RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2894
(515 letters)
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase,
hydrolase-transport PROT complex; HET: ANP ADP; 3.26A
{Escherichia coli DH1} PDB: 2a7u_A
Length = 513
Score = 900 bits (2327), Expect = 0.0
Identities = 317/511 (62%), Positives = 416/511 (81%)
Query: 1 MKINASEISTIIQEQIKNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPGNVF 60
M++N++EIS +I+++I FN +E +N+G ++SV DG+ +I+GL++ MQGEM+ PGN +
Sbjct: 1 MQLNSTEISELIKQRIAQFNVVSEAHNEGTIVSVSDGVIRIHGLADCMQGEMISLPGNRY 60
Query: 61 GLALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGP 120
+ALNLERDS+GAV++G Y + EG VKCTGRILEVP+G L GRV+N LG PIDGKGP
Sbjct: 61 AIALNLERDSVGAVVMGPYADLAEGMKVKCTGRILEVPVGRGLLGRVVNTLGAPIDGKGP 120
Query: 121 IKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAI 180
+ + +E +APGVI RQSV +P+QTG KA+DS++PIG+GQRELIIGDRQTGK+++AI
Sbjct: 121 LDHDGFSAVEAIAPGVIERQSVDQPVQTGYKAVDSMIPIGRGQRELIIGDRQTGKTALAI 180
Query: 181 DIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAY 240
D IINQ++ + CIYVAIGQK S+I LE++GA+ TI+V ATAS+SA++Q+++ Y
Sbjct: 181 DAIINQRDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAPY 240
Query: 241 SGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLER 300
+GC +GEYFRD G+DAL++YDDLSKQAVAYRQISLLL+RPPGREA+PGD+FYLHSRLLER
Sbjct: 241 AGCAMGEYFRDRGEDALIIYDDLSKQAVAYRQISLLLRRPPGREAFPGDVFYLHSRLLER 300
Query: 301 SARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLF 360
+ARVN +YVE +T G+V GKTGSLTA+PIIETQAGD+SAFVPTNVISITDGQIFL+++LF
Sbjct: 301 AARVNAEYVEAFTKGEVKGKTGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLETNLF 360
Query: 361 NSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFSSDLDLVTRKQ 420
N+GIRPA+N GISVSRVGGAAQ K +KKLS IRT LAQYRELAAFSQF+SDLD TRKQ
Sbjct: 361 NAGIRPAVNPGISVSRVGGAAQTKIMKKLSGGIRTALAQYRELAAFSQFASDLDDATRKQ 420
Query: 421 LDRGARVTELLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYKFMKTCQN 480
LD G +VTELLKQKQY+P+ V+ +++LFA +G+L D+E+ KI +FE++L ++
Sbjct: 421 LDHGQKVTELLKQKQYAPMSVAQQSLVLFAAERGYLADVELSKIGSFEAALLAYVDRDHA 480
Query: 481 SILEKIKNVNEFNADIEDSLTTILINFKKSY 511
++++I +N +IE L IL +FK +
Sbjct: 481 PLMQEINQTGGYNDEIEGKLKGILDSFKATQ 511
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability,
potential tentoxin binding hydrolase; 3.20A {Spinacia
oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Length = 507
Score = 865 bits (2238), Expect = 0.0
Identities = 258/514 (50%), Positives = 356/514 (69%), Gaps = 11/514 (2%)
Query: 1 MKINASEISTIIQEQIKNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPGNVF 60
I A EIS II+E+I+ +N ++ N G V+ V DGI +I+GL M GE++EF
Sbjct: 2 ATIRADEISKIIRERIEGYNREVKVVNTGTVLQVGDGIARIHGLDEVMAGELVEFEEGTI 61
Query: 61 GLALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGP 120
G+ALNLE +++G V++G I EG VK TGRI ++P+ GRVINAL PIDG+G
Sbjct: 62 GIALNLESNNVGVVLMGDGLMIQEGSSVKATGRIAQIPVSEAYLGRVINALAKPIDGRGE 121
Query: 121 IKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAI 180
I + IE APG++SR+SV EPLQTG+ AID+++P+G+GQRELIIGDRQTGK+++A
Sbjct: 122 ITASESRLIESPAPGIMSRRSVYEPLQTGLIAIDAMIPVGRGQRELIIGDRQTGKTAVAT 181
Query: 181 DIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAY 240
D I+NQ+ +NV C+YVAIGQK SS+ + ++ GAM YTI+VA TA A++Q+++ Y
Sbjct: 182 DTILNQQGQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPY 241
Query: 241 SGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLER 300
+G + EYF + L++YDDLSKQA AYRQ+SLLL+RPPGREAYPGD+FYLHSRLLER
Sbjct: 242 TGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLER 301
Query: 301 SARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLF 360
+A+++ E GS+TA+PI+ETQAGD+SA++PTNVISITDGQIFL + LF
Sbjct: 302 AAKLSSLLGE-----------GSMTALPIVETQAGDVSAYIPTNVISITDGQIFLSADLF 350
Query: 361 NSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFSSDLDLVTRKQ 420
N+GIRPAIN GISVSRVG AAQIK +KK++ ++ +LAQ+ EL AF+QF+SDLD T+ Q
Sbjct: 351 NAGIRPAINVGISVSRVGSAAQIKAMKKVAGKLKLELAQFAELEAFAQFASDLDKATQNQ 410
Query: 421 LDRGARVTELLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYKFMKTCQN 480
L RG R+ ELLKQ Q +PL V + ++ G+LD +E+ ++ + L ++KT +
Sbjct: 411 LARGQRLRELLKQPQSAPLTVEEQVMTIYTGTNGYLDSLELDQVRKYLVELRTYVKTNKP 470
Query: 481 SILEKIKNVNEFNADIEDSLTTILINFKKSYDAK 514
E I + F + E L + + + +
Sbjct: 471 EFQEIISSTKTFTEEAEALLKEAIQEQMERFLLQ 504
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for
structural genomics, JCSG, protein structure initiative
ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima
MSB8}
Length = 515
Score = 863 bits (2232), Expect = 0.0
Identities = 290/512 (56%), Positives = 379/512 (74%), Gaps = 12/512 (2%)
Query: 1 MKINASEISTIIQEQIKNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEF-PGNV 59
++IN EI+ +++E+IK+F ++ + GKVI V DGI + YGL+ M E++EF V
Sbjct: 13 LRINPGEITKVLEEKIKSFEEKIDLEDTGKVIQVGDGIARAYGLNKVMVSELVEFVETGV 72
Query: 60 FGLALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKG 119
G+A NLE D++G +ILG+Y+ I EG V+ RI+EVP+G EL GRV+N LG+P+DGKG
Sbjct: 73 KGVAFNLEEDNVGIIILGEYKDIKEGHTVRRLKRIIEVPVGEELLGRVVNPLGEPLDGKG 132
Query: 120 PIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIA 179
PI K PIE APGVI R+ V PLQTGIKAIDS++PIG+GQRELIIGDRQTGK++IA
Sbjct: 133 PINAKNFRPIEIKAPGVIYRKPVDTPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTAIA 192
Query: 180 IDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISA 239
ID IINQK + V CIYVAIGQK S+I + + L +YGAM YT +V A+ASD AS+Q+I+
Sbjct: 193 IDTIINQKGQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIAP 252
Query: 240 YSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLE 299
Y+GC +GEYF G+DALVVYDDLSK AVAYRQ+SLL++RPPGREAYPGDIFYLHSRLLE
Sbjct: 253 YAGCAMGEYFAYSGRDALVVYDDLSKHAVAYRQLSLLMRRPPGREAYPGDIFYLHSRLLE 312
Query: 300 RSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSL 359
R+ R+N K GSLTA+PI+ETQA DISA++PTNVISITDGQI+L+ L
Sbjct: 313 RAVRLNDKL-----------GGGSLTALPIVETQANDISAYIPTNVISITDGQIYLEPGL 361
Query: 360 FNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFSSDLDLVTRK 419
F +G RPAIN G+SVSRVGG+AQIK +K+++ +R DLAQYREL F+QF+++LD TR
Sbjct: 362 FYAGQRPAINVGLSVSRVGGSAQIKAMKQVAGMLRIDLAQYRELETFAQFATELDPATRA 421
Query: 420 QLDRGARVTELLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYKFMKTCQ 479
Q+ RG R+ ELLKQ+QYSP+PV V+LFA +G+LDD+ ++++ FE +FM
Sbjct: 422 QIIRGQRLMELLKQEQYSPMPVEEQVVVLFAGVRGYLDDLPVEEVRRFEKEFLRFMHEKH 481
Query: 480 NSILEKIKNVNEFNADIEDSLTTILINFKKSY 511
IL+ IK E ++ E+ L + FK ++
Sbjct: 482 QDILDDIKTKKELTSETEEKLKKAIEEFKTTF 513
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP
ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A*
1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A*
2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Length = 510
Score = 862 bits (2230), Expect = 0.0
Identities = 277/520 (53%), Positives = 381/520 (73%), Gaps = 19/520 (3%)
Query: 2 KINASEISTIIQEQIKNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPGNVFG 61
K +E+S+I++E+I + + ++ G+V+S+ DGI +++GL N EM+EF + G
Sbjct: 2 KTGTAEVSSILEERILGADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKG 61
Query: 62 LALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPI 121
++LNLE D++G V+ G + I EGDIVK TG I++VP+G EL GRV++ALG+ IDGKGPI
Sbjct: 62 MSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPI 121
Query: 122 KTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAID 181
+K + APG+I R SV EP+QTGIKA+DS+VPIG+GQRELIIGDRQTGK+SIAID
Sbjct: 122 GSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAID 181
Query: 182 IIINQK--------NKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSAS 233
IINQK K + CIYVAIGQK S++ + L AM YTI+V+ATASD+A
Sbjct: 182 TIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAP 241
Query: 234 MQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYL 293
+Q+++ YSGC++GEYFRD+GK AL++YDDLSKQAVAYRQ+SLLL+RPPGREAYPGD+FYL
Sbjct: 242 LQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYL 301
Query: 294 HSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQI 353
HSRLLER+A++N + GSLTA+P+IETQAGD+SA++PTNVISITDGQI
Sbjct: 302 HSRLLERAAKMNDAF-----------GGGSLTALPVIETQAGDVSAYIPTNVISITDGQI 350
Query: 354 FLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFSSDL 413
FL++ LF GIRPAIN G+SVSRVG AAQ + +K+++ ++ +LAQYRE+AAF+QF SDL
Sbjct: 351 FLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDL 410
Query: 414 DLVTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYK 473
D T++ L RG R+TELLKQ QYSP+ + +++A +G+LD +E KI FE++
Sbjct: 411 DAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLS 470
Query: 474 FMKTCQNSILEKIKNVNEFNADIEDSLTTILINFKKSYDA 513
+ + ++L KI+ + + + + L I+ NF ++A
Sbjct: 471 HVISQHQALLGKIRTDGKISEESDAKLKEIVTNFLAGFEA 510
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase,
single analysis, thermoalkaliphilic, hydrolase; 3.06A
{Bacillus SP} PDB: 1sky_B
Length = 502
Score = 859 bits (2221), Expect = 0.0
Identities = 288/513 (56%), Positives = 374/513 (72%), Gaps = 13/513 (2%)
Query: 1 MKINASEISTIIQEQIKNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPGNVF 60
M I EIS +I++QI+N+ E+ G VI V DGI +++GL M GE+LEF V
Sbjct: 1 MSIRPEEISALIKKQIENYEADLEVVEVGTVIQVGDGIARVHGLEKVMAGELLEFENGVM 60
Query: 61 GLALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGP 120
G+A NLE D++G VILG Y I EG VK TGRI+EVP+G L GRV+N LG P+DG+GP
Sbjct: 61 GMAQNLEEDNVGVVILGPYTEIREGTQVKRTGRIMEVPVGEALLGRVVNPLGQPLDGRGP 120
Query: 121 IKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAI 180
I+T PIE APGV+ R+SV EPLQTGIKAIDS++PIG+GQRELIIGDRQTGK++IAI
Sbjct: 121 IETAEYRPIESPAPGVMDRKSVHEPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTTIAI 180
Query: 181 DIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAY 240
D IINQK ++V CIYVAIGQK S++ L ++ A+ YTI+V A+AS+ A + +++ Y
Sbjct: 181 DTIINQKGQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAPY 240
Query: 241 SGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLER 300
+GC +GEYF GK ALVVYDDLSKQA AYR++SLLL+RPPGREAYPGD+FYLHSRLLER
Sbjct: 241 AGCAMGEYFMYKGKHALVVYDDLSKQAAAYRELSLLLRRPPGREAYPGDVFYLHSRLLER 300
Query: 301 SARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLF 360
+A+++ + G GSLTA+P IETQAGD+SA++PTNVISITDGQIFL+S LF
Sbjct: 301 AAKLSDEK------GG-----GSLTALPFIETQAGDVSAYIPTNVISITDGQIFLESDLF 349
Query: 361 NSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFSSDLDLVTRKQ 420
SG+RPA+N GISVSRVGGAAQIK +KK++ +R DLAQYREL AF+QF SDLD T+ +
Sbjct: 350 YSGVRPAVNVGISVSRVGGAAQIKAMKKVAGTLRLDLAQYRELQAFAQFGSDLDKATQAK 409
Query: 421 LDRGARVTELLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYKFMKTCQN 480
L+RG R E+LKQ ++ P+PV + ++A+ GF+DDI ++ + FE L FM+ ++
Sbjct: 410 LNRGERTVEILKQDEHKPMPVEEQVISIYAVTNGFMDDIPVEDVRRFEEELLSFMRANKD 469
Query: 481 SILEKIKNVNEFNADIEDSLTTILINFKKSYDA 513
S+L+ I+ E E L + FKK +
Sbjct: 470 SLLDHIRQTGELPDTKE--LDAAIEEFKKGFTP 500
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase,
A1AO, ATP synthesis, hydrogen ION transport, ION
transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A*
3b2q_A* 2rkw_A* 3eiu_A*
Length = 469
Score = 230 bits (588), Expect = 6e-70
Identities = 98/423 (23%), Positives = 166/423 (39%), Gaps = 42/423 (9%)
Query: 35 FDGICQIYGLSN-AMQGEMLEFPGNVFGLALNLERDSIGAVILGKYEHITEGDIVKCTGR 93
++ I I +G++L+ ++ + + + + V TG
Sbjct: 35 YNEIVNIKMGDGTVRRGQVLDSSADIVVV-----------QVFEGTGGLDKDCGVIFTGE 83
Query: 94 ILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAI 153
L++P +L GR+++ G+P DG I I A +R + +QTGI I
Sbjct: 84 TLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTGISTI 143
Query: 154 DSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVT----CIYVAIGQKISSIKKTA 209
D + +GQ+ I + IA+ I ++ A+G +
Sbjct: 144 DGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFM 203
Query: 210 NLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFR-DHGKDALVVYDDLSKQAV 268
+ EK GA+ ++ A D A + ++ T EY +HG LV+ D++ A
Sbjct: 204 SDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITNYAE 263
Query: 269 AYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIP 328
A RQ+ PGR YPG ++ + L ER+ G V G GS+T IP
Sbjct: 264 ALRQMGAARNEVPGRRGYPGYMYTDLATLYERA-------------GIVKGAKGSVTQIP 310
Query: 329 IIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSR-----VGGAAQI 383
I+ DI+ +P IT+GQI + L GI P IN S+SR +G
Sbjct: 311 ILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSGIGAGKTR 370
Query: 384 KFIKKLSSNIRTDLAQYRELAA-----FSQFSSDLDLVTRKQLDRGARVTELLKQKQYSP 438
+ K +S + A+ R+L + S+ D + D + ++Q +
Sbjct: 371 EDHKAVSDQMYAGYAEGRDLRGLVAIVGKEALSERDTKFLEFAD--LFEDKFVRQGRNEN 428
Query: 439 LPV 441
+
Sbjct: 429 RTI 431
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis,
ATP-binding, hydrogen ION TRA hydrolase, ION transport;
2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D
3j0j_D*
Length = 464
Score = 227 bits (580), Expect = 8e-69
Identities = 91/426 (21%), Positives = 162/426 (38%), Gaps = 51/426 (11%)
Query: 35 FDGICQIYGLSN-AMQGEMLEFPGNVFGLALNLERDSIGAVILGKYEHITEGD-IVKCTG 92
+ I I + G+++E + + + + V
Sbjct: 29 YGAIVDIKDGTGRVRGGQVIEVSEEYAVI-----------QVFEETTGLDLATTSVSLVE 77
Query: 93 RILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKA 152
+ + + E+ GR N +G PIDG PI + PI + ++R+ + +QTGI
Sbjct: 78 DVARLGVSKEMLGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVARRKPEQFIQTGIST 137
Query: 153 IDSIVPIGKGQRELIIGDRQTGKSSIAIDIIIN-----------QKNKNVTCIYVAIGQK 201
ID + + +GQ+ I + IA I +K + ++ A+G
Sbjct: 138 IDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGIT 197
Query: 202 ISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFR-DHGKDALVVY 260
+ E+ GA+ +++ A D + ++ T+ EY +H LV+
Sbjct: 198 QRELSYFIQEFERTGALSRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVIL 257
Query: 261 DDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGK 320
D++ + A R+I + PGR YPG ++ + + ER+ G V GK
Sbjct: 258 TDMTNYSEALREIGAAREEIPGRRGYPGYMYTDLATIYERA-------------GVVEGK 304
Query: 321 TGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSR---- 376
GS+T IPI+ D + +P IT+GQI L L GI P I+ S+SR
Sbjct: 305 KGSVTQIPILSMPDDDRTHPIPDLTGYITEGQIQLSRELHRKGIYPPIDPLPSLSRLMNN 364
Query: 377 -VGGAAQIKFIKKLSSNIRTDLAQYRELA-----AFSQFSSDLDLVTRKQLDRGARVTEL 430
VG + K++S + + A ++ ++ D R+ L
Sbjct: 365 GVGKGKTREDHKQVSDQLYSAYANGVDIRKLVAIIGEDALTEND---RRYLQFADAFERF 421
Query: 431 LKQKQY 436
+
Sbjct: 422 FINQGQ 427
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta
structure, hydrolase; HET: ADP; 2.40A {Salmonella
typhimurium}
Length = 438
Score = 195 bits (497), Expect = 5e-57
Identities = 92/373 (24%), Positives = 157/373 (42%), Gaps = 31/373 (8%)
Query: 38 ICQIY----GLSNAMQGEMLEFPGNVFGLAL--NLERDSIGAVILGKYEHITEGDIVKCT 91
C I + ++ E++ F G L +E GA +
Sbjct: 33 TCIIERQDGPETKEVESEVVGFNGQRLFLMPLEEVEGILPGARV------YARNGHGDGL 86
Query: 92 GRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIK 151
++P+GP L GRV++ G P+DG T T + + R + L TG++
Sbjct: 87 QSGKQLPLGPALLGRVLDGGGKPLDGLPAPDTLETGALITPPFNPLQRTPIEHVLDTGVR 146
Query: 152 AIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVA-IGQKISSIKK-TA 209
AI++++ +G+GQR + GKS + + + I V IG++ +K
Sbjct: 147 AINALLTVGRGQRMGLFAGSGVGKSVLLGMMA---RYTRADVIVVGLIGERGREVKDFIE 203
Query: 210 NLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVA 269
N+L G ++++AA A S ++ A I E FRD G+ L++ D L++ A+A
Sbjct: 204 NILGPDG-RARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMA 262
Query: 270 YRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPI 329
R+I+L + PP + YP +F L+ER+ G GS+TA
Sbjct: 263 QREIALAIGEPPATKGYPPSVFAKLPALVERA-------------GNGIHGGGSITAFYT 309
Query: 330 IETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKL 389
+ T+ D + + +I DG I L L +G PAI+ S+SR A +
Sbjct: 310 VLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALITEQHYAR 369
Query: 390 SSNIRTDLAQYRE 402
+ L+ ++
Sbjct: 370 VRLFKQLLSSFQR 382
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Length = 347
Score = 189 bits (483), Expect = 6e-56
Identities = 79/312 (25%), Positives = 137/312 (43%), Gaps = 25/312 (8%)
Query: 95 LEVPIGPELCGRVINALGDPIDGKGPI-KTKLTAPIEKVAPGVISRQSVSEPLQTGIKAI 153
++ +G L GR+I+ +G P++ + P + RQ + +P G++AI
Sbjct: 3 HKIRVGDALLGRLIDGIGRPMESNIVAPYLPFERSLYAEPPDPLLRQVIDQPFILGVRAI 62
Query: 154 DSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVA-IGQKISSIKKTANLL 212
D ++ G GQR I GKS++ I + I +A IG++ + L
Sbjct: 63 DGLLTCGIGQRIGIFAGSGVGKSTLLGMIC---NGASADIIVLALIGERGREVN---EFL 116
Query: 213 EKYG--AMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAY 270
+ ++V T+ A + +A++ TI EYFRD GK+ L++ D +++ A A
Sbjct: 117 ALLPQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA 176
Query: 271 RQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPII 330
R + L P R +P +F +LLER+ GS+TAI +
Sbjct: 177 RDVGLASGEPDVRGGFPPSVFSSLPKLLERAG---------------PAPKGSITAIYTV 221
Query: 331 ETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLS 390
++ +++ + V SI DG I L L PAI+ G+S SRV + +
Sbjct: 222 LLESDNVNDPIGDEVRSILDGHIVLTRELAEENHFPAIDIGLSASRVMHNVVTSEHLRAA 281
Query: 391 SNIRTDLAQYRE 402
+ + +A Y+
Sbjct: 282 AECKKLIATYKN 293
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis,
ATP-binding, hydrogen ION TRA hydrolase, ION transport;
2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A
3j0j_A* 1um2_C
Length = 578
Score = 148 bits (376), Expect = 5e-39
Identities = 91/416 (21%), Positives = 164/416 (39%), Gaps = 52/416 (12%)
Query: 25 IYNQGKVISV----------FDGICQIYGLSNAMQGEMLEFPGNVFGLALNLERDSIGAV 74
+ + G ++V +DGI + G + V AL+ E+
Sbjct: 64 VVSTGLPLAVELGPGMLNGIYDGIQRPLERIREKTGIYI--TRGVVVHALDREKKWAWTP 121
Query: 75 ILGKYEHITEGDI---VKCTGRILEVPIGPELCGRVIN--ALGDP--------IDGKGPI 121
++ + + G + V G ++ + P++ GRV G+ ++ +
Sbjct: 122 MVKPGDEVRGGMVLGTVPEFGFTHKILVPPDVRGRVKEVKPAGEYTVEEPVVVLEDGTEL 181
Query: 122 KTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAID 181
K T P+ + P V + + P TG++ +D + P+ G I G +GKS
Sbjct: 182 KMYHTWPVRRARP-VQRKLDPNTPFLTGMRILDVLFPVAMGGTAAIPGPFGSGKSVT-QQ 239
Query: 182 IIINQKNKNVTCIYVAIGQK-------ISSIKKTANLLEKYGAMPYTIIVAATASDSASM 234
+ N +V +YV G++ + + + M T+++A T++ +
Sbjct: 240 SLAKWSNADVV-VYVGSGERGNEMTDVLVEFPELTDPKTGGPLMHRTVLIANTSNMPVAA 298
Query: 235 QFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLH 294
+ S Y G TI EYFRD G ++ D S+ A A R+IS L+ P E YP +
Sbjct: 299 REASIYVGVTIAEYFRDQGFSVALMADSTSRWAEALREISSRLEEMPAEEGYPPYLAARL 358
Query: 295 SRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIF 354
+ ER+ +V + G+ G++T + + GD+S V + + I
Sbjct: 359 AAFYERAGKVIT----------LGGEEGAVTIVGAVSPPGGDMSEPVTQSTLRIVGAFWR 408
Query: 355 LDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSN-------IRTDLAQYREL 403
LD+SL PAIN S S A + + ++ + I L + L
Sbjct: 409 LDASLAFRRHFPAINWNGSYSLFTSALDPWYRENVAEDYPELRDAISELLQREAGL 464
Score = 29.3 bits (66), Expect = 3.3
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 82 ITEGDIVKCTGRILEVPIGPELCGRVINALGDPID 116
+ G+ V TG L V +GP + + + + P++
Sbjct: 58 LKVGEPVVSTGLPLAVELGPGMLNGIYDGIQRPLE 92
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop,
phenylalanine mutant, hydrolase; 2.35A {Pyrococcus
horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A
3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A
3sdz_A
Length = 588
Score = 148 bits (376), Expect = 7e-39
Identities = 100/427 (23%), Positives = 156/427 (36%), Gaps = 63/427 (14%)
Query: 24 EIYNQGKVISV----------FDGICQIYGLSNAMQGEMLEFPGNVFGLALNLERDSIGA 73
+ G +SV +DGI + + G+ + L + + I
Sbjct: 64 PVVGTGASLSVELGPRLLTSIYDGIQRPLEVIREKTGDFIARGVTAPALPRDKKWHFIPK 123
Query: 74 VILGKYEHITEGDIV-----------------KCTGRILEV-PIGPELCGRVINALGDPI 115
+G + + GDI+ G I+E+ G VI + P
Sbjct: 124 AKVG--DKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPS 181
Query: 116 DGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGK 175
+K P+ P + PL TG + ID+ P KG I G +GK
Sbjct: 182 GEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPAGSGK 240
Query: 176 SSIAIDIIINQKNKNVTC-IYVAIGQK-------ISSIKKTANLLEKYGAMPYTIIVAAT 227
+ + K + IY+ G++ + K + M T+++A T
Sbjct: 241 TVTQHQLA---KWSDAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANT 297
Query: 228 ASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYP 287
++ + + S Y+G TI EYFRD G D ++ D S+ A A R+IS L+ PG E YP
Sbjct: 298 SNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYP 357
Query: 288 GDIFYLHSRL---LERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTN 344
YL S+L ER+ RV + GS++ I + GD S V N
Sbjct: 358 A---YLASKLAEFYERAGRV--------VTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQN 406
Query: 345 VISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSN-------IRTDL 397
+ + LD+ L PAIN S S A + + K + L
Sbjct: 407 TLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMRDKAMALL 466
Query: 398 AQYRELA 404
+ EL
Sbjct: 467 QKESELQ 473
Score = 37.8 bits (88), Expect = 0.009
Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 27 NQGKVISVFDGICQIYGLSNAMQGEMLEF-PGNVFGLALNLERDSIGAVILGKYEHITEG 85
+G++I V + G+ A E++ + G + LE D + + + G
Sbjct: 3 AKGRIIRVTGPLVVADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPG 62
Query: 86 DIVKCTGRILEVPIGPELCGRVINALGDPID 116
+ V TG L V +GP L + + + P++
Sbjct: 63 EPVVGTGASLSVELGPRLLTSIYDGIQRPLE 93
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC
F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1
b.49.1.1 c.37.1.11
Length = 473
Score = 97.0 bits (242), Expect = 9e-22
Identities = 82/308 (26%), Positives = 134/308 (43%), Gaps = 18/308 (5%)
Query: 73 AVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKL-TAPIEK 131
+ + + + G V TG + VP+G GRV N LG+PID +G I PI +
Sbjct: 61 TIAMASTDGLIRGMEVIDTGAPISVPVGQVTLGRVFNVLGEPIDLEGDIPADARRDPIHR 120
Query: 132 VAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIIN-QKNKN 190
AP + E L+TGIK +D + P KG + + G GK+ + ++I N +
Sbjct: 121 PAPKFEELATEVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHG 180
Query: 191 VTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFR 250
++ +G++ + ++ G + T +V ++ + A +G T+ EYFR
Sbjct: 181 GISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALTGLTMAEYFR 240
Query: 251 DH-GKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYV 309
D G+D L+ D++ + A ++S LL R P Y + +L ER
Sbjct: 241 DEQGQDGLLFIDNIFRFTQAGSEVSALLGRMPSAIGYQPTLATEMGQLQERIT------- 293
Query: 310 ENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAIN 369
+ GS+T+I I A D + P S D L+ L GI PA++
Sbjct: 294 --------STAKGSITSIQAIYVPADDYTDPAPATTFSHLDATTNLERKLAEMGIYPAVD 345
Query: 370 AGISVSRV 377
+S SR
Sbjct: 346 PLVSTSRA 353
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP;
1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB:
1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D*
1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D*
2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Length = 482
Score = 88.5 bits (220), Expect = 6e-19
Identities = 67/230 (29%), Positives = 105/230 (45%), Gaps = 34/230 (14%)
Query: 73 AVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKV 132
+ + E + G V +G + +P+GPE GR++N +G+PID +GPIKTK A I
Sbjct: 64 TIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAE 123
Query: 133 APGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIIN-QKNKNV 191
AP + E L TGIK +D + P KG + + G GK+ + +++I N K
Sbjct: 124 APEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 183
Query: 192 TCIYVAIGQ------------KISSIKKTANLLEK----YGAM---PYTIIVAATASDSA 232
++ +G+ S + + K YG M P A
Sbjct: 184 YSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPP-----------GA 232
Query: 233 SMQFISAYSGCTIGEYFRDH-GKDALVVYDDLSKQAVAYRQISLLLKRPP 281
+ A +G T+ EYFRD G+D L+ D++ + A ++S LL R P
Sbjct: 233 RARV--ALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIP 280
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability,
potential tentoxin binding hydrolase; 3.20A {Spinacia
oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Length = 498
Score = 83.9 bits (208), Expect = 2e-17
Identities = 31/90 (34%), Positives = 48/90 (53%)
Query: 73 AVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKV 132
AV + + +T G V TG L VP+G GR+ N LG+P+D P+ T+ T+PI +
Sbjct: 76 AVAMSATDGLTRGMEVIDTGAPLSVPVGGPTLGRIFNVLGEPVDNLRPVDTRTTSPIHRS 135
Query: 133 APGVISRQSVSEPLQTGIKAIDSIVPIGKG 162
AP + +TGIK ++ + P +G
Sbjct: 136 APAFTQLDTKLSIFETGIKVVNLLAPYRRG 165
Score = 37.7 bits (88), Expect = 0.008
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 16/140 (11%)
Query: 239 AYSGCTIGEYFRDH-GKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRL 297
+ T+ EYFRD +D L+ D++ + A ++S LL R P Y + L
Sbjct: 250 GLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSL 309
Query: 298 LERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDS 357
ER + K GS+T+I + A D++ P + D L
Sbjct: 310 QERIT---------------STKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSR 354
Query: 358 SLFNSGIRPAINAGISVSRV 377
L GI PA++ S S +
Sbjct: 355 GLAAKGIYPAVDPLDSTSTM 374
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 69.9 bits (170), Expect = 1e-12
Identities = 84/574 (14%), Positives = 168/574 (29%), Gaps = 174/574 (30%)
Query: 12 IQEQIKNFNNTTE---IYNQGKVIS----VFDGICQIYGLSNAMQGEMLEFPGNVFGLAL 64
+Q+ K+ + E I +S +F + +Q +F V
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS-KQ-EEMVQ----KFVEEV----- 86
Query: 65 NLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTK 124
L + Y+ + I P + R+ D + + K
Sbjct: 87 -LRIN---------YKFLMS--------PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 125 LTAPIEKVAPGVISRQSVSEPLQTGIKAIDS---IVPIGKGQRELIIGDRQTGKSSIAID 181
+SR L+ + + ++ G G +GK+ +A+D
Sbjct: 129 YN----------VSRLQPYLKLRQALLELRPAKNVLIDGVL------G---SGKTWVALD 169
Query: 182 IIINQKNKNVTC-----IY-VAIGQKISSIKKTANLLEKYGAMPYTIIVAATA----SDS 231
+ + V C I+ + + +LE + Y I T+ S +
Sbjct: 170 VC---LSYKVQCKMDFKIFWLNLKNC----NSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 232 ASMQFISAYSGCTIGEYFRDHG-KDALVVYDDL-SKQAVAYRQISLLLKRPPGREAYPGD 289
++ S + + + ++ L+V ++ + +A +
Sbjct: 223 IKLRIHSIQAE--LRRLLKSKPYENCLLVLLNVQNAKAW--------------------N 260
Query: 290 IFYLHSRLL--ERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVIS 347
F L ++L R K V ++ + T T I + P V S
Sbjct: 261 AFNLSCKILLTTRF-----KQVTDFLSAATT------THISLDHHSMT----LTPDEVKS 305
Query: 348 ITDGQIF---LDSSLFN-----SGIRPAINAGISVSRVGGAAQIKFIK-----KLSSNIR 394
+ LD + P + I+ S G A K KL++ I
Sbjct: 306 -----LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 395 TDLAQ-----YREL-AAFSQFSSDLDLVTRKQL----------DRGARVTELLK----QK 434
+ L YR++ S F + L D V +L K +K
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAH-IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
Query: 435 QYSPLPVSLIAVILFAINKGFLDDIEI-KKILNFESSLYKFMKTCQNSILEKIKNVNEF- 492
Q +S+ + I + ++ + + I++ Y KT + L F
Sbjct: 420 QPKESTISIPS-IYLELKVKLENEYALHRSIVDH----YNIPKTFDSDDLIPPYLDQYFY 474
Query: 493 -----------NADIEDSLTTILINFKKSYDAKI 515
+ + + ++F + + KI
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDF-RFLEQKI 507
Score = 67.2 bits (163), Expect = 8e-12
Identities = 58/313 (18%), Positives = 95/313 (30%), Gaps = 76/313 (24%)
Query: 230 DSASMQFISAYSGCTIGEYFRDHGKDALVVYD--DLSKQAVAYRQISLLLKRPPGREAYP 287
++ Q Y I F D D D D+ K ++ +I ++
Sbjct: 10 ETGEHQ----YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG-- 63
Query: 288 GDIFYLHSRLLERSARVNIKYVE-----NY----TNGKVTGKTGSLTAIPIIETQA---G 335
L LL + + K+VE NY + K + S+ IE +
Sbjct: 64 --TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 336 DISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGG------AAQI----KF 385
D F NV S + L +L +RP + + V G A + K
Sbjct: 122 DNQVFAKYNV-SRLQPYLKLRQALLE--LRP--AKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 386 IKKLSSNIR-TDLAQYRE----LAAFSQFSSDLDLVTRKQLDRG-----------ARVTE 429
K+ I +L L + +D + D A +
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 430 LLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYKFMKTCQNSILEKIKNV 489
LLK K Y L+ + L +++ K N F +C+ + + K V
Sbjct: 237 LLKSKPY---ENCLL------V----LLNVQNAKAWN------AFNLSCKILLTTRFKQV 277
Query: 490 NEFNADIEDSLTT 502
D + TT
Sbjct: 278 ----TDFLSAATT 286
Score = 55.6 bits (133), Expect = 3e-08
Identities = 91/589 (15%), Positives = 170/589 (28%), Gaps = 202/589 (34%)
Query: 3 INASEISTIIQEQIKNFNNTTEIY--------NQGKVISVF--DGICQIYG-LSNAMQGE 51
++ EI II + + + Q +++ F + + Y L + ++ E
Sbjct: 46 LSKEEIDHIIMSK----DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE 101
Query: 52 MLEFPGNVFGLALNLERDSIGAVILGKYEHIT-EGDIVKCTGRILEVPIGPELCGRVINA 110
+ +R + KY +++ +K +LE+ + +I+
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKY-NVSRLQPYLKLRQALLELRPAKNV---LIDG 157
Query: 111 LGDPIDGKGPIKTKLTA------PIEKVAPGVI---------SRQSVSEPLQTGIKAIDS 155
+ G G KT + ++ I S ++V E LQ + ID
Sbjct: 158 VL----GSG--KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 156 ------------IVPIGKGQREL--IIGDRQTGKSSIAID----------------IIIN 185
+ I Q EL ++ + + + I++
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271
Query: 186 QKNKNVTCIYVAIGQKISSI---------KKTANLLEKY-------------GAMPYTI- 222
+ K VT A S+ + +LL KY P +
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 223 IVAATASDSASM-------------QFISA-------------YSGCTIGEYFRDHGK-- 254
I+A + D + I + + ++ F
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV---FPPSAHIP 388
Query: 255 -DALVVY-DDLSKQAVAYRQI-------SLLLKRPPGREAYPGDIFYLHSRLLERSARVN 305
L + D+ K V + SL+ K+P + S LE ++
Sbjct: 389 TILLSLIWFDVIKSDV--MVVVNKLHKYSLVEKQPKES------TISIPSIYLELKVKLE 440
Query: 306 IKY------VENYTNGKVTGKTGSLTAIPI--------------IETQAGDISAFVPTNV 345
+Y V++Y N T + L + IE ++ F
Sbjct: 441 NEYALHRSIVDHY-NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE-HPERMTLF----- 493
Query: 346 ISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAA----QIKFIKKLSSNIRTDLAQY- 400
+FLD IR + + + G Q+KF K I + +Y
Sbjct: 494 -----RMVFLDFRFLEQKIR---HDSTAWNASGSILNTLQQLKFYKPY---ICDNDPKYE 542
Query: 401 RELAAFSQF----------SSDLDLVTRKQL----DRGARVTELLKQKQ 435
R + A F S DL+ ++ + A E KQ Q
Sbjct: 543 RLVNAILDFLPKIEENLICSKYTDLL---RIALMAEDEAIFEEAHKQVQ 588
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.4 bits (138), Expect = 1e-08
Identities = 60/335 (17%), Positives = 108/335 (32%), Gaps = 121/335 (36%)
Query: 212 LEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYR 271
++ Y A + A F Y G +I + ++ L ++ K +
Sbjct: 1633 MDLYKTSK----AAQDVWNRADNHFKDTY-GFSILDIVINNPV-NLTIHFGGEKG----K 1682
Query: 272 QISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGK------TGSLT 325
+I RE Y IF E +GK+ + T
Sbjct: 1683 RI---------RENYSAMIF------------------ETIVDGKLKTEKIFKEINEHST 1715
Query: 326 AIPIIETQAGDISAFVPTNVISITDGQ--IFLDS-SLF----NSGIRP--AINAGISVSR 376
+ ++ G +SA T T Q + L + F + G+ P A AG S+
Sbjct: 1716 SY-TFRSEKGLLSA---T---QFT--QPALTLMEKAAFEDLKSKGLIPADATFAGHSL-- 1764
Query: 377 VGG--AAQIKFIKKLSSNIRTDLAQYRELAAFSQ---FSSDLDLVTRKQLDRGARVTELL 431
G AA LA+ + S +++V RG + +
Sbjct: 1765 --GEYAA---------------------LASLADVMSIESLVEVV-FY---RGMTMQVAV 1797
Query: 432 KQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYKFMKTCQNSILEKIKNVNE 491
+ + +IA+ + F + ++ ++ +T ++E I VN
Sbjct: 1798 PRDELGRSNYGMIAINPGRVAASFSQE-ALQYVVERVGK-----RT--GWLVE-I--VN- 1845
Query: 492 FNA---------DIE--DSLTTILINFKKSYDAKI 515
+N D+ D++T +L NF K KI
Sbjct: 1846 YNVENQQYVAAGDLRALDTVTNVL-NFIKL--QKI 1877
Score = 45.4 bits (107), Expect = 4e-05
Identities = 26/134 (19%), Positives = 50/134 (37%), Gaps = 25/134 (18%)
Query: 365 RP------AINAGISVSR--VGGAAQIK--FIKKLSSNIRTDLAQYRELAAFSQFSSDLD 414
RP ++ + V A+Q++ F K L T+ AA + ++ +
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPE--PTE-----GFAADDEPTTPAE 59
Query: 415 LVTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYKF 474
LV + L + + E K Q+ ++ + L +L+ +I + + L +
Sbjct: 60 LVGK-FLGYVSSLVEPSKVGQFDQ----VLNLCLTEFENCYLEGNDIHALA---AKLLQE 111
Query: 475 MKTCQNSILEKIKN 488
T E IKN
Sbjct: 112 NDTTLVKTKELIKN 125
Score = 38.5 bits (89), Expect = 0.006
Identities = 86/534 (16%), Positives = 151/534 (28%), Gaps = 187/534 (35%)
Query: 82 ITEGDIVKCTGRILEVP-----IGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAP-- 134
++ G + + L VP I +L + L +P +G + T P E V
Sbjct: 11 LSHGSL-EHV---LLVPTASFFIASQLQEQFNKILPEPTEGFAA-DDEPTTPAELVGKFL 65
Query: 135 GVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQT----GKS--SIA------IDI 182
G +S EP + G D ++ L + + + G ++A D
Sbjct: 66 GYVSSLV--EPSKVG--QFDQVL-------NLCLTEFENCYLEGNDIHALAAKLLQENDT 114
Query: 183 IINQKNKNVTCIYVA---IGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASM----- 234
+ + + + A + +A L A +A +
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSA-LFR------------AVGEGNAQLVAIFG 161
Query: 235 -QFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYP---GDI 290
Q G +YF ++L Y + Y GD+
Sbjct: 162 GQ------G-NTDDYF-----------EELRDL---Y-------------QTYHVLVGDL 187
Query: 291 FYLHSRLLERSARVNIKYVENYTNG----------KVTGKTGSLTAIPI----IE-TQAG 335
+ L R + + +T G T L +IPI I Q
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLA 247
Query: 336 ------DISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSR------------- 376
+ F P + S G ++ + G+ A I+ +
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKG-----ATGHSQGLVTA--VAIAETDSWESFFVSVRKAI 300
Query: 377 -----VGGAAQIKF-IKKLSSNIRTDLAQYRELAAFSQFS-SDLDLVTRKQLDRGARVT- 428
+G + L +I D + E S S+L T++Q+ T
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL---TQEQVQDYVNKTN 357
Query: 429 -ELLKQKQYSPLPVSLI-----AVI------LFAINKGFLDDIEIKKILNFESSLYKFMK 476
L KQ +SL+ V+ L+ +N + K + S F +
Sbjct: 358 SHLPAGKQVE---ISLVNGAKNLVVSGPPQSLYGLNLTLR---KAKAPSGLDQSRIPFSE 411
Query: 477 TCQNSILEKIKNVNEF---------------NADIEDSLTTILINFKKSYDAKI 515
K+K N F + I L ++F D +I
Sbjct: 412 -------RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAK-DIQI 457
Score = 32.7 bits (74), Expect = 0.40
Identities = 23/133 (17%), Positives = 39/133 (29%), Gaps = 35/133 (26%)
Query: 105 GRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQR 164
G + P D G + A + PG ++ E LQ ++ +
Sbjct: 1790 GMTMQVA-VPRDELGRSNYGMIA----INPGRVAASFSQEALQYVVERVG---------- 1834
Query: 165 ELIIGDRQTGKS-SIAIDIIINQKNKNV-TCIYVAIGQKISSIKKTANLLEKYGAMPYTI 222
++TG I N NV YV + ++ N+L
Sbjct: 1835 ------KRTGWLVEIV--------NYNVENQQYV-AAGDLRALDTVTNVLNFIKLQK--- 1876
Query: 223 IVAATASDSASMQ 235
I S S++
Sbjct: 1877 IDIIELQKSLSLE 1889
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA
capture mechanism, ATP-binding, hydrolase,
nucleotide-binding, RN binding; 2.35A {Thermotoga
maritima}
Length = 427
Score = 37.2 bits (87), Expect = 0.012
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 153 IDSIVPIGKGQRELIIGDRQTGKS----SIAIDIIIN 185
ID PIGKGQR +I+ + GK+ IA I N
Sbjct: 166 IDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAEN 202
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.014
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 17/46 (36%)
Query: 200 QKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTI 245
+K ++KK L+ Y A DSA I A T+
Sbjct: 18 EK-QALKKLQASLKLY------------ADDSAPALAIKA----TM 46
Score = 34.2 bits (77), Expect = 0.037
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 11/36 (30%)
Query: 118 KGPIKTKLTAPIEKVAPGVISRQSVSEP-LQTGIKA 152
K +K KL A ++ A S P L IKA
Sbjct: 19 KQALK-KLQASLKLYADD-------SAPAL--AIKA 44
Score = 29.1 bits (64), Expect = 1.9
Identities = 7/22 (31%), Positives = 10/22 (45%), Gaps = 4/22 (18%)
Query: 355 LDSSL--FNSGIRPA--INAGI 372
L +SL + PA I A +
Sbjct: 25 LQASLKLYADDSAPALAIKATM 46
Score = 29.1 bits (64), Expect = 2.0
Identities = 6/38 (15%), Positives = 14/38 (36%), Gaps = 11/38 (28%)
Query: 460 EIKKILNFESSLYKFMKTCQNSILEKIKNVNEFNADIE 497
+KK+ ++SL + ++ A +E
Sbjct: 21 ALKKL---QASLKLYADDSAPAL--------AIKATME 47
>3ice_A Transcription termination factor RHO; transcription, ATPase,
hexamer, helicase, RNA, RECA, OB fold ATP-binding,
hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli
k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Length = 422
Score = 36.8 bits (86), Expect = 0.016
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 153 IDSIVPIGKGQRELIIGDRQTGKS----SIAIDIIIN 185
+D PIG+GQR LI+ + GK+ +IA I N
Sbjct: 165 LDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYN 201
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 34.9 bits (80), Expect = 0.061
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 9/92 (9%)
Query: 122 KTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIG--KGQRELIIGDRQTGKSSIA 179
++T+P I++ ++T I+ D I G G+ L+ G TGK+ +
Sbjct: 3 SAEMTSPNNNSEHQAIAK------MRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFS 56
Query: 180 IDIIINQ-KNKNVTCIYVAIGQKISSIKKTAN 210
I + N + ++V + I K A
Sbjct: 57 IQFLYNGIIEFDEPGVFVTFEETPQDIIKNAR 88
Score = 31.0 bits (70), Expect = 1.1
Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 2/92 (2%)
Query: 123 TKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIG--KGQRELIIGDRQTGKSSIAI 180
T I + ++++S + + +G+ +D + G K L G TGK+ +
Sbjct: 240 TDHGINIFPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVS 299
Query: 181 DIIINQKNKNVTCIYVAIGQKISSIKKTANLL 212
+ N I A + + + + A
Sbjct: 300 RFVENACANKERAILFAYEESRAQLLRNAYSW 331
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 33.3 bits (76), Expect = 0.12
Identities = 15/77 (19%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 136 VISRQSVSEPLQTGIKAIDSIVPIG--KGQRELIIGDRQTGKSSIAIDIIINQ-KNKNVT 192
+++ Q V +++GI D ++ G +G L+ G TGK++ A I +
Sbjct: 3 IMAYQPV-RRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEP 61
Query: 193 CIYVAIGQKISSIKKTA 209
++V + ++ +++
Sbjct: 62 GVFVTLEERARDLRREM 78
>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics,
PSI, protein STRU initiative; 2.66A {Mycobacterium
tuberculosis} SCOP: c.2.1.1
Length = 198
Score = 31.8 bits (73), Expect = 0.34
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 14/90 (15%)
Query: 361 NSGIRPAINAGISVSRVGGAAQIKFI---KK-LSSNIRTDLAQYRELAAFSQFSSDLDLV 416
NS AI G+ + GG +FI KK + ++ LA + A+FS DLDL
Sbjct: 113 NSLAGEAIQRGVQILAPGG----RFIELGKKDVYADASLGLAALAKSASFSVV--DLDLN 166
Query: 417 TRKQLDRGAR----VTELLKQKQYSPLPVS 442
+ Q R + + + + + LPV+
Sbjct: 167 LKLQPARYRQLLQHILQHVADGKLEVLPVT 196
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 30.0 bits (68), Expect = 1.6
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 142 VSEPLQTGIKAIDSIVPIG--KGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIG 199
++ ++TGI +D I+ G + L+ G TGK+ + + N IYVA+
Sbjct: 1 MTRRVKTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60
Query: 200 QKISSIKKTA 209
+ +++
Sbjct: 61 EHPVQVRQNM 70
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation,
exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB:
4a4k_A
Length = 997
Score = 30.2 bits (67), Expect = 1.8
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 8/61 (13%)
Query: 82 ITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQS 141
EG +V+ + E+C V A I G + K++ E + ++ S
Sbjct: 943 EAEGTVVRVITWLD------EICREVKTAS--IIIGNSTLHMKMSRAQELIKRDIVFAAS 994
Query: 142 V 142
+
Sbjct: 995 L 995
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH
domain-like fold, structural genomics, joint CENT
structural genomics; HET: MSE; 1.90A {Syntrophus
aciditrophicus}
Length = 191
Score = 29.2 bits (65), Expect = 2.5
Identities = 12/79 (15%), Positives = 24/79 (30%), Gaps = 10/79 (12%)
Query: 193 CIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGE---YF 249
V IG + + ++ + T + + + CT G
Sbjct: 27 APGVLIGGFMVDL-----AVKNLPEGILYDAICET--RTCLPDAVQLLTPCTFGNGWLTV 79
Query: 250 RDHGKDALVVYDDLSKQAV 268
G A+ +YD + + V
Sbjct: 80 LPMGLFAVSLYDKFTGEGV 98
>3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural
genomics, NYSGXRC, target 9284B, enolase family, PSI-2;
2.60A {Bordetella bronchiseptica}
Length = 392
Score = 29.2 bits (66), Expect = 3.3
Identities = 9/65 (13%), Positives = 13/65 (20%), Gaps = 10/65 (15%)
Query: 202 ISSIKKTANLLEKYGA-----MPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDA 256
S A + G I AS ++A G D
Sbjct: 288 FSGCLPVARAVVAAGLRYCPHYLGAGIGLQ-----ASAHLLAAVPGLASPGLLGVDANDN 342
Query: 257 LVVYD 261
+
Sbjct: 343 PLRSL 347
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase,
tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A
{Saccharomyces cerevisiae}
Length = 1010
Score = 29.4 bits (65), Expect = 4.2
Identities = 11/64 (17%), Positives = 29/64 (45%), Gaps = 14/64 (21%)
Query: 82 ITEGDIVKCTGRILEVPIGPELCGRVINA---LGDPIDGKGPIKTKLTAPIEKVAPGVIS 138
+ EG +++ R+ EL +++ +G+ +K K+ A ++ + ++S
Sbjct: 956 VYEGSLIRMFKRLE------ELVKELVDVANTIGNS-----SLKEKMEAVLKLIHRDIVS 1004
Query: 139 RQSV 142
S+
Sbjct: 1005 AGSL 1008
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix,
antiparallel-coiled-COI domain, ATP-binding, helicase,
hydrolase; 3.39A {Saccharomyces cerevisiae}
Length = 1108
Score = 29.0 bits (64), Expect = 4.2
Identities = 11/64 (17%), Positives = 29/64 (45%), Gaps = 14/64 (21%)
Query: 82 ITEGDIVKCTGRILEVPIGPELCGRVINA---LGDPIDGKGPIKTKLTAPIEKVAPGVIS 138
+ EG +++ R+ EL +++ +G+ +K K+ A ++ + ++S
Sbjct: 1054 VYEGSLIRMFKRLE------ELVKELVDVANTIGNS-----SLKEKMEAVLKLIHRDIVS 1102
Query: 139 RQSV 142
S+
Sbjct: 1103 AGSL 1106
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Length = 235
Score = 28.4 bits (64), Expect = 4.5
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 146 LQTGIKAIDSI----VPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQK 201
L TGI D + +P +G + G+ TGK+ ++ I CIYV +
Sbjct: 5 LSTGILDFDKLIQGGIP--QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES 62
Query: 202 ISSIKKTA 209
SI + A
Sbjct: 63 RDSIIRQA 70
>3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily
member, M-xylarate, U function; HET: DXL; 1.30A
{Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A*
Length = 389
Score = 28.4 bits (64), Expect = 5.6
Identities = 8/56 (14%), Positives = 16/56 (28%), Gaps = 10/56 (17%)
Query: 202 ISSIKKTANLLEKYGAM-----PYTIIVAATASDSASMQFISAYSGCTIGEYFRDH 252
I+ + II A A++ ++A + E+ H
Sbjct: 284 ITEALAISASAASAHLAWNPHTFNDIITVA-----ANLHLVAASPHPAMFEWDITH 334
>3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural
genomics, PSI-2, protein struc initiative; 2.70A
{Polaromonas SP}
Length = 428
Score = 28.5 bits (64), Expect = 5.6
Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 10/56 (17%)
Query: 202 ISSIKKTANLLEKYGAM-----PYTIIVAATASDSASMQFISAYSGCTIGEYFRDH 252
I+ + A + Y T + A A++ F++A E
Sbjct: 318 ITEGIRIAAMASAYRIPINAHSSATGLNHA-----ATIHFLAATENAGYFEACVSK 368
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.34A {Sinorhizobium meliloti}
Length = 387
Score = 28.2 bits (63), Expect = 6.8
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 245 IGEYFRDHGKDALVVYDDLSKQAVA 269
+ Y GK ALV+ D + A++
Sbjct: 44 LAAYLAPLGKRALVLIDRVLFDALS 68
>2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel,
octamer, structural genomics, PSI; 1.80A {Bacillus
subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A
Length = 382
Score = 28.0 bits (63), Expect = 7.9
Identities = 4/67 (5%), Positives = 15/67 (22%), Gaps = 10/67 (14%)
Query: 202 ISSIKKTANLLEKYGA-----MPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDA 256
I + L +G + ++ + + + +
Sbjct: 273 IDEFRDCLQLARYFGVRASAHAYDGSLSRL-----YALFAQACLPPWSKMKNDHIEPIEW 327
Query: 257 LVVYDDL 263
V+ +
Sbjct: 328 DVMENPF 334
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp
loader, sliding clamp, primer-TEM DNA, DNA binding
protein-DNA complex; HET: DNA ADP 08T; 3.20A
{Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Length = 324
Score = 27.7 bits (62), Expect = 8.4
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 1 MKINASE--ISTIIQEQIKNFNNTTEIYNQGKVI 32
M +N S+ I + + + NF + + KVI
Sbjct: 77 MFVNGSDCKIDFV-RGPLTNFASAASFDGRQKVI 109
>3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein;
structural genomics, protein structure initiative; HET:
RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A
Length = 433
Score = 28.1 bits (63), Expect = 9.2
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 10/62 (16%)
Query: 202 ISSIKKTANLLEKYGAM-----PYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDA 256
I +KK A + E Y A + A A++ F ++ + E DA
Sbjct: 291 IWEMKKVAAMAEVYNAQMAPHLYAGPVEWA-----ANVHFAASIPNILMCESIETPFHDA 345
Query: 257 LV 258
L+
Sbjct: 346 LI 347
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.377
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,693,546
Number of extensions: 486984
Number of successful extensions: 1163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1134
Number of HSP's successfully gapped: 66
Length of query: 515
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 417
Effective length of database: 3,965,535
Effective search space: 1653628095
Effective search space used: 1653628095
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.1 bits)