RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2894
(515 letters)
>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1
ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
Length = 285
Score = 361 bits (928), Expect = e-123
Identities = 191/295 (64%), Positives = 234/295 (79%), Gaps = 19/295 (6%)
Query: 96 EVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDS 155
+VP+G EL GRV++ALG+ IDGKGPI +K + APG+I R SV EP+QTGIKA+DS
Sbjct: 2 DVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDS 61
Query: 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIINQK--------NKNVTCIYVAIGQKISSIKK 207
+VPIG+GQRELIIGDRQTGK+SIAID IINQK K + CIYVAIGQK S++ +
Sbjct: 62 LVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQ 121
Query: 208 TANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQA 267
L AM YTI+V+ATASD+A +Q+++ YSGC++GEYFRD+GK AL++YDDLSKQA
Sbjct: 122 LVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQA 181
Query: 268 VAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAI 327
VAYRQ+SLLL+RPPGREAYPGD+FYLHSRLLER+A++N GSLTA+
Sbjct: 182 VAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDA-----------FGGGSLTAL 230
Query: 328 PIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQ 382
P+IETQAGD+SA++PTNVISITDGQIFL++ LF GIRPAIN G+SVSRVG AAQ
Sbjct: 231 PVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQ 285
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 335 bits (862), Expect = e-114
Identities = 79/291 (27%), Positives = 131/291 (45%), Gaps = 23/291 (7%)
Query: 95 LEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAID 154
+ +P+GPE GR++N +G+PID +GPIKTK A I AP + E L TGIK +D
Sbjct: 1 IRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVD 60
Query: 155 SIVPIGKGQRELIIGDRQTGKSSIAIDIIIN-QKNKNVTCIYVAIGQKISSIKKTANLLE 213
+ P KG + + G GK+ + +++I N K ++ +G++ + +
Sbjct: 61 LLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMI 120
Query: 214 KYG------AMPYTIIVAATASDSASMQFISAYSGCTIGEYFRD-HGKDALVVYDDLSKQ 266
+ G A +V ++ + A +G T+ EYFRD G+D L+ D++ +
Sbjct: 121 ESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRF 180
Query: 267 AVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTA 326
A ++S LL R P Y + + ER K GS+T+
Sbjct: 181 TQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITT---------------TKKGSITS 225
Query: 327 IPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRV 377
+ I A D++ P + D L ++ GI PA++ S SR+
Sbjct: 226 VQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRI 276
>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1
ATP synthase {Spinach (Spinacia oleracea), chloroplast
[TaxId: 3562]}
Length = 276
Score = 333 bits (855), Expect = e-113
Identities = 169/286 (59%), Positives = 215/286 (75%), Gaps = 11/286 (3%)
Query: 97 VPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSI 156
+P+ GRVINAL PIDG+G I + IE APG++SR+SV EPLQTG+ AID++
Sbjct: 2 IPVSEAYLGRVINALAKPIDGRGEITASESRLIESPAPGIMSRRSVYEPLQTGLIAIDAM 61
Query: 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYG 216
+P+G+GQRELIIGDRQTGK+++A D I+NQ+ +NV C+YVAIGQK SS+ + ++ G
Sbjct: 62 IPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKASSVAQVVTNFQERG 121
Query: 217 AMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLL 276
AM YTI+VA TA A++Q+++ Y+G + EYF + L++YDDLSKQA AYRQ+SLL
Sbjct: 122 AMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLL 181
Query: 277 LKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGD 336
L+RPPGREAYPGD+FYLHSRLLER GS+TA+PI+ETQAGD
Sbjct: 182 LRRPPGREAYPGDVFYLHSRLLER-----------AAKLSSLLGEGSMTALPIVETQAGD 230
Query: 337 ISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQ 382
+SA++PTNVISITDGQIFL + LFN+GIRPAIN GISVSRVG AAQ
Sbjct: 231 VSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQ 276
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho,
ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 180 bits (457), Expect = 2e-53
Identities = 38/263 (14%), Positives = 86/263 (32%), Gaps = 19/263 (7%)
Query: 143 SEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKI 202
+ +D PIG+GQR LI+ + GK+ + +I + + C+ + +
Sbjct: 24 GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL--- 80
Query: 203 SSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDD 262
I + + + + +VA+T + AS A + +H KD +++ D
Sbjct: 81 --IDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDS 138
Query: 263 LSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTG 322
+++ A AY + + + + R + V
Sbjct: 139 ITRLARAYNTVVPASGKVL-TGGVDANALHRPKRFFGAA-------------RNVEEGGS 184
Query: 323 SLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQ 382
+ + + + ++ L + + PAI+ S +R
Sbjct: 185 LTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLT 244
Query: 383 IKFIKKLSSNIRTDLAQYRELAA 405
+ + +R + E+ A
Sbjct: 245 TQEELQKMWILRKIIHPMGEIDA 267
>d2jdia1 a.69.1.1 (A:380-510) F1 ATP synthase alpha subunit, domain
3 {Cow (Bos taurus) [TaxId: 9913]}
Length = 131
Score = 136 bits (344), Expect = 4e-39
Identities = 48/130 (36%), Positives = 83/130 (63%)
Query: 384 KFIKKLSSNIRTDLAQYRELAAFSQFSSDLDLVTRKQLDRGARVTELLKQKQYSPLPVSL 443
+ +K+++ ++ +LAQYRE+AAF+QF SDLD T++ L RG R+TELLKQ QYSP+ +
Sbjct: 2 RAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEE 61
Query: 444 IAVILFAINKGFLDDIEIKKILNFESSLYKFMKTCQNSILEKIKNVNEFNADIEDSLTTI 503
+++A +G+LD +E KI FE++ + + ++L KI+ + + + + L I
Sbjct: 62 QVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRTDGKISEESDAKLKEI 121
Query: 504 LINFKKSYDA 513
+ NF ++A
Sbjct: 122 VTNFLAGFEA 131
>d1fx0a1 a.69.1.1 (A:373-501) F1 ATP synthase alpha subunit, domain
3 {Spinach (Spinacia oleracea), chloroplast [TaxId:
3562]}
Length = 129
Score = 132 bits (334), Expect = 1e-37
Identities = 44/129 (34%), Positives = 73/129 (56%)
Query: 383 IKFIKKLSSNIRTDLAQYRELAAFSQFSSDLDLVTRKQLDRGARVTELLKQKQYSPLPVS 442
IK +KK++ ++ +LAQ+ EL AF+QF+SDLD T+ QL RG R+ ELLKQ Q +PL V
Sbjct: 1 IKAMKKVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQPQSAPLTVE 60
Query: 443 LIAVILFAINKGFLDDIEIKKILNFESSLYKFMKTCQNSILEKIKNVNEFNADIEDSLTT 502
+ ++ G+LD +E+ ++ + L ++KT + E I + F + E L
Sbjct: 61 EQVMTIYTGTNGYLDSLELDQVRKYLVELRTYVKTNKPEFQEIISSTKTFTEEAEALLKE 120
Query: 503 ILINFKKSY 511
+ + +
Sbjct: 121 AIQEQMERF 129
>d1skyb1 a.69.1.1 (B:372-502) F1 ATP synthase alpha subunit, domain
3 {Bacillus sp., strain ps3 [TaxId: 1409]}
Length = 131
Score = 131 bits (331), Expect = 3e-37
Identities = 52/129 (40%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 383 IKFIKKLSSNIRTDLAQYRELAAFSQFSSDLDLVTRKQLDRGARVTELLKQKQYSPLPVS 442
IK +KK++ +R DLA YREL AF+QF SDLD T+ + RGAR E+LKQ + P+PV
Sbjct: 1 IKAMKKVAGTLRLDLAAYRELEAFAQFGSDLDKATQANVARGARTVEVLKQDLHQPIPVE 60
Query: 443 LIAVILFAINKGFLDDIEIKKILNFESSLYKFMKTCQNSILEKIKNVNEFNADIEDSLTT 502
+I++A+ +GFLDDI ++ + FE Y ++ +LE I+ + ED L
Sbjct: 61 KQVLIIYALTRGFLDDIPVEDVRRFEKEFYLWLDQNGQHLLEHIRTTKDL--PNEDDLNQ 118
Query: 503 ILINFKKSY 511
+ FKK++
Sbjct: 119 AIEAFKKTF 127
>d1skyb2 b.49.1.1 (B:21-95) F1 ATP synthase alpha subunit, domain
1 {Bacillus sp., strain ps3 [TaxId: 1409]}
Length = 75
Score = 106 bits (267), Expect = 6e-29
Identities = 37/72 (51%), Positives = 49/72 (68%)
Query: 24 EIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPGNVFGLALNLERDSIGAVILGKYEHIT 83
++ + G VI V DGI + +GL N M GE +EF V G+ALNLE +++G VILG Y I
Sbjct: 4 QVSDVGTVIQVGDGIARAHGLDNVMSGEAVEFANAVMGMALNLEENNVGIVILGPYTGIK 63
Query: 84 EGDIVKCTGRIL 95
EGD V+ TGRI+
Sbjct: 64 EGDEVRRTGRIM 75
>d1fx0a2 b.49.1.1 (A:25-96) F1 ATP synthase alpha subunit, domain
1 {Spinach (Spinacia oleracea), chloroplast [TaxId:
3562]}
Length = 72
Score = 105 bits (264), Expect = 2e-28
Identities = 33/71 (46%), Positives = 46/71 (64%)
Query: 24 EIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPGNVFGLALNLERDSIGAVILGKYEHIT 83
++ N G V+ V DGI +I+GL M GE++EF G+ALNLE +++G V++G I
Sbjct: 1 KVVNTGTVLQVGDGIARIHGLDEVMAGELVEFEEGTIGIALNLESNNVGVVLMGDGLMIQ 60
Query: 84 EGDIVKCTGRI 94
EG VK TGRI
Sbjct: 61 EGSSVKATGRI 71
>d2jdia2 b.49.1.1 (A:24-94) F1 ATP synthase alpha subunit, domain
1 {Cow (Bos taurus) [TaxId: 9913]}
Length = 71
Score = 103 bits (260), Expect = 6e-28
Identities = 32/71 (45%), Positives = 48/71 (67%)
Query: 24 EIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPGNVFGLALNLERDSIGAVILGKYEHIT 83
++ G+V+S+ DGI +++GL N EM+EF + G++LNLE D++G V+ G + I
Sbjct: 1 DLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIK 60
Query: 84 EGDIVKCTGRI 94
EGDIVK TG I
Sbjct: 61 EGDIVKRTGAI 71
>d2glza1 d.81.3.1 (A:3-151) FwdE-like protein DSY1837 (Dhaf_2201)
{Desulfitobacterium hafniense [TaxId: 49338]}
Length = 149
Score = 32.5 bits (74), Expect = 0.054
Identities = 11/81 (13%), Positives = 28/81 (34%), Gaps = 10/81 (12%)
Query: 193 CIYVAIGQKISSIKKTANLLEKYGAMP--YTIIVAATASDSASMQFISAYSGCTIGE--- 247
C +A+G +I+ + + G P + + + S ++ I + TIG
Sbjct: 17 CPDIALGYRIAQL-----AQREMGIRPAPDSECLVKAYTQSCALDAIQVLNKATIGRHAL 71
Query: 248 YFRDHGKDALVVYDDLSKQAV 268
+ + + ++
Sbjct: 72 IIEETHRYMYQFHFTGTQDIH 92
>d2gvia1 d.81.3.1 (A:1-168) Uncharacterized protein Ta1109
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 168
Score = 31.8 bits (72), Expect = 0.096
Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 15/105 (14%)
Query: 193 CIYVAIGQKISSIKKTANLLEKYGAMP-------YTIIVAATASDSASMQFISAYSGCTI 245
C Y+ +G + S L+ G ++ + A +GCT
Sbjct: 20 CPYMPMGYRAGSY-----ALKIAGLEKEKDHRTYLLSEMSPEDMNGCFNDGAQAATGCTY 74
Query: 246 GE---YFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYP 287
G+ +GK AL++Y K + + S + + +
Sbjct: 75 GKGLFSLLGYGKLALILYRPGRKAIRVHVRNSFMDELSTRASDFF 119
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 31.6 bits (70), Expect = 0.20
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 139 RQSVSEPLQTGIKAIDSIVP--IGKGQRELIIGDRQTGKSSIAIDIIINQKNKN 190
R+S L TG K +D+++ + G + G+ +TGKS + + + +
Sbjct: 9 RRSELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPL 62
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 31.1 bits (69), Expect = 0.22
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 139 RQSVSEPLQTGIKAIDSIVPIG--KGQRELIIGDRQTGKSSIAIDIIIN-QKNKNVTCIY 195
Q++ ++T I+ D I G G+ L+ G TGK+ +I + N + ++
Sbjct: 2 HQAI-AKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVF 60
Query: 196 VAIGQKISSIKKTA 209
V + I K A
Sbjct: 61 VTFEETPQDIIKNA 74
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal
domain {Clostridium acetobutylicum [TaxId: 1488]}
Length = 141
Score = 29.7 bits (66), Expect = 0.46
Identities = 15/113 (13%), Positives = 36/113 (31%), Gaps = 2/113 (1%)
Query: 158 PIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGA 217
P G E+I+G +GKS I I K +I + +++ G
Sbjct: 3 PKDHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQV--FKPEIDNRYSKEDVVSHMGE 60
Query: 218 MPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAY 270
+ + + + + ++F D + + + ++ +
Sbjct: 61 KEQAVAIKNSREILKYFEEDTEVIAIDEVQFFDDEIVEIVNKIAESGRRVICA 113
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 29.9 bits (66), Expect = 0.59
Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Query: 146 LQTGIKAIDSIVPIG--KGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKIS 203
+ +G+ +D + G K L G TGK+ + + N I A + +
Sbjct: 8 VSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRA 67
Query: 204 SIKKTANLL 212
+ + A
Sbjct: 68 QLLRNAYSW 76
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 28.8 bits (63), Expect = 1.5
Identities = 7/46 (15%), Positives = 14/46 (30%), Gaps = 1/46 (2%)
Query: 146 LQTGIKAIDSIVP-IGKGQRELIIGDRQTGKSSIAIDIIINQKNKN 190
L +G I+ G+ ++ GKS+ +
Sbjct: 18 LFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAM 63
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens)
[TaxId: 9606]}
Length = 273
Score = 28.0 bits (62), Expect = 2.3
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 266 QAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNI 306
Q++A + +L+K P G+E GD F + + R+ I
Sbjct: 227 QSLACGKARVLIKSPKGKEVEDGDKFIFNGEFKHKLFRIKI 267
>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast
(Saccharomyces cerevisiae), Gal6 [TaxId: 4932]}
Length = 458
Score = 27.6 bits (61), Expect = 3.6
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Query: 209 ANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAV 268
NL++KYG +P + S +AS ++ S + + A + L +++
Sbjct: 154 LNLVKKYGLIPKDLYGDLPYSTTASRKWNSLLT--------TKLREFAETLRTALKERSA 205
Query: 269 AYRQISLLLKRP 280
I L ++
Sbjct: 206 DDSIIVTLREQM 217
>d1jjta_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas
aeruginosa, IMP-1 [TaxId: 287]}
Length = 220
Score = 27.2 bits (59), Expect = 3.8
Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 1/68 (1%)
Query: 129 IEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKN 188
IEK+ GV S E G+ +V + +I T K + + ++
Sbjct: 7 IEKLDEGVYVHTSFEEVNGWGVVPKHGLV-VLVNAEAYLIDTPFTAKDTEKLVTWFVERG 65
Query: 189 KNVTCIYV 196
+
Sbjct: 66 YKIKGSIS 73
>d2o14a1 b.18.1.32 (A:14-159) Hypothetical protein YxiM {Bacillus
subtilis [TaxId: 1423]}
Length = 146
Score = 26.4 bits (58), Expect = 5.0
Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 327 IPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRV 377
+ + G T I +TDGQ+ L + +G ++A + + ++
Sbjct: 95 VFQVINMTG--DGAEDTFQIPVTDGQLNLLVTEGKAGTAFTLSA-LKIKKL 142
>d1k5db_ b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 146
Score = 26.4 bits (58), Expect = 5.1
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 462 KKILNFESSLYKFMKTCQNSILEK--IKNVNEFNADIEDSLTTILINFKKSYDAK 514
K N + M+ N+ ++ + N + AD + I F + +A+
Sbjct: 76 KICANH--YITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQ 128
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 26.9 bits (58), Expect = 5.2
Identities = 14/150 (9%), Positives = 34/150 (22%), Gaps = 5/150 (3%)
Query: 166 LIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVA 225
+++GD GK+ + I N + L +
Sbjct: 9 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR 68
Query: 226 ATASDSASMQFISAYSGCTIGEYF---RDHGKDALVVYDDLSKQAVAYRQISLLLKRPPG 282
F R + + + + ++ L +
Sbjct: 69 LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTI 128
Query: 283 REAYPGDIFYLHSRLLERSARV--NIKYVE 310
+ + + A+ +KY+E
Sbjct: 129 EKLKEKKLTPITYPQGLAMAKEIGAVKYLE 158
>d1kq3a_ e.22.1.2 (A:) Glycerol dehydrogenase {Thermotoga maritima
[TaxId: 2336]}
Length = 364
Score = 27.3 bits (59), Expect = 5.4
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 245 IGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKR 279
+ E G+ A VV DD + V +
Sbjct: 22 LEEELSRFGERAFVVIDDFVDKNVLGENFFSSFTK 56
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 26.2 bits (57), Expect = 6.4
Identities = 8/36 (22%), Positives = 19/36 (52%)
Query: 161 KGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYV 196
+GQ ++I+G +GKS+ + + + C+ +
Sbjct: 1 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVI 36
>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain
{Deinococcus radiodurans [TaxId: 1299]}
Length = 268
Score = 26.8 bits (59), Expect = 6.5
Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 144 EPLQTGIKAIDSIVPIGKGQRE---LIIGDRQTGKSSIAIDIIINQKNKNVTCIYV 196
+ + TG ++D + +G R I G GK+++A+ I+ + TC ++
Sbjct: 36 QVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFI 91
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.377
Gapped
Lambda K H
0.267 0.0576 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,831,180
Number of extensions: 87520
Number of successful extensions: 297
Number of sequences better than 10.0: 1
Number of HSP's gapped: 288
Number of HSP's successfully gapped: 31
Length of query: 515
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 426
Effective length of database: 1,185,626
Effective search space: 505076676
Effective search space used: 505076676
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.3 bits)