase_flagellum-secretory_path_III, Flagellum-specific
ATPase/type III secretory pathway virulence-related
protein. This group of ATPases are responsible for the
export of flagellum and virulence-related proteins. The
bacterial flagellar motor is similar to the F0F1-ATPase,
in that they both are proton driven rotary molecular
devices. However, the main function of the bacterial
flagellar motor is to rotate the flagellar filament for
cell motility. Intracellular pathogens such as
Salmonella and Chlamydia also have proteins which are
similar to the flagellar-specific ATPase, but function
in the secretion of virulence-related proteins via the
type III secretory pathway.
Length = 326
Score = 180 bits (460), Expect = 1e-52
Identities = 109/348 (31%), Positives = 181/348 (52%), Gaps = 32/348 (9%)
Query: 95 LEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAID 154
L VP+G L GRV++A G+P+DGKGP+ ++ P+ + P + R+ + E L TG++AID
Sbjct: 2 LSVPVGDALLGRVLDAFGEPLDGKGPLGKEVRYPLLRTPPNPLKRRPIDEVLPTGVRAID 61
Query: 155 SIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEK 214
++ +GKGQR I GKS++ + +I +V I + IG++ +++ +EK
Sbjct: 62 GLLTVGKGQRLGIFAGSGVGKSTL-LGMIARGTTADVNVIAL-IGERGREVRE---FIEK 116
Query: 215 -YGA--MPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYR 271
G + +++V AT+ +S ++ +AY+ I EYFRD GKD L++ D L++ A+A R
Sbjct: 117 DLGEEGLKRSVVVVATSDESPLLRVKAAYTATAIAEYFRDQGKDVLLLMDSLTRFAMAQR 176
Query: 272 QISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIE 331
+I L PP + YP +F L RLLER+ GS+TA +
Sbjct: 177 EIGLAAGEPPTTKGYPPSVFALLPRLLERAGN---------------SDKGSITAFYTVL 221
Query: 332 TQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSS 391
+ D++ + V SI DG I L +L +G PAI+ S+SR+ A K+ +
Sbjct: 222 VEGDDLNEPIADAVRSILDGHIVLSRALAAAGHYPAIDVLKSISRLMNAVVTPEHKEAAR 281
Query: 392 NIRTDLAQYRE------LAAFSQFSSDLDLVTRKQLDRGARVTELLKQ 433
+R L+ Y+E + A+ + S D + + ++ LKQ
Sbjct: 282 KLRELLSAYQEVEDLIRIGAYKKGS---DPEVDEAIKLLPKIEAFLKQ 326
>gnl|CDD|211826 TIGR03497, FliI_clade2, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively [Cellular processes,
Chemotaxis and motility].
Length = 413
Score = 181 bits (462), Expect = 5e-52
Identities = 113/329 (34%), Positives = 170/329 (51%), Gaps = 21/329 (6%)
Query: 76 LGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPG 135
LG+ E I G +V TGR L + +G L GRV++ LG P+DG+GPI + P++ P
Sbjct: 51 LGEVEGIGPGSLVIATGRPLAIKVGKGLLGRVLDGLGRPLDGEGPIIGEEPYPLDNPPPN 110
Query: 136 VISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQK-NKNVTCI 194
+ R + +PL+TGIKAID ++ IGKGQR I GKS++ I N K + NV +
Sbjct: 111 PLKRPRIRDPLETGIKAIDGLLTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIAL 170
Query: 195 YVAIGQKISSIKK-TANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHG 253
IG++ ++ L + G + +++V AT+ A M+ +A++ I EYFRD G
Sbjct: 171 ---IGERGREVRDFIEKDLGEEG-LKRSVVVVATSDQPALMRLKAAFTATAIAEYFRDQG 226
Query: 254 KDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYT 313
KD L++ D +++ A+A R+I L + PP Y +F L +LLERS
Sbjct: 227 KDVLLMMDSVTRFAMAQREIGLAVGEPPTTRGYTPSVFSLLPKLLERSG----------N 276
Query: 314 NGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGIS 373
+ K GS+T + D++ + V I DG I L L PAI+ S
Sbjct: 277 SQK-----GSITGFYTVLVDGDDMNEPIADAVRGILDGHIVLSRELAAKNHYPAIDVLAS 331
Query: 374 VSRVGGAAQIKFIKKLSSNIRTDLAQYRE 402
VSRV + K+L+ +R LA Y+E
Sbjct: 332 VSRVMNEIVSEEHKELAGKLRELLAVYKE 360
>gnl|CDD|233918 TIGR02546, III_secr_ATP, type III secretion apparatus
H+-transporting two-sector ATPase. [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 422
Score = 180 bits (458), Expect = 2e-51
Identities = 112/383 (29%), Positives = 181/383 (47%), Gaps = 26/383 (6%)
Query: 76 LGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIK--TKLTAPIEKVA 133
LG+ I+ G V TGR L + +G L GRV++ G P+DGKG + T P++
Sbjct: 57 LGELHGISPGSEVIPTGRPLSIRVGEALLGRVLDGFGRPLDGKGELPAGEIETRPLDADP 116
Query: 134 PGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTC 193
P +SRQ + +PL TG++AID ++ G+GQR I GKS++ + +I + +V
Sbjct: 117 PPPMSRQPIDQPLPTGVRAIDGLLTCGEGQRIGIFAGAGVGKSTL-LGMIARGASADV-N 174
Query: 194 IYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHG 253
+ IG++ +++ +++V +T+ + + +AY+ I EYFRD G
Sbjct: 175 VIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLKAAYTATAIAEYFRDQG 234
Query: 254 KDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYT 313
K L++ D L++ A A R+I L PP R YP +F RLLER+
Sbjct: 235 KRVLLMMDSLTRFARALREIGLAAGEPPARGGYPPSVFSSLPRLLERAG----------- 283
Query: 314 NGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGIS 373
G+ GS+TA+ + + D++ + V SI DG I L +L PAI+ S
Sbjct: 284 ----NGEKGSITALYTVLVEGDDMNDPIADEVRSILDGHIVLSRALAERNHYPAIDVLAS 339
Query: 374 VSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAF-----SQFSSDLDLVTRKQLDRGARVT 428
+SRV ++ + +R LA Y+E+ Q SD + T +D+ +
Sbjct: 340 LSRVMSQVVSTEHRRAAGKLRRLLATYKEVELLIRLGEYQPGSDPE--TDDAIDKIDAIR 397
Query: 429 ELLKQKQYSPLPVSLIAVILFAI 451
L+Q P L A+
Sbjct: 398 AFLRQSTDEYSPYEETLEQLHAL 420
>gnl|CDD|163293 TIGR03498, FliI_clade3, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively.
Length = 418
Score = 171 bits (436), Expect = 3e-48
Identities = 125/428 (29%), Positives = 195/428 (45%), Gaps = 52/428 (12%)
Query: 29 GKVISVFDGICQIYGLSNAMQ-GEMLEF--------PGNVFGLALNLERDSIGAVILGKY 79
G+V +V + ++ GLS A++ G+ V G V+L +
Sbjct: 1 GRVTAVTGLLIEVRGLSRAVRLGDRCAIRARDGRPVLAEVVGF-----NGDR--VLLMPF 53
Query: 80 EHITE---GDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTA-PIEKVAPG 135
E + G V L V P GRVINALG+PIDGKGP+ P+ P
Sbjct: 54 EPLEGVGLGCAVFAREGPLAVRPHPSWLGRVINALGEPIDGKGPLPQGERRYPLRASPPP 113
Query: 136 VISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIY 195
+SR V EPL TG++ ID+ +P+ +GQR I GKS++ + +N + +
Sbjct: 114 AMSRARVGEPLDTGVRVIDTFLPLCRGQRLGIFAGSGVGKSTLLSMLA---RNTDADVVV 170
Query: 196 VA-IGQKISSIKKTANLLEKYGA--MPYTIIVAATASDSASMQFISAYSGCTIGEYFRDH 252
+A +G++ +++ L + G + +++V AT+ +S M+ +AY+ I EYFRD
Sbjct: 171 IALVGERGREVREF--LEDDLGEEGLKRSVVVVATSDESPLMRRQAAYTATAIAEYFRDQ 228
Query: 253 GKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENY 312
GKD L++ D +++ A+A R+I L PP Y +F RLLER+
Sbjct: 229 GKDVLLLMDSVTRFAMAQREIGLAAGEPPVARGYTPSVFSELPRLLERA----------- 277
Query: 313 TNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGI 372
G GS+T I + D + V V I DG I LD ++ G PAIN
Sbjct: 278 --GPGAEGKGSITGIFTVLVDGDDHNEPVADAVRGILDGHIVLDRAIAERGRYPAINVLA 335
Query: 373 SVSR----VGGAAQIKFIKKLSSNIRT--DLAQYRELAAFSQFSS-DLDLVTRKQLDRGA 425
SVSR V + K +++L + + + L A+ + S +LD R
Sbjct: 336 SVSRLAPRVWSPEERKLVRRLRALLARYEETEDLIRLGAYRKGSDPELDEAIRLV----P 391
Query: 426 RVTELLKQ 433
++ E L Q
Sbjct: 392 KIYEFLTQ 399
>gnl|CDD|233237 TIGR01026, fliI_yscN, ATPase FliI/YscN family. This family of
ATPases demonstrates extensive homology with ATP
synthase F1, beta subunit. It is a mixture of members
with two different protein functions. The first group is
exemplified by Salmonella typhimurium FliI protein. It
is needed for flagellar assembly, its ATPase activity is
required for flagellation, and it may be involved in a
specialized protein export pathway that proceeds without
signal peptide cleavage. The second group of proteins
function in the export of virulence proteins;
exemplified by Yersinia sp. YscN protein an ATPase
involved in the type III secretory pathway for the
antihost Yops proteins [Energy metabolism, ATP-proton
motive force interconversion].
Length = 440
Score = 170 bits (433), Expect = 1e-47
Identities = 102/344 (29%), Positives = 165/344 (47%), Gaps = 33/344 (9%)
Query: 38 ICQIY--GLSNAMQGEMLEFPGNVFGLALNLERDSIGAVILGKYEHITEGDIVKCTGRIL 95
+C I G + E++ F G L + + E + G V TG L
Sbjct: 47 LCLIERRGSEGRLVAEVVGFNGEFVFL-----------MPYEEVEGVRPGSKVLATGEGL 95
Query: 96 EVPIGPELCGRVINALGDPIDGKG-PIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAID 154
+ +G L GRV++ LG PIDGKG + T + + R + E L TG+++ID
Sbjct: 96 SIKVGDGLLGRVLDGLGKPIDGKGKFLDNVETEGLITAPINPLKRAPIREILSTGVRSID 155
Query: 155 SIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKK-TANLLE 213
++ +GKGQR I GKS++ + +I +V I + IG++ +++ + L
Sbjct: 156 GLLTVGKGQRIGIFAGSGVGKSTL-LGMIARNTEADVNVIAL-IGERGREVREFIEHDLG 213
Query: 214 KYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQI 273
+ G + +++V AT+ S ++ AY I EYFRD GKD L++ D +++ A+A R+I
Sbjct: 214 EEG-LKRSVVVVATSDQSPLLRLKGAYVATAIAEYFRDQGKDVLLLMDSVTRFAMAQREI 272
Query: 274 SLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQ 333
L PP + Y +F RLLER+ +GK GS+TA + +
Sbjct: 273 GLAAGEPPATKGYTPSVFSTLPRLLERAG----------ASGK-----GSITAFYTVLVE 317
Query: 334 AGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRV 377
D++ + +V I DG I L +L G PAI+ S+SR+
Sbjct: 318 GDDMNEPIADSVRGILDGHIVLSRALAQRGHYPAIDVLASISRL 361
>gnl|CDD|213817 TIGR03496, FliI_clade1, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively [Cellular processes,
Chemotaxis and motility].
Length = 411
Score = 168 bits (428), Expect = 5e-47
Identities = 94/307 (30%), Positives = 148/307 (48%), Gaps = 37/307 (12%)
Query: 82 ITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQS 141
+ G V L +P+G L GRVI+ LG P+DGKGP+ P+ + R
Sbjct: 57 LRPGARVFPLEGPLRLPVGDSLLGRVIDGLGRPLDGKGPLDAGERVPLYAPPINPLKRAP 116
Query: 142 VSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSI--------AIDIIINQKNKNVTC 193
+ EPL G++AI+ ++ +G+GQR I GKS++ D+++
Sbjct: 117 IDEPLDVGVRAINGLLTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVV--------- 167
Query: 194 IYVA-IGQKISSIKKTA--NLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFR 250
V IG++ +K+ L E+ + +++VAATA +S M+ +A+ I EYFR
Sbjct: 168 --VGLIGERGREVKEFIEDILGEE--GLARSVVVAATADESPLMRLRAAFYATAIAEYFR 223
Query: 251 DHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVE 310
D GKD L++ D L++ A+A R+I+L + PP + YP +F +L+ER+
Sbjct: 224 DQGKDVLLLMDSLTRFAMAQREIALAIGEPPATKGYPPSVFAKLPQLVERA--------- 274
Query: 311 NYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINA 370
G GS+TA + + D + +I DG I L L G PAI+
Sbjct: 275 ----GNGEEGKGSITAFYTVLVEGDDQQDPIADAARAILDGHIVLSRELAEQGHYPAIDI 330
Query: 371 GISVSRV 377
S+SRV
Sbjct: 331 LASISRV 337
>gnl|CDD|180762 PRK06936, PRK06936, type III secretion system ATPase; Provisional.
Length = 439
Score = 162 bits (412), Expect = 1e-44
Identities = 107/365 (29%), Positives = 173/365 (47%), Gaps = 28/365 (7%)
Query: 76 LGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPG 135
LG+ I+ V TG + +V +G L GRV++ LG P DG P + P+ AP
Sbjct: 76 LGEMYGISSNTEVSPTGTMHQVGVGEHLLGRVLDGLGQPFDGGHPPEPAAWYPVYADAPA 135
Query: 136 VISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIY 195
+SR+ + PL G++ ID ++ G+GQR I GKS++ +I ++ V
Sbjct: 136 PMSRRLIETPLSLGVRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLI---RSAEVDVTV 192
Query: 196 VA-IGQKISSIKK--TANLLEKYGAMPYTIIVAATASDSASMQFI-SAYSGCTIGEYFRD 251
+A IG++ +++ ++L E+ + ++V AT SD SM+ + + +I EYFRD
Sbjct: 193 LALIGERGREVREFIESDLGEE--GLRKAVLVVAT-SDRPSMERAKAGFVATSIAEYFRD 249
Query: 252 HGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVEN 311
GK L++ D +++ A A R+I L PP R YP +F RL+ER+ +
Sbjct: 250 QGKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQ-------- 301
Query: 312 YTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAG 371
GS+TA+ + + D++ V SI DG I L L + PAI+
Sbjct: 302 -------SDKGSITALYTVLVEGDDMTEPVADETRSILDGHIILSRKLAAANHYPAIDVL 354
Query: 372 ISVSRVGGAAQIKFIKKLSSNIRTDLAQYRE---LAAFSQFSSDLDLVTRKQLDRGARVT 428
S SRV K K + +R LA+Y E L ++ D + ++R +
Sbjct: 355 RSASRVMNQIVSKEHKTWAGRLRELLAKYEEVELLLQIGEYQKGQDKEADQAIERIGAIR 414
Query: 429 ELLKQ 433
L+Q
Sbjct: 415 GFLRQ 419
>gnl|CDD|180712 PRK06820, PRK06820, type III secretion system ATPase; Validated.
Length = 440
Score = 162 bits (412), Expect = 1e-44
Identities = 105/369 (28%), Positives = 173/369 (46%), Gaps = 27/369 (7%)
Query: 82 ITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQS 141
+ G V G + +V +G +L GR+++ LG PIDG P+ + ++ P ++RQ
Sbjct: 84 LRCGQWVTPLGHMHQVQVGADLAGRILDGLGAPIDGGPPLTGQWR-ELDCPPPSPLTRQP 142
Query: 142 VSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQK 201
+ + L TGI+AID I+ G+GQR I GKS++ + ++ +V + IG++
Sbjct: 143 IEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTL-LGMLCADSAADVM-VLALIGER 200
Query: 202 ISSIKK--TANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVV 259
+++ L + A T++V AT+ A + + TI EYFRD GK L++
Sbjct: 201 GREVREFLEQVLTPE--ARARTVVVVATSDRPALERLKGLSTATTIAEYFRDRGKKVLLM 258
Query: 260 YDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTG 319
D L++ A A R+I L PP ++P +F RLLER+
Sbjct: 259 ADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTG---------------NS 303
Query: 320 KTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGG 379
GS+TA + + D++ V V S+ DG I L L +G PAI+ SVSR+
Sbjct: 304 DRGSITAFYTVLVEGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMP 363
Query: 380 AAQIKFIKKLSSNIRTDLAQYRE---LAAFSQFSSDLDLVTRKQLDRGARVTELLKQK-- 434
++ +R LA Y+E L ++ + DL + L R + L+Q
Sbjct: 364 QIVSAGQLAMAQKLRRMLACYQEIELLVRVGEYQAGEDLQADEALQRYPAICAFLQQDHS 423
Query: 435 QYSPLPVSL 443
+ + L +L
Sbjct: 424 ETAHLETTL 432
>gnl|CDD|181092 PRK07721, fliI, flagellum-specific ATP synthase; Validated.
Length = 438
Score = 162 bits (411), Expect = 2e-44
Identities = 106/337 (31%), Positives = 172/337 (51%), Gaps = 32/337 (9%)
Query: 81 HITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQ 140
I G +V+ TG+ LEV +G L G+V++ALG+P+DG K ++ P + R
Sbjct: 77 EIAPGCLVEATGKPLEVKVGSGLIGQVLDALGEPLDGSALPKGLAPVSTDQDPPNPLKRP 136
Query: 141 SVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQ 200
+ EP++ G++AIDS++ +GKGQR I GKS++ + +I + ++ I + IG+
Sbjct: 137 PIREPMEVGVRAIDSLLTVGKGQRVGIFAGSGVGKSTL-MGMIARNTSADLNVIAL-IGE 194
Query: 201 KISSIKKTANLLEK-YGA--MPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDAL 257
+ +++ +E+ G + +I+V AT+ A M+ AY+ I EYFRD G + +
Sbjct: 195 RGREVRE---FIERDLGPEGLKRSIVVVATSDQPALMRIKGAYTATAIAEYFRDQGLNVM 251
Query: 258 VVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKV 317
++ D +++ A+A R+I L + PP + Y +F + +LLER+ TN
Sbjct: 252 LMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTG----------TNAS- 300
Query: 318 TGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRV 377
GS+TA + D++ + V I DG LD L N G PAIN SVSRV
Sbjct: 301 ----GSITAFYTVLVDGDDMNEPIADTVRGILDGHFVLDRQLANKGQYPAINVLKSVSRV 356
Query: 378 GGAAQIKFIKKLSSNIRTDLAQ-YRELAAFSQFSSDL 413
+ + S + A +REL + Q S DL
Sbjct: 357 --------MNHIVSPEHKEAANRFRELLSTYQNSEDL 385
>gnl|CDD|169656 PRK09099, PRK09099, type III secretion system ATPase; Provisional.
Length = 441
Score = 159 bits (403), Expect = 2e-43
Identities = 123/426 (28%), Positives = 201/426 (47%), Gaps = 40/426 (9%)
Query: 29 GKVISVFDGICQIYGLSNAM---------QGEMLEFPGNVFGLALNLERDSIGAVILGKY 79
GKV+ V + ++ GL + G +L+ V G + RD G+
Sbjct: 26 GKVVEVIGTLLRVSGLDVTLGELCELRQRDGTLLQ-RAEVVGFS----RDVALLSPFGEL 80
Query: 80 EHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISR 139
++ G V GR L VP+GP L GRVI+ LG+PIDG GP+ P+ P +SR
Sbjct: 81 GGLSRGTRVIGLGRPLSVPVGPALLGRVIDGLGEPIDGGGPLDCDELVPVIAAPPDPMSR 140
Query: 140 QSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIG 199
+ V PL TG++ +D ++ +G+GQR I GKS++ + + +V I IG
Sbjct: 141 RMVEAPLPTGVRIVDGLMTLGEGQRMGIFAPAGVGKSTL-MGMFARGTQCDVNVI-ALIG 198
Query: 200 QKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVV 259
++ +++ L+ M +++V AT+ S+ + +AY I EYFRD G L++
Sbjct: 199 ERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAYVATAIAEYFRDRGLRVLLM 258
Query: 260 YDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTG 319
D L++ A A R+I L PP R +P +F RLLER+ G
Sbjct: 259 MDSLTRFARAQREIGLAAGEPPARRGFPPSVFAELPRLLERAGM---------------G 303
Query: 320 KTGSLTAIPII--ETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRV 377
+TGS+TA+ + E ++G S + V I DG + L + PAI+ S+SRV
Sbjct: 304 ETGSITALYTVLAEDESG--SDPIAEEVRGILDGHMILSREIAARNQYPAIDVLGSLSRV 361
Query: 378 GGAAQIKFIKKLSSNIRTDLAQYRELAAFSQ---FSSDLDLVTRKQLDRGARVTELLKQK 434
+ + + +R LA++RE+ Q + + D V + + + + + L Q+
Sbjct: 362 MPQVVPREHVQAAGRLRQLLAKHREVETLLQVGEYRAGSDPVADEAIAKIDAIRDFLSQR 421
Query: 435 --QYSP 438
+YS
Sbjct: 422 TDEYSD 427
>gnl|CDD|181439 PRK08472, fliI, flagellum-specific ATP synthase; Validated.
Length = 434
Score = 154 bits (392), Expect = 8e-42
Identities = 106/327 (32%), Positives = 157/327 (48%), Gaps = 27/327 (8%)
Query: 58 NVFGLALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDG 117
G+ + +E++ G E GD V + L +P+G L GRV++ LG PIDG
Sbjct: 53 ECLGMVVVIEKEQFGISPFSFIEGFKIGDKVFISKEGLNIPVGRNLLGRVVDPLGRPIDG 112
Query: 118 KGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSS 177
KG I + API K + R + E G+K+ID ++ GKGQ+ I GKS+
Sbjct: 113 KGAIDYERYAPIMKAPIAAMKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKST 172
Query: 178 IAIDIIINQKNKNVTCIYVAI----GQKISS-IKKTANLLEKYGAMPYTIIVAATASDSA 232
+ I+ K VA+ G++I I+K G + T+IV AT+ DS
Sbjct: 173 LMGMIV---KGCLAPIKVVALIGERGREIPEFIEKNLG-----GDLENTVIVVATSDDSP 224
Query: 233 SMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFY 292
M+ A+ ++ EYF++ G D L + D +++ A+A R+I L L PP + YP +
Sbjct: 225 LMRKYGAFCAMSVAEYFKNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSVLS 284
Query: 293 LHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQ 352
L +L+ER+ GK GK GS+TA + + D+S + SI DG
Sbjct: 285 LLPQLMERA-------------GKEEGK-GSITAFFTVLVEGDDMSDPIADQSRSILDGH 330
Query: 353 IFLDSSLFNSGIRPAINAGISVSRVGG 379
I L L + GI P IN S SRV
Sbjct: 331 IVLSRELTDFGIYPPINILNSASRVMN 357
>gnl|CDD|180526 PRK06315, PRK06315, type III secretion system ATPase; Provisional.
Length = 442
Score = 151 bits (383), Expect = 1e-40
Identities = 107/365 (29%), Positives = 173/365 (47%), Gaps = 24/365 (6%)
Query: 76 LGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDG--KGP-IKTKLTAPIEKV 132
LG+ ++ V TG L + G L GRV+N LG+PID KGP T PI +
Sbjct: 75 LGELTGVSPSSEVIPTGLPLHIRAGNGLLGRVLNGLGEPIDTETKGPLENVDETYPIFRA 134
Query: 133 APGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVT 192
P + R + L TG++ ID ++ + +GQR I GKSS+ I N + +V
Sbjct: 135 PPDPLHRAKLRTILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVN 194
Query: 193 CIYVAIGQKISSIKK-TANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRD 251
I + IG++ +++ L + G M ++IV +T+ S+ ++ +AY G I EYFRD
Sbjct: 195 VIAL-IGERGREVREFIEGDLGEEG-MKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRD 252
Query: 252 HGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVEN 311
GK +++ D +++ A A R++ L PP R Y +F +LLERS +
Sbjct: 253 QGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERSGASDK----- 307
Query: 312 YTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAG 371
G++TA + D++ V V SI DG I L ++L + PAI+
Sbjct: 308 ----------GTITAFYTVLVAGDDMNEPVADEVKSILDGHIVLSNALAQAYHYPAIDVL 357
Query: 372 ISVSRVGGAAQIKFIKKLSSNIRTDLAQYRE---LAAFSQFSSDLDLVTRKQLDRGARVT 428
S+SR+ A + +++ R LA+Y+ L ++ D +D ++
Sbjct: 358 ASISRLLTAIVPEEQRRIIGKAREVLAKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLN 417
Query: 429 ELLKQ 433
LKQ
Sbjct: 418 RFLKQ 422
>gnl|CDD|136438 PRK07594, PRK07594, type III secretion system ATPase SsaN;
Validated.
Length = 433
Score = 145 bits (368), Expect = 1e-38
Identities = 108/406 (26%), Positives = 182/406 (44%), Gaps = 24/406 (5%)
Query: 44 LSNAMQGEMLEF-PGNVFGLALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPE 102
L GE+ PG + + + G V R +VP+G
Sbjct: 37 LPGVFMGELCCIKPGEELAEVVGINGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEA 96
Query: 103 LCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKG 162
L GRVI+ G P+DG+ + + + P + RQ +++PL TGI+AIDS+ G+G
Sbjct: 97 LLGRVIDGFGRPLDGR-ELPDVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEG 155
Query: 163 QRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTI 222
QR I GKS++ + ++ N + + + V IG++ +++ + +
Sbjct: 156 QRVGIFSAPGVGKSTL-LAMLCNAPDADSN-VLVLIGERGREVREFIDFTLSEETRKRCV 213
Query: 223 IVAATASDSASMQFISAYS-GCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPP 281
IV AT SD +++ + A TI E+FRD+GK +++ D L++ A A R+I+L
Sbjct: 214 IVVAT-SDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETA 272
Query: 282 GREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFV 341
YP +F RLLER+ G+ GS+TA + + D++ +
Sbjct: 273 VSGEYPPGVFSALPRLLERTG---------------MGEKGSITAFYTVLVEGDDMNEPL 317
Query: 342 PTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYR 401
V S+ DG I L L G PAI+ ++SRV ++L++ +R LA Y+
Sbjct: 318 ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRCLALYQ 377
Query: 402 E---LAAFSQFSSDLDLVTRKQLDRGARVTELLKQKQYSPLPVSLI 444
E L ++ +D T K +D + L+Q + L+
Sbjct: 378 EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELL 423
>gnl|CDD|181599 PRK08972, fliI, flagellum-specific ATP synthase; Validated.
Length = 444
Score = 140 bits (355), Expect = 1e-36
Identities = 92/285 (32%), Positives = 147/285 (51%), Gaps = 23/285 (8%)
Query: 97 VPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSI 156
+P+G L GRVI+ +G+P+DG GPI T A +SR+ ++EPL G++AI+++
Sbjct: 97 LPVGMSLLGRVIDGVGNPLDGLGPIYTDQRASRHSPPINPLSRRPITEPLDVGVRAINAM 156
Query: 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTC--IYVA-IGQKISSIKK-TANLL 212
+ +GKGQR + GKS +++ + T I V +G++ +K+ +L
Sbjct: 157 LTVGKGQRMGLFAGSGVGKS-----VLLGMMTRGTTADVIVVGLVGERGREVKEFIEEIL 211
Query: 213 EKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQ 272
+ G +++VAA A S M+ + TI EYFRD G + L++ D L++ A A R+
Sbjct: 212 GEEG-RARSVVVAAPADTSPLMRLKGCETATTIAEYFRDQGLNVLLLMDSLTRYAQAQRE 270
Query: 273 ISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIET 332
I+L + PP + YP +F L+ER+ NG GS+TA + T
Sbjct: 271 IALAVGEPPATKGYPPSVFAKLPALVERAG-----------NG--GPGQGSITAFYTVLT 317
Query: 333 QAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRV 377
+ D+ + +I DG I L L +SG PAI+ S+SRV
Sbjct: 318 EGDDLQDPIADASRAILDGHIVLSRELADSGHYPAIDIEASISRV 362
>gnl|CDD|180875 PRK07196, fliI, flagellum-specific ATP synthase; Validated.
Length = 434
Score = 139 bits (352), Expect = 2e-36
Identities = 100/353 (28%), Positives = 165/353 (46%), Gaps = 25/353 (7%)
Query: 96 EVPIGPELCGRVINALGDPIDGKGPI--KTKLTAPIEKVAPGVISRQSVSEPLQTGIKAI 153
E+ IG GRVIN LG+P+DGKG + T L + ++ P + R++V PL G+ AI
Sbjct: 89 ELLIGDSWLGRVINGLGEPLDGKGQLGGSTPLQQQLPQIHP--LQRRAVDTPLDVGVNAI 146
Query: 154 DSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLE 213
+ ++ IGKGQR ++ GKS + + +I +V + + IG++ +K+
Sbjct: 147 NGLLTIGKGQRVGLMAGSGVGKS-VLLGMITRYTQADVVVVGL-IGERGREVKEFIEHSL 204
Query: 214 KYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQI 273
+ M +++VAA A +S M+ + I Y+RD G D L++ D L++ A+A R+I
Sbjct: 205 QAAGMAKSVVVAAPADESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLTRYAMAQREI 264
Query: 274 SLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQ 333
+L L PP + YP F + RL E + N G++TAI + +
Sbjct: 265 ALSLGEPPATKGYPPSAFSIIPRLAESAG-----------NSS---GNGTMTAIYTVLAE 310
Query: 334 AGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSR----VGGAAQIKFIKKL 389
D + ++ DG I L L +G PAI+ S+SR V G+ Q K L
Sbjct: 311 GDDQQDPIVDCARAVLDGHIVLSRKLAEAGHYPAIDISQSISRCMSQVIGSQQAKAASLL 370
Query: 390 SSNIRTDLAQYRELAAFSQFSSDLDLVTRKQLDRGARVTELLKQKQYSPLPVS 442
D + L + + D + + + +T+ L+Q+ P S
Sbjct: 371 KQCY-ADYMAIKPLIPLGGYVAGADPMADQAVHYYPAITQFLRQEVGHPALFS 422
>gnl|CDD|238555 cd01135, V_A-ATPase_B, V/A-type ATP synthase (non-catalytic)
subunit B. These ATPases couple ATP hydrolysis to the
build up of a H+ gradient, but V-type ATPases do not
catalyze the reverse reaction. The Vacuolar (V-type)
ATPase is found in the membranes of vacuoles, the golgi
apparatus and in other coated vesicles in eukaryotes.
Archaea have a protein which is similar in sequence to
V-ATPases, but functions like an F-ATPase (called
A-ATPase). A similar protein is also found in a few
bacteria. This subfamily consists of the non-catalytic
beta subunit.
Length = 276
Score = 135 bits (342), Expect = 3e-36
Identities = 87/288 (30%), Positives = 135/288 (46%), Gaps = 18/288 (6%)
Query: 94 ILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAI 153
L+VP+ ++ GR+ N G PIDG I + I ++R E +QTGI AI
Sbjct: 1 TLKVPVSEDMLGRIFNGSGKPIDGGPEILAEEYLDINGPPINPVARIYPEEMIQTGISAI 60
Query: 154 DSIVPIGKGQRELIIGDRQTGKSSIAIDII----INQKNKNVTCIYVAIGQKISSIKKTA 209
D + + +GQ+ I + +A I + + +N ++ A+G + +
Sbjct: 61 DGMNTLVRGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFK 120
Query: 210 NLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFR-DHGKDALVVYDDLSKQAV 268
+ E+ GA+ ++ A+D + I+ T EY + GK LV+ D++ A
Sbjct: 121 DDFEETGALERVVLFLNLANDPTIERIITPRMALTTAEYLAYEKGKHVLVILTDMTNYAE 180
Query: 269 AYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIP 328
A R+IS + PGR YPG Y+++ L R G+V G+ GS+T IP
Sbjct: 181 ALREISAAREEVPGRRGYPG---YMYTDLATIYERA----------GRVEGRNGSITQIP 227
Query: 329 IIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSR 376
I+ DI+ +P IT+GQI LD L N GI P IN S+SR
Sbjct: 228 ILTMPNDDITHPIPDLTGYITEGQIVLDRQLHNRGIYPPINVLPSLSR 275
>gnl|CDD|235666 PRK06002, fliI, flagellum-specific ATP synthase; Validated.
Length = 450
Score = 139 bits (352), Expect = 4e-36
Identities = 107/389 (27%), Positives = 172/389 (44%), Gaps = 42/389 (10%)
Query: 29 GKVISVFDGICQIYGLSN-AMQGEMLEFP---GNVFGLALNLERDSIGAVILGKYEHITE 84
G V V ++ GLS G+ + G G + ++ D + I
Sbjct: 28 GTVSEVTASHYRVRGLSRFVRLGDFVAIRADGGTHLGEVVRVDPDGVTVKPFEPRIEIGL 87
Query: 85 GDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKT-KLTAPIEKVAPGVISRQSVS 143
GD V G L + P GRVINALG+PIDG GP+ I+ AP ++R V
Sbjct: 88 GDAVFRKGP-LRIRPDPSWKGRVINALGEPIDGLGPLAPGTRPMSIDATAPPAMTRARVE 146
Query: 144 EPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSI--------AIDIIINQKNKNVTCIY 195
L+TG++ ID P+ GQR I GKS++ A D T +
Sbjct: 147 TGLRTGVRVIDIFTPLCAGQRIGIFAGSGVGKSTLLAMLARADAFD----------TVVI 196
Query: 196 VAIGQKISSIKKTANLLEKY--GAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHG 253
+G++ +++ LE + + V AT+ +S M+ ++ + I EYFRD G
Sbjct: 197 ALVGERGREVRE---FLEDTLADNLKKAVAVVATSDESPMMRRLAPLTATAIAEYFRDRG 253
Query: 254 KDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYT 313
++ L++ D +++ A A R+++L PP YP +F RLLER+
Sbjct: 254 ENVLLIVDSVTRFAHAAREVALAAGEPPVARGYPPSVFSELPRLLERA------------ 301
Query: 314 NGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGIS 373
G GS+T I + D + V ++ DG I LD ++ G PA++ S
Sbjct: 302 -GPGAEGGGSITGIFSVLVDGDDHNDPVADSIRGTLDGHIVLDRAIAEQGRYPAVDPLAS 360
Query: 374 VSRVGGAAQIKFIKKLSSNIRTDLAQYRE 402
+SR+ A +KL S +++ +A++ E
Sbjct: 361 ISRLARHAWTPEQRKLVSRLKSMIARFEE 389
>gnl|CDD|168181 PRK05688, fliI, flagellum-specific ATP synthase; Validated.
Length = 451
Score = 138 bits (349), Expect = 8e-36
Identities = 90/297 (30%), Positives = 151/297 (50%), Gaps = 38/297 (12%)
Query: 91 TGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGI 150
TGR+ P+G + GRV++ G +DGKGP+K + P++ ++R +SEPL GI
Sbjct: 100 TGRL---PMGMSMLGRVLDGAGRALDGKGPMKAEDWVPMDGPTINPLNRHPISEPLDVGI 156
Query: 151 KAIDSIVPIGKGQRELIIGDRQTGKSSI--------AIDIIINQKNKNVTCIYVA-IGQK 201
++I+ ++ +G+GQR + GKS + DII+ V IG++
Sbjct: 157 RSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEADIIV-----------VGLIGER 205
Query: 202 ISSIKK-TANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVY 260
+K+ ++L + G + +++VA+ A D+ M+ +A I EYFRD GK+ L++
Sbjct: 206 GREVKEFIEHILGEEG-LKRSVVVASPADDAPLMRLRAAMYCTRIAEYFRDKGKNVLLLM 264
Query: 261 DDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGK 320
D L++ A A R+I+L + PP + YP +F +L+ER+ N + G
Sbjct: 265 DSLTRFAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAG-----------NAEPGG- 312
Query: 321 TGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRV 377
GS+TA + ++ D + + + DG I L L G PAI+ S+SRV
Sbjct: 313 -GSITAFYTVLSEGDDQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRV 368
>gnl|CDD|200071 TIGR01041, ATP_syn_B_arch, ATP synthase archaeal, B subunit.
Archaeal ATP synthase shares extensive sequence
similarity with eukaryotic and prokaryotic V-type
(H+)-ATPases [Energy metabolism, ATP-proton motive force
interconversion].
Length = 458
Score = 134 bits (340), Expect = 1e-34
Identities = 83/300 (27%), Positives = 133/300 (44%), Gaps = 18/300 (6%)
Query: 83 TEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSV 142
G V+ TG L++P+ ++ GR++N G+PIDG I I +R+
Sbjct: 62 PTGTKVRFTGETLKLPVSEDMLGRILNGSGEPIDGGPEIVPDERRDINGAPINPYAREYP 121
Query: 143 SEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDII----INQKNKNVTCIYVAI 198
E +QTGI AID + + +GQ+ I + +A I + + ++ A+
Sbjct: 122 EEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAM 181
Query: 199 GQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFR-DHGKDAL 257
G E+ GA+ ++ A D A + ++ T EY + L
Sbjct: 182 GITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAFEKDMHVL 241
Query: 258 VVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKV 317
V+ D++ A R+IS + PGR YPG ++ + + ER+ G+V
Sbjct: 242 VILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERA-------------GRV 288
Query: 318 TGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRV 377
GK GS+T +PI+ DI+ +P IT+GQI L L GI P IN S+SR+
Sbjct: 289 KGKKGSITQMPILTMPGDDITHPIPDLTGYITEGQIVLSRELHRKGIYPPINVLPSLSRL 348
>gnl|CDD|224078 COG1156, NtpB, Archaeal/vacuolar-type H+-ATPase subunit B [Energy
production and conversion].
Length = 463
Score = 132 bits (334), Expect = 1e-33
Identities = 86/299 (28%), Positives = 132/299 (44%), Gaps = 18/299 (6%)
Query: 83 TEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSV 142
T+G V+ TG L++P+ +L GR+ N G PIDG I + I +R
Sbjct: 67 TKGTTVRFTGETLKIPVSEDLLGRIFNGSGKPIDGGPEIVPEDRLDINGAPINPYARIYP 126
Query: 143 SEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQK----NKNVTCIYVAI 198
E +QTGI AID + + +GQ+ I + +A I + ++ A+
Sbjct: 127 EEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNELAAQIARQATVDGEEEEFAVVFAAM 186
Query: 199 GQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFR-DHGKDAL 257
G + E+ GA+ ++ A D A + I+ T+ EY + L
Sbjct: 187 GITHEEALFFMDEFEETGALDRAVLFLNLADDPAVERIITPRMALTVAEYLAFEKDMHVL 246
Query: 258 VVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKV 317
V+ D++ A R+IS + PGR YPG Y+++ L R G++
Sbjct: 247 VILTDMTNYCEALREISAAREEVPGRRGYPG---YMYTDLATIYERA----------GRI 293
Query: 318 TGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSR 376
G+ GS+T IPI+ DI+ +P IT+GQI L L GI P IN S+SR
Sbjct: 294 RGRKGSITQIPILTMPGDDITHPIPDLTGYITEGQIVLSRDLHRKGIYPPINVLPSLSR 352
>gnl|CDD|236166 PRK08149, PRK08149, ATP synthase SpaL; Validated.
Length = 428
Score = 130 bits (328), Expect = 4e-33
Identities = 93/325 (28%), Positives = 148/325 (45%), Gaps = 23/325 (7%)
Query: 87 IVKCTGRILEVPIGPELCGRVINALG---DPIDGKGPIKTKLTA-PIEKVAPGVISRQSV 142
++K TG+ L V +G L G V++ G + D + I+ P R+ +
Sbjct: 72 VLKPTGKPLSVWVGEALLGAVLDPTGKIVERFDAPPTVGPISEERVIDVAPPSYAERRPI 131
Query: 143 SEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKI 202
EPL TG++AID ++ G GQR I GK+S+ ++++I +V I + IG++
Sbjct: 132 REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTSL-MNMLIEHSEADVFVIGL-IGERG 189
Query: 203 SSIKKTANLLEKYGAMPYTIIVAATASDSASMQFI-SAYSGCTIGEYFRDHGKDALVVYD 261
+ + L ++V AT SD +S+ +A T+ EYFRD GK ++ D
Sbjct: 190 REVTEFVESLRASSRREKCVLVYAT-SDFSSVDRCNAALVATTVAEYFRDQGKRVVLFID 248
Query: 262 DLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKT 321
+++ A A R ++L P R YP +F RLLER
Sbjct: 249 SMTRYARALRDVALAAGELPARRGYPASVFDSLPRLLERPGAT---------------LA 293
Query: 322 GSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAA 381
GS+TA + ++ + + + SI DG I+L L G PAI+ SVSRV G
Sbjct: 294 GSITAFYTVLLESEEEPDPIGDEIRSILDGHIYLSRKLAAKGHYPAIDVLKSVSRVFGQV 353
Query: 382 QIKFIKKLSSNIRTDLAQYRELAAF 406
++L++ R L + EL F
Sbjct: 354 TDPKHRQLAAAFRKLLTRLEELQLF 378
>gnl|CDD|211621 TIGR01039, atpD, ATP synthase, F1 beta subunit. The sequences of
ATP synthase F1 alpha and beta subunits are related and
both contain a nucleotide-binding site for ATP and ADP.
They have a common amino terminal domain but vary at the
C-terminus. The beta chain has catalytic activity, while
the alpha chain is a regulatory subunit. Proton
translocating ATP synthase, F1 beta subunit is
homologous to proton translocating ATP synthase
archaeal/vacuolar(V1), A subunit [Energy metabolism,
ATP-proton motive force interconversion].
Length = 461
Score = 127 bits (321), Expect = 6e-32
Identities = 89/317 (28%), Positives = 147/317 (46%), Gaps = 17/317 (5%)
Query: 63 ALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIK 122
A +L D++ + +G + + G V TG + VP+G E GR+ N LG+PID KGPI
Sbjct: 44 AQHLGDDTVRTIAMGSTDGLVRGLEVIDTGAPISVPVGKETLGRIFNVLGEPIDEKGPIP 103
Query: 123 TKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDI 182
K PI + AP + + E L+TGIK ID + P KG + + G GK+ + ++
Sbjct: 104 AKERWPIHRKAPSFEEQSTKVEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQEL 163
Query: 183 IIN-QKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYS 241
I N K ++ +G++ + +++ G + T +V ++ + A +
Sbjct: 164 INNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVALT 223
Query: 242 GCTIGEYFRDH-GKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLER 300
G T+ EYFRD G+D L+ D++ + A ++S LL R P Y + L ER
Sbjct: 224 GLTMAEYFRDEQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGELQER 283
Query: 301 SARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLF 360
+ KTGS+T++ + A D++ P + D L +
Sbjct: 284 IT---------------STKTGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRKIA 328
Query: 361 NSGIRPAINAGISVSRV 377
GI PA++ S SR+
Sbjct: 329 ELGIYPAVDPLDSTSRL 345
>gnl|CDD|235251 PRK04196, PRK04196, V-type ATP synthase subunit B; Provisional.
Length = 460
Score = 124 bits (313), Expect = 8e-31
Identities = 88/306 (28%), Positives = 140/306 (45%), Gaps = 32/306 (10%)
Query: 83 TEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSV 142
+ V+ TG L++P+ ++ GR+ + LG PIDG I + I ++R+
Sbjct: 64 LKDTKVRFTGEPLKLPVSEDMLGRIFDGLGRPIDGGPEIIPEKRLDINGAPINPVAREYP 123
Query: 143 SEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQK----NKNVTCIYVAI 198
E +QTGI AID + + +GQ+ I + +A I K +N ++ A+
Sbjct: 124 EEFIQTGISAIDGLNTLVRGQKLPIFSGSGLPHNELAAQIARQAKVLGEEENFAVVFAAM 183
Query: 199 GQKISSIKKTANL----LEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFR-DHG 253
G + AN E+ GA+ +++ A D A + ++ T EY + G
Sbjct: 184 GIT----FEEANFFMEDFEETGALERSVVFLNLADDPAIERILTPRMALTAAEYLAFEKG 239
Query: 254 KDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRL---LERSARVNIKYVE 310
LV+ D++ A R+IS + PGR YPG Y+++ L ER+
Sbjct: 240 MHVLVILTDMTNYCEALREISAAREEVPGRRGYPG---YMYTDLATIYERA--------- 287
Query: 311 NYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINA 370
G++ GK GS+T IPI+ DI+ +P IT+GQI L L GI P I+
Sbjct: 288 ----GRIKGKKGSITQIPILTMPDDDITHPIPDLTGYITEGQIVLSRELHRKGIYPPIDV 343
Query: 371 GISVSR 376
S+SR
Sbjct: 344 LPSLSR 349
>gnl|CDD|236351 PRK08927, fliI, flagellum-specific ATP synthase; Validated.
Length = 442
Score = 123 bits (310), Expect = 2e-30
Identities = 87/287 (30%), Positives = 130/287 (45%), Gaps = 44/287 (15%)
Query: 105 GRVINALGDPIDGKGPIKTKLTA-PIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQ 163
GRV+NALG+PIDGKGP+ P+ P SR V EPL G++A+++ + +GQ
Sbjct: 100 GRVVNALGEPIDGKGPLPQGPVPYPLRAPPPPAHSRARVGEPLDLGVRALNTFLTCCRGQ 159
Query: 164 RELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYG------- 216
R I GKS + ++ +N IG L+ + G
Sbjct: 160 RMGIFAGSGVGKSVL-----LSMLARNADADVSVIG-----------LIGERGREVQEFL 203
Query: 217 -------AMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVA 269
+ +++V AT+ + A M+ +AY I EYFRD GKD L + D +++ A+A
Sbjct: 204 QDDLGPEGLARSVVVVATSDEPALMRRQAAYLTLAIAEYFRDQGKDVLCLMDSVTRFAMA 263
Query: 270 YRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPI 329
R+I L PP + Y +F RLLER+ G G++T +
Sbjct: 264 QREIGLSAGEPPTTKGYTPTVFAELPRLLERA-------------GPGPIGEGTITGLFT 310
Query: 330 IETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSR 376
+ D + V V I DG I ++ ++ G PAIN SVSR
Sbjct: 311 VLVDGDDHNEPVADAVRGILDGHIVMERAIAERGRYPAINVLKSVSR 357
>gnl|CDD|102061 PRK05922, PRK05922, type III secretion system ATPase; Validated.
Length = 434
Score = 122 bits (308), Expect = 2e-30
Identities = 97/363 (26%), Positives = 158/363 (43%), Gaps = 28/363 (7%)
Query: 81 HITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQ 140
++ G V R + + L GRV++ G+P+DGK + P+ P +SRQ
Sbjct: 76 YVALGAEVLPLRRPPSLHLSDHLLGRVLDGFGNPLDGKEQLPKTHLKPLFSSPPSPMSRQ 135
Query: 141 SVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNK-NVTCIYVAIG 199
+ E TGIKAID+ + +GKGQR + + +GKSS+ I K+ NV + IG
Sbjct: 136 PIQEIFPTGIKAIDAFLTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIAL---IG 192
Query: 200 QKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVV 259
++ +++ ++ A TII+A+ A ++A + I+ + TI EYFRD G L +
Sbjct: 193 ERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGRAAMTIAEYFRDQGHRVLFI 252
Query: 260 YDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTG 319
D LS+ A ++++L Y +F+ S ER+ N K
Sbjct: 253 MDSLSRWIAALQEVALARGETLSAHHYAASVFHHVSEFTERAG----------NNDK--- 299
Query: 320 KTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGG 379
GS+TA+ I F + S+ DG FL + + P I+ S+SR
Sbjct: 300 --GSITALYAILHYPNHPDIFTDY-LKSLLDGHFFL-TPQGKALASPPIDILTSLSRSAR 355
Query: 380 AAQIKFIKKLSSNIRTDLAQYRE---LAAFSQFSSDLDLVTRKQLDRGARVTELLKQKQY 436
+ + +R+ L Y E + + D LDR ++ +KQ
Sbjct: 356 QLALPHHYAAAEELRSLLKAYHEALDIIQLGAYVPGQD----AHLDRAVKLLPSIKQFLS 411
Query: 437 SPL 439
PL
Sbjct: 412 QPL 414
>gnl|CDD|181182 PRK07960, fliI, flagellum-specific ATP synthase; Validated.
Length = 455
Score = 117 bits (296), Expect = 1e-28
Identities = 89/306 (29%), Positives = 149/306 (48%), Gaps = 26/306 (8%)
Query: 96 EVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDS 155
++P+GP L GRV++ G P+DG T T + + R + L TG++AI++
Sbjct: 109 QLPLGPALLGRVLDGSGKPLDGLPAPDTGETGALITPPFNPLQRTPIEHVLDTGVRAINA 168
Query: 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVA-IGQKISSIKK-TANLLE 213
++ +G+GQR + GKS + + ++ +V I V IG++ +K N+L
Sbjct: 169 LLTVGRGQRMGLFAGSGVGKS-VLLGMMARYTQADV--IVVGLIGERGREVKDFIENILG 225
Query: 214 KYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQI 273
G ++++AA A S ++ A I E FRD G+ L++ D L++ A+A R+I
Sbjct: 226 AEG-RARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREI 284
Query: 274 SLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQ 333
+L + PP + YP +F L+ER+ NG G GS+TA + T+
Sbjct: 285 ALAIGEPPATKGYPPSVFAKLPALVERAG-----------NGISGG--GSITAFYTVLTE 331
Query: 334 AGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGA-------AQIKFI 386
D + + +I DG I L L +G PAI+ S+SR A A+++
Sbjct: 332 GDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALIDEQHYARVRQF 391
Query: 387 KKLSSN 392
K+L S+
Sbjct: 392 KQLLSS 397
>gnl|CDD|233244 TIGR01040, V-ATPase_V1_B, V-type (H+)-ATPase V1, B subunit. This
models eukaryotic vacuolar (H+)-ATPase that is
responsible for acidifying cellular compartments. This
enzyme shares extensive sequence similarity with
archaeal ATP synthase [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 466
Score = 117 bits (296), Expect = 2e-28
Identities = 86/301 (28%), Positives = 133/301 (44%), Gaps = 27/301 (8%)
Query: 91 TGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGI 150
TG IL P+ ++ GRV N G PID P+ + I +R E +QTGI
Sbjct: 70 TGDILRTPVSEDMLGRVFNGSGKPIDKGPPVLAEDYLDINGQPINPYARIYPEEMIQTGI 129
Query: 151 KAIDSIVPIGKGQRELIIGD-------------RQTGKSSIAIDIIINQKNKNVTCIYVA 197
AID + I +GQ+ I RQ G + + + N ++ A
Sbjct: 130 SAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAA 189
Query: 198 IGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFR-DHGKDA 256
+G + + + E+ G+M + A+D + I+ T EY K
Sbjct: 190 MGVNMETARFFKQDFEENGSMERVCLFLNLANDPTIERIITPRLALTTAEYLAYQCEKHV 249
Query: 257 LVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGK 316
LV+ D+S A A R++S + PGR +PG ++ + + ER+ G+
Sbjct: 250 LVILTDMSSYADALREVSAAREEVPGRRGFPGYMYTDLATIYERA-------------GR 296
Query: 317 VTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSR 376
V G+ GS+T IPI+ DI+ +P IT+GQI++D L N I P IN S+SR
Sbjct: 297 VEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSR 356
Query: 377 V 377
+
Sbjct: 357 L 357
>gnl|CDD|132348 TIGR03305, alt_F1F0_F1_bet, alternate F1F0 ATPase, F1 subunit beta.
A small number of taxonomically diverse prokaryotic
species have what appears to be a second ATP synthase,
in addition to the normal F1F0 ATPase in bacteria and
A1A0 ATPase in archaea. These enzymes use ion gradients
to synthesize ATP, and in principle may run in either
direction. This model represents the F1 beta subunit of
this apparent second ATP synthase.
Length = 449
Score = 116 bits (291), Expect = 5e-28
Identities = 92/377 (24%), Positives = 171/377 (45%), Gaps = 28/377 (7%)
Query: 59 VFGLALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGK 118
V + L+ + + L + + G V+ +G L+ P+G R+ + G+ ID +
Sbjct: 35 VVEVLSQLDAHHVRGIALTPTQGLARGMPVRDSGGPLKAPVGKPTLSRMFDVFGNTIDRR 94
Query: 119 GPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSI 178
P K + + P + R S SE +TGIKAID +VP+ +G + + G GK+ +
Sbjct: 95 EPPKDVEWRSVHQAPPTLTRRSSKSEVFETGIKAIDVLVPLERGGKAGLFGGAGVGKTVL 154
Query: 179 AIDIIIN--QKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQF 236
++I N +++ V+ I+ IG++ ++ +++ G + T++V ++ +F
Sbjct: 155 LTEMIHNMVGQHQGVS-IFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARF 213
Query: 237 ISAYSGCTIGEYFR-DHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHS 295
++ T+ EYFR D +D L++ D++ + A ++S LL + P R Y + +
Sbjct: 214 RVGHTALTMAEYFRDDEKQDVLLLIDNIFRFIQAGSEVSGLLGQMPSRLGYQPTLGTELA 273
Query: 296 RLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFL 355
L ER A T G++T+I + A D + + S + L
Sbjct: 274 ELEERIA---------------TTSDGAITSIQAVYVPADDFTDPAAVHTFSHLSASLVL 318
Query: 356 DSSLFNSGIRPAINAGISVSRVGGAAQI-KFIKKLSSNIRTDLAQYRELA------AFSQ 408
+ G+ PAI+ S S++ + + L+ +R LAQY EL Q
Sbjct: 319 SRKRASEGLYPAIDPLQSTSKMATPGIVGERHYDLAREVRQTLAQYEELKDIIAMLGLEQ 378
Query: 409 FS-SDLDLVTR-KQLDR 423
S D +V R ++L+R
Sbjct: 379 LSREDRRVVNRARRLER 395
>gnl|CDD|238553 cd01133, F1-ATPase_beta, F1 ATP synthase beta subunit,
nucleotide-binding domain. The F-ATPase is found in
bacterial plasma membranes, mitochondrial inner
membranes and in chloroplast thylakoid membranes. It has
also been found in the archaea Methanosarcina barkeri.
It uses a proton gradient to drive ATP synthesis and
hydrolyzes ATP to build the proton gradient. The
extrinisic membrane domain, F1, is composed of alpha,
beta, gamma, delta and epsilon subunits with a
stoichiometry of 3:3:1:1:1. The beta subunit of ATP
synthase is catalytic.
Length = 274
Score = 111 bits (281), Expect = 1e-27
Identities = 83/289 (28%), Positives = 141/289 (48%), Gaps = 25/289 (8%)
Query: 95 LEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAID 154
+ VP+GPE GR+ N LG+PID +GPIKTK T PI + AP + + + +E L+TGIK ID
Sbjct: 2 ISVPVGPETLGRIFNVLGEPIDERGPIKTKKTWPIHREAPEFVEQSTKTEILETGIKVID 61
Query: 155 SIVPIGKGQRELIIGDRQTGKSSIAIDIIIN-QKNKNVTCIYVAIGQKISSIKKTANLLE 213
+ P KG + + G GK+ + +++I N K ++ +G++ + ++
Sbjct: 62 LLAPYAKGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMK 121
Query: 214 KYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDH-GKDALVVYDDLSKQAVAYRQ 272
+ G + T +V ++ + A +G T+ EYFRD G+D L+ D++ + A +
Sbjct: 122 ESGVLSKTALVYGQMNEPPGARARVALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSE 181
Query: 273 ISLLLKRPPGREAY-P---GDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIP 328
+S LL R P Y P ++ L R+ + K GS+T++
Sbjct: 182 VSALLGRMPSAVGYQPTLATEMGALQERI-------------------TSTKKGSITSVQ 222
Query: 329 IIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRV 377
+ A D++ P + D L ++ GI PA++ S SR+
Sbjct: 223 AVYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRI 271
>gnl|CDD|183615 PRK12597, PRK12597, F0F1 ATP synthase subunit beta; Provisional.
Length = 461
Score = 113 bits (285), Expect = 4e-27
Identities = 88/342 (25%), Positives = 158/342 (46%), Gaps = 34/342 (9%)
Query: 73 AVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKV 132
A+ LG + GD V+ TG +EVP+G + GR+++ LG+P+DG P+ + PI
Sbjct: 54 AIALGSTSGLARGDEVRNTGGPIEVPVGEAVLGRLLDVLGEPLDGGPPLPAEERRPIHST 113
Query: 133 APGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIIN-QKNKNV 191
P + + + +E L+TGIK ID + PI KG + + G GK+ + +++I N K +
Sbjct: 114 IPPLAEQDTSTEILETGIKVIDLLCPIAKGGKTGLFGGAGVGKTVLMMELIFNISKQHSG 173
Query: 192 TCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRD 251
+ ++ +G++ + + +++ G + T++V ++ + +G TI EY RD
Sbjct: 174 SSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVLTGLTIAEYLRD 233
Query: 252 H-GKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYP----GDIFYLHSRLLERSARVNI 306
+D L+ D++ + A ++S LL R P R Y ++ L R+
Sbjct: 234 EEKEDVLLFIDNIFRFVQAGSEVSGLLGRMPSRVGYQPTLASEVAELQERI--------- 284
Query: 307 KYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRP 366
+ K GS+T+I + A D++ + S D + L + GI P
Sbjct: 285 ----------ASTKNGSITSIQAVYVPADDLTDPAAVAIFSHLDSTVVLSRAQAAKGIYP 334
Query: 367 AINAGISVSR-----VGGAAQIKFIKKLSSNIRTDLAQYREL 403
AI+ S S V G + ++ L +Y+EL
Sbjct: 335 AIDPLASSSNLLDPLVVGERHYDAAIE----VKRILQRYKEL 372
>gnl|CDD|223133 COG0055, AtpD, F0F1-type ATP synthase, beta subunit [Energy
production and conversion].
Length = 468
Score = 113 bits (285), Expect = 4e-27
Identities = 94/366 (25%), Positives = 164/366 (44%), Gaps = 35/366 (9%)
Query: 27 NQGKVISV--------FDGICQIYGLSNAMQGEMLEFPGNVFGLALNLERDSIGAVILGK 78
N+GKV+ V F ++ + NA++ + V +A +L + + + +G
Sbjct: 2 NKGKVVQVIGPVVDVEFPEEDELPEIYNALEVQNGNQGTLVLEVAQHLGDNVVRTIAMGS 61
Query: 79 YEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTK--LTAPIEKVAPGV 136
+ + G V TG+ + VP+G GR+ N LG+PID KGPIK + PI + AP
Sbjct: 62 TDGLVRGLEVIDTGKPISVPVGKGTLGRIFNVLGEPIDEKGPIKAEDFEKWPIHRKAPSF 121
Query: 137 ISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIIN-QKNKNVTCIY 195
+ +E L+TGIK ID + P KG + + G GK+ + ++I N K ++
Sbjct: 122 EELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVF 181
Query: 196 VAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDH-GK 254
+G++ + +++ G + T +V ++ + A +G T+ EYFRD G+
Sbjct: 182 AGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARMRVALTGLTMAEYFRDEEGQ 241
Query: 255 DALVVYDDLSKQAVAYRQISLLLKRPPGREAY----PGDIFYLHSRLLERSARVNIKYVE 310
D L+ D++ + A ++S LL R P Y ++ L R+
Sbjct: 242 DVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERI------------- 288
Query: 311 NYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINA 370
+ K GS+T++ + A D++ P + D L + GI PA++
Sbjct: 289 ------TSTKKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAALGIYPAVDP 342
Query: 371 GISVSR 376
S SR
Sbjct: 343 LDSTSR 348
>gnl|CDD|180696 PRK06793, fliI, flagellum-specific ATP synthase; Validated.
Length = 432
Score = 110 bits (276), Expect = 4e-26
Identities = 108/398 (27%), Positives = 179/398 (44%), Gaps = 36/398 (9%)
Query: 14 EQIKNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPGNVFGLALNLERDSIGA 73
++ F T GKV SV + G + NV + +E+++
Sbjct: 8 QKWNTFIETPFYTKVGKVHSVQEQFFVAKGPKAKIGDVCFVGEHNVLCEVIAIEKENNML 67
Query: 74 VILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPID---GKGPI-KTKLTAPI 129
+ + E + GD V + +P G L G+V++A G+ ++ P+ K KL AP
Sbjct: 68 LPFEQTEKVCYGDSVTLIAEDVVIPRGNHLLGKVLSANGEVLNEEAENIPLQKIKLDAP- 126
Query: 130 EKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQK-N 188
R+ +++ +TGIK+IDS++ IG GQ+ I GKS++ I N K +
Sbjct: 127 ---PIHAFEREEITDVFETGIKSIDSMLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKAD 183
Query: 189 KNVTCIYVAIGQKISS-IKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGE 247
NV + G+++ I+K L E+ M +++V AT+ +S MQ +A +I E
Sbjct: 184 INVISLVGERGREVKDFIRK--ELGEE--GMRKSVVVVATSDESHLMQLRAAKLATSIAE 239
Query: 248 YFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHS---RLLERSARV 304
YFRD G + L++ D +++ A A R + + +K P G + S +LLERS +
Sbjct: 240 YFRDQGNNVLLMMDSVTRFADARRSVDIAVKELP----IGGKTLLMESYMKKLLERSGKT 295
Query: 305 NIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGI 364
+ GS+T I + D++ VP I DG I L L
Sbjct: 296 ---------------QKGSITGIYTVLVDGDDLNGPVPDLARGILDGHIVLKRELATLSH 340
Query: 365 RPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRE 402
PAI+ SVSR+ +L++ +R L+ Y+E
Sbjct: 341 YPAISVLDSVSRIMEEIVSPNHWQLANEMRKILSIYKE 378
>gnl|CDD|238554 cd01134, V_A-ATPase_A, V/A-type ATP synthase catalytic subunit A.
These ATPases couple ATP hydrolysis to the build up of a
H+ gradient, but V-type ATPases do not catalyze the
reverse reaction. The Vacuolar (V-type) ATPase is found
in the membranes of vacuoles, the golgi apparatus and in
other coated vesicles in eukaryotes. Archaea have a
protein which is similar in sequence to V-ATPases, but
functions like an F-ATPase (called A-ATPase). A similar
protein is also found in a few bacteria.
Length = 369
Score = 95.8 bits (239), Expect = 2e-21
Identities = 81/271 (29%), Positives = 123/271 (45%), Gaps = 48/271 (17%)
Query: 128 PIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQ- 186
P+ + P V + +EPL TG + +D++ P+ KG I G GK+ +I Q
Sbjct: 124 PVRQPRP-VKEKLPPNEPLLTGQRVLDTLFPVVKGGTAAIPGPFGCGKT------VIQQS 176
Query: 187 --KNKNV-TCIYVAIGQ-------------KISSIKKTANLLEKYGAMPYTIIVAATASD 230
K N IYV G+ +++ L+++ T+++A T++
Sbjct: 177 LSKYSNSDIVIYVGCGERGNEMTEVLEEFPELTDPVTGEPLMKR------TVLIANTSNM 230
Query: 231 SASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDI 290
+ + S Y+G TI EYFRD G + ++ D S+ A A R+IS L+ PG E YP
Sbjct: 231 PVAAREASIYTGITIAEYFRDMGYNVALMADSTSRWAEALREISGRLEEMPGEEGYPA-- 288
Query: 291 FYLHSRL---LERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVIS 347
YL +RL ER+ RV G G+ GS+T + + GD S V +
Sbjct: 289 -YLGARLASFYERAGRV-------KCLGS-PGREGSVTIVGAVSPPGGDFSEPVTQATLR 339
Query: 348 ITDGQIF--LDSSLFNSGIRPAINAGISVSR 376
I Q+F LD L P+IN IS S+
Sbjct: 340 IV--QVFWGLDKKLAQRRHFPSINWLISYSK 368
>gnl|CDD|238540 cd01120, RecA-like_NTPases, RecA-like NTPases. This family includes
the NTP binding domain of F1 and V1 H+ATPases, DnaB and
related helicases as well as bacterial RecA and related
eukaryotic and archaeal recombinases. This group also
includes bacterial conjugation proteins and related DNA
transfer proteins involved in type II and type IV
secretion.
Length = 165
Score = 90.6 bits (225), Expect = 2e-21
Identities = 51/198 (25%), Positives = 84/198 (42%), Gaps = 37/198 (18%)
Query: 164 RELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTII 223
L+ G +GK+++A+ + +N K +YV I ++I + + GA+ II
Sbjct: 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLII 60
Query: 224 VAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGR 283
V ATA D A+ + +S E R+ G D L++ D+L++ A R+I R
Sbjct: 61 VFATADDPAAARLLS------KAERLRERGGDDLIILDELTRLVRALREI---------R 105
Query: 284 EAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISA---- 339
E YPG++ LLER+ + G +T I ++ +GD
Sbjct: 106 EGYPGELDEELRELLERARK------------------GGVTVIFTLQVPSGDKGDPRLT 147
Query: 340 FVPTNVISITDGQIFLDS 357
N+ I D I L
Sbjct: 148 RGAQNLEDIADTVIVLSR 165
>gnl|CDD|224077 COG1155, NtpA, Archaeal/vacuolar-type H+-ATPase subunit A [Energy
production and conversion].
Length = 588
Score = 95.0 bits (237), Expect = 1e-20
Identities = 83/278 (29%), Positives = 129/278 (46%), Gaps = 38/278 (13%)
Query: 116 DGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGK 175
G+ ++ T P+ K P V + PL TG + ID++ P+ KG + G +GK
Sbjct: 179 GGEVDVQMMTTWPVRKARP-VKRKLPPEIPLVTGQRVIDTLFPVAKGGTAAVPGPFGSGK 237
Query: 176 SSIAIDIIINQKNKNV---TCIYVAIGQKISSIKKTANLLE-------KYGA--MPYTII 223
+ + + +K IYV G++ + + T L E G M T++
Sbjct: 238 T-----VSQHTLSKLADGDIVIYVGCGERGN--EMTEVLQEFPELKDPNTGQPLMDRTVL 290
Query: 224 VAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGR 283
+A T++ + + S Y+G TI EY+RD G D ++ D S+ A A R+IS L+ PG
Sbjct: 291 IANTSNMPVAAREASIYTGITIAEYYRDMGYDVALMADSTSRWAEALREISGRLEEMPGE 350
Query: 284 EAYPGDIFYLHSRL---LERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAF 340
E YP YL SRL ER+ R V + + + GS+T I + GD S
Sbjct: 351 EGYPA---YLGSRLAEFYERAGR-----VRLVSPEE---RFGSITVIGAVSPPGGDFSEP 399
Query: 341 VPTNVISITDGQIF--LDSSLFNSGIRPAINAGISVSR 376
V N + + ++F LD++L N P+IN S S
Sbjct: 400 VTQNTLRVV--RVFWALDAALANRRHFPSINWLNSYSL 435
>gnl|CDD|130115 TIGR01043, ATP_syn_A_arch, ATP synthase archaeal, A subunit.
Archaeal ATP synthase shares extensive sequence
similarity with eukaryotic and prokaryotic V-type
(H+)-ATPases [Energy metabolism, ATP-proton motive force
interconversion].
Length = 578
Score = 92.5 bits (230), Expect = 7e-20
Identities = 82/276 (29%), Positives = 118/276 (42%), Gaps = 48/276 (17%)
Query: 116 DGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGK 175
DG IK P+ P + PL TG + +D+ PI KG I G +GK
Sbjct: 177 DGDEEIKMYQKWPVRIPRP-YKEKLPPEVPLITGQRILDTFFPIAKGGTAAIPGPFGSGK 235
Query: 176 S----SIA----IDIIINQKNKNVTCIYVAIGQKISSIK------------KTANLLEKY 215
+ +A DI++ Y+ G++ + + KT L
Sbjct: 236 TVTQHQLAKWSDADIVV----------YIGCGERGNEMTDVLEEFPELKDPKTGKPL--- 282
Query: 216 GAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISL 275
M T+++A T++ + + S Y+G TI EYFRD G D ++ D S+ A A R+IS
Sbjct: 283 --MERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEAMREISG 340
Query: 276 LLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAG 335
L+ PG E YP YL SRL E R V+ + GS+T I + G
Sbjct: 341 RLEEMPGEEGYPA---YLASRLAEFYERAG--RVKTLGG---EERVGSVTVIGAVSPPGG 392
Query: 336 DISAFVPTNVISITDGQIF--LDSSLFNSGIRPAIN 369
D S V N + I ++F LD+ L PAIN
Sbjct: 393 DFSEPVTQNTLRIV--KVFWALDADLAQRRHFPAIN 426
>gnl|CDD|236447 PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated.
Length = 463
Score = 86.0 bits (214), Expect = 5e-18
Identities = 34/78 (43%), Positives = 44/78 (56%)
Query: 85 GDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSE 144
G V TG + VP+G GR+ N LG+PID KGPI + PI + AP + +E
Sbjct: 67 GMEVIDTGAPISVPVGKATLGRIFNVLGEPIDEKGPIGAEERWPIHRKAPSFEELSTKTE 126
Query: 145 PLQTGIKAIDSIVPIGKG 162
L+TGIK ID + P KG
Sbjct: 127 ILETGIKVIDLLAPYAKG 144
Score = 29.3 bits (67), Expect = 5.8
Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 16/139 (11%)
Query: 239 AYSGCTIGEYFRDH-GKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRL 297
A +G T+ EYFRD G+D L+ D++ + A ++S LL R P Y + +L
Sbjct: 222 ALTGLTMAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQL 281
Query: 298 LERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDS 357
ER + K GS+T++ + A D++ P + D L
Sbjct: 282 QERIT---------------STKKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSR 326
Query: 358 SLFNSGIRPAINAGISVSR 376
+ GI PA++ S SR
Sbjct: 327 QIAELGIYPAVDPLDSTSR 345
>gnl|CDD|215848 pfam00306, ATP-synt_ab_C, ATP synthase alpha/beta chain, C terminal
domain.
Length = 110
Score = 78.1 bits (193), Expect = 1e-17
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 13/114 (11%)
Query: 387 KKLSSNIRTDLAQYRELAAFSQF--SSDLDLVTRKQLDRGARVTELLKQKQYSPLPVSLI 444
K+++ ++ +LAQYREL A Q L + L+R R+ E LKQ QYSP PV
Sbjct: 1 KQVAGQLKLELAQYRELQAIVQLVGEDALSEEDKLTLERARRIEEFLKQNQYSPEPVEKQ 60
Query: 445 AVILF-------AINKGFLDDIEIKKILNFESSLYKFMKTCQNSILEKIKNVNE 491
V + A+ +G DD+ + + K + EK K + +
Sbjct: 61 YVPVEETIDLFYALLRGKFDDLPEDALYRIGTIDLAKYKD----LEEKFKKLKK 110
>gnl|CDD|235248 PRK04192, PRK04192, V-type ATP synthase subunit A; Provisional.
Length = 586
Score = 81.4 bits (202), Expect = 3e-16
Identities = 87/264 (32%), Positives = 118/264 (44%), Gaps = 65/264 (24%)
Query: 143 SEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKS----SIA----IDIIINQKNKNVTCI 194
EPL TG + ID+ P+ KG I G +GK+ +A DI+I
Sbjct: 208 VEPLITGQRVIDTFFPVAKGGTAAIPGPFGSGKTVTQHQLAKWADADIVI---------- 257
Query: 195 YVAIG----------QKISSIK--KTANLLEKYGAMPYTIIVAAT-----ASDSASMQFI 237
YV G ++ + KT L M T+++A T A+ AS+
Sbjct: 258 YVGCGERGNEMTEVLEEFPELIDPKTGRPL-----MERTVLIANTSNMPVAAREASI--- 309
Query: 238 SAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRL 297
Y+G TI EY+RD G D L++ D S+ A A R+IS L+ PG E YP YL SRL
Sbjct: 310 --YTGITIAEYYRDMGYDVLLMADSTSRWAEALREISGRLEEMPGEEGYPA---YLASRL 364
Query: 298 ---LERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIF 354
ER+ RV T G G+ GS+T I + GD S V N + I ++F
Sbjct: 365 AEFYERAGRV-------KTLG---GEEGSVTIIGAVSPPGGDFSEPVTQNTLRIV--KVF 412
Query: 355 --LDSSLFNSGIRPAINAGISVSR 376
LD+ L + PAIN S S
Sbjct: 413 WALDAELADRRHFPAINWLTSYSL 436
>gnl|CDD|179373 PRK02118, PRK02118, V-type ATP synthase subunit B; Provisional.
Length = 436
Score = 77.4 bits (191), Expect = 3e-15
Identities = 81/302 (26%), Positives = 129/302 (42%), Gaps = 22/302 (7%)
Query: 57 GNVFGLALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPID 116
G+ + L+ D + + G I+ GD V GR ++V L GR N G PID
Sbjct: 36 GSSLAQVIRLDGDKVTLQVFGGTRGISTGDEVVFLGRPMQVTYSESLLGRRFNGSGKPID 95
Query: 117 GKGPIKTKLTAPIEKVAPGV--ISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTG 174
G ++ + PIE P V + R E ++TGI ID + + Q+ I +G
Sbjct: 96 GGPELEGE---PIEIGGPSVNPVKRIVPREMIRTGIPMIDVFNTLVESQKIPIFSV--SG 150
Query: 175 KSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASM 234
+ A+ I + + I +G + E GA+ T++ TASD
Sbjct: 151 EPYNALLARIALQAEADIIILGGMGLTFDDYLFFKDTFENAGALDRTVMFIHTASDPPVE 210
Query: 235 QFISAYSGCTIGEYFR-DHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYL 293
+ + E F + K LV+ D++ A A ++IS+ + + P YPG L
Sbjct: 211 CLLVPDMALAVAEKFALEGKKKVLVLLTDMTNFADALKEISITMDQIPSNRGYPGS---L 267
Query: 294 HSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQI 353
+S L A K V+ + +G GS+T I + D++ VP N IT+GQ
Sbjct: 268 YSDL----ASRYEKAVD-FEDG------GSITIIAVTTMPGDDVTHPVPDNTGYITEGQF 316
Query: 354 FL 355
+L
Sbjct: 317 YL 318
>gnl|CDD|217261 pfam02874, ATP-synt_ab_N, ATP synthase alpha/beta family,
beta-barrel domain. This family includes the ATP
synthase alpha and beta subunits the ATP synthase
associated with flagella.
Length = 69
Score = 67.2 bits (165), Expect = 3e-14
Identities = 25/64 (39%), Positives = 39/64 (60%)
Query: 29 GKVISVFDGICQIYGLSNAMQGEMLEFPGNVFGLALNLERDSIGAVILGKYEHITEGDIV 88
G V+ V GI ++ GL NA++ E++EF + G LNL D + V++G + ++ GD V
Sbjct: 6 GPVVDVEFGIGRLPGLYNALEVELVEFGNGLLGEVLNLGGDKVRVVVMGGTDGLSRGDEV 65
Query: 89 KCTG 92
K TG
Sbjct: 66 KRTG 69
>gnl|CDD|184795 PRK14698, PRK14698, V-type ATP synthase subunit A; Provisional.
Length = 1017
Score = 73.1 bits (179), Expect = 1e-13
Identities = 53/155 (34%), Positives = 77/155 (49%), Gaps = 14/155 (9%)
Query: 218 MPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLL 277
M T+++A T++ + + S Y+G TI EYFRD G D ++ D S+ A A R+IS L
Sbjct: 717 MERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRL 776
Query: 278 KRPPGREAYPGDIFYLHSRL---LERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQA 334
+ PG E YP YL S+L ER+ RV + +Y + GS++ I +
Sbjct: 777 EEMPGEEGYPA---YLASKLAEFYERAGRV-VTLGSDY-------RVGSVSVIGAVSPPG 825
Query: 335 GDISAFVPTNVISITDGQIFLDSSLFNSGIRPAIN 369
GD S V N + + LD+ L PAIN
Sbjct: 826 GDFSEPVVQNTLRVVKVFWALDADLARRRHFPAIN 860
>gnl|CDD|233245 TIGR01042, V-ATPase_V1_A, V-type (H+)-ATPase V1, A subunit. This
models eukaryotic vacuolar (H+)-ATPase that is
responsible for acidifying cellular compartments. This
enzyme shares extensive sequence similarity with
archaeal ATP synthase [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 591
Score = 72.1 bits (177), Expect = 2e-13
Identities = 91/354 (25%), Positives = 148/354 (41%), Gaps = 75/354 (21%)
Query: 126 TAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIIN 185
T P+ P V + + PL TG + +D++ P +G I G GK+ +I+
Sbjct: 191 TWPVRSPRP-VTEKLPANTPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKT------VIS 243
Query: 186 Q-----KNKNVTCIYVAIGQKISSIKKTANLLEKYGA------------MPYTIIVAATA 228
Q N + +YV G++ + + A +L + M T +VA T+
Sbjct: 244 QSLSKYSNSDAI-VYVGCGERGNEM---AEVLMDFPELTMEVDGREESIMKRTTLVANTS 299
Query: 229 SDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPG 288
+ + + S Y+G T+ EYFRD G + ++ D S+ A A R+IS L P YP
Sbjct: 300 NMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA 359
Query: 289 DIFYLHSRL---LERSARVNIKYVENYTNGKVTG---KTGSLTAIPIIETQAGDISAFVP 342
YL +RL ER+ RV K G + GS++ + + GD S V
Sbjct: 360 ---YLGARLASFYERAGRV-----------KCLGSPEREGSVSIVGAVSPPGGDFSDPVT 405
Query: 343 TNVISITDGQIF--LDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKK-------LSSNI 393
+ + I Q+F LD L P++N IS S+ A + +F +K L +
Sbjct: 406 SATLGIV--QVFWGLDKKLAQRKHFPSVNWLISYSKYMRALE-EFYEKFYPEFVPLRTKA 462
Query: 394 RTDLAQYRELAAFSQFSSDLDLVTRKQLDRGARVT---------ELLKQKQYSP 438
+ L + +L Q LV + L ++T + L+Q Y+P
Sbjct: 463 KEILQEEEDLNEIVQ------LVGKDALAETDKITLEVAKLIKEDFLQQNGYTP 510
>gnl|CDD|214349 CHL00060, atpB, ATP synthase CF1 beta subunit.
Length = 494
Score = 68.5 bits (168), Expect = 3e-12
Identities = 85/320 (26%), Positives = 131/320 (40%), Gaps = 52/320 (16%)
Query: 73 AVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKV 132
AV + + + G V TG L VP+G GR+ N LG+P+D GP+ T+ T+PI +
Sbjct: 72 AVAMSATDGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDTRTTSPIHRS 131
Query: 133 APGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIIN-QKNKNV 191
AP I + +TGIK +D + P +G + + G GK+ + +++I N K
Sbjct: 132 APAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGG 191
Query: 192 TCIYVAIGQ------------KISSIKKTANLLEK-----YGAMPYT----IIVAATASD 230
++ +G+ K S + N+ E YG M + V TA
Sbjct: 192 VSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGLTAL- 250
Query: 231 SASMQFISAYSGCTIGEYFRDHGK-DALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGD 289
T+ EYFRD K D L+ D++ + A ++S LL R P Y
Sbjct: 251 -------------TMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPT 297
Query: 290 IFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISIT 349
+ L ER K GS+T+I + A D++ P +
Sbjct: 298 LSTEMGSLQERITST---------------KEGSITSIQAVYVPADDLTDPAPATTFAHL 342
Query: 350 DGQIFLDSSLFNSGIRPAIN 369
D L L GI PA++
Sbjct: 343 DATTVLSRGLAAKGIYPAVD 362
>gnl|CDD|223543 COG0467, RAD55, RecA-superfamily ATPases implicated in signal
transduction [Signal transduction mechanisms].
Length = 260
Score = 38.2 bits (89), Expect = 0.007
Identities = 37/155 (23%), Positives = 58/155 (37%), Gaps = 21/155 (13%)
Query: 144 EPLQTGIKAIDSIVPIG--KGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQK 201
E + TGI +D I+ G +G LI G TGK+ A+ + + +YV+ +
Sbjct: 3 ERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEES 62
Query: 202 ISSIKKTANL----LEKYGAMPYTIIVAATASDSASMQFISAYSGCT-------IGEYFR 250
+ + A LE Y I+ A + I I E
Sbjct: 63 PEELLENARSFGWDLEVYIEKGKLAILDA-FLSEKGLVSIVVGDPLDLEELLDRIREIVE 121
Query: 251 DHGKDALVVYDDLSK------QAVAYRQISLLLKR 279
G D +V+ D +++ R+I LLLKR
Sbjct: 122 KEGADRVVI-DSITELTLYLNDPALVRRILLLLKR 155
>gnl|CDD|217171 pfam02663, FmdE, FmdE, Molybdenum formylmethanofuran dehydrogenase
operon. This entry represents the FmdE protein that is
encode by the molybdenum formylmethanofuran
dehydrogenase operon. FmdE does not co-purify with the
molybdenum isozyme that is formed by FmdC and FmdB. The
domain is typically found as a single copy, but is
repeated in some sequence two to three times. It is also
common place to find this domain co-occurs with a
zinc-beta ribbon domain, suggesting that is may bind
nucleic acid and be involved in transcription
regulation.
Length = 126
Score = 36.2 bits (84), Expect = 0.008
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 15/83 (18%)
Query: 193 CIYVAIGQKISSIKKTANLLEKYGAMP----YTIIVAATASDSASMQFISAYSGCTIGE- 247
C +A+G +++ LE+ G +IV + + ++Q ++ GCT+G+
Sbjct: 7 CPGLALGYRMAEY-----ALEELGLDKDDEELVVIVETDSCLADAVQVLT---GCTLGKG 58
Query: 248 --YFRDHGKDALVVYDDLSKQAV 268
+D+GK A YD + + V
Sbjct: 59 NLIVKDYGKMAATFYDRGTGEGV 81
>gnl|CDD|236490 PRK09376, rho, transcription termination factor Rho; Provisional.
Length = 416
Score = 37.8 bits (89), Expect = 0.010
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 153 IDSIVPIGKGQRELIIGDRQTGK----SSIAIDIIINQK 187
ID I PIGKGQR LI+ + GK +IA I N
Sbjct: 160 IDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTNHP 198
>gnl|CDD|224080 COG1158, Rho, Transcription termination factor [Transcription].
Length = 422
Score = 38.0 bits (89), Expect = 0.011
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 153 IDSIVPIGKGQRELIIGDRQTGK----SSIAIDIIINQK 187
ID I PIGKGQR LI+ + GK +IA I N
Sbjct: 164 IDLISPIGKGQRGLIVAPPKAGKTTLLQNIANAITTNHP 202
>gnl|CDD|225102 COG2191, COG2191, Formylmethanofuran dehydrogenase subunit E
[Energy production and conversion].
Length = 206
Score = 36.6 bits (85), Expect = 0.017
Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 12/115 (10%)
Query: 193 CIYVAIGQKISSI-KKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGE---Y 248
C +A+G +++ I + + I+A ++S + +GCTIG
Sbjct: 26 CPGLALGYRMALIAMEELGVRSVDEE-----ILAIVETNSCFPDGVQVATGCTIGNGNLI 80
Query: 249 FRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSAR 303
D+GK AL + S +AV +L P + + + L S
Sbjct: 81 LLDYGKLALTLVKRGSGKAVRVYVKREILDEDPEKTE---LFPKVRAGYLGPSEI 132
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho;
Provisional.
Length = 672
Score = 37.6 bits (88), Expect = 0.018
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 153 IDSIVPIGKGQRELIIGDRQTGKSSIAIDI 182
ID I+PIGKGQR LI+ + GK++I +I
Sbjct: 407 IDLIMPIGKGQRGLIVSPPKAGKTTILQNI 436
>gnl|CDD|238548 cd01128, rho_factor, Transcription termination factor rho is a
bacterial ATP-dependent RNA/DNA helicase. It is a
homohexamer. Each monomer consists of an N-terminal
domain of the OB fold, which is responsible for binding
to cysteine rich nucleotides. This alignment is of the
C-terminal ATP binding domain.
Length = 249
Score = 36.5 bits (85), Expect = 0.019
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 151 KAIDSIVPIGKGQRELIIGDRQTGKS----SIAIDIIINQ 186
+ +D PIGKGQR LI+ + GK+ SIA I N
Sbjct: 5 RVVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNH 44
>gnl|CDD|162030 TIGR00767, rho, transcription termination factor Rho. This RNA
helicase, the transcription termination factor Rho,
occurs in nearly all bacteria but is missing from the
Cyanobacteria, the Mollicutes (Mycoplasmas), and various
Lactobacillales including Streptococcus. It is also
missing, of course, from the Archaea, which also lack
Nus factors. Members of this family from Micrococcus
luteus, Mycobacterium tuberculosis, and related species
have a related but highly variable long, highly charged
insert near the amino end. Members of this family differ
in the specificity of RNA binding [Transcription,
Transcription factors].
Length = 415
Score = 36.2 bits (84), Expect = 0.041
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 113 DPIDGKGPIKTKLTAPIEKVAPGVISRQSVSE--PLQTGIKAIDSIVPIGKGQRELIIGD 170
+ ++G P K K E + P + + E + +D PIGKGQR LI+
Sbjct: 117 ESVNGDDPEKAKNRVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAP 176
Query: 171 RQTGKS----SIAIDIIINQ 186
+ GK+ IA I N
Sbjct: 177 PKAGKTVLLQKIAQAITRNH 196
>gnl|CDD|237150 PRK12608, PRK12608, transcription termination factor Rho;
Provisional.
Length = 380
Score = 35.4 bits (82), Expect = 0.067
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 151 KAIDSIVPIGKGQRELIIGDRQTGKSSI 178
+ +D + PIGKGQR LI+ + GK+ +
Sbjct: 122 RVVDLVAPIGKGQRGLIVAPPRAGKTVL 149
>gnl|CDD|220214 pfam09378, HAS-barrel, HAS barrel domain. The HAS barrel is named
after HerA-ATP Synthase. In ATP synthases, this domain
is implicated in the assembly of the catalytic toroid
and docking of accessory subunits, such as the subunit
of the ATP synthase complex. Similar roles in docking of
the functional partner, the NurA nuclease, and assembly
of the HerA toroid complex appear likely for the
HAS-barrel of the HerA family.
Length = 88
Score = 29.1 bits (65), Expect = 1.2
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 28 QGKVI---SVFDGICQIYGLSNAMQGEMLEFPGN---VFGLALNLERDSIGAVILGKYEH 81
G VI S DGI ++ GL + GE +E + V G+ LN+ER + L
Sbjct: 1 IGIVIGTVSSNDGIFRVEGLKDVRVGEYVEIELDGSKVLGMVLNIERGLSNDLNLVLSLK 60
Query: 82 ITEGDIVKCTGRILEVPIGPELCGRVIN 109
+ G + P G ++ G+V
Sbjct: 61 ELDESNGDIVGVVAFEPTGAKVLGKVKR 88
>gnl|CDD|222122 pfam13429, TPR_15, Tetratricopeptide repeat.
Length = 279
Score = 30.7 bits (70), Expect = 1.6
Identities = 13/49 (26%), Positives = 19/49 (38%)
Query: 248 YFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSR 296
+ R H L L +A Y++I LL EA +L +R
Sbjct: 103 WRRYHSPRHLQSALYLYTRAGDYKRIVDLLASLTPEEAAEQSAGFLSAR 151
>gnl|CDD|176680 cd07257, THT_oxygenase_C, The C-terminal domain of
2,4,5-Trihydroxytoluene (THT) oxygenase, which is an
extradiol dioxygenease in the 2,4-dinitrotoluene (DNT)
degradation pathway. This subfamily contains the
C-terminal, catalytic, domain of THT oxygenase. THT
oxygenase is an extradiol dioxygenase in the
2,4-dinitrotoluene (DNT) degradation pathway. It
catalyzes the conversion of 2,4,5-trihydroxytoluene to
an unstable ring fission product,
2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The
native protein was determined to be a dimer by gel
filtration. The enzyme belongs to the type I family of
extradiol dioxygenases which contains two structurally
homologous barrel-shaped domains at the N- and
C-terminus of each monomer. The active-site metal is
located in the C-terminal barrel. Fe(II) is required for
its catalytic activity.
Length = 153
Score = 29.6 bits (67), Expect = 2.1
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 68 RDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPE 102
D G ++ EH T+GD+V P GPE
Sbjct: 113 FDPWGFIV----EHYTDGDLVNADTPPGVHPAGPE 143
>gnl|CDD|221955 pfam13173, AAA_14, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily.
Length = 127
Score = 28.7 bits (65), Expect = 3.0
Identities = 8/31 (25%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 166 LIIGDRQTGKSSIAIDIIINQKNKNVTCIYV 196
+I G RQ GK+++ + + ++N+ +Y+
Sbjct: 6 VITGPRQVGKTTLLLQFLKELLSENI--LYI 34
>gnl|CDD|200042 TIGR00666, PBP4, D-alanyl-D-alanine carboxypeptidase, serine-type,
PBP4 family. In E. coli, this protein is known as
penicillin binding protein 4 (dacB). A signal sequence
is cleaved from a precursor form. The protein is
described as periplasmic in E. coli (Gram-negative) and
extracellular in Actinomadura R39 (Gram-positive).
Unlike some other proteins with similar activity, it
does not form transpeptidation. It is not essential for
viability. This family is related to class A
beta-lactamases [Cell envelope, Biosynthesis and
degradation of murein sacculus and peptidoglycan].
Length = 333
Score = 29.8 bits (67), Expect = 3.1
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 315 GKVTGKTGSLTAIP----IIETQAGDISAFV 341
GKV KTGSLT + I T +G AFV
Sbjct: 298 GKVRAKTGSLTGVYSLAGFITTASGQKLAFV 328
>gnl|CDD|237919 PRK15193, PRK15193, outer membrane usher protein; Provisional.
Length = 876
Score = 29.9 bits (67), Expect = 3.7
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 226 ATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPG 282
AS SAS+ + A+ +G + D+G + Y LS VA+ Q + L +P G
Sbjct: 659 KGASGSASLDYKGAFGDANVGYNYSDNGSQQQLNY-GLSGGLVAHSQ-GITLSQPLG 713
>gnl|CDD|239434 cd03318, MLE, Muconate Lactonizing Enzyme (MLE), an homooctameric
enzyme, catalyses the conversion of cis,cis-muconate
(CCM) to muconolactone (ML) in the catechol branch of
the beta-ketoadipate pathway. This pathway is used in
soil microbes to breakdown lignin-derived aromatics,
catechol and protocatechuate, to citric acid cycle
intermediates. Some bacterial species are also capable
of dehalogenating chloroaromatic compounds by the action
of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs
are members of the enolase superfamily characterized by
the presence of an enolate anion intermediate which is
generated by abstraction of the alpha-proton of the
carboxylate substrate by an active site residue and that
is stabilized by coordination to the essential Mg2+ ion.
Length = 365
Score = 29.2 bits (66), Expect = 5.1
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
Query: 200 QKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIG-EYFRDHGKDALV 258
QK+++I + A + G M + I TA AS + G E F L+
Sbjct: 280 QKVAAIAEAAGIALYGGTMLESSI--GTA---ASAHLFATLPSLPFGCELF-----GPLL 329
Query: 259 VYDDLSKQAVAYRQISLLLKRPPG 282
+ +DL ++ +AYR L + PG
Sbjct: 330 LAEDLLEEPLAYRDGELHVPTGPG 353
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 28.7 bits (65), Expect = 5.3
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 159 IGKGQRELIIGDRQTGKSSI 178
I G R LI G TGKSS+
Sbjct: 24 IKPGDRLLITGPSGTGKSSL 43
>gnl|CDD|216880 pfam02113, Peptidase_S13, D-Ala-D-Ala carboxypeptidase 3 (S13)
family.
Length = 444
Score = 29.0 bits (65), Expect = 7.2
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 315 GKVTGKTGSLTAIP----IIETQAGDISAFV 341
GKV KTGSLT + + T +G AF
Sbjct: 389 GKVRAKTGSLTGVYSLAGYVTTASGRKLAFS 419
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.377
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,132,011
Number of extensions: 2633943
Number of successful extensions: 2806
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2690
Number of HSP's successfully gapped: 106
Length of query: 515
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 414
Effective length of database: 6,457,848
Effective search space: 2673549072
Effective search space used: 2673549072
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.3 bits)