Query psy2895
Match_columns 293
No_of_seqs 234 out of 2142
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 20:20:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2895.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2895hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12928 lipoyl synthase; Prov 100.0 4.5E-54 9.6E-59 380.4 30.2 283 7-290 7-289 (290)
2 TIGR00510 lipA lipoate synthas 100.0 9.8E-54 2.1E-58 378.7 28.4 281 10-292 13-294 (302)
3 PLN02428 lipoic acid synthase 100.0 1E-52 2.2E-57 376.0 28.7 282 9-292 46-334 (349)
4 PTZ00413 lipoate synthase; Pro 100.0 1.9E-52 4.1E-57 371.9 27.1 279 12-292 91-382 (398)
5 COG0320 LipA Lipoate synthase 100.0 2.7E-52 5.8E-57 351.4 24.0 282 9-292 19-300 (306)
6 PRK05481 lipoyl synthase; Prov 100.0 9.5E-49 2E-53 347.3 29.8 282 9-292 2-283 (289)
7 KOG2672|consensus 100.0 4.1E-42 8.9E-47 289.2 19.7 280 11-292 57-343 (360)
8 COG0621 MiaB 2-methylthioadeni 100.0 8.9E-34 1.9E-38 260.3 24.6 239 9-252 86-343 (437)
9 PRK08444 hypothetical protein; 100.0 3.5E-34 7.5E-39 259.9 14.4 237 27-273 13-289 (353)
10 COG0502 BioB Biotin synthase a 100.0 2.5E-33 5.4E-38 247.9 14.9 223 27-262 14-266 (335)
11 TIGR03551 F420_cofH 7,8-dideme 100.0 2.9E-32 6.4E-37 248.4 16.1 228 28-265 2-276 (343)
12 TIGR03700 mena_SCO4494 putativ 100.0 4.8E-32 1E-36 247.5 16.5 232 27-269 11-286 (351)
13 PRK08445 hypothetical protein; 100.0 2.1E-32 4.5E-37 248.7 13.8 238 27-272 4-285 (348)
14 PRK05926 hypothetical protein; 100.0 4.5E-32 9.7E-37 247.6 15.7 238 26-274 27-312 (370)
15 PRK15108 biotin synthase; Prov 100.0 2.5E-31 5.4E-36 241.5 19.3 225 27-264 7-261 (345)
16 PRK05927 hypothetical protein; 100.0 3.6E-32 7.8E-37 246.7 12.4 201 27-236 7-230 (350)
17 PLN02389 biotin synthase 100.0 9.7E-31 2.1E-35 239.3 17.9 227 27-265 47-304 (379)
18 PRK08508 biotin synthase; Prov 100.0 4.5E-30 9.8E-35 227.3 21.6 185 68-260 14-220 (279)
19 PRK07094 biotin synthase; Prov 100.0 4.7E-30 1E-34 232.5 21.7 207 29-247 3-221 (323)
20 PRK09240 thiH thiamine biosynt 100.0 2.4E-30 5.2E-35 237.6 18.9 241 27-279 36-319 (371)
21 PRK07360 FO synthase subunit 2 100.0 6.1E-31 1.3E-35 241.6 14.3 227 26-261 19-294 (371)
22 PRK06256 biotin synthase; Vali 100.0 1E-29 2.3E-34 231.4 20.9 222 27-260 20-271 (336)
23 PRK09234 fbiC FO synthase; Rev 100.0 4.7E-30 1E-34 254.1 18.3 238 27-274 487-772 (843)
24 TIGR03699 mena_SCO4550 menaqui 100.0 3.2E-30 6.9E-35 235.1 14.6 228 28-266 4-274 (340)
25 PRK14340 (dimethylallyl)adenos 100.0 1.6E-28 3.6E-33 230.3 26.3 238 10-252 94-346 (445)
26 TIGR02351 thiH thiazole biosyn 100.0 1.9E-29 4.1E-34 231.4 18.3 241 27-279 35-318 (366)
27 PRK14332 (dimethylallyl)adenos 100.0 4.3E-28 9.3E-33 227.6 26.8 233 13-252 102-349 (449)
28 PRK14327 (dimethylallyl)adenos 100.0 4.6E-28 1E-32 229.3 25.0 236 10-251 156-409 (509)
29 PRK14329 (dimethylallyl)adenos 100.0 2.2E-27 4.7E-32 224.1 26.9 238 10-252 111-371 (467)
30 PRK14339 (dimethylallyl)adenos 100.0 1.4E-27 3.1E-32 222.7 24.7 238 9-251 75-327 (420)
31 PRK09613 thiH thiamine biosynt 100.0 4.1E-28 8.8E-33 226.5 20.2 244 27-280 46-339 (469)
32 TIGR00423 radical SAM domain p 100.0 2.8E-28 6E-33 219.3 16.2 194 64-266 8-241 (309)
33 PRK14336 (dimethylallyl)adenos 100.0 7.3E-27 1.6E-31 217.8 26.2 225 9-252 88-322 (418)
34 PRK14335 (dimethylallyl)adenos 100.0 1.2E-26 2.6E-31 218.6 26.9 238 10-252 87-356 (455)
35 PRK14862 rimO ribosomal protei 100.0 9E-27 1.9E-31 218.6 25.4 235 10-252 89-344 (440)
36 COG1060 ThiH Thiamine biosynth 100.0 9.2E-29 2E-33 224.5 11.0 202 27-235 21-243 (370)
37 TIGR01579 MiaB-like-C MiaB-lik 100.0 2.4E-26 5.1E-31 214.8 26.9 232 15-251 85-335 (414)
38 PRK14331 (dimethylallyl)adenos 100.0 2E-26 4.4E-31 216.4 25.6 236 10-251 88-342 (437)
39 PRK14326 (dimethylallyl)adenos 100.0 1.6E-26 3.4E-31 219.7 25.0 238 9-251 100-354 (502)
40 PRK14337 (dimethylallyl)adenos 100.0 1.6E-26 3.6E-31 217.3 24.9 239 9-252 89-347 (446)
41 TIGR01574 miaB-methiolase tRNA 100.0 2.8E-26 6.2E-31 215.4 25.9 237 10-251 88-344 (438)
42 PRK14338 (dimethylallyl)adenos 100.0 4.5E-26 9.7E-31 214.9 27.3 230 12-251 111-352 (459)
43 TIGR01125 MiaB-like tRNA modif 100.0 5.6E-26 1.2E-30 213.1 26.7 236 11-251 83-332 (430)
44 PRK14330 (dimethylallyl)adenos 99.9 6.3E-26 1.4E-30 212.9 25.3 231 17-252 92-338 (434)
45 PRK14328 (dimethylallyl)adenos 99.9 8.2E-26 1.8E-30 212.4 25.3 236 10-251 91-344 (439)
46 PRK14333 (dimethylallyl)adenos 99.9 2.5E-26 5.5E-31 216.3 21.6 237 10-251 94-352 (448)
47 PRK14334 (dimethylallyl)adenos 99.9 2E-25 4.4E-30 209.7 25.8 230 16-251 93-334 (440)
48 PRK14325 (dimethylallyl)adenos 99.9 3.5E-25 7.5E-30 208.6 26.5 235 11-251 92-346 (444)
49 TIGR00089 RNA modification enz 99.9 4.1E-25 9E-30 207.4 25.5 235 12-251 87-336 (429)
50 TIGR00433 bioB biotin syntheta 99.9 1.8E-25 3.9E-30 200.2 22.0 196 40-247 5-213 (296)
51 TIGR03550 F420_cofG 7,8-dideme 99.9 5.2E-26 1.1E-30 205.5 15.2 187 63-258 6-236 (322)
52 TIGR01578 MiaB-like-B MiaB-lik 99.9 1.8E-24 3.8E-29 202.2 23.7 191 60-251 132-330 (420)
53 PRK09234 fbiC FO synthase; Rev 99.9 6.2E-26 1.3E-30 224.9 14.6 223 27-259 27-306 (843)
54 PRK05904 coproporphyrinogen II 99.9 2.3E-24 5.1E-29 196.6 22.4 217 62-288 8-244 (353)
55 PRK05660 HemN family oxidoredu 99.9 6.6E-24 1.4E-28 195.8 22.4 218 62-288 8-248 (378)
56 PRK08446 coproporphyrinogen II 99.9 4.8E-24 1E-28 194.9 20.8 210 69-288 8-235 (350)
57 PRK08207 coproporphyrinogen II 99.9 1E-23 2.3E-28 199.1 22.8 217 61-286 164-422 (488)
58 PRK07379 coproporphyrinogen II 99.9 7.9E-24 1.7E-28 196.5 21.0 218 62-288 12-260 (400)
59 TIGR00539 hemN_rel putative ox 99.9 7.6E-24 1.6E-28 194.5 19.6 212 69-288 8-241 (360)
60 PRK09058 coproporphyrinogen II 99.9 2.1E-23 4.5E-28 196.4 22.5 216 61-286 62-307 (449)
61 PRK06245 cofG FO synthase subu 99.9 1.2E-23 2.6E-28 191.5 20.1 179 64-248 15-214 (336)
62 PRK05628 coproporphyrinogen II 99.9 2.4E-23 5.1E-28 192.3 22.1 216 63-288 5-253 (375)
63 PRK06267 hypothetical protein; 99.9 1.4E-23 3.1E-28 191.4 20.1 204 40-260 5-237 (350)
64 PRK08599 coproporphyrinogen II 99.9 1.9E-23 4.1E-28 193.1 20.7 216 63-287 4-244 (377)
65 PRK05799 coproporphyrinogen II 99.9 2.1E-23 4.5E-28 192.7 20.5 217 62-288 5-244 (374)
66 PRK06582 coproporphyrinogen II 99.9 5E-23 1.1E-27 190.3 22.9 219 61-288 12-255 (390)
67 PRK06294 coproporphyrinogen II 99.9 5.9E-23 1.3E-27 188.9 23.0 217 62-288 8-248 (370)
68 PRK08208 coproporphyrinogen II 99.9 8.2E-23 1.8E-27 191.5 22.9 217 60-286 39-278 (430)
69 PRK09057 coproporphyrinogen II 99.9 6.8E-23 1.5E-27 189.3 21.7 218 62-288 6-248 (380)
70 TIGR00538 hemN oxygen-independ 99.9 7.7E-23 1.7E-27 193.2 22.2 217 62-287 51-294 (455)
71 PRK09249 coproporphyrinogen II 99.9 1.6E-22 3.4E-27 190.9 21.5 218 61-287 50-294 (453)
72 KOG2900|consensus 99.9 3.2E-24 7E-29 179.3 8.4 228 27-265 48-307 (380)
73 PRK13347 coproporphyrinogen II 99.9 2.5E-22 5.4E-27 189.5 22.4 218 61-287 51-295 (453)
74 PRK08898 coproporphyrinogen II 99.9 3.7E-22 8.1E-27 185.1 22.5 216 62-287 21-261 (394)
75 KOG2492|consensus 99.9 6.8E-23 1.5E-27 181.4 16.4 239 11-255 164-444 (552)
76 TIGR02026 BchE magnesium-proto 99.9 4.5E-22 9.8E-27 189.7 22.1 177 64-248 196-380 (497)
77 TIGR03471 HpnJ hopanoid biosyn 99.9 7.5E-22 1.6E-26 187.5 21.9 172 65-247 200-379 (472)
78 smart00729 Elp3 Elongator prot 99.9 2.3E-21 5.1E-26 163.9 19.1 177 63-247 3-193 (216)
79 COG0635 HemN Coproporphyrinoge 99.9 1.8E-20 3.9E-25 174.1 20.6 222 61-292 35-285 (416)
80 PRK13361 molybdenum cofactor b 99.9 5.9E-20 1.3E-24 166.7 20.7 182 54-247 6-195 (329)
81 PRK08629 coproporphyrinogen II 99.9 2E-19 4.2E-24 168.3 23.1 213 62-286 54-285 (433)
82 TIGR01212 radical SAM protein, 99.8 1.5E-19 3.3E-24 161.9 19.8 190 53-248 9-220 (302)
83 PRK01254 hypothetical protein; 99.8 1.5E-19 3.3E-24 171.6 20.3 183 63-247 374-599 (707)
84 PRK00164 moaA molybdenum cofac 99.8 3.2E-19 7E-24 162.2 20.4 174 54-236 9-190 (331)
85 TIGR02666 moaA molybdenum cofa 99.8 4.7E-19 1E-23 161.3 20.8 180 56-247 4-194 (334)
86 PF04055 Radical_SAM: Radical 99.8 1.7E-19 3.7E-24 146.3 15.1 156 66-229 2-166 (166)
87 PLN02951 Molybderin biosynthes 99.8 2.2E-18 4.8E-23 158.4 23.5 178 56-244 52-238 (373)
88 TIGR02668 moaA_archaeal probab 99.8 1.5E-18 3.2E-23 155.9 20.0 176 56-243 4-186 (302)
89 TIGR01210 conserved hypothetic 99.8 3.6E-18 7.8E-23 153.5 21.1 181 63-249 17-216 (313)
90 PRK05301 pyrroloquinoline quin 99.8 1.3E-17 2.9E-22 154.2 24.7 174 59-245 14-193 (378)
91 PRK00955 hypothetical protein; 99.8 2.4E-18 5.2E-23 164.4 19.7 186 63-251 294-524 (620)
92 cd01335 Radical_SAM Radical SA 99.8 3.8E-18 8.2E-23 142.5 17.8 174 66-249 2-184 (204)
93 COG2896 MoaA Molybdenum cofact 99.8 6.8E-18 1.5E-22 149.3 18.6 171 56-236 5-183 (322)
94 TIGR02109 PQQ_syn_pqqE coenzym 99.8 2.3E-17 4.9E-22 151.7 20.9 168 61-240 7-180 (358)
95 TIGR03470 HpnH hopanoid biosyn 99.7 3.9E-16 8.4E-21 140.9 22.3 167 62-242 29-200 (318)
96 TIGR01211 ELP3 histone acetylt 99.7 4.2E-16 9.2E-21 147.8 22.0 166 69-241 76-296 (522)
97 PRK11145 pflA pyruvate formate 99.7 1.6E-15 3.4E-20 132.4 21.7 206 59-275 19-244 (246)
98 TIGR02493 PFLA pyruvate format 99.7 2.7E-15 5.9E-20 129.9 21.4 168 65-242 19-197 (235)
99 TIGR01290 nifB nitrogenase cof 99.7 4.5E-15 9.7E-20 139.1 24.0 172 64-243 27-226 (442)
100 COG1032 Fe-S oxidoreductase [E 99.7 4.3E-16 9.4E-21 148.3 16.0 182 62-247 199-397 (490)
101 KOG4355|consensus 99.7 2E-16 4.2E-21 139.8 11.6 186 65-251 191-385 (547)
102 COG1242 Predicted Fe-S oxidore 99.7 6.2E-15 1.3E-19 125.8 18.6 181 53-240 15-218 (312)
103 TIGR02495 NrdG2 anaerobic ribo 99.7 2.3E-14 5.1E-19 120.2 20.2 161 59-233 14-183 (191)
104 TIGR03822 AblA_like_2 lysine-2 99.6 5.8E-14 1.3E-18 126.8 22.2 186 64-269 91-291 (321)
105 PRK14456 ribosomal RNA large s 99.6 8.5E-14 1.8E-18 127.2 22.8 195 65-275 125-345 (368)
106 PRK13758 anaerobic sulfatase-m 99.6 2.9E-13 6.2E-18 125.0 22.4 173 67-247 11-199 (370)
107 COG1180 PflA Pyruvate-formate 99.6 2.1E-13 4.5E-18 119.4 19.5 207 61-284 35-253 (260)
108 PRK14469 ribosomal RNA large s 99.6 5.9E-13 1.3E-17 121.4 23.1 200 62-275 102-317 (343)
109 COG0535 Predicted Fe-S oxidore 99.6 4.9E-13 1.1E-17 121.9 22.1 190 61-261 19-214 (347)
110 COG1856 Uncharacterized homolo 99.6 2.8E-13 6E-18 112.0 18.2 199 63-270 13-216 (275)
111 PRK14463 ribosomal RNA large s 99.6 8.2E-13 1.8E-17 120.2 23.3 201 62-275 104-317 (349)
112 PRK14455 ribosomal RNA large s 99.6 7.7E-13 1.7E-17 120.8 23.0 195 67-275 115-329 (356)
113 PRK14459 ribosomal RNA large s 99.6 9.4E-13 2E-17 120.0 23.3 199 64-275 124-351 (373)
114 PRK14470 ribosomal RNA large s 99.6 1.4E-12 3E-17 117.9 23.1 198 62-274 98-313 (336)
115 PRK14468 ribosomal RNA large s 99.6 1.3E-12 2.8E-17 118.7 22.4 199 64-275 96-313 (343)
116 PRK14466 ribosomal RNA large s 99.5 2.7E-12 5.8E-17 115.8 23.7 195 67-274 109-316 (345)
117 PRK13745 anaerobic sulfatase-m 99.5 7.5E-13 1.6E-17 123.8 20.7 174 62-244 14-205 (412)
118 TIGR00048 radical SAM enzyme, 99.5 1.5E-12 3.3E-17 118.8 22.0 195 67-275 111-325 (355)
119 COG1243 ELP3 Histone acetyltra 99.5 8.2E-13 1.8E-17 120.0 19.1 171 69-243 75-290 (515)
120 PRK14460 ribosomal RNA large s 99.5 4E-12 8.7E-17 115.9 22.9 200 64-275 105-324 (354)
121 COG2100 Predicted Fe-S oxidore 99.5 5E-13 1.1E-17 116.2 15.9 159 68-235 114-286 (414)
122 PRK13762 tRNA-modifying enzyme 99.5 2.8E-12 6E-17 115.8 20.6 187 69-271 66-290 (322)
123 COG0731 Fe-S oxidoreductases [ 99.5 2.8E-12 6.1E-17 112.4 19.0 167 69-245 32-215 (296)
124 PRK14457 ribosomal RNA large s 99.5 1.1E-11 2.4E-16 112.5 22.9 197 64-275 104-322 (345)
125 PRK14467 ribosomal RNA large s 99.5 9E-12 1.9E-16 113.1 22.1 200 63-275 101-321 (348)
126 TIGR03821 AblA_like_1 lysine-2 99.5 3.2E-12 7E-17 115.3 19.0 186 65-269 100-297 (321)
127 TIGR00238 KamA family protein. 99.5 8.2E-12 1.8E-16 113.3 21.5 169 64-249 116-296 (331)
128 PRK14453 chloramphenicol/florf 99.4 6.2E-11 1.3E-15 107.7 22.8 203 62-274 101-321 (347)
129 TIGR03278 methan_mark_10 putat 99.4 6.5E-11 1.4E-15 109.4 22.5 164 69-242 30-205 (404)
130 COG0641 AslB Arylsulfatase reg 99.4 4.5E-11 9.7E-16 109.7 19.7 167 68-244 14-194 (378)
131 COG2108 Uncharacterized conser 99.4 9.4E-12 2E-16 108.6 14.0 159 64-241 31-200 (353)
132 PRK14465 ribosomal RNA large s 99.4 2.9E-10 6.2E-15 102.9 23.8 199 63-275 107-321 (342)
133 PRK14454 ribosomal RNA large s 99.4 2.6E-10 5.5E-15 103.7 22.8 198 63-275 103-318 (342)
134 PRK11194 ribosomal RNA large s 99.4 3.7E-10 8E-15 103.4 23.9 200 64-275 106-329 (372)
135 TIGR03820 lys_2_3_AblA lysine- 99.3 1.4E-10 3E-15 107.0 19.8 159 65-240 112-283 (417)
136 PRK14462 ribosomal RNA large s 99.3 2.6E-10 5.6E-15 103.7 21.2 198 64-275 113-330 (356)
137 TIGR02494 PFLE_PFLC glycyl-rad 99.3 4.9E-10 1.1E-14 100.4 20.6 144 87-242 105-256 (295)
138 PRK14464 ribosomal RNA large s 99.3 3.9E-10 8.6E-15 101.9 19.2 198 64-274 99-308 (344)
139 PRK10076 pyruvate formate lyas 99.2 1.5E-09 3.2E-14 92.3 19.4 177 86-275 17-209 (213)
140 COG4277 Predicted DNA-binding 99.2 9.7E-10 2.1E-14 94.9 15.8 176 66-247 59-259 (404)
141 COG1031 Uncharacterized Fe-S o 99.2 3E-09 6.4E-14 96.9 17.6 176 65-240 187-401 (560)
142 TIGR03365 Bsubt_queE 7-cyano-7 99.1 2.7E-09 5.8E-14 92.5 15.5 133 59-214 21-160 (238)
143 COG2516 Biotin synthase-relate 99.1 2.3E-09 5E-14 93.7 14.5 174 62-246 30-226 (339)
144 COG1244 Predicted Fe-S oxidore 99.1 9.6E-09 2.1E-13 90.0 18.0 176 61-241 47-244 (358)
145 COG1313 PflX Uncharacterized F 99.1 1.1E-08 2.4E-13 88.3 16.4 197 69-278 126-334 (335)
146 PRK14461 ribosomal RNA large s 99.0 1.2E-07 2.7E-12 86.0 22.3 197 67-274 113-343 (371)
147 PF13353 Fer4_12: 4Fe-4S singl 98.9 9.2E-10 2E-14 87.3 4.8 81 67-150 11-95 (139)
148 KOG2876|consensus 98.9 2.3E-09 5E-14 91.1 4.3 163 65-239 15-187 (323)
149 PF13394 Fer4_14: 4Fe-4S singl 98.8 5.6E-09 1.2E-13 80.6 5.6 83 67-151 4-92 (119)
150 COG1533 SplB DNA repair photol 98.8 4.5E-07 9.8E-12 80.8 18.2 169 68-240 36-219 (297)
151 COG5014 Predicted Fe-S oxidore 98.7 1.6E-07 3.5E-12 75.2 10.9 137 68-215 48-196 (228)
152 COG0820 Predicted Fe-S-cluster 98.7 3.6E-06 7.8E-11 75.6 19.2 195 68-274 108-321 (349)
153 PRK11121 nrdG anaerobic ribonu 98.6 2.3E-07 4.9E-12 75.0 9.5 77 68-146 23-105 (154)
154 cd03174 DRE_TIM_metallolyase D 98.6 2.6E-06 5.7E-11 74.9 17.0 147 86-240 14-166 (265)
155 TIGR02826 RNR_activ_nrdG3 anae 98.6 5.8E-07 1.3E-11 71.9 10.5 96 63-171 17-116 (147)
156 TIGR02491 NrdG anaerobic ribon 98.5 8.9E-07 1.9E-11 71.6 9.6 76 59-137 14-94 (154)
157 COG1509 KamA Lysine 2,3-aminom 98.4 1.1E-05 2.4E-10 72.3 15.6 160 64-240 114-287 (369)
158 COG1625 Fe-S oxidoreductase, r 98.4 1E-05 2.2E-10 73.7 14.2 190 69-269 35-242 (414)
159 COG1964 Predicted Fe-S oxidore 98.1 0.00028 6E-09 65.0 16.8 140 78-231 78-227 (475)
160 COG0602 NrdG Organic radical a 98.0 2.7E-05 6E-10 66.2 8.2 81 59-148 21-108 (212)
161 cd07948 DRE_TIM_HCS Saccharomy 97.8 0.0031 6.8E-08 55.5 17.6 141 86-239 17-160 (262)
162 cd07939 DRE_TIM_NifV Streptomy 97.8 0.0053 1.2E-07 53.9 18.7 142 86-240 15-159 (259)
163 TIGR03279 cyano_FeS_chp putati 97.7 0.002 4.3E-08 60.0 14.9 77 154-232 128-206 (433)
164 PRK05692 hydroxymethylglutaryl 97.6 0.0068 1.5E-07 54.1 17.9 145 86-240 21-175 (287)
165 PRK08195 4-hyroxy-2-oxovalerat 97.6 0.0073 1.6E-07 55.1 18.2 138 86-239 20-163 (337)
166 TIGR02090 LEU1_arch isopropylm 97.6 0.0072 1.6E-07 55.8 17.7 142 86-240 17-161 (363)
167 cd07943 DRE_TIM_HOA 4-hydroxy- 97.5 0.013 2.8E-07 51.6 18.0 136 86-239 17-160 (263)
168 cd07944 DRE_TIM_HOA_like 4-hyd 97.5 0.0092 2E-07 52.7 16.8 136 87-240 16-158 (266)
169 TIGR03217 4OH_2_O_val_ald 4-hy 97.5 0.018 4E-07 52.4 19.1 136 86-240 19-163 (333)
170 cd07940 DRE_TIM_IPMS 2-isoprop 97.5 0.017 3.7E-07 50.9 18.2 142 86-240 15-163 (268)
171 PRK11858 aksA trans-homoaconit 97.5 0.012 2.6E-07 54.7 17.7 142 86-240 21-165 (378)
172 PLN02746 hydroxymethylglutaryl 97.5 0.013 2.9E-07 53.4 17.6 145 86-240 63-217 (347)
173 TIGR02660 nifV_homocitr homoci 97.4 0.016 3.5E-07 53.5 17.6 141 86-239 18-161 (365)
174 PF00682 HMGL-like: HMGL-like 97.4 0.0039 8.5E-08 53.9 12.7 144 87-240 10-157 (237)
175 cd07938 DRE_TIM_HMGL 3-hydroxy 97.2 0.024 5.1E-07 50.3 16.1 145 86-240 15-169 (274)
176 PRK00915 2-isopropylmalate syn 97.1 0.03 6.6E-07 54.1 16.4 145 86-239 21-168 (513)
177 cd07941 DRE_TIM_LeuA3 Desulfob 96.9 0.16 3.5E-06 44.9 18.4 146 86-240 15-171 (273)
178 PRK09389 (R)-citramalate synth 96.9 0.084 1.8E-06 50.7 17.5 141 86-239 19-162 (488)
179 KOG2535|consensus 96.9 0.11 2.3E-06 46.8 16.5 147 90-240 152-325 (554)
180 cd07937 DRE_TIM_PC_TC_5S Pyruv 96.8 0.058 1.3E-06 47.8 14.5 140 87-240 17-169 (275)
181 TIGR00973 leuA_bact 2-isopropy 96.8 0.11 2.4E-06 50.0 17.1 145 86-239 18-165 (494)
182 cd07945 DRE_TIM_CMS Leptospira 96.7 0.14 3E-06 45.5 15.8 144 86-240 14-167 (280)
183 PRK14041 oxaloacetate decarbox 96.6 0.16 3.4E-06 48.4 16.8 139 87-239 21-172 (467)
184 TIGR01108 oadA oxaloacetate de 96.5 0.21 4.7E-06 48.9 17.0 139 87-239 17-168 (582)
185 PRK12331 oxaloacetate decarbox 96.3 0.28 6.2E-06 46.5 16.6 140 87-240 22-174 (448)
186 PRK14040 oxaloacetate decarbox 96.3 0.27 5.9E-06 48.3 16.8 139 87-239 23-174 (593)
187 COG0119 LeuA Isopropylmalate/h 96.2 0.28 6E-06 46.0 15.4 144 86-239 19-165 (409)
188 PRK09282 pyruvate carboxylase 96.1 0.39 8.5E-06 47.2 16.9 140 87-240 22-174 (592)
189 PRK12344 putative alpha-isopro 96.1 0.4 8.7E-06 46.5 16.6 145 86-239 22-177 (524)
190 PLN03228 methylthioalkylmalate 96.1 0.34 7.3E-06 46.6 15.7 141 87-239 102-258 (503)
191 PRK08091 ribulose-phosphate 3- 96.1 0.51 1.1E-05 40.6 15.3 130 88-245 22-151 (228)
192 PRK12330 oxaloacetate decarbox 95.9 0.56 1.2E-05 45.0 16.5 139 87-239 23-174 (499)
193 TIGR00977 LeuA_rel 2-isopropyl 95.9 0.9 1.9E-05 44.1 18.0 146 86-240 18-174 (526)
194 PF05853 DUF849: Prokaryotic p 95.8 0.21 4.6E-06 44.2 12.3 86 87-172 22-109 (272)
195 PRK12581 oxaloacetate decarbox 95.7 0.92 2E-05 43.2 16.5 139 87-239 31-182 (468)
196 PRK14042 pyruvate carboxylase 95.3 0.78 1.7E-05 45.1 15.2 83 87-170 22-115 (596)
197 PF04481 DUF561: Protein of un 94.5 2.6 5.6E-05 35.7 14.9 128 88-239 24-151 (242)
198 TIGR01182 eda Entner-Doudoroff 94.5 2.5 5.5E-05 35.7 14.5 114 87-241 16-129 (204)
199 PRK11613 folP dihydropteroate 94.5 2.8 6E-05 37.3 15.2 138 86-232 33-207 (282)
200 PRK14847 hypothetical protein; 94.3 2.9 6.2E-05 38.1 15.2 138 87-235 50-203 (333)
201 PF07745 Glyco_hydro_53: Glyco 94.1 3.1 6.7E-05 37.9 15.0 142 98-244 31-208 (332)
202 PRK14057 epimerase; Provisiona 94.0 3.9 8.4E-05 35.8 15.2 127 88-245 29-165 (254)
203 PLN02321 2-isopropylmalate syn 94.0 2.9 6.2E-05 41.5 15.6 147 86-239 103-259 (632)
204 PF01081 Aldolase: KDPG and KH 93.9 2.1 4.6E-05 35.9 12.7 114 87-241 16-129 (196)
205 TIGR03849 arch_ComA phosphosul 93.6 3.7 8.1E-05 35.4 13.8 131 88-239 9-153 (237)
206 PRK06015 keto-hydroxyglutarate 93.6 2.4 5.1E-05 35.7 12.4 114 87-241 12-125 (201)
207 KOG2550|consensus 93.4 0.65 1.4E-05 42.9 9.2 124 95-239 254-382 (503)
208 cd00739 DHPS DHPS subgroup of 93.3 1.8 3.9E-05 37.9 11.9 138 86-231 19-193 (257)
209 PRK07807 inosine 5-monophospha 93.3 1.9 4.1E-05 41.4 12.8 130 91-240 226-359 (479)
210 cd02810 DHOD_DHPD_FMN Dihydroo 93.2 2.2 4.8E-05 37.8 12.5 112 122-240 81-196 (289)
211 PLN02540 methylenetetrahydrofo 93.2 4.4 9.6E-05 39.6 15.1 60 86-145 68-134 (565)
212 COG0159 TrpA Tryptophan syntha 93.1 3.3 7.1E-05 36.4 12.9 123 154-279 34-179 (265)
213 cd00537 MTHFR Methylenetetrahy 93.1 5.1 0.00011 35.3 14.5 120 87-222 69-204 (274)
214 TIGR01496 DHPS dihydropteroate 93.0 5.8 0.00013 34.7 14.8 139 86-232 18-192 (257)
215 cd07947 DRE_TIM_Re_CS Clostrid 92.9 6.3 0.00014 35.0 15.9 135 88-239 18-169 (279)
216 TIGR00676 fadh2 5,10-methylene 92.9 6.2 0.00013 34.9 15.3 113 87-215 69-192 (272)
217 PRK05718 keto-hydroxyglutarate 92.8 5 0.00011 34.1 13.4 71 87-170 23-93 (212)
218 PRK05692 hydroxymethylglutaryl 92.8 6.9 0.00015 34.9 15.0 80 88-174 152-234 (287)
219 PF00478 IMPDH: IMP dehydrogen 92.7 1.7 3.7E-05 39.8 11.0 133 91-243 107-243 (352)
220 PRK07535 methyltetrahydrofolat 92.7 3.5 7.7E-05 36.2 12.7 133 87-230 21-181 (261)
221 TIGR01303 IMP_DH_rel_1 IMP deh 92.6 2 4.4E-05 41.1 11.9 133 91-243 224-360 (475)
222 PRK08005 epimerase; Validated 92.5 5.9 0.00013 33.6 16.4 124 89-240 11-135 (210)
223 COG0159 TrpA Tryptophan syntha 92.3 3.9 8.5E-05 35.9 12.3 143 88-233 28-204 (265)
224 TIGR00970 leuA_yeast 2-isoprop 92.2 11 0.00023 37.1 16.6 140 86-234 43-198 (564)
225 TIGR00677 fadh2_euk methylenet 92.2 8.1 0.00018 34.3 15.0 117 88-220 71-203 (281)
226 PRK12581 oxaloacetate decarbox 92.2 8.5 0.00018 36.8 15.3 79 88-174 160-241 (468)
227 PRK14041 oxaloacetate decarbox 92.1 6.9 0.00015 37.4 14.7 80 87-174 149-231 (467)
228 PRK12330 oxaloacetate decarbox 92.0 7 0.00015 37.7 14.7 81 87-174 151-235 (499)
229 COG5016 Pyruvate/oxaloacetate 92.0 0.99 2.2E-05 41.7 8.5 140 87-240 24-176 (472)
230 PRK07114 keto-hydroxyglutarate 92.0 4.7 0.0001 34.5 12.3 117 87-240 23-139 (222)
231 PRK08745 ribulose-phosphate 3- 91.9 6.1 0.00013 33.9 13.0 114 89-225 14-129 (223)
232 cd00945 Aldolase_Class_I Class 91.9 6.1 0.00013 32.4 15.9 131 89-240 11-149 (201)
233 TIGR03128 RuMP_HxlA 3-hexulose 91.9 4.7 0.0001 33.7 12.3 121 88-240 9-133 (206)
234 PRK11572 copper homeostasis pr 91.9 8 0.00017 33.7 16.2 126 90-240 72-198 (248)
235 PRK09282 pyruvate carboxylase 91.8 10 0.00022 37.4 16.0 79 88-174 151-232 (592)
236 PTZ00170 D-ribulose-5-phosphat 91.6 6.6 0.00014 33.7 13.0 101 88-208 16-118 (228)
237 cd00377 ICL_PEPM Members of th 91.6 8.5 0.00018 33.4 15.3 141 98-240 23-180 (243)
238 TIGR01108 oadA oxaloacetate de 91.6 7.6 0.00016 38.3 14.8 79 88-174 146-227 (582)
239 PF00682 HMGL-like: HMGL-like 91.5 1.9 4.2E-05 37.0 9.7 80 88-174 134-216 (237)
240 cd07942 DRE_TIM_LeuA Mycobacte 91.5 9.8 0.00021 33.9 16.7 134 86-232 18-168 (284)
241 cd04731 HisF The cyclase subun 91.4 3.3 7.3E-05 35.7 11.1 131 90-240 26-169 (243)
242 cd03412 CbiK_N Anaerobic cobal 91.4 5.5 0.00012 30.8 11.5 94 123-230 16-124 (127)
243 TIGR00640 acid_CoA_mut_C methy 91.4 2.7 5.8E-05 32.9 9.5 73 87-170 39-111 (132)
244 PRK08883 ribulose-phosphate 3- 91.4 7.9 0.00017 33.1 13.1 80 89-174 10-91 (220)
245 PRK14024 phosphoribosyl isomer 91.4 6.2 0.00013 34.2 12.7 128 92-240 33-166 (241)
246 PF00834 Ribul_P_3_epim: Ribul 91.2 2.2 4.8E-05 35.9 9.5 128 89-245 10-138 (201)
247 cd00452 KDPG_aldolase KDPG and 91.2 7.6 0.00017 32.2 14.6 113 88-241 13-125 (190)
248 PF06180 CbiK: Cobalt chelatas 91.2 1.2 2.5E-05 39.2 7.9 46 125-170 19-77 (262)
249 cd07943 DRE_TIM_HOA 4-hydroxy- 91.2 8.2 0.00018 33.8 13.4 79 88-173 138-219 (263)
250 COG2185 Sbm Methylmalonyl-CoA 91.0 5 0.00011 31.8 10.6 74 87-171 49-122 (143)
251 PF02219 MTHFR: Methylenetetra 91.0 5.6 0.00012 35.4 12.4 112 88-215 82-207 (287)
252 PRK00748 1-(5-phosphoribosyl)- 91.0 6.3 0.00014 33.6 12.4 129 91-240 30-166 (233)
253 cd02071 MM_CoA_mut_B12_BD meth 90.9 1.8 3.9E-05 33.2 8.0 74 87-171 36-109 (122)
254 cd02810 DHOD_DHPD_FMN Dihydroo 90.8 11 0.00024 33.3 14.8 144 89-240 109-272 (289)
255 PRK10550 tRNA-dihydrouridine s 90.8 12 0.00027 33.7 14.7 139 88-240 72-224 (312)
256 PLN02495 oxidoreductase, actin 90.7 6.1 0.00013 36.8 12.6 116 122-242 96-216 (385)
257 cd00423 Pterin_binding Pterin 90.7 8.9 0.00019 33.5 13.2 137 86-230 19-192 (258)
258 cd07945 DRE_TIM_CMS Leptospira 90.7 3.2 7E-05 36.9 10.4 80 88-174 144-226 (280)
259 PRK15452 putative protease; Pr 90.6 13 0.00028 35.4 14.9 74 95-171 14-96 (443)
260 cd07938 DRE_TIM_HMGL 3-hydroxy 90.5 4.4 9.5E-05 35.9 11.1 80 88-174 146-228 (274)
261 TIGR00262 trpA tryptophan synt 90.5 5 0.00011 35.2 11.3 139 88-232 21-196 (256)
262 COG0685 MetF 5,10-methylenetet 90.5 3 6.5E-05 37.3 10.1 113 87-215 88-210 (291)
263 cd04724 Tryptophan_synthase_al 90.5 4.8 0.0001 34.9 11.1 82 88-170 11-110 (242)
264 TIGR00736 nifR3_rel_arch TIM-b 90.5 11 0.00023 32.6 15.9 131 87-240 76-220 (231)
265 cd07937 DRE_TIM_PC_TC_5S Pyruv 90.4 12 0.00026 33.1 14.5 23 88-110 146-168 (275)
266 cd03174 DRE_TIM_metallolyase D 90.4 8.6 0.00019 33.3 12.9 78 88-172 143-223 (265)
267 PRK09432 metF 5,10-methylenete 90.3 7.6 0.00016 34.8 12.5 112 87-215 93-211 (296)
268 cd07941 DRE_TIM_LeuA3 Desulfob 90.3 3.9 8.5E-05 36.1 10.6 14 123-136 150-163 (273)
269 cd07940 DRE_TIM_IPMS 2-isoprop 90.3 12 0.00026 32.9 13.7 47 88-138 140-186 (268)
270 PF01207 Dus: Dihydrouridine s 90.2 2.6 5.7E-05 38.0 9.6 88 154-242 69-160 (309)
271 COG1856 Uncharacterized homolo 90.1 11 0.00024 32.2 13.8 110 123-239 135-251 (275)
272 PRK12331 oxaloacetate decarbox 90.0 12 0.00026 35.7 14.1 79 88-174 151-232 (448)
273 PRK09140 2-dehydro-3-deoxy-6-p 89.9 7.7 0.00017 32.8 11.7 73 87-171 18-90 (206)
274 PRK06552 keto-hydroxyglutarate 89.9 7.9 0.00017 32.9 11.7 115 87-240 21-136 (213)
275 PRK14040 oxaloacetate decarbox 89.9 14 0.0003 36.6 14.9 79 88-174 152-233 (593)
276 COG0800 Eda 2-keto-3-deoxy-6-p 89.6 12 0.00025 31.7 12.2 113 87-240 21-133 (211)
277 cd00950 DHDPS Dihydrodipicolin 89.6 3.5 7.7E-05 36.5 9.9 77 154-239 24-101 (284)
278 PF01261 AP_endonuc_2: Xylose 89.5 4 8.8E-05 33.6 9.8 22 219-240 70-91 (213)
279 PRK05096 guanosine 5'-monophos 89.5 5.9 0.00013 36.0 11.0 128 94-240 110-242 (346)
280 PRK08575 5-methyltetrahydropte 89.4 16 0.00035 33.1 15.5 123 95-240 165-296 (326)
281 cd04732 HisA HisA. Phosphorib 89.4 4.5 9.8E-05 34.5 10.2 131 90-240 28-166 (234)
282 cd02801 DUS_like_FMN Dihydrour 89.4 12 0.00027 31.7 13.1 139 88-240 64-213 (231)
283 PF01136 Peptidase_U32: Peptid 89.3 3.5 7.5E-05 35.3 9.4 69 91-175 2-71 (233)
284 PRK13111 trpA tryptophan synth 89.2 15 0.00032 32.3 14.0 83 89-171 24-124 (258)
285 TIGR00284 dihydropteroate synt 89.1 11 0.00023 36.5 13.1 126 91-231 165-305 (499)
286 TIGR02146 LysS_fung_arch homoc 89.1 17 0.00037 32.9 18.5 140 87-239 16-158 (344)
287 PF03932 CutC: CutC family; I 88.9 9.8 0.00021 32.1 11.4 126 90-240 71-199 (201)
288 PRK14042 pyruvate carboxylase 88.9 18 0.0004 35.7 14.9 80 87-174 150-232 (596)
289 cd01299 Met_dep_hydrolase_A Me 88.8 11 0.00024 34.0 12.8 88 88-182 117-211 (342)
290 PF00290 Trp_syntA: Tryptophan 88.7 10 0.00023 33.2 11.9 142 89-233 22-197 (259)
291 COG2875 CobM Precorrin-4 methy 88.6 8.5 0.00018 33.1 10.7 46 86-136 57-102 (254)
292 PRK03739 2-isopropylmalate syn 88.5 26 0.00057 34.4 16.3 137 86-231 47-196 (552)
293 PLN02746 hydroxymethylglutaryl 88.5 5.5 0.00012 36.5 10.4 16 122-137 195-210 (347)
294 PRK13585 1-(5-phosphoribosyl)- 88.3 9.2 0.0002 32.8 11.4 130 91-240 32-169 (241)
295 PRK03170 dihydrodipicolinate s 88.3 4.5 9.7E-05 36.0 9.6 77 154-239 25-102 (292)
296 PRK08195 4-hyroxy-2-oxovalerat 88.2 7.4 0.00016 35.6 11.1 80 88-174 141-224 (337)
297 PRK12999 pyruvate carboxylase; 88.1 27 0.00058 37.5 16.5 139 87-239 551-710 (1146)
298 PTZ00314 inosine-5'-monophosph 88.1 10 0.00022 36.7 12.4 129 92-240 241-373 (495)
299 PRK00366 ispG 4-hydroxy-3-meth 87.9 15 0.00032 33.7 12.4 127 86-240 37-180 (360)
300 cd00408 DHDPS-like Dihydrodipi 87.8 5.4 0.00012 35.2 9.8 77 154-239 21-98 (281)
301 COG0042 tRNA-dihydrouridine sy 87.6 16 0.00034 33.2 12.8 137 88-240 76-228 (323)
302 PRK06843 inosine 5-monophospha 87.6 25 0.00054 33.0 14.9 131 91-240 152-285 (404)
303 PRK07565 dihydroorotate dehydr 87.5 9.6 0.00021 34.7 11.4 111 122-240 85-197 (334)
304 COG0826 Collagenase and relate 87.5 4.6 0.0001 37.1 9.2 81 155-240 17-99 (347)
305 TIGR03572 WbuZ glycosyl amidat 87.3 12 0.00027 31.9 11.5 132 91-241 30-174 (232)
306 TIGR03249 KdgD 5-dehydro-4-deo 87.2 9.2 0.0002 34.1 11.0 77 154-239 29-105 (296)
307 TIGR03217 4OH_2_O_val_ald 4-hy 87.1 10 0.00022 34.6 11.3 80 88-174 140-223 (333)
308 PRK09722 allulose-6-phosphate 87.0 19 0.00041 31.0 17.0 124 89-240 13-137 (229)
309 TIGR00735 hisF imidazoleglycer 87.0 14 0.0003 32.2 11.7 128 91-240 30-175 (254)
310 PRK11572 copper homeostasis pr 87.0 19 0.00042 31.3 12.3 67 96-172 13-94 (248)
311 cd07944 DRE_TIM_HOA_like 4-hyd 86.9 21 0.00045 31.4 13.5 80 88-174 135-218 (266)
312 cd07939 DRE_TIM_NifV Streptomy 86.9 8 0.00017 33.8 10.2 23 88-110 136-158 (259)
313 COG3589 Uncharacterized conser 86.8 17 0.00037 33.0 12.1 187 90-281 15-224 (360)
314 PF00809 Pterin_bind: Pterin b 86.8 3 6.5E-05 35.3 7.2 78 87-169 15-97 (210)
315 TIGR00007 phosphoribosylformim 86.7 14 0.0003 31.5 11.4 131 91-240 28-165 (230)
316 COG0107 HisF Imidazoleglycerol 86.4 17 0.00036 31.3 11.2 142 18-167 75-225 (256)
317 PRK08318 dihydropyrimidine deh 86.3 25 0.00055 33.1 13.9 141 89-240 111-282 (420)
318 PF10566 Glyco_hydro_97: Glyco 86.3 11 0.00023 33.4 10.5 108 87-207 28-153 (273)
319 KOG2900|consensus 86.3 5.5 0.00012 34.6 8.3 94 157-256 126-268 (380)
320 PLN02433 uroporphyrinogen deca 86.2 15 0.00032 33.6 12.0 72 96-171 184-260 (345)
321 cd00003 PNPsynthase Pyridoxine 86.1 2.9 6.2E-05 35.9 6.6 103 122-240 108-211 (234)
322 PRK13111 trpA tryptophan synth 86.1 23 0.00049 31.1 13.4 116 97-240 110-228 (258)
323 cd00954 NAL N-Acetylneuraminic 86.1 7.7 0.00017 34.5 9.8 48 187-237 52-100 (288)
324 TIGR00559 pdxJ pyridoxine 5'-p 86.0 2.9 6.3E-05 35.9 6.6 102 122-240 108-212 (237)
325 PRK03620 5-dehydro-4-deoxygluc 86.0 7.3 0.00016 35.0 9.7 77 154-239 31-107 (303)
326 TIGR00612 ispG_gcpE 1-hydroxy- 85.8 18 0.0004 32.8 11.8 124 87-239 30-170 (346)
327 cd02801 DUS_like_FMN Dihydrour 85.5 11 0.00024 32.0 10.2 85 154-240 70-158 (231)
328 cd02931 ER_like_FMN Enoate red 85.5 29 0.00062 32.3 13.6 138 85-227 137-325 (382)
329 TIGR00674 dapA dihydrodipicoli 85.5 8.5 0.00018 34.1 9.8 77 154-239 22-99 (285)
330 PF01729 QRPTase_C: Quinolinat 85.3 5.2 0.00011 32.7 7.6 65 95-171 91-155 (169)
331 PRK15452 putative protease; Pr 85.3 6.4 0.00014 37.4 9.2 81 154-240 13-96 (443)
332 PF05913 DUF871: Bacterial pro 85.1 5.2 0.00011 36.9 8.3 143 89-236 12-172 (357)
333 PRK05265 pyridoxine 5'-phospha 84.9 4 8.8E-05 35.1 7.0 100 122-240 111-213 (239)
334 PF06180 CbiK: Cobalt chelatas 84.8 5.3 0.00011 35.2 7.9 172 89-274 56-235 (262)
335 TIGR00742 yjbN tRNA dihydrouri 84.5 31 0.00067 31.2 15.5 141 88-240 64-223 (318)
336 COG3623 SgaU Putative L-xylulo 84.3 6.4 0.00014 33.8 7.8 83 154-240 21-116 (287)
337 PF00701 DHDPS: Dihydrodipicol 84.0 8.3 0.00018 34.2 9.1 77 154-239 25-102 (289)
338 cd00952 CHBPH_aldolase Trans-o 83.9 11 0.00024 33.9 9.9 48 187-237 59-107 (309)
339 TIGR00737 nifR3_yhdG putative 83.8 11 0.00024 34.0 9.9 86 154-240 78-167 (319)
340 PF04476 DUF556: Protein of un 83.6 28 0.00061 30.0 11.6 136 88-239 64-207 (235)
341 TIGR01769 GGGP geranylgeranylg 83.6 9.9 0.00021 32.1 8.8 75 87-171 130-205 (205)
342 PRK08444 hypothetical protein; 83.5 10 0.00022 34.9 9.6 108 154-275 86-205 (353)
343 cd02940 DHPD_FMN Dihydropyrimi 83.5 33 0.00071 30.7 14.3 141 89-240 111-281 (299)
344 TIGR00683 nanA N-acetylneurami 83.5 12 0.00025 33.4 9.8 26 211-236 73-99 (290)
345 PRK13210 putative L-xylulose 5 83.5 13 0.00029 32.5 10.2 18 154-171 19-36 (284)
346 COG3142 CutC Uncharacterized p 83.1 29 0.00062 29.8 12.9 127 90-239 72-199 (241)
347 cd00951 KDGDH 5-dehydro-4-deox 83.1 12 0.00025 33.4 9.6 48 187-237 51-98 (289)
348 TIGR01305 GMP_reduct_1 guanosi 83.1 21 0.00047 32.5 11.1 128 94-240 109-241 (343)
349 cd00381 IMPDH IMPDH: The catal 82.8 28 0.00061 31.6 12.1 130 91-240 93-226 (325)
350 PF02679 ComA: (2R)-phospho-3- 82.8 6.7 0.00014 34.1 7.6 132 88-240 22-167 (244)
351 PRK13209 L-xylulose 5-phosphat 82.8 24 0.00053 30.9 11.6 11 191-201 101-111 (283)
352 cd04740 DHOD_1B_like Dihydroor 82.8 26 0.00056 31.1 11.8 80 154-240 105-186 (296)
353 PRK01033 imidazole glycerol ph 82.8 30 0.00066 30.2 12.0 131 91-240 30-172 (258)
354 TIGR03278 methan_mark_10 putat 82.8 4.6 9.9E-05 37.9 7.1 17 68-84 6-22 (404)
355 cd04740 DHOD_1B_like Dihydroor 82.8 34 0.00074 30.4 16.6 139 89-240 100-260 (296)
356 KOG4175|consensus 82.7 28 0.0006 29.3 11.4 52 185-239 76-129 (268)
357 PRK10550 tRNA-dihydrouridine s 82.7 15 0.00033 33.2 10.2 87 154-241 78-169 (312)
358 PRK10415 tRNA-dihydrouridine s 82.6 13 0.00029 33.6 9.9 86 155-241 81-170 (321)
359 cd02072 Glm_B12_BD B12 binding 82.5 11 0.00024 29.3 8.0 71 154-237 40-112 (128)
360 cd02940 DHPD_FMN Dihydropyrimi 82.3 36 0.00078 30.4 12.5 81 155-240 117-200 (299)
361 TIGR00126 deoC deoxyribose-pho 82.3 30 0.00065 29.4 14.9 130 87-240 14-152 (211)
362 PF03740 PdxJ: Pyridoxal phosp 82.2 3.9 8.5E-05 35.3 5.8 132 89-240 72-214 (239)
363 TIGR02090 LEU1_arch isopropylm 82.2 42 0.0009 31.0 13.8 79 88-174 138-219 (363)
364 TIGR01037 pyrD_sub1_fam dihydr 82.2 36 0.00079 30.3 13.8 80 154-240 106-189 (300)
365 PRK05458 guanosine 5'-monophos 82.1 40 0.00086 30.7 12.9 130 92-240 97-230 (326)
366 PLN02417 dihydrodipicolinate s 82.1 16 0.00035 32.3 10.1 48 187-237 52-100 (280)
367 cd04724 Tryptophan_synthase_al 82.1 29 0.00063 30.0 11.5 83 154-239 17-110 (242)
368 cd00956 Transaldolase_FSA Tran 82.0 24 0.00052 29.9 10.7 84 88-183 110-193 (211)
369 PF00977 His_biosynth: Histidi 82.0 17 0.00037 31.1 9.9 133 89-240 27-167 (229)
370 cd02803 OYE_like_FMN_family Ol 81.9 14 0.00031 33.2 9.9 87 154-240 144-248 (327)
371 PRK11858 aksA trans-homoaconit 81.9 44 0.00095 31.0 13.8 79 88-174 142-223 (378)
372 TIGR00542 hxl6Piso_put hexulos 81.9 21 0.00047 31.2 10.8 12 190-201 95-106 (279)
373 cd04723 HisA_HisF Phosphoribos 81.9 20 0.00044 30.7 10.4 77 90-174 34-110 (233)
374 PRK11815 tRNA-dihydrouridine s 81.8 15 0.00033 33.5 10.0 86 154-240 80-171 (333)
375 PLN02617 imidazole glycerol ph 81.6 42 0.00091 32.8 13.3 148 87-240 263-458 (538)
376 TIGR02313 HpaI-NOT-DapA 2,4-di 81.5 15 0.00032 32.9 9.6 81 153-245 23-104 (294)
377 PRK12999 pyruvate carboxylase; 81.5 58 0.0012 35.0 15.3 79 88-174 688-769 (1146)
378 PF03808 Glyco_tran_WecB: Glyc 81.4 24 0.00051 28.8 10.2 77 88-173 31-110 (172)
379 TIGR01235 pyruv_carbox pyruvat 81.2 40 0.00086 36.2 14.0 138 88-239 550-708 (1143)
380 PRK13753 dihydropteroate synth 81.2 39 0.00085 30.0 14.1 138 86-232 20-197 (279)
381 PRK04147 N-acetylneuraminate l 81.1 17 0.00037 32.4 9.9 48 187-237 55-103 (293)
382 PRK11815 tRNA-dihydrouridine s 80.9 44 0.00096 30.4 13.7 139 88-240 74-233 (333)
383 PRK03170 dihydrodipicolinate s 80.9 17 0.00036 32.3 9.8 84 86-170 17-102 (292)
384 cd00953 KDG_aldolase KDG (2-ke 80.9 16 0.00035 32.3 9.6 17 187-205 76-92 (279)
385 TIGR01235 pyruv_carbox pyruvat 80.5 54 0.0012 35.2 14.6 80 87-174 685-767 (1143)
386 cd04735 OYE_like_4_FMN Old yel 80.5 47 0.001 30.5 13.2 136 85-227 131-304 (353)
387 cd00408 DHDPS-like Dihydrodipi 80.2 21 0.00046 31.4 10.2 85 85-170 12-98 (281)
388 cd06556 ICL_KPHMT Members of t 80.1 21 0.00047 30.9 9.9 83 156-239 24-108 (240)
389 COG0329 DapA Dihydrodipicolina 80.1 18 0.00039 32.4 9.7 77 154-239 28-105 (299)
390 PLN02428 lipoic acid synthase 79.9 23 0.00051 32.5 10.4 49 123-171 230-282 (349)
391 TIGR01163 rpe ribulose-phospha 79.5 34 0.00075 28.3 12.6 78 88-172 8-87 (210)
392 COG0107 HisF Imidazoleglycerol 79.5 18 0.00038 31.2 8.7 143 87-240 26-175 (256)
393 CHL00200 trpA tryptophan synth 79.4 43 0.00094 29.4 14.1 139 89-232 27-200 (263)
394 COG0320 LipA Lipoate synthase 79.0 12 0.00027 33.0 7.8 81 122-205 195-281 (306)
395 cd07948 DRE_TIM_HCS Saccharomy 79.0 27 0.00057 30.7 10.2 52 88-144 105-160 (262)
396 TIGR02320 PEP_mutase phosphoen 78.9 9.5 0.00021 34.0 7.5 75 89-172 167-241 (285)
397 PRK08207 coproporphyrinogen II 78.9 57 0.0012 31.5 13.2 100 86-201 230-348 (488)
398 TIGR01302 IMP_dehydrog inosine 78.8 23 0.0005 33.8 10.5 132 91-242 223-358 (450)
399 cd02930 DCR_FMN 2,4-dienoyl-Co 78.8 53 0.0012 30.1 15.3 147 85-240 124-306 (353)
400 KOG0564|consensus 78.7 23 0.0005 33.8 10.0 124 88-227 89-230 (590)
401 PRK07428 nicotinate-nucleotide 78.6 20 0.00043 32.0 9.4 66 95-172 207-272 (288)
402 PRK07896 nicotinate-nucleotide 78.6 21 0.00045 31.9 9.4 65 96-172 211-275 (289)
403 PRK07259 dihydroorotate dehydr 78.5 38 0.00082 30.2 11.4 81 154-240 107-189 (301)
404 cd02930 DCR_FMN 2,4-dienoyl-Co 78.5 24 0.00052 32.4 10.3 84 155-240 141-244 (353)
405 TIGR00620 sporelyase spore pho 78.4 38 0.00082 28.5 10.4 103 125-234 11-117 (199)
406 COG0821 gcpE 1-hydroxy-2-methy 78.2 54 0.0012 29.9 12.5 42 86-136 31-72 (361)
407 COG0269 SgbH 3-hexulose-6-phos 78.1 42 0.00091 28.6 13.0 118 96-240 72-192 (217)
408 PF01645 Glu_synthase: Conserv 78.1 58 0.0013 30.2 13.0 139 86-240 152-303 (368)
409 COG2513 PrpB PEP phosphonomuta 78.1 50 0.0011 29.4 14.0 140 98-239 32-185 (289)
410 PRK00043 thiE thiamine-phospha 78.1 25 0.00054 29.3 9.6 114 91-244 21-135 (212)
411 PRK07455 keto-hydroxyglutarate 78.0 38 0.00083 28.0 13.7 112 88-240 21-132 (187)
412 TIGR01501 MthylAspMutase methy 78.0 20 0.00044 28.1 8.2 71 154-237 42-114 (134)
413 TIGR00696 wecB_tagA_cpsF bacte 78.0 31 0.00066 28.4 9.7 73 90-172 34-108 (177)
414 TIGR02660 nifV_homocitr homoci 77.8 58 0.0013 30.0 13.5 81 88-174 139-220 (365)
415 cd00959 DeoC 2-deoxyribose-5-p 77.7 41 0.00088 28.2 15.1 133 87-240 13-151 (203)
416 smart00642 Aamy Alpha-amylase 77.7 7.6 0.00016 31.6 6.0 36 180-217 60-97 (166)
417 PRK05848 nicotinate-nucleotide 77.7 16 0.00034 32.4 8.4 66 95-172 193-258 (273)
418 TIGR00433 bioB biotin syntheta 77.6 50 0.0011 29.2 13.3 141 96-245 125-278 (296)
419 KOG3111|consensus 77.6 41 0.00089 28.2 11.9 79 90-174 16-97 (224)
420 PRK05581 ribulose-phosphate 3- 77.4 42 0.0009 28.1 13.9 79 88-172 13-92 (220)
421 TIGR00510 lipA lipoate synthas 77.2 18 0.0004 32.5 8.8 89 122-213 189-284 (302)
422 PRK07107 inosine 5-monophospha 76.9 18 0.0004 35.0 9.3 79 87-174 237-315 (502)
423 PLN02591 tryptophan synthase 76.8 50 0.0011 28.8 14.0 117 96-240 98-218 (250)
424 COG0036 Rpe Pentose-5-phosphat 76.8 47 0.001 28.4 15.8 98 89-207 14-112 (220)
425 TIGR00742 yjbN tRNA dihydrouri 76.6 25 0.00054 31.9 9.6 87 154-241 70-162 (318)
426 TIGR00737 nifR3_yhdG putative 76.6 58 0.0013 29.3 15.3 139 88-240 72-222 (319)
427 PRK13398 3-deoxy-7-phosphohept 76.5 36 0.00078 30.0 10.3 107 89-205 39-162 (266)
428 cd00953 KDG_aldolase KDG (2-ke 76.5 25 0.00055 31.0 9.5 82 86-170 15-97 (279)
429 PRK09997 hydroxypyruvate isome 76.4 30 0.00064 30.0 9.9 76 126-206 17-100 (258)
430 cd04733 OYE_like_2_FMN Old yel 76.2 27 0.00058 31.8 9.9 87 154-240 152-256 (338)
431 PRK02083 imidazole glycerol ph 76.1 14 0.00031 32.0 7.7 74 90-171 29-103 (253)
432 cd00951 KDGDH 5-dehydro-4-deox 76.0 30 0.00066 30.7 10.0 84 86-170 16-100 (289)
433 PRK13587 1-(5-phosphoribosyl)- 76.0 20 0.00042 30.9 8.5 125 92-240 32-168 (234)
434 cd02933 OYE_like_FMN Old yello 76.0 63 0.0014 29.5 12.9 137 85-239 139-313 (338)
435 TIGR01334 modD putative molybd 75.8 20 0.00043 31.8 8.5 66 94-171 198-263 (277)
436 KOG2872|consensus 75.8 11 0.00023 33.6 6.6 45 122-170 229-278 (359)
437 TIGR00977 LeuA_rel 2-isopropyl 75.7 31 0.00067 33.6 10.5 82 88-174 151-233 (526)
438 PRK14114 1-(5-phosphoribosyl)- 75.4 23 0.0005 30.7 8.7 127 90-240 29-164 (241)
439 TIGR03249 KdgD 5-dehydro-4-deo 75.3 32 0.00069 30.7 9.9 84 86-170 21-105 (296)
440 PRK08385 nicotinate-nucleotide 75.2 19 0.00042 31.9 8.3 67 96-172 194-260 (278)
441 PLN02274 inosine-5'-monophosph 75.1 34 0.00074 33.1 10.6 132 91-241 247-381 (505)
442 PRK02227 hypothetical protein; 74.8 56 0.0012 28.3 12.7 135 88-239 64-207 (238)
443 PLN03228 methylthioalkylmalate 74.7 86 0.0019 30.4 13.8 21 90-110 238-258 (503)
444 PRK09240 thiH thiamine biosynt 74.5 38 0.00083 31.3 10.5 69 155-240 111-180 (371)
445 PRK12928 lipoyl synthase; Prov 74.4 21 0.00046 31.9 8.4 24 217-240 255-278 (290)
446 TIGR02320 PEP_mutase phosphoen 74.0 65 0.0014 28.7 13.9 134 104-240 38-189 (285)
447 TIGR00674 dapA dihydrodipicoli 74.0 39 0.00084 29.9 10.1 83 85-170 13-99 (285)
448 PRK08318 dihydropyrimidine deh 74.0 64 0.0014 30.3 12.1 111 124-239 84-199 (420)
449 cd03416 CbiX_SirB_N Sirohydroc 73.9 28 0.00061 25.2 7.8 78 124-209 16-96 (101)
450 PRK03620 5-dehydro-4-deoxygluc 73.9 37 0.00081 30.4 10.0 84 86-170 23-107 (303)
451 COG0826 Collagenase and relate 73.9 22 0.00047 32.7 8.5 46 129-175 103-148 (347)
452 PRK07259 dihydroorotate dehydr 73.8 65 0.0014 28.7 13.9 141 88-240 101-263 (301)
453 PRK06096 molybdenum transport 73.7 34 0.00073 30.5 9.4 66 94-171 199-264 (284)
454 COG1902 NemA NADH:flavin oxido 73.4 78 0.0017 29.3 13.9 136 85-227 136-308 (363)
455 PLN02417 dihydrodipicolinate s 73.2 40 0.00087 29.8 10.0 83 85-170 16-102 (280)
456 TIGR03572 WbuZ glycosyl amidat 72.8 14 0.0003 31.6 6.8 74 90-171 152-227 (232)
457 COG0329 DapA Dihydrodipicolina 72.6 72 0.0016 28.6 11.6 84 86-170 20-105 (299)
458 PRK00915 2-isopropylmalate syn 72.5 37 0.00081 32.9 10.3 82 88-174 146-231 (513)
459 cd04739 DHOD_like Dihydroorota 72.5 56 0.0012 29.6 10.9 81 154-241 115-196 (325)
460 COG0269 SgbH 3-hexulose-6-phos 72.5 60 0.0013 27.6 12.9 124 87-240 12-137 (217)
461 PRK05927 hypothetical protein; 72.3 15 0.00033 33.7 7.2 20 186-205 106-125 (350)
462 TIGR01334 modD putative molybd 72.2 59 0.0013 28.9 10.6 90 125-240 174-263 (277)
463 PLN02321 2-isopropylmalate syn 72.0 37 0.00079 33.9 10.1 82 88-174 237-322 (632)
464 PRK04128 1-(5-phosphoribosyl)- 72.0 63 0.0014 27.7 10.7 123 92-239 31-161 (228)
465 TIGR00875 fsa_talC_mipB fructo 71.8 50 0.0011 28.1 9.7 73 103-183 121-193 (213)
466 COG1060 ThiH Thiamine biosynth 71.7 16 0.00034 33.9 7.1 113 154-275 96-215 (370)
467 PF01244 Peptidase_M19: Membra 71.7 79 0.0017 28.7 13.6 82 193-278 217-306 (320)
468 cd00950 DHDPS Dihydrodipicolin 71.7 41 0.00088 29.6 9.7 84 85-171 15-102 (284)
469 PLN03033 2-dehydro-3-deoxyphos 71.6 74 0.0016 28.3 10.9 108 89-205 28-158 (290)
470 PRK08508 biotin synthase; Prov 71.6 72 0.0016 28.2 13.1 142 96-247 104-257 (279)
471 TIGR01303 IMP_DH_rel_1 IMP deh 71.5 38 0.00082 32.6 9.9 70 152-240 225-294 (475)
472 TIGR01037 pyrD_sub1_fam dihydr 71.4 74 0.0016 28.3 16.6 172 88-276 100-292 (300)
473 PTZ00170 D-ribulose-5-phosphat 71.4 18 0.00038 31.1 7.0 21 215-235 95-116 (228)
474 PRK04147 N-acetylneuraminate l 71.1 42 0.0009 29.9 9.6 82 85-170 18-105 (293)
475 cd03312 CIMS_N_terminal_like C 71.0 87 0.0019 28.9 14.6 126 94-240 185-318 (360)
476 cd00564 TMP_TenI Thiamine mono 70.9 50 0.0011 26.8 9.5 68 91-171 12-79 (196)
477 PRK08645 bifunctional homocyst 70.8 1.1E+02 0.0024 30.4 13.4 48 88-135 393-446 (612)
478 PRK13397 3-deoxy-7-phosphohept 70.8 72 0.0016 27.9 13.9 105 89-201 27-148 (250)
479 cd04734 OYE_like_3_FMN Old yel 70.8 22 0.00047 32.6 7.9 81 155-240 145-249 (343)
480 PLN02475 5-methyltetrahydropte 70.7 1.3E+02 0.0029 30.8 16.0 126 94-240 189-326 (766)
481 PF02581 TMP-TENI: Thiamine mo 70.7 31 0.00067 28.2 8.1 115 90-244 11-126 (180)
482 cd04741 DHOD_1A_like Dihydroor 70.6 78 0.0017 28.2 12.6 112 123-240 73-193 (294)
483 PRK09856 fructoselysine 3-epim 70.3 46 0.001 28.9 9.7 78 126-206 15-105 (275)
484 COG0042 tRNA-dihydrouridine sy 70.3 45 0.00097 30.3 9.7 87 154-240 82-172 (323)
485 cd03329 MR_like_4 Mandelate ra 70.2 90 0.0019 28.7 12.4 77 88-169 142-221 (368)
486 cd07942 DRE_TIM_LeuA Mycobacte 70.1 37 0.00081 30.2 9.0 96 71-174 139-244 (284)
487 PRK02261 methylaspartate mutas 70.0 51 0.0011 25.8 10.1 76 87-171 40-119 (137)
488 cd02803 OYE_like_FMN_family Ol 70.0 26 0.00057 31.5 8.3 79 88-171 225-311 (327)
489 PRK12290 thiE thiamine-phospha 69.9 94 0.002 29.5 11.8 110 95-244 221-331 (437)
490 TIGR03821 AblA_like_1 lysine-2 69.9 64 0.0014 29.2 10.6 71 153-232 222-299 (321)
491 PRK13307 bifunctional formalde 69.8 98 0.0021 29.0 13.8 90 128-240 215-306 (391)
492 cd02932 OYE_YqiM_FMN Old yello 69.8 38 0.00083 30.8 9.3 87 154-240 157-261 (336)
493 PF00490 ALAD: Delta-aminolevu 69.6 14 0.00031 33.2 6.1 57 87-143 53-116 (324)
494 PRK01362 putative translaldola 69.5 70 0.0015 27.2 10.1 84 88-183 110-193 (214)
495 TIGR00973 leuA_bact 2-isopropy 69.4 34 0.00074 33.1 9.2 82 88-174 143-228 (494)
496 PLN02495 oxidoreductase, actin 69.3 62 0.0013 30.2 10.5 56 185-245 94-151 (385)
497 PRK02261 methylaspartate mutas 69.3 32 0.00068 27.0 7.5 71 154-237 44-116 (137)
498 PF04551 GcpE: GcpE protein; 69.3 57 0.0012 30.0 9.9 139 87-240 27-180 (359)
499 TIGR00695 uxuA mannonate dehyd 69.2 46 0.001 31.1 9.6 23 189-213 83-106 (394)
500 cd00952 CHBPH_aldolase Trans-o 68.9 41 0.00088 30.3 9.1 84 86-170 24-109 (309)
No 1
>PRK12928 lipoyl synthase; Provisional
Probab=100.00 E-value=4.5e-54 Score=380.35 Aligned_cols=283 Identities=49% Similarity=0.873 Sum_probs=264.5
Q ss_pred ccccccCCCCceeEeccCChhcHHHHHHHHHhcCchhhhhhcCCCCccccccCceeEeeeeCcccCCCCcCcccCCCCCC
Q psy2895 7 KNIEILKKPNWIRVKLISNIDNFNKTKNILRANNLVTVCEEASCPNIGECFGRGVATFMIMGSICTRRCKFCNISHGRPD 86 (293)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~t~~C~~~C~fC~~~~~~~~ 86 (293)
+..++.++|+|+++.+++| +.+.++.++++..++.+++..|+||+++++|++++++|+++|+||+.+|+||+++.+++.
T Consensus 7 ~~~~~~~~p~w~~~~~~~~-~~~~~~~~l~~~~~l~tv~~~A~~~~~~~~~~~~~~tfv~is~gC~~~C~FCa~~~g~~~ 85 (290)
T PRK12928 7 ARIPVERLPEWLRAPIGKA-SELETVQRLVKQRRLHTICEEARCPNRGECYAQGTATFLIMGSICTRRCAFCQVDKGRPM 85 (290)
T ss_pred ccCCCCCCCcceeecCCCC-hhHHHHHHHHHcCCHHHHHHHhCCCcccccCCCCEEEEEEecccccCcCCCCCccCCCCC
Confidence 3467889999999999987 889999999999999999999999999999999999999999999999999999998766
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCC
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPD 166 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~ 166 (293)
.++++++.+.++.+.+.|+++|+|+||+.+|+++.+.+++.++++.|++..|+++|++++|++.....+.+..|+++|.+
T Consensus 86 ~~~~eei~~~a~~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~~~I~~ltp~~~~~~~e~L~~l~~Ag~~ 165 (290)
T PRK12928 86 PLDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGTGIEVLTPDFWGGQRERLATVLAAKPD 165 (290)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCCCEEEEeccccccCCHHHHHHHHHcCch
Confidence 79999999999999999999999999987777666678999999999998888899998887654227889999999999
Q ss_pred eeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEeecCCCCC
Q psy2895 167 VLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIGQYLMPS 246 (293)
Q Consensus 167 ~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~ 246 (293)
.+++++|+++++++.|+|+++++++++.++.+++..|++.++++||+|+|||++|+.++++++++++++.+++++|++|.
T Consensus 166 i~~hnlEt~~~vl~~m~r~~t~e~~le~l~~ak~~gp~i~~~s~iIvG~GET~ed~~etl~~Lrel~~d~v~i~~Yl~p~ 245 (290)
T PRK12928 166 VFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLMLGLGETEDEVIETLRDLRAVGCDRLTIGQYLRPS 245 (290)
T ss_pred hhcccCcCcHHHHHHhCCCCCHHHHHHHHHHHHHhCCCceecccEEEeCCCCHHHHHHHHHHHHhcCCCEEEEEcCCCCC
Confidence 99999999999999999999999999999999999666999999999999999999999999999999999999999999
Q ss_pred CCccccccccChhHHHHHHHHHHHhcccchhcccccccccccCC
Q psy2895 247 RLHLPVHRYLHPKFFEKFKKIAYKLGFKNVLVGSMIRSSYMADK 290 (293)
Q Consensus 247 ~~~~a~~r~~~p~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~ 290 (293)
.+.+++.||+.|++++.+++.|.++||.++++||++||||+|+.
T Consensus 246 ~~~~~v~~~~~~~~f~~~~~~~~~~g~~~~~~~p~~rssy~a~~ 289 (290)
T PRK12928 246 LAHLPVQRYWTPEEFEALGQIARELGFSHVRSGPLVRSSYHAGE 289 (290)
T ss_pred ccCCceeeccCHHHHHHHHHHHHHcCCceeEecCcccccccCCC
Confidence 99999999999999999999999999999999999999999985
No 2
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=100.00 E-value=9.8e-54 Score=378.73 Aligned_cols=281 Identities=53% Similarity=0.946 Sum_probs=262.4
Q ss_pred cccCCCCceeEeccCChhcHHHHHHHHHhcCchhhhhhcCCCCccccccCceeEeeeeCcccCCCCcCcccCCCC-CCCC
Q psy2895 10 EILKKPNWIRVKLISNIDNFNKTKNILRANNLVTVCEEASCPNIGECFGRGVATFMIMGSICTRRCKFCNISHGR-PDPL 88 (293)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~t~~C~~~C~fC~~~~~~-~~~~ 88 (293)
+..++|+|+++.++.| .++.++.+++++..+.++|+.|.||++.++|.+++++|+++++||+.+|+||+++.++ +...
T Consensus 13 ~~~~~p~w~~~~~~~~-~~~~~~~~~~~~~~l~tvc~~a~cpn~~ec~~~~tatfm~i~~gC~~~C~FC~v~~~rg~~~~ 91 (302)
T TIGR00510 13 ILLRKPEWLKIKLPLG-TVIAQIKNTMKNKGLHTVCEEASCPNLTECWNHGTATFMILGDICTRRCPFCDVAHGRNPLPP 91 (302)
T ss_pred ccCCCCcceEecCCCC-chHHHHHHHHHHCCCceeecCCCCCCcccccCCCEEEEEecCcCcCCCCCcCCccCCCCCCCC
Confidence 3467999999999977 8899999999999999999999999999999999999999999999999999998876 3346
Q ss_pred ChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCee
Q psy2895 89 DIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVL 168 (293)
Q Consensus 89 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i 168 (293)
+++++.++++.+.+.|+++|+|+|++.+++++.+.+++.++++.|++..|++.|++++|++... .+.++.|+++|++.+
T Consensus 92 ~~eei~~~a~~~~~~GlkevvLTsv~~ddl~d~g~~~l~~li~~I~~~~p~i~Ievl~~d~~g~-~e~l~~l~~aG~dv~ 170 (302)
T TIGR00510 92 DPEEPAKLAETIKDMGLKYVVITSVDRDDLEDGGASHLAECIEAIREKLPNIKIETLVPDFRGN-IAALDILLDAPPDVY 170 (302)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeecCCCcccccHHHHHHHHHHHHhcCCCCEEEEeCCcccCC-HHHHHHHHHcCchhh
Confidence 7999999999999999999999999987776666789999999999988888999988765443 789999999999999
Q ss_pred eeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCC
Q psy2895 169 NHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIGQYLMPSRL 248 (293)
Q Consensus 169 ~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~ 248 (293)
++++|+++++++.|+++++++++++.++.+++..||+.+++++|+|+|||++|+++++++++++|++.+++++|+.|+.+
T Consensus 171 ~hnlEt~~~l~~~vrr~~t~e~~Le~l~~ak~~~pgi~~~TgiIVGlGETeee~~etl~~Lrelg~d~v~igqYl~p~~~ 250 (302)
T TIGR00510 171 NHNLETVERLTPFVRPGATYRWSLKLLERAKEYLPNLPTKSGIMVGLGETNEEIKQTLKDLRDHGVTMVTLGQYLRPSRR 250 (302)
T ss_pred cccccchHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeecceEEEECCCCHHHHHHHHHHHHhcCCCEEEeecccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccChhHHHHHHHHHHHhcccchhcccccccccccCCCC
Q psy2895 249 HLPVHRYLHPKFFEKFKKIAYKLGFKNVLVGSMIRSSYMADKHF 292 (293)
Q Consensus 249 ~~a~~r~~~p~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 292 (293)
.+++.+++.|++++.+++.|.++||+++++||++||||.|+.+|
T Consensus 251 ~~~v~~~~~p~~f~~~~~~a~~~gf~~v~~~p~vrssy~a~~~~ 294 (302)
T TIGR00510 251 HLPVKRYVSPEEFDYYRSVALEMGFLHAACGPFVRSSYHADSLF 294 (302)
T ss_pred CCccccCCCHHHHHHHHHHHHHcCChheEecccchhhhhHHHHH
Confidence 99999999999999999999999999999999999999998764
No 3
>PLN02428 lipoic acid synthase
Probab=100.00 E-value=1e-52 Score=376.03 Aligned_cols=282 Identities=45% Similarity=0.837 Sum_probs=264.3
Q ss_pred ccccCCCCceeEeccCChhcHHHHHHHHHhcCchhhhhhcCCCCccccccCc-----eeEeeeeCcccCCCCcCcccCCC
Q psy2895 9 IEILKKPNWIRVKLISNIDNFNKTKNILRANNLVTVCEEASCPNIGECFGRG-----VATFMIMGSICTRRCKFCNISHG 83 (293)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~l~~~a~~~~~~~~~~~~-----~~~~~~~t~~C~~~C~fC~~~~~ 83 (293)
.+..++|+|+++.++.| .++.++.+++....+.++|+.|.||++.+||+++ ++++++++++|+.+|.||+++.+
T Consensus 46 ~~~~~~p~wl~~~~~~~-~~~~~~~~~~~~~~l~tvc~~a~cpn~~ec~~~~~~~~~taT~milg~gCtr~CrFCav~~~ 124 (349)
T PLN02428 46 DKPLPKPKWLRQRAPGG-EKYTEIKEKLRELKLNTVCEEAQCPNIGECWNGGGTGTATATIMILGDTCTRGCRFCAVKTS 124 (349)
T ss_pred CCCCCCCcceeecCCCC-chHHHHHHHHHHCCCceeecCCCCCChHHhhCCCCCCCceEEEEEecCCCCCCCCCCcCCCC
Confidence 46778999999999977 8899999999999999999999999999999998 99999999999999999999886
Q ss_pred C-CCCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHH
Q psy2895 84 R-PDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQ 162 (293)
Q Consensus 84 ~-~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~ 162 (293)
+ +...+++++.+.++.+.+.|+++++|+||+.+++++.+.+++.++++.|++..|++++.+++|++..+ ++.++.|++
T Consensus 125 ~~p~~~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~~~~elir~Ir~~~P~i~Ie~L~pdf~~d-~elL~~L~e 203 (349)
T PLN02428 125 RTPPPPDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSGHFAETVRRLKQLKPEILVEALVPDFRGD-LGAVETVAT 203 (349)
T ss_pred CCCCCCChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHHHHHHHHHHHHHhCCCcEEEEeCccccCC-HHHHHHHHH
Confidence 6 34567899999999999999999999999887787888899999999999988888888888877644 899999999
Q ss_pred cCCCeeeeccccchHHHhhcC-CCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEeec
Q psy2895 163 ALPDVLNHNIETVPRLYKKVR-PGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIGQ 241 (293)
Q Consensus 163 aG~~~i~~~less~~~~~~i~-~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~ 241 (293)
+|++.+++++|+++++++.|+ ++++++++++.++.++++.||+.+.+++|+|+|||++|+.++++++++++++.+++.+
T Consensus 204 AG~d~i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGLGET~Edv~e~l~~Lrelgvd~vtigq 283 (349)
T PLN02428 204 SGLDVFAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGLGETDEEVVQTMEDLRAAGVDVVTFGQ 283 (349)
T ss_pred cCCCEEccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEecCCCHHHHHHHHHHHHHcCCCEEeecc
Confidence 999999999999999999999 6789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccccChhHHHHHHHHHHHhcccchhcccccccccccCCCC
Q psy2895 242 YLMPSRLHLPVHRYLHPKFFEKFKKIAYKLGFKNVLVGSMIRSSYMADKHF 292 (293)
Q Consensus 242 ~~~p~~~~~a~~r~~~p~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 292 (293)
|+.|...++++.+|+.|++|+.+++.+.++||.++++||++||||.|+.+|
T Consensus 284 yL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~vrssy~a~~~~ 334 (349)
T PLN02428 284 YLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLVRSSYKAGEFF 334 (349)
T ss_pred ccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCcccchhhhHHHH
Confidence 999999999999999999999999999999999999999999999998764
No 4
>PTZ00413 lipoate synthase; Provisional
Probab=100.00 E-value=1.9e-52 Score=371.90 Aligned_cols=279 Identities=41% Similarity=0.786 Sum_probs=262.3
Q ss_pred cCCCCceeEeccCChh----cHHHHHHHHHhcCchhhhhhcCCCCccccccCc------eeEeeeeCcccCCCCcCcccC
Q psy2895 12 LKKPNWIRVKLISNID----NFNKTKNILRANNLVTVCEEASCPNIGECFGRG------VATFMIMGSICTRRCKFCNIS 81 (293)
Q Consensus 12 ~~~~~~~~~~~~~g~~----~~~~~~~l~~~~~~~~l~~~a~~~~~~~~~~~~------~~~~~~~t~~C~~~C~fC~~~ 81 (293)
+++|+|+++.++.| . .+.++.++++...+.++|+.|.||++.+||+.+ +++|+++++.|+.+|.||+++
T Consensus 91 ~~kP~Wlk~~~~~~-~~~~~~~~~~~~~~~~~~L~TVCeea~CPNi~EC~~~~~~~~~~tATfmilG~~CTr~C~FCaqs 169 (398)
T PTZ00413 91 EPLPPWFKVKVPKG-ASRRPRFNRIRRSMREKKLHTVCEEAKCPNIGECWGGGDEEGTATATIMVMGDHCTRGCRFCSVK 169 (398)
T ss_pred CCCCcceeecCCCC-ccccchHHHHHHHHHhCCCceeeCCCCCCChHHHhCCCCCCCCceeEeeecCCCCCCCCCCCCCC
Confidence 37899999999977 5 799999999999999999999999999999988 999999999999999999999
Q ss_pred CCC-CCCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHH
Q psy2895 82 HGR-PDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIF 160 (293)
Q Consensus 82 ~~~-~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l 160 (293)
.+. +..++++|+.+.|+.+.+.|++++++|+|..+|+++.+.+++.+.++.|++..|++.|.++.|++..+ .+.++.|
T Consensus 170 tg~~p~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~~~a~~I~~Ir~~~p~~~IevligDf~g~-~e~l~~L 248 (398)
T PTZ00413 170 TSRKPPPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGASHVARCVELIKESNPELLLEALVGDFHGD-LKSVEKL 248 (398)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhHHHHHHHHHHHHccCCCCeEEEcCCccccC-HHHHHHH
Confidence 876 56789999999999999999999999999988888888999999999999987888888888887554 7899999
Q ss_pred HHcCCCeeeeccccchHHHhhcCC-CCCHHHHHHHHHHHHHh-CCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEE
Q psy2895 161 KQALPDVLNHNIETVPRLYKKVRP-GSDYKHSLNLLKNFKKL-YPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILT 238 (293)
Q Consensus 161 ~~aG~~~i~~~less~~~~~~i~~-~~~~e~~l~~i~~~~~~-~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~ 238 (293)
++||++.+++++||++++|..++. ++++++.+++++.+++. .||+.+++++|+|+|||++|+.+++..|+++|++.++
T Consensus 249 ~eAG~dvynHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGET~eEvie~m~dLrelGVDivt 328 (398)
T PTZ00413 249 ANSPLSVYAHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGETEEEVRQTLRDLRTAGVSAVT 328 (398)
T ss_pred HhcCCCEEecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCCCHHHHHHHHHHHHHcCCcEEe
Confidence 999999999999999999999994 68999999999999988 5899999999999999999999999999999999999
Q ss_pred eecCCCCCCCccccccccChhHHHHHHHHHHHhcccchhcccccccccccCCCC
Q psy2895 239 IGQYLMPSRLHLPVHRYLHPKFFEKFKKIAYKLGFKNVLVGSMIRSSYMADKHF 292 (293)
Q Consensus 239 i~~~~~p~~~~~a~~r~~~p~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 292 (293)
|++|+.|..+.+++.||+.|++|+.+++.+.++||+++++||++||||+|+..|
T Consensus 329 IGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf~~v~sgPlVRSSY~A~e~~ 382 (398)
T PTZ00413 329 LGQYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLYCASGPLVRSSYRAGEYY 382 (398)
T ss_pred eccccCCCcccCCceeccCHHHHHHHHHHHHHcCCceEEecCccccchhccHHH
Confidence 999999999999999999999999999999999999999999999999999754
No 5
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=100.00 E-value=2.7e-52 Score=351.40 Aligned_cols=282 Identities=56% Similarity=1.046 Sum_probs=273.0
Q ss_pred ccccCCCCceeEeccCChhcHHHHHHHHHhcCchhhhhhcCCCCccccccCceeEeeeeCcccCCCCcCcccCCCCCCCC
Q psy2895 9 IEILKKPNWIRVKLISNIDNFNKTKNILRANNLVTVCEEASCPNIGECFGRGVATFMIMGSICTRRCKFCNISHGRPDPL 88 (293)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~t~~C~~~C~fC~~~~~~~~~~ 88 (293)
.++++.|+|+.+.+|.| ..+.++.+++.+..+.++|++|.||++.+||+.++++|++++..|..+|.||.+..|++..+
T Consensus 19 ~~~~rkP~Wlr~k~p~~-~~~~~~k~~~r~~~L~TVCEEA~CPNi~ECw~~~tATFmImG~~CTR~C~FC~V~~g~P~~l 97 (306)
T COG0320 19 EELLRKPEWLKVKAPTG-SRYQEIKEILRKNGLHTVCEEASCPNIGECWSRGTATFMILGDICTRRCRFCDVKTGRPNPL 97 (306)
T ss_pred chhccCcHhheecCCCC-chHHHHHHHHHhcCCceecccCCCCChHHHhcCCceEEeeccchhccCCCccccCCCCCCCC
Confidence 66889999999999988 99999999999999999999999999999999999999999999999999999999998899
Q ss_pred ChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCee
Q psy2895 89 DIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVL 168 (293)
Q Consensus 89 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i 168 (293)
+++|....|+....+|.++|+||+.+.+||++.+..+|.+.+++|++..|++.|++.+|||..+ ++.++.+.+++.|.+
T Consensus 98 D~~EP~rvAeaV~~mgLkyVViTsVdRDDL~DGGA~hfa~~i~~Ire~~P~t~iEvL~PDF~G~-~~al~~v~~~~pdV~ 176 (306)
T COG0320 98 DPDEPERVAEAVKDMGLKYVVITSVDRDDLPDGGAQHFAECIRAIRELNPQTTIEVLTPDFRGN-DDALEIVADAGPDVF 176 (306)
T ss_pred CCchHHHHHHHHHHhCCCeEEEEeeccccccccchHHHHHHHHHHHhhCCCceEEEeCccccCC-HHHHHHHHhcCcchh
Confidence 9999999999999999999999999999999999999999999999999999999999998876 889999999999999
Q ss_pred eeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCC
Q psy2895 169 NHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIGQYLMPSRL 248 (293)
Q Consensus 169 ~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~ 248 (293)
++++|+.++++..++++.++++.++.++++++..|.+.+.+++|+|+|||.+|+.++|+-|++.|+|.+.|.||+.|+.+
T Consensus 177 nHNvETVprL~~~VRp~A~Y~~SL~~L~~~k~~~P~i~TKSgiMlGLGEt~~Ev~e~m~DLr~~gvdilTiGQYlqPS~~ 256 (306)
T COG0320 177 NHNVETVPRLYPRVRPGATYERSLSLLERAKELGPDIPTKSGLMVGLGETDEEVIEVMDDLRSAGVDILTIGQYLQPSRK 256 (306)
T ss_pred hcccccchhcccccCCCCcHHHHHHHHHHHHHhCCCcccccceeeecCCcHHHHHHHHHHHHHcCCCEEEeccccCCccc
Confidence 99999999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred ccccccccChhHHHHHHHHHHHhcccchhcccccccccccCCCC
Q psy2895 249 HLPVHRYLHPKFFEKFKKIAYKLGFKNVLVGSMIRSSYMADKHF 292 (293)
Q Consensus 249 ~~a~~r~~~p~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 292 (293)
++++.||+.|++|..+++.+.++||.++.+||++||||.|+..|
T Consensus 257 HlpV~ryv~PeeF~~~~~~a~~~GF~~v~sgPlvRSSYhA~~~~ 300 (306)
T COG0320 257 HLPVQRYVTPEEFDELEEVAEEMGFLHVASGPLVRSSYHADEQF 300 (306)
T ss_pred cCCceeccCHHHHHHHHHHHHHccchhhccCcccccccchHHHH
Confidence 99999999999999999999999999999999999999998654
No 6
>PRK05481 lipoyl synthase; Provisional
Probab=100.00 E-value=9.5e-49 Score=347.34 Aligned_cols=282 Identities=57% Similarity=1.020 Sum_probs=254.1
Q ss_pred ccccCCCCceeEeccCChhcHHHHHHHHHhcCchhhhhhcCCCCccccccCceeEeeeeCcccCCCCcCcccCCCCCCCC
Q psy2895 9 IEILKKPNWIRVKLISNIDNFNKTKNILRANNLVTVCEEASCPNIGECFGRGVATFMIMGSICTRRCKFCNISHGRPDPL 88 (293)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~t~~C~~~C~fC~~~~~~~~~~ 88 (293)
+.+.+.|+|+...+|+| .++.++..|++..++.+++..|+++..+.++.+++++|+.+|+||+.+|+||+++..+++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~l~~~~~~a~~~~~~~~~~~~~~~fi~is~GC~~~C~FC~i~~~r~~s~ 80 (289)
T PRK05481 2 EKVARKPDWLRVKLPTG-EEYTEIKKLLRELGLHTVCEEASCPNIGECWSRGTATFMILGDICTRRCPFCDVATGRPLPL 80 (289)
T ss_pred CCCCCCCcceeecCCCC-hhHHHHHHHHHhCChHHHHHhhCCCcchhccCCCeEEEEEecccccCCCCCceeCCCCCCCC
Confidence 45667999999999988 99999999999999999999999665544788889999999999999999999998776779
Q ss_pred ChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCee
Q psy2895 89 DIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVL 168 (293)
Q Consensus 89 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i 168 (293)
++++|+++++++.+.|+++|+|+||+.+++++.+.+++.++++.|++..|+++|+++++..... .+.+..++++|.+.+
T Consensus 81 ~~eeI~~ea~~l~~~G~kEI~L~gg~~~d~~~~~~~~l~~Ll~~I~~~~p~irI~~l~~~~~~~-~e~L~~l~~ag~~i~ 159 (289)
T PRK05481 81 DPDEPERVAEAVARMGLKYVVITSVDRDDLPDGGAQHFAETIRAIRELNPGTTIEVLIPDFRGR-MDALLTVLDARPDVF 159 (289)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEEeeCCCcccccHHHHHHHHHHHHhhCCCcEEEEEccCCCCC-HHHHHHHHhcCccee
Confidence 9999999999999999999999999865554334578999999999887888888888744433 578888889999999
Q ss_pred eeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCC
Q psy2895 169 NHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIGQYLMPSRL 248 (293)
Q Consensus 169 ~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~ 248 (293)
.+.+++++++++.|+|+++++++++.++.+++++||+.+++++|+|+|||++|++++++++++++++.+++++|++|..+
T Consensus 160 ~~~~ets~~vlk~m~r~~t~e~~le~i~~ar~~~pgi~~~t~~IvGfGET~ed~~~tl~~lrel~~d~v~if~Ys~pa~k 239 (289)
T PRK05481 160 NHNLETVPRLYKRVRPGADYERSLELLKRAKELHPGIPTKSGLMVGLGETDEEVLEVMDDLRAAGVDILTIGQYLQPSRK 239 (289)
T ss_pred eccccChHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeEeeeeEEECCCCHHHHHHHHHHHHhcCCCEEEEEccCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988774
Q ss_pred ccccccccChhHHHHHHHHHHHhcccchhcccccccccccCCCC
Q psy2895 249 HLPVHRYLHPKFFEKFKKIAYKLGFKNVLVGSMIRSSYMADKHF 292 (293)
Q Consensus 249 ~~a~~r~~~p~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 292 (293)
.+++...+.++.+.++.+.+.++||.++.+||++||||+|+.++
T Consensus 240 ~~~v~~~~k~~r~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 283 (289)
T PRK05481 240 HLPVERYVTPEEFDEYKEIALELGFLHVASGPLVRSSYHADEQA 283 (289)
T ss_pred cCCCCCcCCHHHHHHHHHHHHHcCchheEecCccccchhhHHHH
Confidence 55888888899999999999999999999999999999998764
No 7
>KOG2672|consensus
Probab=100.00 E-value=4.1e-42 Score=289.19 Aligned_cols=280 Identities=44% Similarity=0.819 Sum_probs=260.3
Q ss_pred ccCCCCceeEeccCChhcHHHHHHHHHhcCchhhhhhcCCCCccccccCc-----eeEeeeeCcccCCCCcCcccCCCC-
Q psy2895 11 ILKKPNWIRVKLISNIDNFNKTKNILRANNLVTVCEEASCPNIGECFGRG-----VATFMIMGSICTRRCKFCNISHGR- 84 (293)
Q Consensus 11 ~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~l~~~a~~~~~~~~~~~~-----~~~~~~~t~~C~~~C~fC~~~~~~- 84 (293)
=++.|+|+...+|.| .++.++..-+....+.++|++|.||++.+||+++ +++++.++.-|...|.||++...|
T Consensus 57 ~~rlP~WLK~~iP~G-~n~~~iK~~lr~l~L~TVCEEArCPNiGECWgG~d~~~ATATIMlmGDTCTRGCRFCsVKTsR~ 135 (360)
T KOG2672|consen 57 RLRLPPWLKTKIPLG-ENYNKIKKDLRELKLHTVCEEARCPNIGECWGGGDKSTATATIMLMGDTCTRGCRFCSVKTSRN 135 (360)
T ss_pred cccCChhhcccCCCC-ccHHHHHHHHhhCchhhhhhhccCCchhhccCCCCCcceeEEEEeecCccccCcceeeeecCCC
Confidence 356799999999988 9999999999988999999999999999999874 566788899999999999998865
Q ss_pred CCCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcC
Q psy2895 85 PDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQAL 164 (293)
Q Consensus 85 ~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG 164 (293)
+..+++-|....++.++.+|+.+|+||+.+.+|+++.+..++.+.++.|+++.|++-|+..+|||..+ .+.++.+...|
T Consensus 136 PpPlDp~EPeNTAeAIasWgl~YiVlTSVDRDDlpDgGa~HiAkTVq~iK~k~p~ilvE~L~pDF~Gd-~~~Ve~va~SG 214 (360)
T KOG2672|consen 136 PPPLDPNEPENTAEAIASWGLDYIVLTSVDRDDLPDGGANHIAKTVQKIKEKAPEILVECLTPDFRGD-LKAVEKVAKSG 214 (360)
T ss_pred CcCCCCCCcccHHHHHHHcCCCeEEEEecccccCcCcchHHHHHHHHHHHhhCcccchhhcCccccCc-hHHHHHHHhcC
Confidence 56788888899999999999999999999999999999999999999999999988888889999887 77899999999
Q ss_pred CCeeeeccccchHHHhhcC-CCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEeecCC
Q psy2895 165 PDVLNHNIETVPRLYKKVR-PGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIGQYL 243 (293)
Q Consensus 165 ~~~i~~~less~~~~~~i~-~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~~~ 243 (293)
+|.+.+++|+.+++-..++ |..++++.+.+++.+++..|++.+.+.||.|+|||+|++..+++.+++.++|.+.+.+|+
T Consensus 215 LDV~AHNvETVe~Ltp~VRD~RA~yrQSL~VLk~aK~~~P~litktsiMlglgetdeei~~tl~dLr~~~vdv~t~gqym 294 (360)
T KOG2672|consen 215 LDVYAHNVETVEELTPFVRDPRANYRQSLSVLKHAKEVKPGLITKTSIMLGLGETDEEIKQTLKDLRAADVDVVTFGQYM 294 (360)
T ss_pred ccceecchhhHHhcchhhcCcccchHHhHHHHHHHHhhCCCceehhhhhhccCCCHHHHHHHHHHHHHcCCcEEeccccc
Confidence 9999999999999988888 567999999999999999999988999999999999999999999999999999999999
Q ss_pred CCCCCccccccccChhHHHHHHHHHHHhcccchhcccccccccccCCCC
Q psy2895 244 MPSRLHLPVHRYLHPKFFEKFKKIAYKLGFKNVLVGSMIRSSYMADKHF 292 (293)
Q Consensus 244 ~p~~~~~a~~r~~~p~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 292 (293)
+|..+.+.+..++.|+.+..+++.+.++||.++.+|++.||+|.|+..|
T Consensus 295 ~ptkrhl~v~eyvtpekf~~w~~~~~~lgf~y~AsgplvrSsykage~~ 343 (360)
T KOG2672|consen 295 QPTKRHLKVKEYVTPEKFDYWKEYGEELGFLYVASGPLVRSSYKAGEYF 343 (360)
T ss_pred CCccccceeEEeeCHHHHHHHHHHhhhcceEEeccCceeechhhhhHHH
Confidence 9999999999999999999999999999999999999999999998644
No 8
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.9e-34 Score=260.33 Aligned_cols=239 Identities=18% Similarity=0.286 Sum_probs=192.8
Q ss_pred ccccCCCCceeEeccCChhcHHHHHHHHHhcCc----h----hhhhhcCCCCccccccCceeEeeeeCcccCCCCcCccc
Q psy2895 9 IEILKKPNWIRVKLISNIDNFNKTKNILRANNL----V----TVCEEASCPNIGECFGRGVATFMIMGSICTRRCKFCNI 80 (293)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~----~----~l~~~a~~~~~~~~~~~~~~~~~~~t~~C~~~C~fC~~ 80 (293)
..+++..|+||.++ |+++++.+.++++.... . ++......+.+...+.++..+|+.++.||+++|+||.+
T Consensus 86 ~~i~~~~p~vd~v~--G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~v~I~eGCn~~CtfCii 163 (437)
T COG0621 86 EEILERAPEVDIVL--GPQNKERLPEAIEKALRGKKEFVVVLSFPEEEKFDKLPPRREGGVRAFVKIQEGCNKFCTFCII 163 (437)
T ss_pred HHHHhhCCCceEEE--CCccHHHHHHHHHHHhhcccccccccccccccccccCCCCcCCCeEEEEEhhcCcCCCCCeeee
Confidence 56788889999999 77999999888865311 0 11000000011112445688888899999999999999
Q ss_pred CCCC--CCCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCC-CCC--hhHHHHHHHHHHhhCCCcEEEEEc--CCCcCcH
Q psy2895 81 SHGR--PDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLH-DGG--SSHFVSCIKHIRKLSTKIKIEILI--PDFRNQI 153 (293)
Q Consensus 81 ~~~~--~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~-~~~--~~~~~~ll~~i~~~~~~~~i~~~~--~~~~~~~ 153 (293)
|+.| .+++++++|+++++.+.+.|+++|+|+|++...|- +.. ...|.+|++.+.+.....+|++.+ |.-++
T Consensus 164 P~~RG~~rSr~~e~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~I~G~~riR~~~~~P~~~~-- 241 (437)
T COG0621 164 PYARGKERSRPPEDILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGGGKPNLADLLRELSKIPGIERIRFGSSHPLEFT-- 241 (437)
T ss_pred eccCCCccCCCHHHHHHHHHHHHHCCCeEEEEEEEehhhccccCCCCccCHHHHHHHHhcCCCceEEEEecCCchhcC--
Confidence 9855 46789999999999999999999999999975551 111 356999999998853346888866 52233
Q ss_pred HHHHHHHHHc--CCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHHHH
Q psy2895 154 NHVLKIFKQA--LPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHDM 229 (293)
Q Consensus 154 ~e~l~~l~~a--G~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~~l 229 (293)
++.++.+++. -+..+|+++|| |+++++.|+|+|+.+++++.++.+|+++|++.++|++|||| |||+|||+++++++
T Consensus 242 d~lI~~~~~~~kv~~~lHlPvQsGsd~ILk~M~R~yt~e~~~~~i~k~R~~~Pd~~i~tDiIVGFPgETeedFe~tl~lv 321 (437)
T COG0621 242 DDLIEAIAETPKVCPHLHLPVQSGSDRILKRMKRGYTVEEYLEIIEKLRAARPDIAISTDIIVGFPGETEEDFEETLDLV 321 (437)
T ss_pred HHHHHHHhcCCcccccccCccccCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCCceEeccEEEECCCCCHHHHHHHHHHH
Confidence 7888888763 36778999999 89999999999999999999999999999999999999999 99999999999999
Q ss_pred HhCCCCEEEeecCCCCCCCcccc
Q psy2895 230 RNHNIDILTIGQYLMPSRLHLPV 252 (293)
Q Consensus 230 ~~l~~~~i~i~~~~~p~~~~~a~ 252 (293)
++++++.+++++| +|.+++.|.
T Consensus 322 ~e~~fd~~~~F~Y-SpRpGTpAa 343 (437)
T COG0621 322 EEVRFDRLHVFKY-SPRPGTPAA 343 (437)
T ss_pred HHhCCCEEeeeec-CCCCCCccc
Confidence 9999999999955 788988876
No 9
>PRK08444 hypothetical protein; Provisional
Probab=100.00 E-value=3.5e-34 Score=259.92 Aligned_cols=237 Identities=18% Similarity=0.236 Sum_probs=194.0
Q ss_pred hcHHHHHHHHHhcCchhhhhhcCCCCccccccCceeEe-----eeeCcccCCCCcCcccCCCCC----CCCChhHHHHHH
Q psy2895 27 DNFNKTKNILRANNLVTVCEEASCPNIGECFGRGVATF-----MIMGSICTRRCKFCNISHGRP----DPLDIEEPKKIA 97 (293)
Q Consensus 27 ~~~~~~~~l~~~~~~~~l~~~a~~~~~~~~~~~~~~~~-----~~~t~~C~~~C~fC~~~~~~~----~~~~~eei~~~~ 97 (293)
-+.+++..|+. .++..|+..|+ .+|+++.++.++| +.+||.|..+|.||+|+..+. ..+++|+|++.+
T Consensus 13 ls~eeal~Ll~-~dl~~L~~~A~--~vR~~~~G~~Vt~~~n~~In~TN~C~~~C~FCaf~~~~~~~~~y~ls~eeI~~~a 89 (353)
T PRK08444 13 LNQEEAVKLYD-LDLFTLGKYAD--KKRTKLHGKKVYFNVNRHINPTNICADVCKFCAFSAHRKNPNPYTMSHEEILEIV 89 (353)
T ss_pred CCHHHHHHHhh-cCHHHHHHHHH--HHHHHhcCCEEEEEecCCcccccccccCCccCCCccCCCCCccccCCHHHHHHHH
Confidence 66888888885 47888999998 8887655543332 345899999999999987432 358999999999
Q ss_pred HHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcC-CC--c-----CcHHHHHHHHHHcCCCeee
Q psy2895 98 YTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIP-DF--R-----NQINHVLKIFKQALPDVLN 169 (293)
Q Consensus 98 ~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~-~~--~-----~~~~e~l~~l~~aG~~~i~ 169 (293)
+++.+.|++++.++||..++. +.+++.++++.|++.+|++.++.+++ ++ + -..+|.+.+|++||+++++
T Consensus 90 ~~a~~~G~~ei~iv~G~~p~~---~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl~~~~ 166 (353)
T PRK08444 90 KNSVKRGIKEVHIVSAHNPNY---GYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYGVDSMP 166 (353)
T ss_pred HHHHHCCCCEEEEeccCCCCC---CHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHHHHHHhCcccCC
Confidence 999999999999999987544 47899999999999999888888665 21 1 1127999999999999999
Q ss_pred e-cccc-chHHHhhcCCCC-CHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEeecCCCCC
Q psy2895 170 H-NIET-VPRLYKKVRPGS-DYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIGQYLMPS 246 (293)
Q Consensus 170 ~-~les-s~~~~~~i~~~~-~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~ 246 (293)
+ +.|. ++++++.++++| +.++|+++++.++++ |+++++++|+|+|||.+|+.+++..++++++++++++.|. |.
T Consensus 167 g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~--Gi~~~sg~l~G~gEt~edrv~hl~~Lr~Lq~~t~gf~~fI-p~ 243 (353)
T PRK08444 167 GGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKK--GKMSNATMLFGHIENREHRIDHMLRLRDLQDKTGGFNAFI-PL 243 (353)
T ss_pred CCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHc--CCCccceeEEecCCCHHHHHHHHHHHHHhccccCCceEEE-ec
Confidence 8 6898 799999999977 558899999999999 9999999999999999999999999999999987765332 21
Q ss_pred --------------------CCccccccccChhHHHHHHHHHHHhcc
Q psy2895 247 --------------------RLHLPVHRYLHPKFFEKFKKIAYKLGF 273 (293)
Q Consensus 247 --------------------~~~~a~~r~~~p~~~~~~~~~~~~~G~ 273 (293)
.+++|++|+++|+ +.+++..|..+|.
T Consensus 244 ~f~~~~t~l~~~~~~~~~e~Lr~iAi~Rl~L~~-i~ni~a~w~~~g~ 289 (353)
T PRK08444 244 VYQRENNYLKVEKFPSSQEILKTIAISRILLDN-IPHIKAYWATLTL 289 (353)
T ss_pred ccCCCCCcCCCCCCCCHHHHHHHHHHHHHhcCC-CCccccccccCcH
Confidence 0678888988876 5566666666555
No 10
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=100.00 E-value=2.5e-33 Score=247.91 Aligned_cols=223 Identities=22% Similarity=0.316 Sum_probs=186.1
Q ss_pred hcHHHHHHHHHhcCch-hhhhhcCCCCccccccCc-eeEe--eee-CcccCCCCcCcccCCCCC------CCCChhHHHH
Q psy2895 27 DNFNKTKNILRANNLV-TVCEEASCPNIGECFGRG-VATF--MIM-GSICTRRCKFCNISHGRP------DPLDIEEPKK 95 (293)
Q Consensus 27 ~~~~~~~~l~~~~~~~-~l~~~a~~~~~~~~~~~~-~~~~--~~~-t~~C~~~C~fC~~~~~~~------~~~~~eei~~ 95 (293)
-+.+++..++...+.. .|+..|. .+|.+|.++ +.+. +.+ |.+|+.+|.||++++... ..++.|+|++
T Consensus 14 ~~~~e~~~l~~~~~~~~~L~~aA~--~~R~~~~g~~V~l~~ii~iktg~c~edC~yC~qS~~~~~~~~~~~l~~~eeIle 91 (335)
T COG0502 14 WTLDEALALLDLPDEDELLFEAAQ--KHRLHFDGNEVQLSTLISIKTGCCPEDCAYCSQSARYKTGVKARKLMEVEEILE 91 (335)
T ss_pred cCHHHHHHHHcCCcchHHHHHHHH--HHHHhcCCCeEEEEEEEEeecCCCCCCCCCccccccCcCCCchhhcCCHHHHHH
Confidence 4567787787654444 6888888 888877665 4443 333 566799999999987431 3589999999
Q ss_pred HHHHHHHCC-CcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcC-CCcCcHHHHHHHHHHcCCCeeeeccc
Q psy2895 96 IAYTINKLK-LNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIP-DFRNQINHVLKIFKQALPDVLNHNIE 173 (293)
Q Consensus 96 ~~~~~~~~G-~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~-~~~~~~~e~l~~l~~aG~~~i~~~le 173 (293)
.|+.+.+.| .+.+.+++|.. .+...+++.++++.|++. .+++++.+ |.++ .|.+++|+++|++++++++|
T Consensus 92 ~Ak~ak~~Ga~r~c~~aagr~---~~~~~~~i~~~v~~Vk~~---~~le~c~slG~l~--~eq~~~L~~aGvd~ynhNLe 163 (335)
T COG0502 92 AAKKAKAAGATRFCMGAAGRG---PGRDMEEVVEAIKAVKEE---LGLEVCASLGMLT--EEQAEKLADAGVDRYNHNLE 163 (335)
T ss_pred HHHHHHHcCCceEEEEEeccC---CCccHHHHHHHHHHHHHh---cCcHHhhccCCCC--HHHHHHHHHcChhheecccc
Confidence 999999999 57888888874 124578999999999964 35676554 7777 89999999999999999999
Q ss_pred cchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCC-CCEEEeecCCCCCC-----
Q psy2895 174 TVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHN-IDILTIGQYLMPSR----- 247 (293)
Q Consensus 174 ss~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~-~~~i~i~~~~~p~~----- 247 (293)
|+++.|+++++++++++++++++.++++ |+.++++.|+|+|||.+|..+++..++++. +++|+|+ ++.|.+
T Consensus 164 Ts~~~y~~I~tt~t~edR~~tl~~vk~~--Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~pdsVPIn-~l~P~~GTPle 240 (335)
T COG0502 164 TSPEFYENIITTRTYEDRLNTLENVREA--GIEVCSGGIVGLGETVEDRAELLLELANLPTPDSVPIN-FLNPIPGTPLE 240 (335)
T ss_pred cCHHHHcccCCCCCHHHHHHHHHHHHHc--CCccccceEecCCCCHHHHHHHHHHHHhCCCCCeeeee-eecCCCCCccc
Confidence 9999999999999999999999999999 999999999999999999999999999999 9999998 777754
Q ss_pred -----------CccccccccChhHHH
Q psy2895 248 -----------LHLPVHRYLHPKFFE 262 (293)
Q Consensus 248 -----------~~~a~~r~~~p~~~~ 262 (293)
+++|++|+++|+...
T Consensus 241 ~~~~~~~~e~lk~IA~~Ri~~P~~~I 266 (335)
T COG0502 241 NAKPLDPFEFLKTIAVARIIMPKSMI 266 (335)
T ss_pred cCCCCCHHHHHHHHHHHHHHCCccee
Confidence 688888988887643
No 11
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=100.00 E-value=2.9e-32 Score=248.38 Aligned_cols=228 Identities=18% Similarity=0.256 Sum_probs=182.7
Q ss_pred cHHHHHHHHHh-cCchhhhhhcCCCCccccccCceeEe-----eeeCcccCCCCcCcccCCCCC----CCCChhHHHHHH
Q psy2895 28 NFNKTKNILRA-NNLVTVCEEASCPNIGECFGRGVATF-----MIMGSICTRRCKFCNISHGRP----DPLDIEEPKKIA 97 (293)
Q Consensus 28 ~~~~~~~l~~~-~~~~~l~~~a~~~~~~~~~~~~~~~~-----~~~t~~C~~~C~fC~~~~~~~----~~~~~eei~~~~ 97 (293)
+.++++.|+.. .++..|+..|+ .+++++.++.+.+ +.+|++|+.+|.||+++.... ..+++|+|++.+
T Consensus 2 s~~e~~~ll~~~~~~~~L~~~A~--~ir~~~~g~~v~~~~~~~i~~T~~C~~~C~FC~~~~~~~~~~~y~ls~eeI~e~~ 79 (343)
T TIGR03551 2 TKEEALELFEARGNLFELFRLAD--ELRRDIVGDTVTYVVNRNINFTNVCYGGCGFCAFRKRKGDADAYLLSLEEIAERA 79 (343)
T ss_pred CHHHHHHHHhCCChHHHHHHHHH--HHHHHhcCCeEEEEeeeccccccccccCCccCCCccCCCCCCcccCCHHHHHHHH
Confidence 36778888865 56778888898 8887655544333 345899999999999976321 358999999999
Q ss_pred HHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcC----------CCcCcHHHHHHHHHHcCCCe
Q psy2895 98 YTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIP----------DFRNQINHVLKIFKQALPDV 167 (293)
Q Consensus 98 ~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~----------~~~~~~~e~l~~l~~aG~~~ 167 (293)
+.+.+.|+++|.|+||+.+++ +.+++.++++.|++.+|++.+..+++ +..+ +|.+++|++||+++
T Consensus 80 ~~~~~~G~~~i~l~gG~~p~~---~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~--~e~l~~LkeAGl~~ 154 (343)
T TIGR03551 80 AEAWKAGATEVCIQGGIHPDL---DGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSV--EEALKRLKEAGLDS 154 (343)
T ss_pred HHHHHCCCCEEEEEeCCCCCC---CHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCH--HHHHHHHHHhCccc
Confidence 999999999999999876433 46889999999999888777766432 4444 89999999999999
Q ss_pred eee-cccc-chHHHhhcCCCC-CHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCC------EEE
Q psy2895 168 LNH-NIET-VPRLYKKVRPGS-DYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNID------ILT 238 (293)
Q Consensus 168 i~~-~les-s~~~~~~i~~~~-~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~------~i~ 238 (293)
++. +.|+ ++++++++++++ ++++|+++++.++++ |+.+++++|+|+|||.+|+.+++.++++++++ +++
T Consensus 155 i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~--Gi~v~s~~i~G~~Et~ed~~~~l~~lr~l~~~~~~~~~~iP 232 (343)
T TIGR03551 155 MPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKL--GIPTTATIMYGHVETPEHWVDHLLILREIQEETGGFTEFVP 232 (343)
T ss_pred ccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHc--CCcccceEEEecCCCHHHHHHHHHHHHHhhHHhCCeeEEEe
Confidence 984 5677 689999999865 999999999999999 99999999999999999999999999999987 456
Q ss_pred eecCCCCCC------------------CccccccccChhHHHHHH
Q psy2895 239 IGQYLMPSR------------------LHLPVHRYLHPKFFEKFK 265 (293)
Q Consensus 239 i~~~~~p~~------------------~~~a~~r~~~p~~~~~~~ 265 (293)
++ |++|.. +++|++|+++|+...++.
T Consensus 233 ~~-f~~~gT~l~~~~~~~~~~~~~~~lr~iAv~Rl~lp~~~~~i~ 276 (343)
T TIGR03551 233 LP-FVHYNAPLYLKGMARPGPTGREDLKVHAIARILLHGLIDNIQ 276 (343)
T ss_pred cc-ccCCCCccccccCCCCCCCHHHHHHHHHHHHHhCCCcccCee
Confidence 53 444310 577788888887544443
No 12
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=99.98 E-value=4.8e-32 Score=247.49 Aligned_cols=232 Identities=16% Similarity=0.228 Sum_probs=186.7
Q ss_pred hcHHHHHHHHHhcCchhhhhhcCCCCccccc-cCceeEe----eeeCcccCCCCcCcccCCCCC---C-CCChhHHHHHH
Q psy2895 27 DNFNKTKNILRANNLVTVCEEASCPNIGECF-GRGVATF----MIMGSICTRRCKFCNISHGRP---D-PLDIEEPKKIA 97 (293)
Q Consensus 27 ~~~~~~~~l~~~~~~~~l~~~a~~~~~~~~~-~~~~~~~----~~~t~~C~~~C~fC~~~~~~~---~-~~~~eei~~~~ 97 (293)
-+.+++..|+...++..|+..|+ .+++++ ++.+.+. +..|++|+.+|.||+++.... . .+++|+|++.+
T Consensus 11 ls~~e~~~L~~~~~~~~L~~~A~--~vr~~~~g~~v~~~~~~~in~Tn~C~~~C~FCa~~~~~~~~~~y~l~~eeI~~~a 88 (351)
T TIGR03700 11 LSFEDGLFLYASDDLLTLGELAA--LVRERKHGDKVYFNVNRHLNYTNICVNGCAFCAFQRERGEPGAYAMSLEEIVARV 88 (351)
T ss_pred CCHHHHHHHcCCCcHHHHHHHHH--HHHHHhcCCeEEEeccCCcccccccccCCccCceeCCCCCcccCCCCHHHHHHHH
Confidence 56788989987777888999998 888754 4443332 445899999999999987432 2 38999999999
Q ss_pred HHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcC----------CCcCcHHHHHHHHHHcCCCe
Q psy2895 98 YTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIP----------DFRNQINHVLKIFKQALPDV 167 (293)
Q Consensus 98 ~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~----------~~~~~~~e~l~~l~~aG~~~ 167 (293)
+++.+.|++++.++||+.+++ +.+++.++++.|++.+|++.+..+++ +... +|.+++|++||+++
T Consensus 89 ~~~~~~G~~~v~l~~G~~p~~---~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~--~e~l~~LkeAGld~ 163 (351)
T TIGR03700 89 KEAYAPGATEVHIVGGLHPNL---PFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPT--EEVLDELKEAGLDS 163 (351)
T ss_pred HHHHHCCCcEEEEecCCCCCC---CHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCH--HHHHHHHHHcCCCc
Confidence 999999999999999987543 36899999999999988888877653 2233 78899999999999
Q ss_pred eee-cccc-chHHHhhcCCCC-CHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCE------EE
Q psy2895 168 LNH-NIET-VPRLYKKVRPGS-DYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDI------LT 238 (293)
Q Consensus 168 i~~-~les-s~~~~~~i~~~~-~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~------i~ 238 (293)
+++ ++|+ ++++++.+++++ +.++|+++++.++++ |+.+++++|+|+|||++|+.+++..++++++++ ++
T Consensus 164 ~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~--Gi~~~sg~i~GlgEt~edrv~~l~~Lr~l~~~~~~f~~fiP 241 (351)
T TIGR03700 164 MPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHEL--GLKTNATMLYGHIETPAHRVDHMLRLRELQDETGGFQAFIP 241 (351)
T ss_pred CCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHc--CCCcceEEEeeCCCCHHHHHHHHHHHHHhhHhhCCceEEEe
Confidence 985 8999 799999999865 678999999999999 999999999999999999999999999999865 55
Q ss_pred eecCCCCC--------C--------CccccccccChhHHHHHHHHHH
Q psy2895 239 IGQYLMPS--------R--------LHLPVHRYLHPKFFEKFKKIAY 269 (293)
Q Consensus 239 i~~~~~p~--------~--------~~~a~~r~~~p~~~~~~~~~~~ 269 (293)
++ |.++. + +++|++|+++|+ +.+++..|.
T Consensus 242 ~~-f~~~~tpl~~~~~~~~~~~e~lr~iA~~Rl~l~~-i~~i~a~w~ 286 (351)
T TIGR03700 242 LA-FQPDNNRLNRLLAKGPTGLDDLKTLAVSRLYLDN-IPHIKAYWV 286 (351)
T ss_pred ec-ccCCCCcccCCCCCCCCHHHHHHHHHHHHHhcCC-CCccccccc
Confidence 53 43210 1 577788888876 444443333
No 13
>PRK08445 hypothetical protein; Provisional
Probab=99.98 E-value=2.1e-32 Score=248.68 Aligned_cols=238 Identities=18% Similarity=0.240 Sum_probs=188.6
Q ss_pred hcHHHHHHHHHhcCchhhhhhcCCCCccccc-cCceeEeee-----eCcccCCCCcCcccCCCC--C--CCCChhHHHHH
Q psy2895 27 DNFNKTKNILRANNLVTVCEEASCPNIGECF-GRGVATFMI-----MGSICTRRCKFCNISHGR--P--DPLDIEEPKKI 96 (293)
Q Consensus 27 ~~~~~~~~l~~~~~~~~l~~~a~~~~~~~~~-~~~~~~~~~-----~t~~C~~~C~fC~~~~~~--~--~~~~~eei~~~ 96 (293)
-+.++++.|+...++..|+..|+ .+|+++ ++++.+|++ +|++|+.+|.||+++... + ..+++|+|.+.
T Consensus 4 ls~~e~l~Ll~~~~l~~L~~~A~--~vr~~~~g~~v~~~~~~~~in~Tn~C~~~C~FCa~~~~~~~~~~y~l~~eeI~~~ 81 (348)
T PRK08445 4 LSKEEALDLIKNAPLKELGEMAL--ERKQELHPEKITTFIVDRNINYTNICWVDCKFCAFYRHLKEDDAYILSFEEIDKK 81 (348)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHH--HHHHHHcCCcEEEEecccccccccccccCCccCCCccCCCCCCCeeCCHHHHHHH
Confidence 35678888887778888999998 888765 566666543 489999999999998742 2 24799999999
Q ss_pred HHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcC---CCcC-----cHHHHHHHHHHcCCCee
Q psy2895 97 AYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIP---DFRN-----QINHVLKIFKQALPDVL 168 (293)
Q Consensus 97 ~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~---~~~~-----~~~e~l~~l~~aG~~~i 168 (293)
++++.+.|.++|+++||.++++ +.+++.++++.|++.+|++.+..+++ ++.. ..+|.+++|++||++++
T Consensus 82 ~~~a~~~g~~~i~~~gg~~~~~---~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAGl~~~ 158 (348)
T PRK08445 82 IEELLAIGGTQILFQGGVHPKL---KIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEVLERLQAKGLSSI 158 (348)
T ss_pred HHHHHHcCCCEEEEecCCCCCC---CHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHHHHHHHHcCCCCC
Confidence 9999999999999999887544 47899999999999999877776543 1111 12799999999999999
Q ss_pred e-ecccc-chHHHhhcCC-CCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEeec----
Q psy2895 169 N-HNIET-VPRLYKKVRP-GSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIGQ---- 241 (293)
Q Consensus 169 ~-~~les-s~~~~~~i~~-~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~---- 241 (293)
+ .++|+ ++++++.+++ +.+.++|+++++.++++ |+++++++|+|+|||.+|+.+++..++++++++.++..
T Consensus 159 ~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~--Gi~~~sg~i~G~~Et~edr~~~l~~lreLq~~~~g~~~fi~~ 236 (348)
T PRK08445 159 PGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLI--GMKSTATMMFGTVENDEEIIEHWERIRDLQDETGGFRAFILW 236 (348)
T ss_pred CCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHc--CCeeeeEEEecCCCCHHHHHHHHHHHHHHHHHhCCeeEEecc
Confidence 7 58999 7999999976 56999999999999999 99999999999999999999999999999987633322
Q ss_pred CCCCC--C-----------------CccccccccChhHHHHHHHHHHHhc
Q psy2895 242 YLMPS--R-----------------LHLPVHRYLHPKFFEKFKKIAYKLG 272 (293)
Q Consensus 242 ~~~p~--~-----------------~~~a~~r~~~p~~~~~~~~~~~~~G 272 (293)
.++|. + +++|++|+++|+ +.+++..|..+|
T Consensus 237 ~~~p~~tpl~~~~~~~~~~~~~e~Lr~iAv~Rl~l~~-~~~i~a~~~~~g 285 (348)
T PRK08445 237 SFQPDNTPLKEEIPEIKKQSSNRYLRLLAVSRLFLDN-FKNIQSSWVTQG 285 (348)
T ss_pred ccCCCCCcccccCCCCCCCCHHHHHHHHHHHHHhCCC-CCCccCCCcccC
Confidence 12220 0 566778888876 455554444343
No 14
>PRK05926 hypothetical protein; Provisional
Probab=99.98 E-value=4.5e-32 Score=247.57 Aligned_cols=238 Identities=15% Similarity=0.145 Sum_probs=192.3
Q ss_pred hhcHHHHHHHHHh---cCchhhhhhcCCCCccccccC-ceeEeee----eCcccCCCCcCcccCCCCC----CCCChhHH
Q psy2895 26 IDNFNKTKNILRA---NNLVTVCEEASCPNIGECFGR-GVATFMI----MGSICTRRCKFCNISHGRP----DPLDIEEP 93 (293)
Q Consensus 26 ~~~~~~~~~l~~~---~~~~~l~~~a~~~~~~~~~~~-~~~~~~~----~t~~C~~~C~fC~~~~~~~----~~~~~eei 93 (293)
.-+.+++..|+.. .++..|+..|+ .+|+++.+ .+.++.+ .||.|+.+|.||+|++... ..+++|+|
T Consensus 27 ~ls~eeal~Ll~~~~~~~l~~L~~~A~--~iR~~~~G~~V~~~~~~nin~Tn~C~~dC~FCaf~~~~~~~~~~~ls~eeI 104 (370)
T PRK05926 27 RLSEEDALQLLLLTDAEDQRALWSFAD--LIRANRVGDTVYYSSTLYLYPTNFCQFNCTFCSFYAKPGDPKGWFYTPDQL 104 (370)
T ss_pred CCCHHHHHHHHhCCCchHHHHHHHHHH--HHHHHhcCCeEEEEEeeeeecCCCCCCCCCccccccCCCCcccccCCHHHH
Confidence 3678888888832 45778889998 88875444 4444332 4899999999999876431 35899999
Q ss_pred HHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcC----------CCcCcHHHHHHHHHHc
Q psy2895 94 KKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIP----------DFRNQINHVLKIFKQA 163 (293)
Q Consensus 94 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~----------~~~~~~~e~l~~l~~a 163 (293)
++.++++ +.|++++.++||..|++ +.+++.++++.|++.+|++.+..+++ +... +|.+++|++|
T Consensus 105 ~~~a~~a-~~G~~ei~iv~G~~p~~---~~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~~~~--~e~l~~LkeA 178 (370)
T PRK05926 105 VQSIKEN-PSPITETHIVAGCFPSC---NLAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDNLPV--KEVLQTLKIA 178 (370)
T ss_pred HHHHHHH-hcCCCEEEEEeCcCCCC---CHHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcCCCH--HHHHHHHHHc
Confidence 9999998 68999999999987543 47899999999999988888777653 1122 7889999999
Q ss_pred CCCeeee-cccc-chHHHhhcCCCC-CHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 164 LPDVLNH-NIET-VPRLYKKVRPGS-DYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 164 G~~~i~~-~les-s~~~~~~i~~~~-~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
|++++++ ++|+ ++++++.++|+. +.++|+++++.++++ |+.+++++|+|+|||.+|+.+++..|++++++++++.
T Consensus 179 Gl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~~--Gi~~~sgmi~G~gEt~edrv~~l~~Lr~Lq~~t~gf~ 256 (370)
T PRK05926 179 GLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHSL--GIPSNATMLCYHRETPEDIVTHMSKLRALQDKTSGFK 256 (370)
T ss_pred CcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHc--CCcccCceEEeCCCCHHHHHHHHHHHHhcCCccCCee
Confidence 9999998 5999 799999999754 889999999999999 9999999999999999999999999999999987776
Q ss_pred cCCC----CC--C-----------------CccccccccChhHHHHHHHHHHHhccc
Q psy2895 241 QYLM----PS--R-----------------LHLPVHRYLHPKFFEKFKKIAYKLGFK 274 (293)
Q Consensus 241 ~~~~----p~--~-----------------~~~a~~r~~~p~~~~~~~~~~~~~G~~ 274 (293)
+|++ |. + +++|++|+++++ +.+++.+|..+|.+
T Consensus 257 ~fIp~~f~~~~t~l~~~~~~~~~~~~~~~lr~~AvaRl~l~n-~~~iqa~w~~~G~~ 312 (370)
T PRK05926 257 NFILLKFASENNALGKRLRKMGSRHSIPPASIIAVARLFLDN-FPNIKALWNYLGIE 312 (370)
T ss_pred eeEecccCCCCCcccccccccCCCChHHHHHHHHHHHHhcCC-CcccccCchhcCHH
Confidence 6654 21 0 377888988876 67777777666644
No 15
>PRK15108 biotin synthase; Provisional
Probab=99.98 E-value=2.5e-31 Score=241.54 Aligned_cols=225 Identities=16% Similarity=0.294 Sum_probs=181.1
Q ss_pred hcHHHHHHHHHhcCchhhhhhcCCCCccc-cccCce-eE--eeee-CcccCCCCcCcccCCCC----C--CCCChhHHHH
Q psy2895 27 DNFNKTKNILRANNLVTVCEEASCPNIGE-CFGRGV-AT--FMIM-GSICTRRCKFCNISHGR----P--DPLDIEEPKK 95 (293)
Q Consensus 27 ~~~~~~~~l~~~~~~~~l~~~a~~~~~~~-~~~~~~-~~--~~~~-t~~C~~~C~fC~~~~~~----~--~~~~~eei~~ 95 (293)
-+.++++.|+.. ++.+++..|+ .+++ +|+++. .. .+.+ |++|+.+|.||+++..+ + ..+++|||++
T Consensus 7 l~~~e~~~l~~~-~l~~l~~~A~--~ir~~~fg~~~v~l~~i~~~~Tn~C~~~C~yC~~~~~~~~~~~~~~~ls~eEI~~ 83 (345)
T PRK15108 7 WTLSQVTELFEK-PLLELLFEAQ--QVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLE 83 (345)
T ss_pred CCHHHHHHHHcc-cHHHHHHHHH--HHHHHhcCCCEEEEEEeEEEECCCcCCCCcCCCCcccCCCCCCcccCCCHHHHHH
Confidence 457888888854 7888888888 7754 677553 22 2333 99999999999998532 1 3489999999
Q ss_pred HHHHHHHCCCcEEEEeeec-CCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeeecccc
Q psy2895 96 IAYTINKLKLNYVVITSVN-RDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNHNIET 174 (293)
Q Consensus 96 ~~~~~~~~G~~~i~l~gg~-~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~les 174 (293)
.++.+.+.|++++.++++. .+ +..+.+++.++++.|++. ++.+. .+.+.++ .+.+++|+++|+|++++++||
T Consensus 84 ~a~~~~~~G~~~i~i~~~g~~p--~~~~~e~i~~~i~~ik~~--~i~v~-~s~G~ls--~e~l~~LkeAGld~~n~~leT 156 (345)
T PRK15108 84 SARKAKAAGSTRFCMGAAWKNP--HERDMPYLEQMVQGVKAM--GLETC-MTLGTLS--ESQAQRLANAGLDYYNHNLDT 156 (345)
T ss_pred HHHHHHHcCCCEEEEEecCCCC--CcchHHHHHHHHHHHHhC--CCEEE-EeCCcCC--HHHHHHHHHcCCCEEeecccc
Confidence 9999999999999885552 22 233478999999999975 23332 2346676 899999999999999999999
Q ss_pred chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhC--CCCEEEeecCCCCCC-----
Q psy2895 175 VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNH--NIDILTIGQYLMPSR----- 247 (293)
Q Consensus 175 s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l--~~~~i~i~~~~~p~~----- 247 (293)
+++.|.++++++++++++++++.++++ |+.+++++|+|+|||.+|+.+++..++++ ++++++++ ++.|.+
T Consensus 157 ~p~~f~~I~~~~~~~~rl~~i~~a~~~--G~~v~sg~i~GlgEt~ed~v~~~~~l~~l~~~~~~ip~~-~~~P~~gTpl~ 233 (345)
T PRK15108 157 SPEFYGNIITTRTYQERLDTLEKVRDA--GIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPIN-MLVKVKGTPLA 233 (345)
T ss_pred ChHhcCCCCCCCCHHHHHHHHHHHHHc--CCceeeEEEEeCCCCHHHHHHHHHHHHhccCCCCEEEeC-CccCCCCCCCC
Confidence 999999999889999999999999999 99999999999999999999999999999 66899997 665532
Q ss_pred -----------CccccccccChhHHHHH
Q psy2895 248 -----------LHLPVHRYLHPKFFEKF 264 (293)
Q Consensus 248 -----------~~~a~~r~~~p~~~~~~ 264 (293)
+++|++|+++|+...++
T Consensus 234 ~~~~~~~~e~lr~iAi~Rl~lp~~~i~i 261 (345)
T PRK15108 234 DNDDVDAFDFIRTIAVARIMMPTSYVRL 261 (345)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCceeee
Confidence 67788899888854433
No 16
>PRK05927 hypothetical protein; Provisional
Probab=99.97 E-value=3.6e-32 Score=246.72 Aligned_cols=201 Identities=15% Similarity=0.194 Sum_probs=170.2
Q ss_pred hcHHHHHHHHHhcCchhhhhhcCCCCccccc-cCceeEee-----eeCcccCCCCcCcccCCCCC----CCCChhHHHHH
Q psy2895 27 DNFNKTKNILRANNLVTVCEEASCPNIGECF-GRGVATFM-----IMGSICTRRCKFCNISHGRP----DPLDIEEPKKI 96 (293)
Q Consensus 27 ~~~~~~~~l~~~~~~~~l~~~a~~~~~~~~~-~~~~~~~~-----~~t~~C~~~C~fC~~~~~~~----~~~~~eei~~~ 96 (293)
-+.+++..|+...++..|+..|+ .+|+++ +++.++|+ .+||.|+.+|.||+|+.... ..+++|+|++.
T Consensus 7 is~ee~l~L~~~~~l~~L~~~A~--~iR~~~~~G~~V~~i~n~~i~~Tn~C~~~C~fCaf~~~~~~~~~y~ls~eei~~~ 84 (350)
T PRK05927 7 ISFQEGLELFLYSPLEELQEHAD--SLRKQRYPQNTVTYVLDANPNYTNICKIDCTFCAFYRKPHSSDAYLLSFDEFRSL 84 (350)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHH--HHHHHHcCCCeEEEEcccCCccchhhhcCCccCCccCCCCCccccccCHHHHHHH
Confidence 56788888987678888999998 888765 45544443 34999999999999987431 26899999999
Q ss_pred HHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcC----------CCcCcHHHHHHHHHHcCCC
Q psy2895 97 AYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIP----------DFRNQINHVLKIFKQALPD 166 (293)
Q Consensus 97 ~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~----------~~~~~~~e~l~~l~~aG~~ 166 (293)
++++.+.|++++.++||..|+ .+.+++.++++.|++.+|++.++.+++ |+.. +|.+++|++||++
T Consensus 85 a~~~~~~G~~~i~i~gG~~p~---~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G~~~--~e~l~~Lk~aGl~ 159 (350)
T PRK05927 85 MQRYVSAGVKTVLLQGGVHPQ---LGIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSGIST--EQALERLWDAGQR 159 (350)
T ss_pred HHHHHHCCCCEEEEeCCCCCC---CCHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcCCCH--HHHHHHHHHcCcc
Confidence 999999999999999998754 358999999999999888777766553 3333 8999999999999
Q ss_pred eeee-cccc-chHHHhhcCCCC-CHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCE
Q psy2895 167 VLNH-NIET-VPRLYKKVRPGS-DYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDI 236 (293)
Q Consensus 167 ~i~~-~les-s~~~~~~i~~~~-~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~ 236 (293)
++++ ++|+ ++++++.+++++ +.++|+++++.++++ |+++++++|+|+|||.+|+.+++..|++++.+.
T Consensus 160 ~l~g~~~Et~~~~~~~~~~p~k~~~~~rl~~i~~A~~l--Gi~~~sg~l~G~gEt~e~ri~~l~~Lr~lqd~~ 230 (350)
T PRK05927 160 TIPGGGAEILSERVRKIISPKKMGPDGWIQFHKLAHRL--GFRSTATMMFGHVESPEDILLHLQTLRDAQDEN 230 (350)
T ss_pred cCCCCCchhCCHHHhhccCCCCCCHHHHHHHHHHHHHc--CCCcCceeEEeeCCCHHHHHHHHHHHHHhhHhh
Confidence 9998 8999 578888888755 689999999999999 999999999999999999999999999999543
No 17
>PLN02389 biotin synthase
Probab=99.97 E-value=9.7e-31 Score=239.32 Aligned_cols=227 Identities=17% Similarity=0.298 Sum_probs=180.3
Q ss_pred hcHHHHHHHHHhcCchhhhhhcCCCCccc-cccC-ceeEeee--e-CcccCCCCcCcccCCCC----C--CCCChhHHHH
Q psy2895 27 DNFNKTKNILRANNLVTVCEEASCPNIGE-CFGR-GVATFMI--M-GSICTRRCKFCNISHGR----P--DPLDIEEPKK 95 (293)
Q Consensus 27 ~~~~~~~~l~~~~~~~~l~~~a~~~~~~~-~~~~-~~~~~~~--~-t~~C~~~C~fC~~~~~~----~--~~~~~eei~~ 95 (293)
-+.+++..|+.. ++.++...|+ .+++ ++++ .+.+..+ + |++|+.+|.||+++... + ..+++|+|++
T Consensus 47 lt~~e~l~L~~~-~l~~l~~~A~--~vr~~~~~~~~v~~~~i~n~~T~~C~~~C~fCaqs~~~~~~~~~~~~Ls~EeIl~ 123 (379)
T PLN02389 47 WTRDEIKEVYDS-PLLDLLFHGA--QVHRHAHDPREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKAQKLMSKDDVLE 123 (379)
T ss_pred CCHHHHHHHHcC-cHHHHHHHHH--HHHHHhcCCCEEEEEEEEEeccCCcCcCCCCCCCcccCCCCCcccccCCHHHHHH
Confidence 567889888854 7778888887 7776 4545 3544332 3 79999999999997632 1 3589999999
Q ss_pred HHHHHHHCCCcEEEEeeecCCCC-CCCChhHHHHHHHHHHhhCCCcEEEEEc-CCCcCcHHHHHHHHHHcCCCeeeeccc
Q psy2895 96 IAYTINKLKLNYVVITSVNRDDL-HDGGSSHFVSCIKHIRKLSTKIKIEILI-PDFRNQINHVLKIFKQALPDVLNHNIE 173 (293)
Q Consensus 96 ~~~~~~~~G~~~i~l~gg~~~~l-~~~~~~~~~~ll~~i~~~~~~~~i~~~~-~~~~~~~~e~l~~l~~aG~~~i~~~le 173 (293)
.++++.+.|++++.++.+..... .+...+++.++++.+++.. +.++. .|+.+ +|.+++|++||++++++++|
T Consensus 124 ~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~----l~i~~s~G~l~--~E~l~~LkeAGld~~~~~Le 197 (379)
T PLN02389 124 AAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMG----MEVCCTLGMLE--KEQAAQLKEAGLTAYNHNLD 197 (379)
T ss_pred HHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCC----cEEEECCCCCC--HHHHHHHHHcCCCEEEeeec
Confidence 99999999999987752211001 1123688999999998642 33443 47777 89999999999999999999
Q ss_pred cchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhC--CCCEEEeecCCCCCC----
Q psy2895 174 TVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNH--NIDILTIGQYLMPSR---- 247 (293)
Q Consensus 174 ss~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l--~~~~i~i~~~~~p~~---- 247 (293)
++++.|+++++++++++++++++.++++ |+.+++++|+|+|||.+|+.+++.+++++ +++.++++ ++.|.+
T Consensus 198 Ts~~~y~~i~~~~s~e~rl~ti~~a~~~--Gi~v~sg~IiGlgEt~edrv~~l~~Lr~L~~~~~~v~l~-~l~P~~GTpL 274 (379)
T PLN02389 198 TSREYYPNVITTRSYDDRLETLEAVREA--GISVCSGGIIGLGEAEEDRVGLLHTLATLPEHPESVPIN-ALVAVKGTPL 274 (379)
T ss_pred CChHHhCCcCCCCCHHHHHHHHHHHHHc--CCeEeEEEEECCCCCHHHHHHHHHHHHhcccCCcEEecc-cceecCCCcC
Confidence 9888999999888999999999999999 99999999999999999999999999999 68899997 555543
Q ss_pred ------------CccccccccChhHHHHHH
Q psy2895 248 ------------LHLPVHRYLHPKFFEKFK 265 (293)
Q Consensus 248 ------------~~~a~~r~~~p~~~~~~~ 265 (293)
+++|++|+++|+...++.
T Consensus 275 ~~~~~~s~~e~lr~iAi~Rl~lP~~~i~i~ 304 (379)
T PLN02389 275 EDQKPVEIWEMVRMIATARIVMPKAMVRLS 304 (379)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCcccccc
Confidence 677888988887755443
No 18
>PRK08508 biotin synthase; Provisional
Probab=99.97 E-value=4.5e-30 Score=227.35 Aligned_cols=185 Identities=19% Similarity=0.232 Sum_probs=157.8
Q ss_pred CcccCCCCcCcccCCCC----C--CCCChhHHHHHHHHHHHCCCcEEEEe-eecCCCCCCCChhHHHHHHHHHHhhCCCc
Q psy2895 68 GSICTRRCKFCNISHGR----P--DPLDIEEPKKIAYTINKLKLNYVVIT-SVNRDDLHDGGSSHFVSCIKHIRKLSTKI 140 (293)
Q Consensus 68 t~~C~~~C~fC~~~~~~----~--~~~~~eei~~~~~~~~~~G~~~i~l~-gg~~~~l~~~~~~~~~~ll~~i~~~~~~~ 140 (293)
|++|+.+|.||+++... . +.+++|+|++.++++.+.|++++.++ +|.. +.+...+++.++++.|++.+|++
T Consensus 14 s~gC~~~C~FCa~~~~~~~~~~~y~~~s~eeI~~~a~~a~~~g~~~~~lv~sg~~--~~~~~~e~~~ei~~~ik~~~p~l 91 (279)
T PRK08508 14 SGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKANGALGFCLVTSGRG--LDDKKLEYVAEAAKAVKKEVPGL 91 (279)
T ss_pred cCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEeccCC--CCcccHHHHHHHHHHHHhhCCCc
Confidence 69999999999997621 1 24799999999999999999988774 5543 22335789999999999887755
Q ss_pred EEEEEcCCCcCcHHHHHHHHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHH
Q psy2895 141 KIEILIPDFRNQINHVLKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDE 220 (293)
Q Consensus 141 ~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~e 220 (293)
.+..+ .+..+ +|.+++|++||++++++++|+++++|+++++++++++++++++.++++ |+.+++++|+|+|||.+
T Consensus 92 ~i~~s-~G~~~--~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~sg~I~GlGEt~e 166 (279)
T PRK08508 92 HLIAC-NGTAS--VEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEA--GLGLCSGGIFGLGESWE 166 (279)
T ss_pred EEEec-CCCCC--HHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHc--CCeecceeEEecCCCHH
Confidence 44333 36666 899999999999999999999889999999889999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHhCCCCEEEeecCCCCCC---------------CccccccccChhH
Q psy2895 221 EILTVIHDMRNHNIDILTIGQYLMPSR---------------LHLPVHRYLHPKF 260 (293)
Q Consensus 221 d~~~~l~~l~~l~~~~i~i~~~~~p~~---------------~~~a~~r~~~p~~ 260 (293)
|+.+++.+++++++++++++ ++.|.+ +++|++|+++|+.
T Consensus 167 d~~~~l~~lr~L~~~svpl~-~~~p~~~t~~~~~~~~~~~~lr~iAv~Rl~lp~~ 220 (279)
T PRK08508 167 DRISFLKSLASLSPHSTPIN-FFIPNPALPLKAPTLSADEALEIVRLAKEALPNA 220 (279)
T ss_pred HHHHHHHHHHcCCCCEEeeC-CcCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCc
Confidence 99999999999999999997 777754 4677788887765
No 19
>PRK07094 biotin synthase; Provisional
Probab=99.97 E-value=4.7e-30 Score=232.51 Aligned_cols=207 Identities=23% Similarity=0.380 Sum_probs=170.2
Q ss_pred HHHHHHHHHhcCc---hhhhhhcCCCCcccc-ccCceeE--eeeeCcccCCCCcCcccCCCCC---C-CCChhHHHHHHH
Q psy2895 29 FNKTKNILRANNL---VTVCEEASCPNIGEC-FGRGVAT--FMIMGSICTRRCKFCNISHGRP---D-PLDIEEPKKIAY 98 (293)
Q Consensus 29 ~~~~~~l~~~~~~---~~l~~~a~~~~~~~~-~~~~~~~--~~~~t~~C~~~C~fC~~~~~~~---~-~~~~eei~~~~~ 98 (293)
.+++..|++..+. .+|+..|+ .++.. +++.+.. .+.+|++|+++|.||+++.... + .+++++++++++
T Consensus 3 ~~e~~~ll~~~~~~~~~~L~~~A~--~~r~~~~g~~v~~~~~i~~s~gC~~~C~fC~~~~~~~~~~r~~ls~eei~~~~~ 80 (323)
T PRK07094 3 RDEILELLSNDDEEELKYLFKAAD--EVRKKYVGDEVHLRGLIEFSNYCRNNCLYCGLRRDNKNIERYRLSPEEILECAK 80 (323)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHH--HHHHHhCCCEEEEEEEEEECCCCCCCCEeCCcccCCCCCcCcCCCHHHHHHHHH
Confidence 5677888865433 24788888 77764 4544433 4567999999999999976432 2 369999999999
Q ss_pred HHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeeecccc-chH
Q psy2895 99 TINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNHNIET-VPR 177 (293)
Q Consensus 99 ~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~ 177 (293)
.+.+.|++.++|+||+.+.+ ..+++.++++.|++. +++.+++.. +..+ ++.++.|+++|++++.+++|| +++
T Consensus 81 ~~~~~g~~~i~l~gG~~~~~---~~~~l~~l~~~i~~~-~~l~i~~~~-g~~~--~e~l~~Lk~aG~~~v~~glEs~~~~ 153 (323)
T PRK07094 81 KAYELGYRTIVLQSGEDPYY---TDEKIADIIKEIKKE-LDVAITLSL-GERS--YEEYKAWKEAGADRYLLRHETADKE 153 (323)
T ss_pred HHHHCCCCEEEEecCCCCCC---CHHHHHHHHHHHHcc-CCceEEEec-CCCC--HHHHHHHHHcCCCEEEeccccCCHH
Confidence 99999999999999975433 357899999999986 455555432 4455 889999999999999999999 799
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHHHHHhCCCCEEEeecCCCCCC
Q psy2895 178 LYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHDMRNHNIDILTIGQYLMPSR 247 (293)
Q Consensus 178 ~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~ 247 (293)
+++.+++++++++++++++.++++ |+.+++++|+|+ |||.+|+.++++++++++++.++++++ .|.+
T Consensus 154 ~~~~i~~~~s~~~~~~~i~~l~~~--Gi~v~~~~iiGlpget~ed~~~~l~~l~~l~~~~v~~~~~-~P~p 221 (323)
T PRK07094 154 LYAKLHPGMSFENRIACLKDLKEL--GYEVGSGFMVGLPGQTLEDLADDILFLKELDLDMIGIGPF-IPHP 221 (323)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHc--CCeecceEEEECCCCCHHHHHHHHHHHHhCCCCeeeeecc-ccCC
Confidence 999999999999999999999999 999999999999 999999999999999999999999844 4543
No 20
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.97 E-value=2.4e-30 Score=237.57 Aligned_cols=241 Identities=17% Similarity=0.276 Sum_probs=190.9
Q ss_pred hcHHHHHHHHHh---cCchhhhhhcCCCCccc-cccCceeEee--eeCcccCCCCcCcccCCCC---CCCCChhHHHHHH
Q psy2895 27 DNFNKTKNILRA---NNLVTVCEEASCPNIGE-CFGRGVATFM--IMGSICTRRCKFCNISHGR---PDPLDIEEPKKIA 97 (293)
Q Consensus 27 ~~~~~~~~l~~~---~~~~~l~~~a~~~~~~~-~~~~~~~~~~--~~t~~C~~~C~fC~~~~~~---~~~~~~eei~~~~ 97 (293)
-+.+++..|+.. .++..|+..|+ .+++ .||+.+.+++ .+|++|+.+|.||+++..+ ...+++|||.+.+
T Consensus 36 ls~ee~~~Ll~~~~~~~l~~L~~~A~--~ir~~~~G~~v~l~~~in~Tn~C~~~C~YC~f~~~~~~~~~~ls~eEI~~~a 113 (371)
T PRK09240 36 LSLEDLMALLSPAAEPYLEEMAQKAQ--RLTRQRFGNTISLYTPLYLSNYCANDCTYCGFSMSNKIKRKTLDEEEIEREM 113 (371)
T ss_pred CCHHHHHHHhCCCChhHHHHHHHHHH--HHHHHHcCCEEEEEeceEEcccccCcCCcCCCCCCCCCccccCCHHHHHHHH
Confidence 667888888853 34667888888 7776 4666665443 3599999999999998642 2468999999999
Q ss_pred HHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeeecccc-ch
Q psy2895 98 YTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNHNIET-VP 176 (293)
Q Consensus 98 ~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~les-s~ 176 (293)
+.+.+.|++++.++||+++. ..+.+++.++++.|++.+|++.+++ +.++ .+.++.|+++|++++++++|| ++
T Consensus 114 ~~~~~~Gv~~i~lvgGe~p~--~~~~e~l~~~i~~Ik~~~p~i~i~~---g~lt--~e~l~~Lk~aGv~r~~i~lET~~~ 186 (371)
T PRK09240 114 AAIKKLGFEHILLLTGEHEA--KVGVDYIRRALPIAREYFSSVSIEV---QPLS--EEEYAELVELGLDGVTVYQETYNP 186 (371)
T ss_pred HHHHhCCCCEEEEeeCCCCC--CCCHHHHHHHHHHHHHhCCCceecc---CCCC--HHHHHHHHHcCCCEEEEEEecCCH
Confidence 99999999999999998643 3457999999999998877655544 2344 788999999999999999999 79
Q ss_pred HHHhhcCC---CCCHHHHHHHHHHHHHhCCCce-eeEeEEeecCCCHHHHHHHHHHHHhCCCC------EEEeecCCCCC
Q psy2895 177 RLYKKVRP---GSDYKHSLNLLKNFKKLYPNIL-TKSGIMVGLGENDEEILTVIHDMRNHNID------ILTIGQYLMPS 246 (293)
Q Consensus 177 ~~~~~i~~---~~~~e~~l~~i~~~~~~~pgi~-~~~~~ivG~gEt~ed~~~~l~~l~~l~~~------~i~i~~~~~p~ 246 (293)
+.|+.+++ +|++++++++++.++++ |+. +++++|+|+||+.+|+.+++..+++|++. .|+++ ++.|.
T Consensus 187 ~~~~~i~~~g~~h~~~~rl~~i~~a~~a--G~~~v~~g~i~Glge~~~d~~~~a~~l~~L~~~~~~~~~sv~~~-~l~P~ 263 (371)
T PRK09240 187 ATYAKHHLRGPKRDFEYRLETPERAGRA--GIRKIGLGALLGLSDWRTDALMTALHLRYLQRKYWQAEYSISFP-RLRPC 263 (371)
T ss_pred HHHHHhCcCCCCCCHHHHHHHHHHHHHc--CCCeeceEEEecCCccHHHHHHHHHHHHHHHHhCCCCceeeecC-ccccC
Confidence 99999974 67999999999999999 995 99999999999999999999999999874 67875 66665
Q ss_pred C---------------CccccccccChhHH--------HHHHHHHHHhcccchhcc
Q psy2895 247 R---------------LHLPVHRYLHPKFF--------EKFKKIAYKLGFKNVLVG 279 (293)
Q Consensus 247 ~---------------~~~a~~r~~~p~~~--------~~~~~~~~~~G~~~~~~~ 279 (293)
+ ++++++|+++|+.. ..+++....+|...+..|
T Consensus 264 ~g~~~~~~~~~~~e~l~~ia~~Rl~lP~~~i~~s~g~~~~lrd~~~~~~~~~~~ag 319 (371)
T PRK09240 264 TGGIEPASIVSDKQLVQLICAFRLFLPDVEISLSTRESPEFRDNLIPLGITKMSAG 319 (371)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcccccEEecCCCHHHHHHHHhhcceeeccC
Confidence 3 56667788887653 234444333555554433
No 21
>PRK07360 FO synthase subunit 2; Reviewed
Probab=99.97 E-value=6.1e-31 Score=241.64 Aligned_cols=227 Identities=18% Similarity=0.216 Sum_probs=180.9
Q ss_pred hhcHHHHHHHHHhcC---chhhhhhcCCCCccccccC-ceeEe----eeeCcccCCCCcCcccCCCCC----CCCChhHH
Q psy2895 26 IDNFNKTKNILRANN---LVTVCEEASCPNIGECFGR-GVATF----MIMGSICTRRCKFCNISHGRP----DPLDIEEP 93 (293)
Q Consensus 26 ~~~~~~~~~l~~~~~---~~~l~~~a~~~~~~~~~~~-~~~~~----~~~t~~C~~~C~fC~~~~~~~----~~~~~eei 93 (293)
.-+.+++..|+...+ +..|+..|+ .+++++.+ .+.++ +.+||.|+.+|.||+++.... ..++.|+|
T Consensus 19 ~ls~~e~~~Ll~~~~~~~l~~L~~~A~--~ir~~~~G~~v~~~~~~~i~~Tn~C~~~C~fC~~~~~~~~~~~y~ls~eeI 96 (371)
T PRK07360 19 DLSKEDALELLETTEPRRIFEILELAD--RLRKEQVGDTVTYVVNRNINFTNICEGHCGFCAFRRDEGDHGAFWLTIAEI 96 (371)
T ss_pred CCCHHHHHHHhcCCChHHHHHHHHHHH--HHHHHhcCCeEEEEeccCcccchhhhcCCccCCcccCCCCCCCeeCCHHHH
Confidence 366788888886544 677888898 88875444 44332 345999999999999987521 25899999
Q ss_pred HHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcC----------CCcCcHHHHHHHHHHc
Q psy2895 94 KKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIP----------DFRNQINHVLKIFKQA 163 (293)
Q Consensus 94 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~----------~~~~~~~e~l~~l~~a 163 (293)
++.++++.+.|++++.++||..|+.. ..+++.++++.|++.+|++.+..+++ +... ++.+++|++|
T Consensus 97 ~~~a~~a~~~G~~~i~l~~G~~p~~~--~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~~~--~e~l~~LkeA 172 (371)
T PRK07360 97 LEKAAEAVKRGATEVCIQGGLHPAAD--SLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGLSY--EEVLKALKDA 172 (371)
T ss_pred HHHHHHHHhCCCCEEEEccCCCCCCC--cHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCCCH--HHHHHHHHHc
Confidence 99999999999999999999765432 36899999999999877777776532 4444 7899999999
Q ss_pred CCCeeee-cccc-chHHHhhcCCCC-CHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCE----
Q psy2895 164 LPDVLNH-NIET-VPRLYKKVRPGS-DYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDI---- 236 (293)
Q Consensus 164 G~~~i~~-~les-s~~~~~~i~~~~-~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~---- 236 (293)
|+++++. +.+. .+++++.+++++ +.++|+++++.++++ |+.+++++|+|+|||.+|+.+++.+++++++++
T Consensus 173 Gld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~--Gl~~~sg~i~G~gEt~edrv~~l~~lr~l~~~~~g~~ 250 (371)
T PRK07360 173 GLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKL--GLPTTSTMMYGHVETPEHRIDHLLILREIQQETGGIT 250 (371)
T ss_pred CCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHc--CCCceeeEEeeCCCCHHHHHHHHHHHHHhchhhCCee
Confidence 9999974 3444 478888888865 999999999999999 999999999999999999999999999999876
Q ss_pred --EEeecCCCC---C---------------CCccccccccChhHH
Q psy2895 237 --LTIGQYLMP---S---------------RLHLPVHRYLHPKFF 261 (293)
Q Consensus 237 --i~i~~~~~p---~---------------~~~~a~~r~~~p~~~ 261 (293)
|+++ |++| . .+++|++|+++|+..
T Consensus 251 ~fIp~~-f~~~~Tpl~~~~~~~~~~~~~~~lr~iAi~Rl~lp~~~ 294 (371)
T PRK07360 251 EFVPLP-FVHENAPLYERGRVKGGAPGLEDLLLYAVSRIFLGNWI 294 (371)
T ss_pred EEEecc-ccCCCCccccccccCCCCCHHHHHHHHHHHHHhcCCCC
Confidence 5553 5442 1 057778888888743
No 22
>PRK06256 biotin synthase; Validated
Probab=99.97 E-value=1e-29 Score=231.41 Aligned_cols=222 Identities=22% Similarity=0.309 Sum_probs=177.4
Q ss_pred hcHHHHHHHHH--hcCchhhhhhcCCCCcccccc-CceeE--eee-eCcccCCCCcCcccCCCC------CCCCChhHHH
Q psy2895 27 DNFNKTKNILR--ANNLVTVCEEASCPNIGECFG-RGVAT--FMI-MGSICTRRCKFCNISHGR------PDPLDIEEPK 94 (293)
Q Consensus 27 ~~~~~~~~l~~--~~~~~~l~~~a~~~~~~~~~~-~~~~~--~~~-~t~~C~~~C~fC~~~~~~------~~~~~~eei~ 94 (293)
-+.+++..|++ ..++..|+..|+ .+++++. +.+.+ .+. .|++|+.+|.||+++... .+.+++|+|+
T Consensus 20 ~~~~e~~~ll~~~~~~~~~L~~~A~--~~r~~~~g~~v~~~~i~~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~ 97 (336)
T PRK06256 20 LTKEEALALLEIPDDDLLELLAAAY--EVRKHFCGKKVKLNTIINAKSGLCPEDCGYCSQSAGSSAPVYRYAWLDIEELI 97 (336)
T ss_pred CCHHHHHHHHcCChHHHHHHHHHHH--HHHHHhCCCeEEEEEeeeccCCCCCCCCccCCCcCCCCCCCceecCCCHHHHH
Confidence 67888888886 345677888888 7777554 44432 222 389999999999998632 1358999999
Q ss_pred HHHHHHHHCCCcEEEE-eeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEc-CCCcCcHHHHHHHHHHcCCCeeeecc
Q psy2895 95 KIAYTINKLKLNYVVI-TSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILI-PDFRNQINHVLKIFKQALPDVLNHNI 172 (293)
Q Consensus 95 ~~~~~~~~~G~~~i~l-~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~-~~~~~~~~e~l~~l~~aG~~~i~~~l 172 (293)
+.++.+.+.|++.+.+ +||..++ ....+++.++++.|++. ++ +++++ .+.++ ++.++.|+++|++++++++
T Consensus 98 ~~~~~~~~~g~~~~~l~~~g~~p~--~~~~~~~~e~i~~i~~~-~~--i~~~~~~g~l~--~e~l~~LkeaG~~~v~~~l 170 (336)
T PRK06256 98 EAAKEAIEEGAGTFCIVASGRGPS--GKEVDQVVEAVKAIKEE-TD--LEICACLGLLT--EEQAERLKEAGVDRYNHNL 170 (336)
T ss_pred HHHHHHHHCCCCEEEEEecCCCCC--chHHHHHHHHHHHHHhc-CC--CcEEecCCcCC--HHHHHHHHHhCCCEEecCC
Confidence 9999999999977655 4454332 22346899999999876 34 44433 36666 8999999999999999999
Q ss_pred ccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEeecCCCCCC-----
Q psy2895 173 ETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIGQYLMPSR----- 247 (293)
Q Consensus 173 ess~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~----- 247 (293)
||++++|+++++++++++++++++.++++ |+.+++++|+|+|||.+|+.+++.++++++++.++++ ++.|.+
T Consensus 171 Ets~~~~~~i~~~~t~~~~i~~i~~a~~~--Gi~v~~~~I~GlgEt~ed~~~~~~~l~~l~~~~v~i~-~l~P~pGT~l~ 247 (336)
T PRK06256 171 ETSRSYFPNVVTTHTYEDRIDTCEMVKAA--GIEPCSGGIIGMGESLEDRVEHAFFLKELDADSIPIN-FLNPIPGTPLE 247 (336)
T ss_pred ccCHHHHhhcCCCCCHHHHHHHHHHHHHc--CCeeccCeEEeCCCCHHHHHHHHHHHHhCCCCEEeec-ccccCCCCCCC
Confidence 99999999999999999999999999999 9999999999999999999999999999999999997 666644
Q ss_pred -----------CccccccccChhH
Q psy2895 248 -----------LHLPVHRYLHPKF 260 (293)
Q Consensus 248 -----------~~~a~~r~~~p~~ 260 (293)
+++++.|+++|+.
T Consensus 248 ~~~~~~~~e~l~~ia~~Rl~~p~~ 271 (336)
T PRK06256 248 NHPELTPLECLKTIAIFRLINPDK 271 (336)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCC
Confidence 4556667776654
No 23
>PRK09234 fbiC FO synthase; Reviewed
Probab=99.97 E-value=4.7e-30 Score=254.09 Aligned_cols=238 Identities=12% Similarity=0.215 Sum_probs=193.9
Q ss_pred hcHHHHHHHHH--hcCchhhhhhcCCCCccccccCceeEe-----eeeCcccCCCCcCcccCCCCC----CCCChhHHHH
Q psy2895 27 DNFNKTKNILR--ANNLVTVCEEASCPNIGECFGRGVATF-----MIMGSICTRRCKFCNISHGRP----DPLDIEEPKK 95 (293)
Q Consensus 27 ~~~~~~~~l~~--~~~~~~l~~~a~~~~~~~~~~~~~~~~-----~~~t~~C~~~C~fC~~~~~~~----~~~~~eei~~ 95 (293)
-+.++++.|+. ..++..|+..|+ .+|+++.++.++| +.+||.|+.+|.||+|+..+. ..+++|+|.+
T Consensus 487 ls~~eal~Ll~~~~~~l~~L~~~Ad--~iR~~~~G~~Vt~vvn~~In~TN~C~~~C~FCafs~~~~~~~~y~Ls~eeI~~ 564 (843)
T PRK09234 487 LTDDEALALFTADGPALEAVCRLAD--DLRRDVVGDDVTYVVNRNINFTNICYTGCRFCAFAQRKTDADAYTLSLDEVAD 564 (843)
T ss_pred CCHHHHHHHHcCCchhHHHHHHHHH--HHHHHhcCCeEEEEEeeceecCCCCCCCCcccccccCCCCCCcccCCHHHHHH
Confidence 56788888885 346778899998 8887555544433 234899999999999987431 3589999999
Q ss_pred HHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcC----------CCcCcHHHHHHHHHHcCC
Q psy2895 96 IAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIP----------DFRNQINHVLKIFKQALP 165 (293)
Q Consensus 96 ~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~----------~~~~~~~e~l~~l~~aG~ 165 (293)
.++++.+.|++++.++||..|++ +.+++.++++.||+.+|++.|+.++| ++.. .|.+++|++||+
T Consensus 565 ~a~ea~~~G~tev~i~gG~~p~~---~~~~y~~lir~IK~~~p~i~i~afsp~Ei~~~a~~~Gl~~--~e~l~~LkeAGL 639 (843)
T PRK09234 565 RAWEAWVAGATEVCMQGGIHPEL---PGTGYADLVRAVKARVPSMHVHAFSPMEIVNGAARLGLSI--REWLTALREAGL 639 (843)
T ss_pred HHHHHHHCCCCEEEEecCCCCCc---CHHHHHHHHHHHHHhCCCeeEEecChHHHHHHHHHcCCCH--HHHHHHHHHhCc
Confidence 99999999999999999987544 47899999999999999889988865 2323 899999999999
Q ss_pred Ceeeecc-cc-chHHHhhcCCCC-CHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCC------E
Q psy2895 166 DVLNHNI-ET-VPRLYKKVRPGS-DYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNID------I 236 (293)
Q Consensus 166 ~~i~~~l-es-s~~~~~~i~~~~-~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~------~ 236 (293)
++++++. |. ++++++.++|++ +.++|+++++.++++ |++++++||+|+|||.+|+.+++..+++++.+ +
T Consensus 640 ds~pgt~aeil~d~vr~~i~p~k~~~~~wle~i~~Ah~l--Gi~~~stmm~G~~Et~edrv~hl~~LreLq~~tgGf~~f 717 (843)
T PRK09234 640 DTIPGTAAEILDDEVRWVLTKGKLPTAEWIEVVTTAHEV--GLRSSSTMMYGHVDTPRHWVAHLRVLRDIQDRTGGFTEF 717 (843)
T ss_pred CccCCCchhhCCHHHHhhcCCCCCCHHHHHHHHHHHHHc--CCCcccceEEcCCCCHHHHHHHHHHHHhcCcccCCeeee
Confidence 9999744 45 588988899854 899999999999999 99999999999999999999999999999985 7
Q ss_pred EEeecCCCCCC------------------CccccccccChhHHHHHHHHHHHhccc
Q psy2895 237 LTIGQYLMPSR------------------LHLPVHRYLHPKFFEKFKKIAYKLGFK 274 (293)
Q Consensus 237 i~i~~~~~p~~------------------~~~a~~r~~~p~~~~~~~~~~~~~G~~ 274 (293)
|+++ |++|.. +++|++|+++|+.+.+++..|..+|..
T Consensus 718 IPl~-F~~~~tpl~l~~~~~~~~t~~e~Lr~iAvaRl~Lp~~i~~Iqa~wv~lg~~ 772 (843)
T PRK09234 718 VPLP-FVHQNAPLYLAGAARPGPTHRENRAVHALARIMLHGRIDNIQTSWVKLGVE 772 (843)
T ss_pred eecc-ccCCCCCcccccCCCCCCCHHHHHHHHHHHHHhCCCCcccccchhhhcCHH
Confidence 7774 665321 577899999987776776666565544
No 24
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=99.97 E-value=3.2e-30 Score=235.06 Aligned_cols=228 Identities=18% Similarity=0.262 Sum_probs=180.6
Q ss_pred cHHHHHHHHHhcCchhhhhhcCCCCcccccc-CceeEe-----eeeCcccCCCCcCcccCCCC--C--CCCChhHHHHHH
Q psy2895 28 NFNKTKNILRANNLVTVCEEASCPNIGECFG-RGVATF-----MIMGSICTRRCKFCNISHGR--P--DPLDIEEPKKIA 97 (293)
Q Consensus 28 ~~~~~~~l~~~~~~~~l~~~a~~~~~~~~~~-~~~~~~-----~~~t~~C~~~C~fC~~~~~~--~--~~~~~eei~~~~ 97 (293)
+.+++..|++..++..|+..|+ .+|+++. ++.++| +.+|++|+.+|.||+++... . ..+++|+|++.+
T Consensus 4 ~~~~~~~ll~~~~~~~l~~~A~--~vr~~~~~g~~v~~~~~~~i~~s~~C~~~C~fC~~~~~~~~~~~~~ls~eei~~~~ 81 (340)
T TIGR03699 4 SREEALELYKEADLLALGALAD--EVRRRRHPGNIVTFVVDRNINYTNICVVGCKFCAFYRAPGHPEGYVLSVEEILQKI 81 (340)
T ss_pred CHHHHHHHccCCcHHHHHHHHH--HHHHHhcCCCeEEEEeecccccchhhccCCccCCcccCCCCccccCCCHHHHHHHH
Confidence 4678888887667888999998 8887553 543332 23589999999999987532 1 358999999999
Q ss_pred HHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcC----------CCcCcHHHHHHHHHHcCCCe
Q psy2895 98 YTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIP----------DFRNQINHVLKIFKQALPDV 167 (293)
Q Consensus 98 ~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~----------~~~~~~~e~l~~l~~aG~~~ 167 (293)
+.+.+.|++++.++||..+.+ +.+++.++++.|++..|++.++.+++ ++.. ++.+++|++||+++
T Consensus 82 ~~~~~~G~~~i~l~gG~~p~~---~~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g~~~--~e~l~~Lk~aG~~~ 156 (340)
T TIGR03699 82 EELVAYGGTQILLQGGVNPDL---GLDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEGLSL--REVLERLKEAGLDS 156 (340)
T ss_pred HHHHHcCCcEEEEecCCCCCC---CHHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCCCCH--HHHHHHHHHcCCCc
Confidence 999999999999999876433 36889999999998876665543322 3333 78999999999999
Q ss_pred eee-cccc-chHHHhhcCCC-CCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCE------EE
Q psy2895 168 LNH-NIET-VPRLYKKVRPG-SDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDI------LT 238 (293)
Q Consensus 168 i~~-~les-s~~~~~~i~~~-~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~------i~ 238 (293)
+++ ++|+ ++++++.++++ .++++++++++.++++ |+.+++++|+|+|||.+|+.+++.++++++++. ++
T Consensus 157 ~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~--Gi~v~~~~iiGlgEt~ed~~~~l~~l~~l~~~~~~~~~fIP 234 (340)
T TIGR03699 157 IPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKL--GLPTTATMMFGHVETLEDRIEHLERIRELQDKTGGFTAFIP 234 (340)
T ss_pred CCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHc--CCCccceeEeeCCCCHHHHHHHHHHHHHhchhhCCeeEEEe
Confidence 985 7898 79999999864 5999999999999999 999999999999999999999999999999865 55
Q ss_pred eecCCCCC-C-------------CccccccccChhHHHHHHH
Q psy2895 239 IGQYLMPS-R-------------LHLPVHRYLHPKFFEKFKK 266 (293)
Q Consensus 239 i~~~~~p~-~-------------~~~a~~r~~~p~~~~~~~~ 266 (293)
++ |+++. + +++|++|+++|+ ..++..
T Consensus 235 ~~-f~p~~tpl~~~~~~~~~e~l~~iA~~Rl~lp~-~~~i~~ 274 (340)
T TIGR03699 235 WT-FQPGNTELGKKRPATSTEYLKVLAISRIFLDN-IPNIQA 274 (340)
T ss_pred ec-ccCCCCcccCCCCCCHHHHHHHHHHHHHcCCC-CCcccC
Confidence 54 54321 0 577788888876 444443
No 25
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.97 E-value=1.6e-28 Score=230.33 Aligned_cols=238 Identities=12% Similarity=0.238 Sum_probs=184.5
Q ss_pred cccCCCCceeEeccCChhcHHHHHHHHHhcCchh----hhhhcC--CCCccccccCceeEeeeeCcccCCCCcCcccCC-
Q psy2895 10 EILKKPNWIRVKLISNIDNFNKTKNILRANNLVT----VCEEAS--CPNIGECFGRGVATFMIMGSICTRRCKFCNISH- 82 (293)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~----l~~~a~--~~~~~~~~~~~~~~~~~~t~~C~~~C~fC~~~~- 82 (293)
++++..|.||.++ |+.++.++.+++....-.. +..... .........+....++.+++|||++|+||.++.
T Consensus 94 e~~~~~p~vd~v~--g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~isrGC~~~CsFC~ip~~ 171 (445)
T PRK14340 94 EMFSMFPVIDFLA--GPDTYRVLPGLIADAREGARPAALDFNQSETYAGIEPVRSGSISAFVPVMRGCNNMCAFCVVPFT 171 (445)
T ss_pred HHHhhCCCCcEEE--CCCCHHHHHHHHHHHhcCCcceeccccccccccccccccCCCcEEEEEeccCCCCCCCCCCcccc
Confidence 4556567899999 6688888888775421000 000000 000111112334567788999999999999986
Q ss_pred -CCCCCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCC-CChhHHHHHHHHHHhhCCCcEEEEEc--CCCcCcHHHHHH
Q psy2895 83 -GRPDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHD-GGSSHFVSCIKHIRKLSTKIKIEILI--PDFRNQINHVLK 158 (293)
Q Consensus 83 -~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~-~~~~~~~~ll~~i~~~~~~~~i~~~~--~~~~~~~~e~l~ 158 (293)
++.+.+++++|+++++.+.+.|+++|+|+|++...+.+ .....+.++++.+.+..+..++++.+ |..++ ++.++
T Consensus 172 rG~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~~~~l~~Ll~~l~~~~~~~rir~~~~~p~~l~--~ell~ 249 (445)
T PRK14340 172 RGRERSHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEAGADFAGLLDAVSRAAPEMRIRFTTSHPKDIS--ESLVR 249 (445)
T ss_pred cCCCcCCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCCCchHHHHHHHHhhcCCCcEEEEccCChhhcC--HHHHH
Confidence 34467899999999999999999999999998543321 11235888898887755556777754 54455 78999
Q ss_pred HHHHc--CCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHHHHHhCCC
Q psy2895 159 IFKQA--LPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHDMRNHNI 234 (293)
Q Consensus 159 ~l~~a--G~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~~l~~l~~ 234 (293)
.|+++ |+..+++++|| ++++++.|+|+++.+++.+.++.+++..||+.+.+++|+|+ |||++|+.+++++++++++
T Consensus 250 ~~~~~~~g~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~pgi~i~td~IvGfPgET~edf~~tl~~~~~~~~ 329 (445)
T PRK14340 250 TIAARPNICNHIHLPVQSGSSRMLRRMNRGHTIEEYLEKIALIRSAIPGVTLSTDLIAGFCGETEEDHRATLSLMEEVRF 329 (445)
T ss_pred HHHhCCCCCCeEEECCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEeccEEEECCCCCHHHHHHHHHHHHhcCC
Confidence 99886 79999999999 89999999999999999999999999999999999999999 9999999999999999999
Q ss_pred CEEEeecCCCCCCCcccc
Q psy2895 235 DILTIGQYLMPSRLHLPV 252 (293)
Q Consensus 235 ~~i~i~~~~~p~~~~~a~ 252 (293)
+.++++ .+.|.|++.+.
T Consensus 330 ~~~~~f-~~sp~pGT~~~ 346 (445)
T PRK14340 330 DSAFMF-YYSVRPGTLAA 346 (445)
T ss_pred CEEeeE-EecCCCCChhh
Confidence 999998 55788877653
No 26
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=99.97 E-value=1.9e-29 Score=231.36 Aligned_cols=241 Identities=20% Similarity=0.291 Sum_probs=190.6
Q ss_pred hcHHHHHHHHHhc---CchhhhhhcCCCCccc-cccCceeEee--eeCcccCCCCcCcccCCCC---CCCCChhHHHHHH
Q psy2895 27 DNFNKTKNILRAN---NLVTVCEEASCPNIGE-CFGRGVATFM--IMGSICTRRCKFCNISHGR---PDPLDIEEPKKIA 97 (293)
Q Consensus 27 ~~~~~~~~l~~~~---~~~~l~~~a~~~~~~~-~~~~~~~~~~--~~t~~C~~~C~fC~~~~~~---~~~~~~eei~~~~ 97 (293)
-+.+++..|+... ++..|+..|+ .++. ++++.+.++. .+|++|+++|.||+++... ...++.|+|.+.+
T Consensus 35 ls~~e~~~Ll~~~~~~~l~~L~~~A~--~ir~~~~G~~v~l~~~i~~Tn~C~~~C~yC~~s~~~~~~~~~Ls~eEI~~~a 112 (366)
T TIGR02351 35 LSLEDFLALLSPAAEPYLEEMAQKAK--KLTRKRFGNTISLFTPLYLSNYCSNKCVYCGFSMSNKIKRKKLNEEEIEREI 112 (366)
T ss_pred CCHHHHHHHhCCCchHHHHHHHHHHH--HHHHHHcCCEEEEEeeeeECccccCCCCcCCCCCCCCCccCcCCHHHHHHHH
Confidence 6678888887542 3667888888 7776 4566555443 3599999999999998642 2458999999999
Q ss_pred HHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeeecccc-ch
Q psy2895 98 YTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNHNIET-VP 176 (293)
Q Consensus 98 ~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~les-s~ 176 (293)
+.+.+.|++++.++||+++.. .+.+++.++++.|++.+|.+.+++. .++ .+.++.|+++|++++++++|| ++
T Consensus 113 ~~~~~~Gv~~i~lvgGe~p~~--~~~e~l~eii~~Ik~~~p~i~Iei~---~lt--~e~~~~Lk~aGv~r~~i~lET~~~ 185 (366)
T TIGR02351 113 EAIKKSGFKEILLVTGESEKA--AGVEYIAEAIKLAREYFSSLAIEVQ---PLN--EEEYKKLVEAGLDGVTVYQETYNE 185 (366)
T ss_pred HHHHhCCCCEEEEeeCCCCCC--CCHHHHHHHHHHHHHhCCccccccc---cCC--HHHHHHHHHcCCCEEEEEeecCCH
Confidence 999999999999998876532 3478999999999998876666653 245 788999999999999999999 69
Q ss_pred HHHhhcC---CCCCHHHHHHHHHHHHHhCCCce-eeEeEEeecCCCHHHHHHHHHHHHhCCC------CEEEeecCCCCC
Q psy2895 177 RLYKKVR---PGSDYKHSLNLLKNFKKLYPNIL-TKSGIMVGLGENDEEILTVIHDMRNHNI------DILTIGQYLMPS 246 (293)
Q Consensus 177 ~~~~~i~---~~~~~e~~l~~i~~~~~~~pgi~-~~~~~ivG~gEt~ed~~~~l~~l~~l~~------~~i~i~~~~~p~ 246 (293)
+.|+.|+ ++|++++++++++.++++ |+. +++++|+|+||+.+|..+++..++.|+. .+++++ ++.|.
T Consensus 186 ~~y~~i~~~g~~h~~~~rl~~i~~a~~a--G~~~v~~g~i~Gl~e~~~d~~~~a~~l~~L~~~~~~~~~sv~~~-~l~P~ 262 (366)
T TIGR02351 186 KKYKKHHLAGKKKDFRYRLNTPERAAKA--GMRKIGIGALLGLDDWRTDAFFTAYHLRYLQKKYWKTEISISVP-RLRPC 262 (366)
T ss_pred HHHHhcCcCCCCCCHHHHHHHHHHHHHc--CCCeeceeEEEeCchhHHHHHHHHHHHHHHHHHcCCCCcccccc-ccccC
Confidence 9999998 578999999999999999 997 8999999999999999999999988877 577875 66765
Q ss_pred C---------------CccccccccChhHH--------HHHHHHHHHhcccchhcc
Q psy2895 247 R---------------LHLPVHRYLHPKFF--------EKFKKIAYKLGFKNVLVG 279 (293)
Q Consensus 247 ~---------------~~~a~~r~~~p~~~--------~~~~~~~~~~G~~~~~~~ 279 (293)
+ ++++..|+++|+.. ..+++....+|...+..|
T Consensus 263 ~g~~~~~~~l~~~~~~~~i~~~R~~~P~~~i~~s~g~~~~lrd~~~~~~~~~~~a~ 318 (366)
T TIGR02351 263 TNGLKPKVIVTDRELVQIICAYRLFDPFVEISLSTRESKKFRDNVIPLGITKMSAG 318 (366)
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCcccccEEecCCCHHHHHHHHhhcceeeccC
Confidence 4 45666777777652 344444446665554433
No 27
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.97 E-value=4.3e-28 Score=227.58 Aligned_cols=233 Identities=15% Similarity=0.271 Sum_probs=179.6
Q ss_pred CCCCceeEeccCChhcHHHHHHHHHhcC----chhhhhhcC---CCCccccccCceeEeeeeCcccCCCCcCcccCC--C
Q psy2895 13 KKPNWIRVKLISNIDNFNKTKNILRANN----LVTVCEEAS---CPNIGECFGRGVATFMIMGSICTRRCKFCNISH--G 83 (293)
Q Consensus 13 ~~~~~~~~~~~~g~~~~~~~~~l~~~~~----~~~l~~~a~---~~~~~~~~~~~~~~~~~~t~~C~~~C~fC~~~~--~ 83 (293)
+.++ +|.++ |++..+.+.++++... ...+...+. .+.+.....+....++.++.|||++|+||..+. |
T Consensus 102 ~~~~-vD~vv--g~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~l~isrGC~~~CsFC~ip~~rG 178 (449)
T PRK14332 102 QELP-LDLVV--GPDNYRSLPELIQRIRNGEKSISLTRLSKIETYDEIEPRVVNGIQAFVTIMRGCNNFCTFCVVPYTRG 178 (449)
T ss_pred ccCC-ceEEE--CCCCHHHHHHHHHHHhcCCceeeecccccccccccccccccCCceEEEEecCCcCCCCCCCCcccccC
Confidence 3444 89888 4488888888875421 000000000 000111111234567778999999999999986 4
Q ss_pred CCCCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEc--CCCcCcHHHHHHHHH
Q psy2895 84 RPDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILI--PDFRNQINHVLKIFK 161 (293)
Q Consensus 84 ~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~--~~~~~~~~e~l~~l~ 161 (293)
+.+++++|+|+++++.+.+.|+++|+|+|.+...+.. ....+.++++.+.+.....++++.+ |..++ ++.++.++
T Consensus 179 ~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~-~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~--~ell~~m~ 255 (449)
T PRK14332 179 RERSRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKE-QSTDFAGLIQMLLDETTIERIRFTSPHPKDFP--DHLLSLMA 255 (449)
T ss_pred CcccCCHHHHHHHHHHHHHCCCeEEEEecccCCcccC-CcccHHHHHHHHhcCCCcceEEEECCCcccCC--HHHHHHHH
Confidence 4578999999999999999999999999988654422 2345888888876643233677755 44445 78999999
Q ss_pred HcC--CCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHHHHHhCCCCEE
Q psy2895 162 QAL--PDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHDMRNHNIDIL 237 (293)
Q Consensus 162 ~aG--~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~~l~~l~~~~i 237 (293)
++| +..+++++|| ++++++.|+|+++.+++.+.++.++++.||+.+.+++|+|+ |||++|+.++++++++++++.+
T Consensus 256 ~~~~~~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p~i~i~td~IvGfPgET~edf~~tl~~v~~l~~~~~ 335 (449)
T PRK14332 256 KNPRFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVPDVGITTDIIVGFPNETEEEFEDTLAVVREVQFDMA 335 (449)
T ss_pred hCCCccceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 988 8999999999 89999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred EeecCCCCCCCcccc
Q psy2895 238 TIGQYLMPSRLHLPV 252 (293)
Q Consensus 238 ~i~~~~~p~~~~~a~ 252 (293)
+++ .+.|.+++.|.
T Consensus 336 ~~f-~ys~~~GT~a~ 349 (449)
T PRK14332 336 FMF-KYSEREGTMAK 349 (449)
T ss_pred EEE-EecCCCCChhH
Confidence 998 55788888774
No 28
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.96 E-value=4.6e-28 Score=229.25 Aligned_cols=236 Identities=15% Similarity=0.251 Sum_probs=183.5
Q ss_pred cccCCCCceeEeccCChhcHHHHHHHHHhcCc-----hhhhhhcC--CCCccccccCceeEeeeeCcccCCCCcCcccCC
Q psy2895 10 EILKKPNWIRVKLISNIDNFNKTKNILRANNL-----VTVCEEAS--CPNIGECFGRGVATFMIMGSICTRRCKFCNISH 82 (293)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~-----~~l~~~a~--~~~~~~~~~~~~~~~~~~t~~C~~~C~fC~~~~ 82 (293)
.+++.-|+||.++ |+.++.++.+++...-. ........ .+.+.....++...++.++.|||++|+||.++.
T Consensus 156 ~~~~~~p~vd~v~--g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~a~v~I~~GC~~~CsFC~vp~ 233 (509)
T PRK14327 156 KILKKYQHVDMIF--GTHNIHRLPEILKEAYFSKEMVVEVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPY 233 (509)
T ss_pred HHHhcCCCCCEEE--CCCCHHHHHHHHHHHhcCCCceeeccccccccccccccccCCCeEEEEEecCCCCCCCcCCcccc
Confidence 4566778999999 66999999988854210 01100000 000000112346778889999999999999986
Q ss_pred --CCCCCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCC-C-C-hhHHHHHHHHHHhhCCCcEEEEEc--CCCcCcHHH
Q psy2895 83 --GRPDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHD-G-G-SSHFVSCIKHIRKLSTKIKIEILI--PDFRNQINH 155 (293)
Q Consensus 83 --~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~-~-~-~~~~~~ll~~i~~~~~~~~i~~~~--~~~~~~~~e 155 (293)
++.+.+++|+|+++++.+.+.|+++|+|+|.+...+.. . + ...+.+|++.|.+.. ..++++.+ |..++ ++
T Consensus 234 ~rG~~Rsr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll~~I~~~~-i~~ir~~s~~P~~i~--de 310 (509)
T PRK14327 234 TRGKERSRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLMDEIRKID-IPRVRFTTSHPRDFD--DH 310 (509)
T ss_pred cCCCCeeCCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHHHHHHhCC-CceEEEeecCcccCC--HH
Confidence 44467899999999999999999999999987543311 0 1 135788999887752 23566654 54455 89
Q ss_pred HHHHHHHcC--CCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHHHHHh
Q psy2895 156 VLKIFKQAL--PDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHDMRN 231 (293)
Q Consensus 156 ~l~~l~~aG--~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~~l~~ 231 (293)
.++.++++| +.++++++|| ++++++.|+|+++.+++++.++.++++.|++.+++++|+|| |||++|+.++++++++
T Consensus 311 li~~m~~~g~~~~~l~lgvQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~p~i~i~tdiIvGfPgET~edf~~Tl~~v~~ 390 (509)
T PRK14327 311 LIEVLAKGGNLVEHIHLPVQSGSTEVLKIMARKYTRESYLELVRKIKEAIPNVALTTDIIVGFPNETDEQFEETLSLYRE 390 (509)
T ss_pred HHHHHHhcCCccceEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCcEEeeeEEEeCCCCCHHHHHHHHHHHHH
Confidence 999999998 7799999999 89999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCEEEeecCCCCCCCccc
Q psy2895 232 HNIDILTIGQYLMPSRLHLP 251 (293)
Q Consensus 232 l~~~~i~i~~~~~p~~~~~a 251 (293)
++++.++++ .+.|.|++.+
T Consensus 391 l~~d~~~~f-~ysprpGT~a 409 (509)
T PRK14327 391 VGFDHAYTF-IYSPREGTPA 409 (509)
T ss_pred cCCCeEEEe-eeeCCCCCch
Confidence 999999998 5578887665
No 29
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.96 E-value=2.2e-27 Score=224.14 Aligned_cols=238 Identities=15% Similarity=0.261 Sum_probs=182.5
Q ss_pred cccCCCCceeEeccCChhcHHHHHHHHHhcCc----hhhh-hhc-CCCCc-ccc-ccCceeEeeeeCcccCCCCcCcccC
Q psy2895 10 EILKKPNWIRVKLISNIDNFNKTKNILRANNL----VTVC-EEA-SCPNI-GEC-FGRGVATFMIMGSICTRRCKFCNIS 81 (293)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~----~~l~-~~a-~~~~~-~~~-~~~~~~~~~~~t~~C~~~C~fC~~~ 81 (293)
.+++.++++|.++ |++....+.+++....- .... ... .+... ... ..++...++.++.|||++|+||+++
T Consensus 111 ~~l~~~~~vD~vv--~~e~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~isrGCp~~CsFC~ip 188 (467)
T PRK14329 111 KLLEEEKIVDLVV--GPDAYLDLPNLIAEVEEGRKAINVILSKEETYADISPVRLGGNGVSAFVSIMRGCDNMCTFCVVP 188 (467)
T ss_pred HHHhcCCCceEEE--CCCCHHHHHHHHHHHhcCCcceeccccccccccccccccccCCCcEEEEEeccCcccCCCCCccc
Confidence 4566778899888 44788888887754210 0000 000 00000 001 1233556778899999999999998
Q ss_pred C--CCCCCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCC-CC-C-----hhHHHHHHHHHHhhCCCcEEEEEc--CCCc
Q psy2895 82 H--GRPDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLH-DG-G-----SSHFVSCIKHIRKLSTKIKIEILI--PDFR 150 (293)
Q Consensus 82 ~--~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~-~~-~-----~~~~~~ll~~i~~~~~~~~i~~~~--~~~~ 150 (293)
. ++.+.+++++|+++++.+.+.|+++|+|+|.+..++. +. + ...+.++++.+.+..++.++++.+ |..+
T Consensus 189 ~~~G~~rsrs~e~Vv~Ei~~l~~~g~~eI~l~~~~~~~y~~d~~~~~~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~l 268 (467)
T PRK14329 189 FTRGRERSRDPESILNEVRDLFAKGYKEVTLLGQNVDSYLWYGGGLKKDEAVNFAQLLEMVAEAVPDMRIRFSTSHPKDM 268 (467)
T ss_pred cccCCcccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccCCccccccccHHHHHHHHHhcCCCcEEEEecCCcccC
Confidence 6 3446789999999999999999999999988744331 10 1 236889999888765556777754 4445
Q ss_pred CcHHHHHHHHHHc--CCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHH
Q psy2895 151 NQINHVLKIFKQA--LPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVI 226 (293)
Q Consensus 151 ~~~~e~l~~l~~a--G~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l 226 (293)
+ ++.++.|+++ |+.++++++|| ++++++.|+|+++.+++++.++.++++.|++.+++++|+|+ |||++|+.+++
T Consensus 269 ~--~ell~~m~~~~~g~~~i~iglQSgsd~vLk~m~R~~t~~~~~~~i~~ir~~~~~~~i~~d~IvGfPgET~edf~~tl 346 (467)
T PRK14329 269 T--DDVLEVMAKYDNICKHIHLPVQSGSDRILKLMNRKYTREWYLDRIDAIRRIIPDCGISTDMIAGFPTETEEDHQDTL 346 (467)
T ss_pred C--HHHHHHHHhCCCCCCeEEeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEeEEEeCCCCCHHHHHHHH
Confidence 5 7899999887 89999999999 89999999999999999999999999988999999999999 99999999999
Q ss_pred HHHHhCCCCEEEeecCCCCCCCcccc
Q psy2895 227 HDMRNHNIDILTIGQYLMPSRLHLPV 252 (293)
Q Consensus 227 ~~l~~l~~~~i~i~~~~~p~~~~~a~ 252 (293)
++++++++++++++ .+.|.|++.+.
T Consensus 347 ~~i~~l~~~~~~v~-~~sp~pGT~~~ 371 (467)
T PRK14329 347 SLMEEVGYDFAFMF-KYSERPGTYAA 371 (467)
T ss_pred HHHHhhCCCeEeee-EecCCCCChhh
Confidence 99999999999998 44688876653
No 30
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.96 E-value=1.4e-27 Score=222.69 Aligned_cols=238 Identities=15% Similarity=0.271 Sum_probs=182.3
Q ss_pred ccccCCCCceeEeccCChhcHHHHHHHHHhcCchhhhhhcCCCCc-cccc-cCceeEeeeeCcccCCCCcCcccCC--CC
Q psy2895 9 IEILKKPNWIRVKLISNIDNFNKTKNILRANNLVTVCEEASCPNI-GECF-GRGVATFMIMGSICTRRCKFCNISH--GR 84 (293)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~l~~~a~~~~~-~~~~-~~~~~~~~~~t~~C~~~C~fC~~~~--~~ 84 (293)
..+++..+.||.++ |+.++.++.+++................. ...+ .+++..++.+++|||++|+||.++. |+
T Consensus 75 ~~~~~~~~~vd~v~--g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~isrGC~~~CsFC~ip~~rG~ 152 (420)
T PRK14339 75 EEIIKRAPYVDFVL--GARNVSKISQVIHTPKAVEVDIDYDESTYAFADFRKSPYKSLVNISIGCDKKCTYCIVPHTRGK 152 (420)
T ss_pred HHHHhhCCCCcEEE--CCCCHHHHHHHHHhhcccceeccccccccccccccCCCeEEEEEecCCCCCCCCcCCcccccCC
Confidence 34566678899998 66889999888754210000000000000 0112 3446778889999999999999987 44
Q ss_pred CCCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCC-----CChhHHHHHHHHHHhhCCCcEEEEEc--CCCcCcHHHHH
Q psy2895 85 PDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHD-----GGSSHFVSCIKHIRKLSTKIKIEILI--PDFRNQINHVL 157 (293)
Q Consensus 85 ~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~-----~~~~~~~~ll~~i~~~~~~~~i~~~~--~~~~~~~~e~l 157 (293)
.+++++|+|+++++.+.+.|+++|+|+|.+...+.. .....+.++++.+.+.....++++.+ |...+ ++.+
T Consensus 153 ~~sr~~e~I~~Ei~~l~~~G~keI~l~~~~~~~yg~d~~~~~~~~~l~~Ll~~l~~~~g~~~ir~~s~~p~~~~--~ell 230 (420)
T PRK14339 153 EISIPMDLILKEAEKAVNNGAKEIFLLGQNVNNYGKRFSSEHEKVDFSDLLDKLSEIEGLERIRFTSPHPLHMD--DKFL 230 (420)
T ss_pred CCCCCHHHHHHHHHHHHHCCCcEEEEeeeccccccCCCcCCcccccHHHHHHHHhcCCCccEEEECCCChhhcC--HHHH
Confidence 456899999999999999999999999987533311 01135888888887632122577644 34455 8899
Q ss_pred HHHHHc--CCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHHHHHhCC
Q psy2895 158 KIFKQA--LPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHDMRNHN 233 (293)
Q Consensus 158 ~~l~~a--G~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~~l~~l~ 233 (293)
+.|+++ |+..+++++|| ++++++.|+|+++.+++++.++.++++.||+.+.+++|+|+ |||++|+.++++++++++
T Consensus 231 ~~~~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~~~~~~~v~~lr~~~p~i~i~~d~IvGfPgETeedf~~Tl~fl~~l~ 310 (420)
T PRK14339 231 EEFAKNPKICKSIHMPLQSGSSEILKAMKRGYTKEWFLNRAEKLRALVPEVSISTDIIVGFPGESDKDFEDTMDVLEKVR 310 (420)
T ss_pred HHHHcCCCccCceEeCCccCCHHHHHhccCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHhcC
Confidence 999987 58999999999 89999999999999999999999999999999999999999 999999999999999999
Q ss_pred CCEEEeecCCCCCCCccc
Q psy2895 234 IDILTIGQYLMPSRLHLP 251 (293)
Q Consensus 234 ~~~i~i~~~~~p~~~~~a 251 (293)
++.++++ .+.|.|++.+
T Consensus 311 ~~~~~~f-~~sp~pGT~a 327 (420)
T PRK14339 311 FEQIFSF-KYSPRPLTEA 327 (420)
T ss_pred CCEEeeE-ecCCCCCCch
Confidence 9999998 4578887765
No 31
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.96 E-value=4.1e-28 Score=226.54 Aligned_cols=244 Identities=18% Similarity=0.284 Sum_probs=194.1
Q ss_pred hcHHHHHHHHHhc---CchhhhhhcCCCCcccc-ccCceeEee--eeCcccCCCCcCcccCCCCC----CCCChhHHHHH
Q psy2895 27 DNFNKTKNILRAN---NLVTVCEEASCPNIGEC-FGRGVATFM--IMGSICTRRCKFCNISHGRP----DPLDIEEPKKI 96 (293)
Q Consensus 27 ~~~~~~~~l~~~~---~~~~l~~~a~~~~~~~~-~~~~~~~~~--~~t~~C~~~C~fC~~~~~~~----~~~~~eei~~~ 96 (293)
-+.+++..|+... .+..++..|+ .+++. ||+.+.++. .+||.|+++|.||+|+..+. ..+++|||.++
T Consensus 46 Ls~eEal~LL~~~~~~~le~L~~~A~--~ir~~~~Gn~I~lfapLyiSN~C~n~C~YCgfs~~n~~i~r~~Ls~EEI~~e 123 (469)
T PRK09613 46 LSPEEAAVLLNVEDPELLEEIFEAAR--EIKEKIYGNRIVLFAPLYISNYCVNNCVYCGFRRSNKEIKRKKLTQEEIREE 123 (469)
T ss_pred CCHHHHHHHHcCCChhHHHHHHHHHH--HHHHHHcCCEEEEEEeccccCCCCCCCccCCCccCCCCCCceECCHHHHHHH
Confidence 6678888888543 3566888888 77764 667666654 46999999999999987542 35899999999
Q ss_pred HHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCC---Cc-EEEEEcCCCcCcHHHHHHHHHHcCCCeeeecc
Q psy2895 97 AYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLST---KI-KIEILIPDFRNQINHVLKIFKQALPDVLNHNI 172 (293)
Q Consensus 97 ~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~---~~-~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~l 172 (293)
++.+.+.|++++.|++|+.+ +..+.+++.++++.|++..+ .+ .+.+.. +.++ .+.+++|+++|++++.+..
T Consensus 124 a~~~~~~G~~~i~LvsGe~p--~~~~~eyi~e~i~~I~~~~~~~g~i~~v~ini-g~lt--~eey~~LkeaGv~~~~l~q 198 (469)
T PRK09613 124 VKALEDMGHKRLALVAGEDP--PNCDIEYILESIKTIYSTKHGNGEIRRVNVNI-APTT--VENYKKLKEAGIGTYQLFQ 198 (469)
T ss_pred HHHHHHCCCCEEEEEeCCCC--CCCCHHHHHHHHHHHHHhccccCcceeeEEEe-ecCC--HHHHHHHHHcCCCEEEecc
Confidence 99999999999999888763 33458999999999997431 11 233322 3355 7899999999999999999
Q ss_pred cc-chHHHhhcCC---CCCHHHHHHHHHHHHHhCCCce-eeEeEEeecCCCHHHHHHHHHHHHhC------CCCEEEeec
Q psy2895 173 ET-VPRLYKKVRP---GSDYKHSLNLLKNFKKLYPNIL-TKSGIMVGLGENDEEILTVIHDMRNH------NIDILTIGQ 241 (293)
Q Consensus 173 es-s~~~~~~i~~---~~~~e~~l~~i~~~~~~~pgi~-~~~~~ivG~gEt~ed~~~~l~~l~~l------~~~~i~i~~ 241 (293)
|| .+++|+++++ +++++++++++++++++ |+. +++++|+|+|++.+|..+++..++.| |++.|++.
T Consensus 199 ETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~a--Gi~~Vg~G~L~GLge~~~E~~~l~~hl~~L~~~~gvgp~tIsvp- 275 (469)
T PRK09613 199 ETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEA--GIDDVGIGVLFGLYDYKFEVLGLLMHAEHLEERFGVGPHTISVP- 275 (469)
T ss_pred ccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHc--CCCeeCeEEEEcCCCCHHHHHHHHHHHHHHHHhhCCCCcccccc-
Confidence 99 7999999985 57999999999999999 997 99999999999999999999998887 67778884
Q ss_pred CCCCCC-----------------CccccccccChhH--------HHHHHHHHHHhcccchhccc
Q psy2895 242 YLMPSR-----------------LHLPVHRYLHPKF--------FEKFKKIAYKLGFKNVLVGS 280 (293)
Q Consensus 242 ~~~p~~-----------------~~~a~~r~~~p~~--------~~~~~~~~~~~G~~~~~~~~ 280 (293)
++.|.+ +++|+.|+++|.. -..+++.+..+|+.++..|+
T Consensus 276 rl~P~~Gtpl~~~~~~vsd~e~lriiA~~RL~~P~~~I~lStRE~~~~r~~~~~~gvt~~sags 339 (469)
T PRK09613 276 RLRPADGSDLENFPYLVSDEDFKKIVAILRLAVPYTGMILSTRESAELRREVLELGVSQISAGS 339 (469)
T ss_pred ceecCCCCCcccCCCCCCHHHHHHHHHHHHHHCCCCCceeecCCCHHHHHHHHhhcceeecccc
Confidence 666643 4666778877754 25678888889998887555
No 32
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=99.96 E-value=2.8e-28 Score=219.32 Aligned_cols=194 Identities=20% Similarity=0.279 Sum_probs=157.8
Q ss_pred eeeeCcccCCCCcCcccCCCCC----CCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCC
Q psy2895 64 FMIMGSICTRRCKFCNISHGRP----DPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTK 139 (293)
Q Consensus 64 ~~~~t~~C~~~C~fC~~~~~~~----~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~ 139 (293)
++.+|++|+.+|.||+++.... ..+++|+|++.++.+.+.|+++|.|+||+.+++ +.+++.++++.|++..|+
T Consensus 8 ~i~~T~~C~~~C~FC~~~~~~~~~~~~~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~~---~~~~~~~i~~~Ik~~~~~ 84 (309)
T TIGR00423 8 NINFTNICVGKCKFCAFRAREKDKDAYVLSLEEILEKVKEAVAKGATEVCIQGGLNPQL---DIEYYEELFRAIKQEFPD 84 (309)
T ss_pred eecCccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHHCCCCEEEEecCCCCCC---CHHHHHHHHHHHHHHCCC
Confidence 3456999999999999986432 368999999999999999999999998876433 368899999999998877
Q ss_pred cEEEEEcC----------CCcCcHHHHHHHHHHcCCCeee-ecccc-chHHHhhcCCCC-CHHHHHHHHHHHHHhCCCce
Q psy2895 140 IKIEILIP----------DFRNQINHVLKIFKQALPDVLN-HNIET-VPRLYKKVRPGS-DYKHSLNLLKNFKKLYPNIL 206 (293)
Q Consensus 140 ~~i~~~~~----------~~~~~~~e~l~~l~~aG~~~i~-~~les-s~~~~~~i~~~~-~~e~~l~~i~~~~~~~pgi~ 206 (293)
+.+..+++ +... +|.+++|++||+++++ .++|+ ++++++.+++++ +.++|+++++.++++ |+.
T Consensus 85 i~~~~~s~~e~~~~~~~~g~~~--~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~--Gi~ 160 (309)
T TIGR00423 85 VHIHAFSPMEVYFLAKNEGLSI--EEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRL--GIP 160 (309)
T ss_pred ceEEecCHHHHHHHHHHcCCCH--HHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHc--CCC
Confidence 77765543 2233 7899999999999997 59999 799999998754 999999999999999 999
Q ss_pred eeEeEEeecCCCHHHHHHHHHHHHhCCCC------EEEeecCCC---C-C-----C--------CccccccccChhHHHH
Q psy2895 207 TKSGIMVGLGENDEEILTVIHDMRNHNID------ILTIGQYLM---P-S-----R--------LHLPVHRYLHPKFFEK 263 (293)
Q Consensus 207 ~~~~~ivG~gEt~ed~~~~l~~l~~l~~~------~i~i~~~~~---p-~-----~--------~~~a~~r~~~p~~~~~ 263 (293)
+++++|+|+|||.+|+.+++..+++++++ ++++. |++ | . + +++|++|+++|+ +.+
T Consensus 161 ~~s~~iiG~~Et~ed~~~~l~~lr~l~~~~~~f~~fiP~~-f~~~~t~~l~~~~~~~~~~~e~lr~iA~~Rl~lp~-~~~ 238 (309)
T TIGR00423 161 TTATMMFGHVENPEHRVEHLLRIRKIQEKTGGFTEFIPLP-FQPENNPYLEGEVRKGASGIDDLKVIAISRILLNN-IRN 238 (309)
T ss_pred ceeeEEecCCCCHHHHHHHHHHHHhhchhhCCeeeEEeee-ecCCCChhhccCCCCCCCHHHHHHHHHHHHHhcCC-Ccc
Confidence 99999999999999999999999999986 45553 443 2 0 1 567778888773 444
Q ss_pred HHH
Q psy2895 264 FKK 266 (293)
Q Consensus 264 ~~~ 266 (293)
++.
T Consensus 239 i~a 241 (309)
T TIGR00423 239 IQA 241 (309)
T ss_pred cee
Confidence 443
No 33
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.96 E-value=7.3e-27 Score=217.83 Aligned_cols=225 Identities=16% Similarity=0.238 Sum_probs=177.1
Q ss_pred ccccCCCCceeEeccCChhcHHHHHHHHHhcCchhhhhhcCCCCccccccCceeEeeeeCcccCCCCcCcccCC--CCCC
Q psy2895 9 IEILKKPNWIRVKLISNIDNFNKTKNILRANNLVTVCEEASCPNIGECFGRGVATFMIMGSICTRRCKFCNISH--GRPD 86 (293)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~t~~C~~~C~fC~~~~--~~~~ 86 (293)
..|.+.-|++|.++ |+.+..++.+.+... .. + ..++...++.++.|||++|+||..+. ++.+
T Consensus 88 ~~l~~~~p~vd~v~--g~~~~~~~~~~~~~~--------~~-~-----~~~~~~a~i~i~rGC~~~CsFC~ip~~rG~~r 151 (418)
T PRK14336 88 SLIRKKFPFVDYIF--GPGSMPDWREIPEGF--------IL-P-----LKPPVSANVTIMQGCDNFCTYCVVPYRRGREK 151 (418)
T ss_pred HHHHhhCCCCcEEE--CCCCHHHHHHHHhhh--------cc-C-----CCCCeEEEEEeccCCCCCCccCCccccCCCCc
Confidence 34555677888888 445555555544210 00 1 01345677888999999999999986 4456
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCCCC-CC-ChhHHHHHHHHHHhhCCCcEEEEEc--CCCcCcHHHHHHHHHH
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDDLH-DG-GSSHFVSCIKHIRKLSTKIKIEILI--PDFRNQINHVLKIFKQ 162 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~-~~-~~~~~~~ll~~i~~~~~~~~i~~~~--~~~~~~~~e~l~~l~~ 162 (293)
++++|+|+++++.+.+.|+++|+|+|++...+. +. ....+.++++.+.+.....++++.+ |..++ ++.++.|++
T Consensus 152 srs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~i~--~ell~~l~~ 229 (418)
T PRK14336 152 SRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSALHDIPGLLRIRFLTSHPKDIS--QKLIDAMAH 229 (418)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHHHHhcCCccEEEEeccChhhcC--HHHHHHHHh
Confidence 899999999999999999999999998853331 11 1246889999887643224677754 54445 789999988
Q ss_pred c--CCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHHHHHhCCCCEEE
Q psy2895 163 A--LPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHDMRNHNIDILT 238 (293)
Q Consensus 163 a--G~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~~l~~l~~~~i~ 238 (293)
. ++..+++++|| ++++++.|+|+++.+++.+.++.++++.||+.+.+++|+|+ |||.+++.++++++++++++.++
T Consensus 230 ~~~~~~~l~lglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~pgi~i~~d~IvGfPGET~edf~~tl~fi~~~~~~~~~ 309 (418)
T PRK14336 230 LPKVCRSLSLPVQAGDDTILAAMRRGYTNQQYRELVERLKTAMPDISLQTDLIVGFPSETEEQFNQSYKLMADIGYDAIH 309 (418)
T ss_pred cCccCCceecCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCEEEEEEEEECCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 4 58999999999 89999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred eecCCCCCCCcccc
Q psy2895 239 IGQYLMPSRLHLPV 252 (293)
Q Consensus 239 i~~~~~p~~~~~a~ 252 (293)
++ .+.|.|++.+.
T Consensus 310 v~-~ysp~pGT~a~ 322 (418)
T PRK14336 310 VA-AYSPRPQTVAA 322 (418)
T ss_pred ee-ecCCCCCChhH
Confidence 98 45688877654
No 34
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.96 E-value=1.2e-26 Score=218.62 Aligned_cols=238 Identities=16% Similarity=0.239 Sum_probs=178.6
Q ss_pred cccCCCCceeEeccCChhcHHHHHHHHHhcC--c--hhh-hh-h-cCC-----CC---cc-ccccCceeEeeeeCcccCC
Q psy2895 10 EILKKPNWIRVKLISNIDNFNKTKNILRANN--L--VTV-CE-E-ASC-----PN---IG-ECFGRGVATFMIMGSICTR 73 (293)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~--~--~~l-~~-~-a~~-----~~---~~-~~~~~~~~~~~~~t~~C~~ 73 (293)
++++..|.+|.++ |+.++..+.++++... . ... .. . .+. |. .. ....+....++.++.|||+
T Consensus 87 e~~~~~p~vd~v~--g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~I~rGC~~ 164 (455)
T PRK14335 87 EIQKEFPRIDYVV--GTFAHARLESIFQEIEAKLKQDDYRFEFISERYREHPVSGYRFFPSSYSEGSFQSFIPIMNGCNN 164 (455)
T ss_pred HHHhhCCCCcEEE--CCCCHHHHHHHHHHHHhhcccccceecccccccccccccccccCcccccCCCceEEEEhhcCCCC
Confidence 4556667899998 5588888877764310 0 000 00 0 000 00 00 0012245567778999999
Q ss_pred CCcCcccCC--CCCCCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCC----ChhHHHHHHHHHHhh---CCC-cEEE
Q psy2895 74 RCKFCNISH--GRPDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDG----GSSHFVSCIKHIRKL---STK-IKIE 143 (293)
Q Consensus 74 ~C~fC~~~~--~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~----~~~~~~~ll~~i~~~---~~~-~~i~ 143 (293)
+|+||.++. ++.+.+++++|+++++.+.+.|+++|+|+|++...+... ....+.++++.+.+. .++ .+++
T Consensus 165 ~CsfC~~p~~rG~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ir 244 (455)
T PRK14335 165 FCSYCIVPYVRGREISRDLDAILQEIDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLLRHIVRRAEVTDQIRWIR 244 (455)
T ss_pred CCCCCCcccCCCCCccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccccCCccCHHHHHHHHHHhhcccCCceEEE
Confidence 999999986 344678999999999999999999999999875433211 113578888887521 122 3566
Q ss_pred EEc--CCCcCcHHHHHHHHHH--cCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-CC
Q psy2895 144 ILI--PDFRNQINHVLKIFKQ--ALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GE 217 (293)
Q Consensus 144 ~~~--~~~~~~~~e~l~~l~~--aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gE 217 (293)
+.+ |+.++ ++.++.|++ +|+.++++++|| ++++++.|+|+++.++++++++.++++.||+.+++++|+|+ ||
T Consensus 245 ~~s~~p~~i~--~ell~~m~~~~~gc~~l~iglQSgsd~vLk~m~R~~t~e~~~~~v~~ir~~~pgi~i~~d~IvGfPgE 322 (455)
T PRK14335 245 FMSSHPKDLS--DDLIATIAQESRLCRLVHLPVQHGSNGVLKRMNRSYTREHYLSLVGKLKASIPNVALSTDILIGFPGE 322 (455)
T ss_pred EeecCcccCC--HHHHHHHHhCCCCCCeEEEccCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCC
Confidence 543 45555 889999988 489999999999 89999999999999999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHhCCCCEEEeecCCCCCCCcccc
Q psy2895 218 NDEEILTVIHDMRNHNIDILTIGQYLMPSRLHLPV 252 (293)
Q Consensus 218 t~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~~a~ 252 (293)
|++++.++++++++++++.++++ .+.|.|++.+.
T Consensus 323 T~edf~~Tl~~i~~l~~~~~~~~-~~sp~pGT~~~ 356 (455)
T PRK14335 323 TEEDFEQTLDLMREVEFDSAFMY-HYNPREGTPAY 356 (455)
T ss_pred CHHHHHHHHHHHHhcCCCeEEEE-EecCCCCCchh
Confidence 99999999999999999999998 55788876653
No 35
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=99.96 E-value=9e-27 Score=218.58 Aligned_cols=235 Identities=14% Similarity=0.249 Sum_probs=178.7
Q ss_pred cccCCCCceeEeccCChhcHHHHHHHHHhcCchhhhhhcC-CCCccccccCceeEeeeeCcccCCCCcCcccCC--CCCC
Q psy2895 10 EILKKPNWIRVKLISNIDNFNKTKNILRANNLVTVCEEAS-CPNIGECFGRGVATFMIMGSICTRRCKFCNISH--GRPD 86 (293)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~l~~~a~-~~~~~~~~~~~~~~~~~~t~~C~~~C~fC~~~~--~~~~ 86 (293)
++.+..+.++.++ |+.++.++.+++....-.......+ .+..+...+++...++.+++|||++|+||..+. ++.+
T Consensus 89 ~~~~~~~~v~~v~--g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v~isrGCp~~CsFC~ip~~~G~~r 166 (440)
T PRK14862 89 QIREVHPKVLAVT--GPHAYEQVMEAVHEHVPKPHDPFVDLVPPQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLV 166 (440)
T ss_pred HHHhhCCCceEEE--CCCCHHHHHHHHHHhhccccccccccCcchhcccCCCcEEEEEeccCCCCCCccCCcccccCCcc
Confidence 4555556888887 6689999988875421000000000 001111223456677888999999999999886 4446
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCCCC-C---------CC--hhHHHHHHHHHHhhCCCcEEEEE--cCCCcCc
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDDLH-D---------GG--SSHFVSCIKHIRKLSTKIKIEIL--IPDFRNQ 152 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~-~---------~~--~~~~~~ll~~i~~~~~~~~i~~~--~~~~~~~ 152 (293)
.+++++|+++++.+.+.|+++|+|+|.+...+. + .. ..++.+|++.+.+.. .++++. .|....
T Consensus 167 sr~~e~Vv~Ei~~l~~~g~kei~l~~~d~~~yg~d~~~~~~~~~~~~~~~~~~~Ll~~l~~~~--~~~r~~~~~p~~~~- 243 (440)
T PRK14862 167 SRPIGDVLREAERLVKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPVKTRMTDLCEALGELG--AWVRLHYVYPYPHV- 243 (440)
T ss_pred ccCHHHHHHHHHHHHHCCCceEEEEecChhhhccccccccccccccchhhHHHHHHHHHHhcC--CEEEEecCCCCcCC-
Confidence 789999999999999999999999987632220 0 00 257999999998863 456653 242233
Q ss_pred HHHHHHHHHHcCCC--eeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHHH
Q psy2895 153 INHVLKIFKQALPD--VLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHD 228 (293)
Q Consensus 153 ~~e~l~~l~~aG~~--~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~~ 228 (293)
++.++.|++ |.- .+++++|| ++++++.|+++++++++++.++.++++.||+.+.+++|+|+ |||++++.+++++
T Consensus 244 -dell~~m~~-g~~~~~l~IglESgs~~vLk~m~r~~~~~~~~~~i~~lr~~~~~i~i~t~~IvGfPgET~edf~~tl~f 321 (440)
T PRK14862 244 -DEVIPLMAE-GKILPYLDIPFQHASPRVLKRMKRPASVEKTLERIKKWREICPDLTIRSTFIVGFPGETEEDFQMLLDF 321 (440)
T ss_pred -HHHHHHHhc-CCCccccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHCCCceecccEEEECCCCCHHHHHHHHHH
Confidence 789999988 654 68889999 89999999999999999999999999988999999999999 9999999999999
Q ss_pred HHhCCCCEEEeecCCCCCCCcccc
Q psy2895 229 MRNHNIDILTIGQYLMPSRLHLPV 252 (293)
Q Consensus 229 l~~l~~~~i~i~~~~~p~~~~~a~ 252 (293)
+++++++.++++ .+.|.|++.+.
T Consensus 322 i~e~~~d~~~~f-~ysP~pGT~a~ 344 (440)
T PRK14862 322 LKEAQLDRVGCF-KYSPVEGATAN 344 (440)
T ss_pred HHHcCCCeeeeE-eecCCCCCchh
Confidence 999999999998 56788888773
No 36
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=99.96 E-value=9.2e-29 Score=224.48 Aligned_cols=202 Identities=18% Similarity=0.217 Sum_probs=166.0
Q ss_pred hcHHHHHHHHHhcCchhhhhhcCCCCcc-ccccCceeEe-----eeeCcccCCCCcCcccCCCC--C--CCCChhHHHHH
Q psy2895 27 DNFNKTKNILRANNLVTVCEEASCPNIG-ECFGRGVATF-----MIMGSICTRRCKFCNISHGR--P--DPLDIEEPKKI 96 (293)
Q Consensus 27 ~~~~~~~~l~~~~~~~~l~~~a~~~~~~-~~~~~~~~~~-----~~~t~~C~~~C~fC~~~~~~--~--~~~~~eei~~~ 96 (293)
-+.++++.|+...+...+...|+ ..+ ....+...+| +.+||.|..+|.||+|+..+ + ..+++|||.++
T Consensus 21 l~~~d~~~Ll~~~~~~~l~~~A~--~~r~~~~~~~~vtyv~n~~in~TN~C~~~C~fCaF~~~~~~~~~y~Ls~eeI~~~ 98 (370)
T COG1060 21 LTREDALALLSPADLEELEELAD--KARRRKRVGDGVTYVVNRNINYTNICVNDCTFCAFYRKPGDPKAYTLSPEEILEE 98 (370)
T ss_pred CCHHHHHHHhccCcHHHHHHHHH--HHHHhhccCCcEEEEEeecCCcchhhcCCCCccccccCCCCccccccCHHHHHHH
Confidence 56788888887667777777777 555 3333333333 44699999999999998753 1 36999999999
Q ss_pred HHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcC-CC--cCc-----HHHHHHHHHHcCCCee
Q psy2895 97 AYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIP-DF--RNQ-----INHVLKIFKQALPDVL 168 (293)
Q Consensus 97 ~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~-~~--~~~-----~~e~l~~l~~aG~~~i 168 (293)
++++.+.|+++|.++||+.|++ +.+++.++++.|++.+|++.++.+++ ++ ..+ .+|.+++|++||++.+
T Consensus 99 ~~~~~~~G~~Evli~gG~~p~~---~~~y~~~~~~~ik~~~p~~~i~a~s~~ei~~~~~~~~~s~~E~l~~Lk~aGldsm 175 (370)
T COG1060 99 VREAVKRGITEVLIVGGEHPEL---SLEYYEELFRTIKEEFPDLHIHALSAGEILFLAREGGLSYEEVLKRLKEAGLDSM 175 (370)
T ss_pred HHHHHHcCCeEEEEecCcCCCc---chHHHHHHHHHHHHhCcchhhcccCHHHhHHHHhccCCCHHHHHHHHHHcCCCcC
Confidence 9999999999999999998655 36799999999999999888888775 22 111 3788999999999999
Q ss_pred eecccc--chHHHhhcCC-CCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCC
Q psy2895 169 NHNIET--VPRLYKKVRP-GSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNID 235 (293)
Q Consensus 169 ~~~les--s~~~~~~i~~-~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~ 235 (293)
.++... ++++.+.+++ +.++++|+++++.|+++ |++.+++|++|++||.+|+.+++..++++|-.
T Consensus 176 pg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~l--GI~~tatml~Gh~E~~ed~~~hl~~ir~lQ~~ 243 (370)
T COG1060 176 PGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHRL--GIPTTATMLLGHVETREDRIDHLEHIRDLQDE 243 (370)
T ss_pred cCcceeechHHHHHhhCCCCCCHHHHHHHHHHHHHc--CCCccceeEEEecCCHHHHHHHHHHHHHHHHH
Confidence 986554 5777777775 55999999999999999 99999999999999999999999999998844
No 37
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=99.95 E-value=2.4e-26 Score=214.84 Aligned_cols=232 Identities=17% Similarity=0.265 Sum_probs=175.2
Q ss_pred CCceeEeccCChhcHHHHHHHHHhcCch----hhh----hhcCCCCccc-cccCceeEeeeeCcccCCCCcCcccCC--C
Q psy2895 15 PNWIRVKLISNIDNFNKTKNILRANNLV----TVC----EEASCPNIGE-CFGRGVATFMIMGSICTRRCKFCNISH--G 83 (293)
Q Consensus 15 ~~~~~~~~~~g~~~~~~~~~l~~~~~~~----~l~----~~a~~~~~~~-~~~~~~~~~~~~t~~C~~~C~fC~~~~--~ 83 (293)
-+.+|.++ |+++...+.++++..... ... .....|.... .+.+....++.+++|||++|+||..+. +
T Consensus 85 ~~~vD~vv--~~e~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~isrGCp~~CsfC~~~~~~g 162 (414)
T TIGR01579 85 LKDVDLVL--GNKEKDKINKLLSLGLKTSFYRVKNKNFSREKGVPEYEEVAFEGHTRAFIKVQDGCNFFCSYCIIPFARG 162 (414)
T ss_pred CCCCcEEE--CCCCHHHHHHHHHHHhcccCccccccccccccccccccccccCCCeEEEEEeccCcCCCCCCCceeeecC
Confidence 46888888 437777777777431100 000 0000011100 122345566778999999999999876 4
Q ss_pred CCCCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCC--ChhHHHHHHHHHHhhCCCcEEEEEc--CCCcCcHHHHHHH
Q psy2895 84 RPDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDG--GSSHFVSCIKHIRKLSTKIKIEILI--PDFRNQINHVLKI 159 (293)
Q Consensus 84 ~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~--~~~~~~~ll~~i~~~~~~~~i~~~~--~~~~~~~~e~l~~ 159 (293)
+.+.+++++|+++++.+.+.|+++|+|+|.+...+.+. +..++.++++.+.+.....++++.+ |+.++ ++.++.
T Consensus 163 ~~r~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~--~ell~~ 240 (414)
T TIGR01579 163 RSRSVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQIPGIKRIRLSSIDPEDID--EELLEA 240 (414)
T ss_pred CCccCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHhcCCCCcEEEEeCCChhhCC--HHHHHH
Confidence 44679999999999999999999999998775333211 1246889999888653233566643 44455 889999
Q ss_pred HHHcC--CCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHHHHHhCCCC
Q psy2895 160 FKQAL--PDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHDMRNHNID 235 (293)
Q Consensus 160 l~~aG--~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~~l~~l~~~ 235 (293)
|+++| +..+++|+|| ++++++.|+|+++.+++.+.++.+++..||+.+++++|+|+ |||++++.++++++++++++
T Consensus 241 m~~~~~~~~~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~~gi~i~~~~IvG~PgET~ed~~~tl~~i~~~~~~ 320 (414)
T TIGR01579 241 IASEKRLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVRPDYAFGTDIIVGFPGESEEDFQETLRMVKEIEFS 320 (414)
T ss_pred HHhcCccCCCeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeeeeeEEEECCCCCHHHHHHHHHHHHhCCCC
Confidence 99887 7899999999 89999999999999999999999999666999999999999 99999999999999999999
Q ss_pred EEEeecCCCCCCCccc
Q psy2895 236 ILTIGQYLMPSRLHLP 251 (293)
Q Consensus 236 ~i~i~~~~~p~~~~~a 251 (293)
.++++ .+.|.|++.+
T Consensus 321 ~~~~~-~~sp~pGT~~ 335 (414)
T TIGR01579 321 HLHIF-PYSARPGTPA 335 (414)
T ss_pred EEEee-ecCCCCCCch
Confidence 99998 5578777655
No 38
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.95 E-value=2e-26 Score=216.38 Aligned_cols=236 Identities=13% Similarity=0.238 Sum_probs=177.7
Q ss_pred cccCCCCceeEeccCChhcHHHHHHHHHhcC-----chhhhhh-cCCCCccccc----cCceeEeeeeCcccCCCCcCcc
Q psy2895 10 EILKKPNWIRVKLISNIDNFNKTKNILRANN-----LVTVCEE-ASCPNIGECF----GRGVATFMIMGSICTRRCKFCN 79 (293)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~-----~~~l~~~-a~~~~~~~~~----~~~~~~~~~~t~~C~~~C~fC~ 79 (293)
.+++..+++|.++ |++....+.++++... ...+... ...+.+. .+ .+....++.+++|||++|+||.
T Consensus 88 ~~~~~~p~vD~vv--~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ld-~~p~~~~~~~~a~v~i~rGC~~~CsFC~ 164 (437)
T PRK14331 88 EIVQKAPFIDIVF--GTFNIHHLPELLEQAKAGNKAIEILEEIDEDENKLD-EYPTVRDNKYCAYVTVMRGCDKKCTYCV 164 (437)
T ss_pred HHHhcCCCCcEEE--CCCCHHHHHHHHHHHhcCCCceeeeccccccccccc-ccccccCCCcEEEEEeccCcCCCCccCC
Confidence 3445667999888 4477888877765411 0000000 0000000 01 1234567778999999999999
Q ss_pred cCC--CCCCCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCC-CChhHHHHHHHHHHhhCCCcEEEEEc--CCCcCcHH
Q psy2895 80 ISH--GRPDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHD-GGSSHFVSCIKHIRKLSTKIKIEILI--PDFRNQIN 154 (293)
Q Consensus 80 ~~~--~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~-~~~~~~~~ll~~i~~~~~~~~i~~~~--~~~~~~~~ 154 (293)
++. ++.+++++++|+++++.+.+.|+++|+|+|.+...+.. .....+.++++.+.+..+..++++.+ |..++ +
T Consensus 165 ~p~~~g~~rsr~~e~V~~Ei~~l~~~g~~eI~l~d~~~~~y~~~~~~~~~~~Ll~~l~~~~g~~~i~~~~~~p~~l~--~ 242 (437)
T PRK14331 165 VPKTRGKERSRRLGSILDEVQWLVDDGVKEIHLIGQNVTAYGKDIGDVPFSELLYAVAEIDGVERIRFTTGHPRDLD--E 242 (437)
T ss_pred cccCCCCcccCCHHHHHHHHHHHHHCCCeEEEEeeeccccccCCCCCCCHHHHHHHHhcCCCccEEEEeccCcccCC--H
Confidence 986 34467899999999999999999999999987533311 11135788888887653223566654 44455 8
Q ss_pred HHHHHHHHc--CCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHHHHH
Q psy2895 155 HVLKIFKQA--LPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHDMR 230 (293)
Q Consensus 155 e~l~~l~~a--G~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~~l~ 230 (293)
+.++.|+++ |+..+++++|| ++++++.|+|+++.++++++++.++++.||+.+++++|+|+ |||++|+.+++++++
T Consensus 243 ell~~~~~~~~~~~~l~igiqSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~~gi~i~~d~IvG~PgET~ed~~~tl~~l~ 322 (437)
T PRK14331 243 DIIKAMADIPQVCEHLHLPFQAGSDRILKLMDRGYTKEEYLEKIELLKEYIPDITFSTDIIVGFPTETEEDFEETLDVLK 322 (437)
T ss_pred HHHHHHHcCCccCCceecccccCChHHHHHcCCCCCHHHHHHHHHHHHHhCCCCEEecCEEEECCCCCHHHHHHHHHHHH
Confidence 899999988 59999999999 89999999999999999999999999999999999999999 999999999999999
Q ss_pred hCCCCEEEeecCCCCCCCccc
Q psy2895 231 NHNIDILTIGQYLMPSRLHLP 251 (293)
Q Consensus 231 ~l~~~~i~i~~~~~p~~~~~a 251 (293)
+++++.++++. +.|.|++.+
T Consensus 323 ~l~~~~i~~f~-~sp~pGT~~ 342 (437)
T PRK14331 323 KVEFEQVFSFK-YSPRPGTPA 342 (437)
T ss_pred hcCcceeeeeE-ecCCCCcch
Confidence 99999999884 478777655
No 39
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.95 E-value=1.6e-26 Score=219.66 Aligned_cols=238 Identities=15% Similarity=0.254 Sum_probs=178.7
Q ss_pred ccccCCCCceeEeccCChhcHHHHHHHHHhcCchh---h--hhh-cCCCC-ccccccCceeEeeeeCcccCCCCcCcccC
Q psy2895 9 IEILKKPNWIRVKLISNIDNFNKTKNILRANNLVT---V--CEE-ASCPN-IGECFGRGVATFMIMGSICTRRCKFCNIS 81 (293)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~---l--~~~-a~~~~-~~~~~~~~~~~~~~~t~~C~~~C~fC~~~ 81 (293)
.++++..++||.++ |+++...+.+++....... . ... ...+. .-....+....++.++.|||++|+||..+
T Consensus 100 ee~~~~~p~VD~Vv--g~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~p~~~p~~~~~~~~a~v~isrGCp~~CsFC~ip 177 (502)
T PRK14326 100 DTILKRAPWVDVVF--GTHNIGSLPTLLERARHNKEAQVEIAESLEQFPSTLPARRESAYAAWVSISVGCNNTCTFCIVP 177 (502)
T ss_pred HHHHhhCCCCeEEE--CCCCHHHHHHHHHHHhhCCCccccccccccccccccccccCCCceEEEEEccCCCCCCccCcee
Confidence 34565667999888 4477888887775421000 0 000 00000 00011223445777899999999999998
Q ss_pred C--CCCCCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCC-C-CChhHHHHHHHHHHhhCCCcEEEEEc--CCCcCcHHH
Q psy2895 82 H--GRPDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLH-D-GGSSHFVSCIKHIRKLSTKIKIEILI--PDFRNQINH 155 (293)
Q Consensus 82 ~--~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~-~-~~~~~~~~ll~~i~~~~~~~~i~~~~--~~~~~~~~e 155 (293)
. ++.+++++|+|+++++.+.+.|+++|+|+|.+...+- + .+...+.++++.+.+..+..++++.+ |..++ ++
T Consensus 178 ~~rG~~rsr~~e~Vv~Ei~~l~~~g~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~l~~i~~l~~ir~~~~~p~~~~--~e 255 (502)
T PRK14326 178 SLRGKEKDRRPGDILAEVQALVDEGVLEVTLLGQNVNAYGVSFGDRGAFSKLLRACGEIDGLERVRFTSPHPAEFT--DD 255 (502)
T ss_pred ccCCCcccCCHHHHHHHHHHHHHCCCceEEEEeecccccccCCCCHHHHHHHHHHHHhcCCccEEEEeccChhhCC--HH
Confidence 6 4446789999999999999999999999998753320 1 12346788888876542212566654 44455 88
Q ss_pred HHHHHHHcC--CCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHHHHHh
Q psy2895 156 VLKIFKQAL--PDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHDMRN 231 (293)
Q Consensus 156 ~l~~l~~aG--~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~~l~~ 231 (293)
.++.|+++| +..+++++|| ++++++.|+|+++.+++.+.++.++++.||+.+++++|+|+ |||++|+.++++++++
T Consensus 256 ll~~m~~~g~~~~~l~lglQSgsd~iLk~m~R~~t~~~~~~~v~~lr~~~~~i~i~~~~IvGfPgET~edf~~Tl~~i~~ 335 (502)
T PRK14326 256 VIEAMAETPNVCPQLHMPLQSGSDRVLRAMRRSYRSERFLGILEKVRAAMPDAAITTDIIVGFPGETEEDFQATLDVVRE 335 (502)
T ss_pred HHHHHHhcCCcCCcEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 999999987 8999999999 89999999999999999999999999888999999999999 9999999999999999
Q ss_pred CCCCEEEeecCCCCCCCccc
Q psy2895 232 HNIDILTIGQYLMPSRLHLP 251 (293)
Q Consensus 232 l~~~~i~i~~~~~p~~~~~a 251 (293)
++++.++++. +.|.|++.+
T Consensus 336 ~~~~~~~~f~-~sp~pGT~~ 354 (502)
T PRK14326 336 ARFSSAFTFQ-YSKRPGTPA 354 (502)
T ss_pred cCCCEEEEEe-ecCCCCChH
Confidence 9999988874 578777654
No 40
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.95 E-value=1.6e-26 Score=217.29 Aligned_cols=239 Identities=13% Similarity=0.196 Sum_probs=180.3
Q ss_pred ccccCCCCceeEeccCChhcHHHHHHHHHhcC---chhhh--hh-cCCCCcc---ccccCceeEeeeeCcccCCCCcCcc
Q psy2895 9 IEILKKPNWIRVKLISNIDNFNKTKNILRANN---LVTVC--EE-ASCPNIG---ECFGRGVATFMIMGSICTRRCKFCN 79 (293)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~---~~~l~--~~-a~~~~~~---~~~~~~~~~~~~~t~~C~~~C~fC~ 79 (293)
..+++.-|+||.++ |++....+.+++.... ...+. .. ...+... .....+...++.++.|||++|+||+
T Consensus 89 ~~~~~~~p~vd~vv--~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v~i~rGC~~~CsFC~ 166 (446)
T PRK14337 89 SGFFSRFPQVRLVF--GTDGIAMAPQALERLAEEPDLRLSLLDFSEHYPEREALWGNGTVPASAFVNIMQGCDNFCAYCI 166 (446)
T ss_pred HHHHhhCCCCcEEE--CCCCHHHHHHHHHHHhcCCCceecccccccccccccccccccCCCcEEEEEeccCCCCCCcCCC
Confidence 34555677999988 4477888887775421 00000 00 0000000 1112235567888999999999999
Q ss_pred cCC--CCCCCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCC-CC--ChhHHHHHHHHHHhhCCCcEEEEEc--CCCcCc
Q psy2895 80 ISH--GRPDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLH-DG--GSSHFVSCIKHIRKLSTKIKIEILI--PDFRNQ 152 (293)
Q Consensus 80 ~~~--~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~-~~--~~~~~~~ll~~i~~~~~~~~i~~~~--~~~~~~ 152 (293)
++. ++.+++++++|+++++.+.+.|+++|+|+|.+...+. +. ....+.++++.+.+..+..++++.+ |..++
T Consensus 167 ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll~~l~~~~g~~~ir~~~~~p~~i~- 245 (446)
T PRK14337 167 VPYTRGRQKSRSSAAVLDECRALVDRGAREITLLGQNVNSYGQDKHGDGTSFAQLLHKVAALPGLERLRFTTPHPKDIA- 245 (446)
T ss_pred cccCCCCCeeCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCCCccHHHHHHHHHhcCCCcEEEEccCCcccCC-
Confidence 986 4446789999999999999999999999997743331 11 1236888888887642222577643 54455
Q ss_pred HHHHHHHHHH--cCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHHH
Q psy2895 153 INHVLKIFKQ--ALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHD 228 (293)
Q Consensus 153 ~~e~l~~l~~--aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~~ 228 (293)
++.++.|++ .|+.++++++|| ++++++.|+|+++.+++.++++.+++..||+.+++++|+|+ |||++|+.+++++
T Consensus 246 -~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~~~i~i~~d~IvG~PgET~ed~~~tl~~ 324 (446)
T PRK14337 246 -PEVIEAFGELPNLCPRLHLPLQSGSDRILKAMGRKYDMARYLDIVTDLRAARPDIALTTDLIVGFPGETEEDFEQTLEA 324 (446)
T ss_pred -HHHHHHHHhCCcccCeEEECCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEECCCCCHHHHHHHHHH
Confidence 789999988 468999999999 89999999999999999999999999989999999999999 9999999999999
Q ss_pred HHhCCCCEEEeecCCCCCCCcccc
Q psy2895 229 MRNHNIDILTIGQYLMPSRLHLPV 252 (293)
Q Consensus 229 l~~l~~~~i~i~~~~~p~~~~~a~ 252 (293)
+++++++.++++ .+.|.|++.|.
T Consensus 325 l~~~~~~~~~~f-~ysp~pgT~a~ 347 (446)
T PRK14337 325 MRTVGFASSFSF-CYSDRPGTRAE 347 (446)
T ss_pred HHhcCCCeeEEE-ecCCCCCCccc
Confidence 999999999998 45788877664
No 41
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=99.95 E-value=2.8e-26 Score=215.43 Aligned_cols=237 Identities=14% Similarity=0.256 Sum_probs=180.2
Q ss_pred cccCCCCceeEeccCChhcHHHHHHHHHhcC-----chhhhhhcC-C-CCcc-ccccCceeEeeeeCcccCCCCcCcccC
Q psy2895 10 EILKKPNWIRVKLISNIDNFNKTKNILRANN-----LVTVCEEAS-C-PNIG-ECFGRGVATFMIMGSICTRRCKFCNIS 81 (293)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~-----~~~l~~~a~-~-~~~~-~~~~~~~~~~~~~t~~C~~~C~fC~~~ 81 (293)
.+.+..++||.++ |+.++..+.+++.... ...+..... . +.+. ....+....++.+++||+++|+||.++
T Consensus 88 ~~~~~~~~vd~v~--g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~rGC~~~CsfC~~~ 165 (438)
T TIGR01574 88 EIFQRAPYVDFVF--GTRNIHRLPQAIKTPLTQKFMVVDIDSDESEVAGYFADFRNEGIYKSFINIMIGCNKFCTYCIVP 165 (438)
T ss_pred HHHhcCCCCcEEE--CCCCHHHHHHHHHHHhcCCCceeeeccccccccccccccccCCceeEEeehhcCCCCCCCCCCee
Confidence 3444557899888 6688888888775421 001110000 0 0000 112234567788899999999999998
Q ss_pred C--CCCCCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCC----ChhHHHHHHHHHHhhCCCcEEEEEc--CCCcCcH
Q psy2895 82 H--GRPDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDG----GSSHFVSCIKHIRKLSTKIKIEILI--PDFRNQI 153 (293)
Q Consensus 82 ~--~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~----~~~~~~~ll~~i~~~~~~~~i~~~~--~~~~~~~ 153 (293)
. ++.+.+++++|+++++.+.+.|+++|+|+|.+...+... ....+.++++.+.+.....++++.+ |..++
T Consensus 166 ~~~G~~rsr~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~g~d~~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~l~-- 243 (438)
T TIGR01574 166 YTRGDEISRPFDDILQEVQKLAEKGVREITLLGQNVNAYRGKDFEGKTMDFSDLLRELSTIDGIERIRFTSSHPLDFD-- 243 (438)
T ss_pred eecCCCcccCHHHHHHHHHHHHHcCCeEEEEEecccCCccCCCCCCCcccHHHHHHHHHhcCCceEEEEecCCcccCC--
Confidence 6 444678999999999999999999999998765433111 1236888999887642223566643 44455
Q ss_pred HHHHHHHHHcC--CCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHHHH
Q psy2895 154 NHVLKIFKQAL--PDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHDM 229 (293)
Q Consensus 154 ~e~l~~l~~aG--~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~~l 229 (293)
++.++.|+++| +.++++++|| ++++++.|+|+++.+++++.++.++++.||+.+.+++|+|+ |||++|+.++++++
T Consensus 244 ~ell~~l~~~g~~~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~ir~~~~~i~i~~d~IvG~PgEt~ed~~~tl~~i 323 (438)
T TIGR01574 244 DDLIEVFANNPKLCKSMHLPVQSGSSEILKLMKRGYTREWYLNLVRKLRAACPNVSISTDIIVGFPGETEEDFEETLDLL 323 (438)
T ss_pred HHHHHHHHhCCCccCceeeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEeeCEEEeCCCCCHHHHHHHHHHH
Confidence 88999999998 9999999999 89999999999999999999999999989999999999999 99999999999999
Q ss_pred HhCCCCEEEeecCCCCCCCccc
Q psy2895 230 RNHNIDILTIGQYLMPSRLHLP 251 (293)
Q Consensus 230 ~~l~~~~i~i~~~~~p~~~~~a 251 (293)
++++++.++++.| .|.|++.+
T Consensus 324 ~~~~~~~~~~~~~-sp~pGT~~ 344 (438)
T TIGR01574 324 REVEFDSAFSFIY-SPRPGTPA 344 (438)
T ss_pred HhcCCCeeeeEEe-cCCCCCch
Confidence 9999999999844 67777654
No 42
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.95 E-value=4.5e-26 Score=214.95 Aligned_cols=230 Identities=14% Similarity=0.244 Sum_probs=178.4
Q ss_pred cCCCCceeEeccCChhcHHHHHHHHHhcCchhhhhhcCCCCcc-ccc-cCceeEeeeeCcccCCCCcCcccCC--CCCCC
Q psy2895 12 LKKPNWIRVKLISNIDNFNKTKNILRANNLVTVCEEASCPNIG-ECF-GRGVATFMIMGSICTRRCKFCNISH--GRPDP 87 (293)
Q Consensus 12 ~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~l~~~a~~~~~~-~~~-~~~~~~~~~~t~~C~~~C~fC~~~~--~~~~~ 87 (293)
.+..|.+|.++ |+++++++.+++... ...+- . +... ..+ .+....++.+++|||++|+||..+. ++.+.
T Consensus 111 ~~~~p~vd~v~--g~~~~~~i~~~~~~~-~~~~~-~---~~~~~~~~~~~~~~~~i~I~rGC~~~CsfC~~p~~~G~~rs 183 (459)
T PRK14338 111 AERLPMVDHFV--SPSAVDEVVALAPNP-IYQLD-E---PALPVADWSHPPVTVHVPIIYGCNMSCSYCVIPLRRGRERS 183 (459)
T ss_pred HhcCCCCcEEE--CCccHHHHHHHHHhh-ccccc-c---ccccccccCCCceEEEEEcccCCCCCCCcCCeeccCCCCcc
Confidence 35677899888 558888888877432 11110 0 0111 111 2345677888999999999999986 44467
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCC-C-CChhHHHHHHHHHHhhCCCcEEEEEc--CCCcCcHHHHHHHHHHc
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLH-D-GGSSHFVSCIKHIRKLSTKIKIEILI--PDFRNQINHVLKIFKQA 163 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~-~-~~~~~~~~ll~~i~~~~~~~~i~~~~--~~~~~~~~e~l~~l~~a 163 (293)
+++++|+++++.+.+.|+++|+|+|.+...+. + .+...+.++++.+.+.....++++.+ |..++ ++.++.|++.
T Consensus 184 r~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~~gi~~ir~~~~~p~~i~--~ell~~l~~~ 261 (459)
T PRK14338 184 RPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEIPGLERLRFLTSHPAWMT--DRLIHAVARL 261 (459)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHhcCCcceEEEEecChhhcC--HHHHHHHhcc
Confidence 89999999999999999999999997643221 0 01346889999998752112566643 55566 7899999884
Q ss_pred --CCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHHHHHhCCCCEEEe
Q psy2895 164 --LPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHDMRNHNIDILTI 239 (293)
Q Consensus 164 --G~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~~l~~l~~~~i~i 239 (293)
|+.++++++|| ++++++.|+|+++.+++++.++.+++..||+.+.+++|+|+ |||.+|+.++++++++++++.+++
T Consensus 262 ~~~~~~v~lglQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~i~~d~IvG~PgET~ed~~~ti~~l~~l~~~~v~i 341 (459)
T PRK14338 262 PKCCPHINLPVQAGDDEVLKRMRRGYTVARYRELIARIREAIPDVSLTTDIIVGHPGETEEQFQRTYDLLEEIRFDKVHI 341 (459)
T ss_pred cccccceecCcccCCHHHHHhccCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHcCCCEeEE
Confidence 58999999999 89999999999999999999999999989999999999999 999999999999999999999999
Q ss_pred ecCCCCCCCccc
Q psy2895 240 GQYLMPSRLHLP 251 (293)
Q Consensus 240 ~~~~~p~~~~~a 251 (293)
+. +.|.+++.+
T Consensus 342 ~~-ysp~pGT~~ 352 (459)
T PRK14338 342 AA-YSPRPGTLA 352 (459)
T ss_pred Ee-cCCCCCChh
Confidence 84 467776544
No 43
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=99.95 E-value=5.6e-26 Score=213.13 Aligned_cols=236 Identities=15% Similarity=0.230 Sum_probs=178.6
Q ss_pred ccCCCCceeEeccCChhcHHHHHHHHHhcCchh-hhhhcCCC---CccccccCceeEeeeeCcccCCCCcCcccCC--CC
Q psy2895 11 ILKKPNWIRVKLISNIDNFNKTKNILRANNLVT-VCEEASCP---NIGECFGRGVATFMIMGSICTRRCKFCNISH--GR 84 (293)
Q Consensus 11 ~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~-l~~~a~~~---~~~~~~~~~~~~~~~~t~~C~~~C~fC~~~~--~~ 84 (293)
++++.+.+|.++ |...+.++.+.+....... .......+ ..+..+.++..+++.+++|||++|+||+.+. ++
T Consensus 83 ~~~~~~~vd~v~--g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~srGC~~~CsfC~~~~~~G~ 160 (430)
T TIGR01125 83 LKEEIPEVHAIT--GSGDVENILNAIESREPGDKIPFKSEIEMGEVPRILLTPRHYAYLKVAEGCNRRCAFCIIPSIRGK 160 (430)
T ss_pred HHhhCCCCcEEE--CCCCHHHHHHHHHHHhccCCcccccccccccccccccCCCeEEEEEEccCCCCCCCcCCeecccCC
Confidence 444566788877 5578888888775422111 00000000 0111233455667888999999999999986 34
Q ss_pred CCCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCC--CChhHHHHHHHHHHhhCCCcEEEEEc--CCCcCcHHHHHHHH
Q psy2895 85 PDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHD--GGSSHFVSCIKHIRKLSTKIKIEILI--PDFRNQINHVLKIF 160 (293)
Q Consensus 85 ~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~--~~~~~~~~ll~~i~~~~~~~~i~~~~--~~~~~~~~e~l~~l 160 (293)
.+.+++++|+++++.+.+.|+++|+|++.+...+.. .+..++.++++.|.+.....++++.+ |+.++ ++.++.|
T Consensus 161 ~r~r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i~~~~~i~~~r~~~~~p~~~~--~ell~~~ 238 (430)
T TIGR01125 161 LRSRPIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYRESKLVDLLEELGKVGGIYWIRMHYLYPDELT--DDVIDLM 238 (430)
T ss_pred ceecCHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCCcccHHHHHHHHHhcCCccEEEEccCCcccCC--HHHHHHH
Confidence 567899999999999999999999998865422210 11357899999998753122455432 45555 8999999
Q ss_pred HHcC--CCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHHHHHhCCCCE
Q psy2895 161 KQAL--PDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHDMRNHNIDI 236 (293)
Q Consensus 161 ~~aG--~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~~l~~l~~~~ 236 (293)
+++| +..+++++|| ++++++.|+++++.+++++.++.++++.|++.+.+++|+|+ |||++++.++++++++++++.
T Consensus 239 ~~~~~~~~~l~iglES~s~~vLk~m~k~~~~~~~~~~i~~l~~~~~~i~i~~~~I~G~PgET~e~~~~t~~fl~~~~~~~ 318 (430)
T TIGR01125 239 AEGPKVLPYLDIPLQHASDRILKLMRRPGSGEQQLDFIERLREKCPDAVLRTTFIVGFPGETEEDFQELLDFVEEGQFDR 318 (430)
T ss_pred hhCCcccCceEeCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHhCCCCeEeEEEEEECCCCCHHHHHHHHHHHHhcCCCE
Confidence 9985 7899999999 89999999999999999999999999977888999999999 999999999999999999999
Q ss_pred EEeecCCCCCCCccc
Q psy2895 237 LTIGQYLMPSRLHLP 251 (293)
Q Consensus 237 i~i~~~~~p~~~~~a 251 (293)
++++ .+.|.|++.+
T Consensus 319 ~~~~-~~sp~pGT~~ 332 (430)
T TIGR01125 319 LGAF-TYSPEEGTDA 332 (430)
T ss_pred Eeee-eccCCCCCcc
Confidence 9998 5578887655
No 44
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.95 E-value=6.3e-26 Score=212.94 Aligned_cols=231 Identities=14% Similarity=0.204 Sum_probs=172.1
Q ss_pred ceeEeccCChhcHHHHHHHHHhcCchhh-hhhcC-CCCc----cccccCceeEeeeeCcccCCCCcCcccCC--CCCCCC
Q psy2895 17 WIRVKLISNIDNFNKTKNILRANNLVTV-CEEAS-CPNI----GECFGRGVATFMIMGSICTRRCKFCNISH--GRPDPL 88 (293)
Q Consensus 17 ~~~~~~~~g~~~~~~~~~l~~~~~~~~l-~~~a~-~~~~----~~~~~~~~~~~~~~t~~C~~~C~fC~~~~--~~~~~~ 88 (293)
.+|.++ |+++...+.++++....... ..... .+.. .....++...++.+++|||++|+||.++. ++.+.+
T Consensus 92 ~~d~vv--g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~rGC~~~CsFC~ip~~~G~~rsr 169 (434)
T PRK14330 92 GADFVI--GTRAVPKVTEAVKRALNGEKVALFEDKLDEITYELPRIRSSKHHAWVTIIYGCNRFCTYCIVPYTRGREKSR 169 (434)
T ss_pred CCcEEE--cCCCHHHHHHHHHHHhcCCceEeecccccccccccccccCCCcEEEEEcccCCCCCCCCCceECcCCCCccC
Confidence 677777 44667777777754210100 00000 0000 00111234566778999999999999976 344678
Q ss_pred ChhHHHHHHHHHHHCCCcEEEEeeecCCCCC-C-CChhHHHHHHHHHHhhCCCcEEEEEc--CCCcCcHHHHHHHHHHcC
Q psy2895 89 DIEEPKKIAYTINKLKLNYVVITSVNRDDLH-D-GGSSHFVSCIKHIRKLSTKIKIEILI--PDFRNQINHVLKIFKQAL 164 (293)
Q Consensus 89 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~-~-~~~~~~~~ll~~i~~~~~~~~i~~~~--~~~~~~~~e~l~~l~~aG 164 (293)
++++|+++++.+.+.|+++|+|+|++...+. + .+...+.++++.+.+..+...+++.+ |..++ ++.++.|+++|
T Consensus 170 ~~e~Iv~Ei~~l~~~g~kei~l~~~n~~~yg~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~p~~~~--~ell~~l~~~~ 247 (434)
T PRK14330 170 PMEDILEEVEKLAKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEASKIEGIERIWFLTSYPTDFS--DELIEVIANSP 247 (434)
T ss_pred CHHHHHHHHHHHHHCCCcEEEEEEecccccccCCCCCccHHHHHHHHHhcCCceEEEEecCChhhcC--HHHHHHHhcCC
Confidence 9999999999999999999999988754331 1 11246778888776543222455543 43344 78999999887
Q ss_pred --CCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 165 --PDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 165 --~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
+.++++++|| ++++++.|+|+++.+++.+.++.++++.||+.+++++|+|+ |||++++.++++++++++++.++++
T Consensus 248 ~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i~i~~d~IvGfPgET~edf~~tl~fi~~~~~~~~~~~ 327 (434)
T PRK14330 248 KVAKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKVPDASISSDIIVGFPTETEEDFMETVDLVEKAQFERLNLA 327 (434)
T ss_pred cccCceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEECCCCCHHHHHHHHHHHHhcCCCEEeee
Confidence 7889999999 89999999999999999999999999989999999999999 9999999999999999999999998
Q ss_pred cCCCCCCCcccc
Q psy2895 241 QYLMPSRLHLPV 252 (293)
Q Consensus 241 ~~~~p~~~~~a~ 252 (293)
.+.|.|++.+.
T Consensus 328 -~~sp~pGT~~~ 338 (434)
T PRK14330 328 -IYSPREGTVAW 338 (434)
T ss_pred -eccCCCCChhh
Confidence 56788887664
No 45
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.95 E-value=8.2e-26 Score=212.38 Aligned_cols=236 Identities=16% Similarity=0.251 Sum_probs=178.5
Q ss_pred cccCCCCceeEeccCChhcHHHHHHHHHhcC-----chhhhh-hcC-CCCcc-ccccCceeEeeeeCcccCCCCcCcccC
Q psy2895 10 EILKKPNWIRVKLISNIDNFNKTKNILRANN-----LVTVCE-EAS-CPNIG-ECFGRGVATFMIMGSICTRRCKFCNIS 81 (293)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~-----~~~l~~-~a~-~~~~~-~~~~~~~~~~~~~t~~C~~~C~fC~~~ 81 (293)
.+.+..+++|.++ |++++..+.+++.... ...+.. ... .+... ..+ +....++.+++|||++|+||.++
T Consensus 91 ~~~~~~~~vd~v~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~i~rGC~~~CsfC~~p 167 (439)
T PRK14328 91 KIKKKFPFVDIIF--GTHNIHKFPEYLNRVKEEGKSVIEIWEKEDGIVEGLPIDRK-SKVKAFVTIMYGCNNFCTYCIVP 167 (439)
T ss_pred HHHhhCCCceEEE--CCCCHHHHHHHHHHHhcCCCceeeecccccccccccccccC-CCcEEEEEHHhCcCCCCCCCCcc
Confidence 4444567899998 5588888888875421 111100 000 00000 011 34556778899999999999998
Q ss_pred C--CCCCCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCC-CC-ChhHHHHHHHHHHhhCCCcEEEEEc--CCCcCcHHH
Q psy2895 82 H--GRPDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLH-DG-GSSHFVSCIKHIRKLSTKIKIEILI--PDFRNQINH 155 (293)
Q Consensus 82 ~--~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~-~~-~~~~~~~ll~~i~~~~~~~~i~~~~--~~~~~~~~e 155 (293)
. ++.+.+++++|+++++.+.+.|+++|+|+|++...+. +. ....+.++++.+.+.....++++.+ |+.++ ++
T Consensus 168 ~~~g~~Rsr~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~P~~i~--~e 245 (439)
T PRK14328 168 YVRGRERSRKPEDIIAEIKELVSEGYKEVTLLGQNVNSYGKDLEEKIDFADLLRRVNEIDGLERIRFMTSHPKDLS--DD 245 (439)
T ss_pred cccCCcccCCHHHHHHHHHHHHHCCCcEEEEeccccCcCCcCCCCCcCHHHHHHHHHhcCCCcEEEEecCChhhcC--HH
Confidence 6 3447789999999999999999999999998753331 10 1135778888887642223577654 55455 78
Q ss_pred HHHHHHHcC--CCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHHHHHh
Q psy2895 156 VLKIFKQAL--PDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHDMRN 231 (293)
Q Consensus 156 ~l~~l~~aG--~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~~l~~ 231 (293)
.++.|+++| +.++++++|| ++++++.|+|+++.+++++.++.++++.|++.+.+++|+|+ |||++|+.++++++++
T Consensus 246 ll~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i~i~~d~IvG~PgET~ed~~~tl~~i~~ 325 (439)
T PRK14328 246 LIEAIADCDKVCEHIHLPVQSGSNRILKKMNRHYTREYYLELVEKIKSNIPDVAITTDIIVGFPGETEEDFEETLDLVKE 325 (439)
T ss_pred HHHHHHhCCCcCceeeeCCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEECCCCCHHHHHHHHHHHHh
Confidence 999999886 8999999999 89999999999999999999999999989999999999999 9999999999999999
Q ss_pred CCCCEEEeecCCCCCCCccc
Q psy2895 232 HNIDILTIGQYLMPSRLHLP 251 (293)
Q Consensus 232 l~~~~i~i~~~~~p~~~~~a 251 (293)
++++.++++.| .|.|++.+
T Consensus 326 l~~~~~~~~~~-sp~pGT~~ 344 (439)
T PRK14328 326 VRYDSAFTFIY-SKRKGTPA 344 (439)
T ss_pred cCCCcccceEe-cCCCCChh
Confidence 99999988744 57776654
No 46
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.95 E-value=2.5e-26 Score=216.27 Aligned_cols=237 Identities=11% Similarity=0.207 Sum_probs=177.2
Q ss_pred cccCCCCceeEeccCChhcHHHHHHHHHhcCch-hhhhhcCCCCcc----ccccCceeEeeeeCcccCCCCcCcccCC--
Q psy2895 10 EILKKPNWIRVKLISNIDNFNKTKNILRANNLV-TVCEEASCPNIG----ECFGRGVATFMIMGSICTRRCKFCNISH-- 82 (293)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~-~l~~~a~~~~~~----~~~~~~~~~~~~~t~~C~~~C~fC~~~~-- 82 (293)
.+++..|++|.++ |+++...+.+++....-. ........+... ..+......++.++.|||++|+||.++.
T Consensus 94 ~~~~~~p~vD~v~--g~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~i~~GC~~~CsFC~ip~~r 171 (448)
T PRK14333 94 SLLRRVPELDLVM--GPQHANRLEDLLEQVDAGNQVVATEEIHILEDITKPRRDSSITAWVNVIYGCNERCTYCVVPSVR 171 (448)
T ss_pred HHHhcCCCCCEEE--CCCCHHHHHHHHHHHhcCCceeecccccccccccccccCCCeeEEEEhhcCCCCCCCCCceeccc
Confidence 4555567899888 447788887777542100 000000000000 0111224556778999999999999986
Q ss_pred CCCCCCChhHHHHHHHHHHHCCCcEEEEeeecCCCC----CC-----CChhHHHHHHHHHHhhCCCcEEEEEc--CCCcC
Q psy2895 83 GRPDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDL----HD-----GGSSHFVSCIKHIRKLSTKIKIEILI--PDFRN 151 (293)
Q Consensus 83 ~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l----~~-----~~~~~~~~ll~~i~~~~~~~~i~~~~--~~~~~ 151 (293)
|+.+++++++|+++++.+.+.|+++|+|+|.+..++ .. .....+.++++.|.+.....++++.+ |+.++
T Consensus 172 G~~rsr~~e~V~~Ei~~l~~~g~kei~l~~~~~~~yg~d~~~~~p~~~~~~~l~~Ll~~i~~~~~~~rir~~~~~p~~~~ 251 (448)
T PRK14333 172 GKEQSRTPEAIRAEIEELAAQGYKEITLLGQNIDAYGRDLPGTTPEGRHQHTLTDLLYYIHDVEGIERIRFATSHPRYFT 251 (448)
T ss_pred CCCcccCHHHHHHHHHHHHHCCCcEEEEEecccchhcCCCCCccccccccccHHHHHHHHHhcCCCeEEEECCCChhhhh
Confidence 444678999999999999999999999998654322 10 01236888998887753223577643 45555
Q ss_pred cHHHHHHHHHHc--CCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHH
Q psy2895 152 QINHVLKIFKQA--LPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIH 227 (293)
Q Consensus 152 ~~~e~l~~l~~a--G~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~ 227 (293)
++.++.++++ |+.++++++|| ++++++.|+|+++.+++++.++.++++.||+.+++++|+|+ |||++++.++++
T Consensus 252 --~eli~~~~~~~~~~~~l~igiQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~p~i~i~~d~IvGfPgET~edf~~tl~ 329 (448)
T PRK14333 252 --ERLIKACAELPKVCEHFHIPFQSGDNEILKAMARGYTHEKYRRIIDKIREYMPDASISADAIVGFPGETEAQFENTLK 329 (448)
T ss_pred --HHHHHHHhcCCcccccccCCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCcEEEeeEEEECCCCCHHHHHHHHH
Confidence 7889999885 58999999999 89999999999999999999999999999999999999999 999999999999
Q ss_pred HHHhCCCCEEEeecCCCCCCCccc
Q psy2895 228 DMRNHNIDILTIGQYLMPSRLHLP 251 (293)
Q Consensus 228 ~l~~l~~~~i~i~~~~~p~~~~~a 251 (293)
++++++++.++++ .+.|.|++.+
T Consensus 330 ~l~~~~~~~~~~~-~~sp~pGT~~ 352 (448)
T PRK14333 330 LVEEIGFDQLNTA-AYSPRPGTPA 352 (448)
T ss_pred HHHHcCCCEEeee-eeecCCCCch
Confidence 9999999999998 5578887665
No 47
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.95 E-value=2e-25 Score=209.67 Aligned_cols=230 Identities=12% Similarity=0.187 Sum_probs=171.5
Q ss_pred CceeEeccCChhcHHHHHHHHHhcC-chhhh-hhcCCCCccccccCceeEeeeeCcccCCCCcCcccCCC--CCCCCChh
Q psy2895 16 NWIRVKLISNIDNFNKTKNILRANN-LVTVC-EEASCPNIGECFGRGVATFMIMGSICTRRCKFCNISHG--RPDPLDIE 91 (293)
Q Consensus 16 ~~~~~~~~~g~~~~~~~~~l~~~~~-~~~l~-~~a~~~~~~~~~~~~~~~~~~~t~~C~~~C~fC~~~~~--~~~~~~~e 91 (293)
+.+|.++ |+.++.++.+++.... ..... .............+....++.+++|||++|+||.++.. +.+.++++
T Consensus 93 ~~vd~v~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~isrGC~~~CsfC~~p~~~g~~~sr~~e 170 (440)
T PRK14334 93 FGVDVLL--GPGALTDIGKALEANERFWGLQFKDELHDHIPPPPQGKLSAHLTIMRGCNHHCTYCIVPTTRGPEVSRHPD 170 (440)
T ss_pred CCCCEEE--CCCCHHHHHHHHHhhccccccccccccccccccccCCCeEEEEEeccCCCCCCcCCCcchhcCCCccCCHH
Confidence 4788888 5567888887764421 00000 00000001111223466788889999999999999873 33578999
Q ss_pred HHHHHHHHHHHCCCcEEEEeeecCCCCC-C-CChhHHHHHHHHHHhhCCCcEEEEEc--CCCcCcHHHHHHHHHH--cCC
Q psy2895 92 EPKKIAYTINKLKLNYVVITSVNRDDLH-D-GGSSHFVSCIKHIRKLSTKIKIEILI--PDFRNQINHVLKIFKQ--ALP 165 (293)
Q Consensus 92 ei~~~~~~~~~~G~~~i~l~gg~~~~l~-~-~~~~~~~~ll~~i~~~~~~~~i~~~~--~~~~~~~~e~l~~l~~--aG~ 165 (293)
+|+++++.+.+.|+++|+|+|.+...+. + .....+.++++.+.+.. ..++++.+ |..++ ++.++.|++ +|+
T Consensus 171 ~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~~l~~~~-i~~ir~~~~~p~~i~--~ell~~l~~~~~g~ 247 (440)
T PRK14334 171 LILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLRLVGASG-IPRVKFTTSHPMNFT--DDVIAAMAETPAVC 247 (440)
T ss_pred HHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHHHHHhcC-CcEEEEccCCcccCC--HHHHHHHHhcCcCC
Confidence 9999999999999999999986532221 0 01235778888876642 12566643 44455 889999998 459
Q ss_pred Ceeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHHHHHhCCCCEEEeecCC
Q psy2895 166 DVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHDMRNHNIDILTIGQYL 243 (293)
Q Consensus 166 ~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~~l~~l~~~~i~i~~~~ 243 (293)
.++++++|| ++++++.|+|+++.+++++.++.++++.|++.+++++|+|+ |||.+|+.++++++++++++.++++. +
T Consensus 248 ~~l~igvQSgs~~vLk~m~R~~~~~~~~~~v~~lr~~~~~i~i~~d~IvG~PgEt~ed~~~tl~~i~~l~~~~i~~f~-y 326 (440)
T PRK14334 248 EYIHLPVQSGSDRVLRRMAREYRREKYLERIAEIREALPDVVLSTDIIVGFPGETEEDFQETLSLYDEVGYDSAYMFI-Y 326 (440)
T ss_pred CeEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEECCCCCHHHHHHHHHHHHhcCCCEeeeeE-e
Confidence 999999999 89999999999999999999999999966677899999999 99999999999999999999999984 4
Q ss_pred CCCCCccc
Q psy2895 244 MPSRLHLP 251 (293)
Q Consensus 244 ~p~~~~~a 251 (293)
.|.|++.+
T Consensus 327 sp~pGT~~ 334 (440)
T PRK14334 327 SPRPGTPS 334 (440)
T ss_pred eCCCCChh
Confidence 68777654
No 48
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.94 E-value=3.5e-25 Score=208.60 Aligned_cols=235 Identities=14% Similarity=0.283 Sum_probs=175.0
Q ss_pred ccCCCCceeEeccCChhcHHHHHHHHHhcC-ch-hhhhhcCCCCccc--cc----cCceeEeeeeCcccCCCCcCcccCC
Q psy2895 11 ILKKPNWIRVKLISNIDNFNKTKNILRANN-LV-TVCEEASCPNIGE--CF----GRGVATFMIMGSICTRRCKFCNISH 82 (293)
Q Consensus 11 ~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~-~~-~l~~~a~~~~~~~--~~----~~~~~~~~~~t~~C~~~C~fC~~~~ 82 (293)
+++.-+++|.++ |.+....+.+++.... -. ...... .+.... .+ .++...++.+++|||++|+||..+.
T Consensus 92 ~~~~~~~vD~vv--~~e~~~~~~~ll~~~~~~~~~~~~~~-~~~~~~~d~~p~~~~~~~~~~i~isrGCp~~CsFC~~p~ 168 (444)
T PRK14325 92 ILKRAPYVDIVF--GPQTLHRLPEMIARARRGGKPVVDIS-FPEIEKFDHLPEPRAEGPSAFVSIMEGCDKYCTFCVVPY 168 (444)
T ss_pred HHhhCCCCcEEE--CCCCHHHHHHHHHHHHhcCCceeeec-ccccccccccccccCCCceEEEEhhhCCCCCCCccccCc
Confidence 444456888887 4367777777764320 00 000000 000000 01 1234556777999999999999986
Q ss_pred --CCCCCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCC----CChhHHHHHHHHHHhhCCCcEEEEEc--CCCcCcHH
Q psy2895 83 --GRPDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHD----GGSSHFVSCIKHIRKLSTKIKIEILI--PDFRNQIN 154 (293)
Q Consensus 83 --~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~----~~~~~~~~ll~~i~~~~~~~~i~~~~--~~~~~~~~ 154 (293)
++.+.+++++|+++++.+.+.|+++|+|++.+...+.. .....+.++++.+.+..+..++++.+ |..++ +
T Consensus 169 ~~G~~~sr~~e~Iv~Ei~~l~~~g~~ei~l~d~~~~~y~~~~~~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~--~ 246 (444)
T PRK14325 169 TRGEEVSRPVDDVLAEVAQLAEQGVREITLLGQNVNAYRGEGPDGEIADFAELLRLVAAIDGIERIRYTTSHPRDFT--D 246 (444)
T ss_pred ccCCcccCCHHHHHHHHHHHHHCCCcEEEEEeeccccccCCCCCCCcchHHHHHHHHHhcCCccEEEEccCCcccCC--H
Confidence 33457899999999999999999999999887433311 11247889999887642222566643 44455 8
Q ss_pred HHHHHHHHcC--CCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHHHHH
Q psy2895 155 HVLKIFKQAL--PDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHDMR 230 (293)
Q Consensus 155 e~l~~l~~aG--~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~~l~ 230 (293)
+.++.|+++| +.++++++|| ++++++.|+|+++.+++.++++.++++.||+.+++++|+|+ |||++++.+++++++
T Consensus 247 ell~~l~~~~~~~~~l~igiqSgs~~vLk~m~R~~~~~~~~~~i~~lr~~~~gi~v~~~~IvG~PgET~ed~~~tl~~i~ 326 (444)
T PRK14325 247 DLIEAYADLPKLVPFLHLPVQSGSDRILKAMNRGHTALEYKSIIRKLRAARPDIAISSDFIVGFPGETDEDFEATMKLIE 326 (444)
T ss_pred HHHHHHHcCCcccCceeccCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEEeeEEEECCCCCHHHHHHHHHHHH
Confidence 8999999875 8999999999 89999999999999999999999999988999999999999 999999999999999
Q ss_pred hCCCCEEEeecCCCCCCCccc
Q psy2895 231 NHNIDILTIGQYLMPSRLHLP 251 (293)
Q Consensus 231 ~l~~~~i~i~~~~~p~~~~~a 251 (293)
+++++.++++ .+.|.|++.+
T Consensus 327 ~~~~~~~~~~-~~sp~pGT~~ 346 (444)
T PRK14325 327 DVGFDQSFSF-IYSPRPGTPA 346 (444)
T ss_pred hcCCCeeeee-eccCCCCCch
Confidence 9999999988 4468776654
No 49
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=99.94 E-value=4.1e-25 Score=207.38 Aligned_cols=235 Identities=14% Similarity=0.234 Sum_probs=175.6
Q ss_pred cCCCCceeEeccCChhcHHHHHHHHHhcCch--hhhhhc--CCCCc-cccccCceeEeeeeCcccCCCCcCcccCC--CC
Q psy2895 12 LKKPNWIRVKLISNIDNFNKTKNILRANNLV--TVCEEA--SCPNI-GECFGRGVATFMIMGSICTRRCKFCNISH--GR 84 (293)
Q Consensus 12 ~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~--~l~~~a--~~~~~-~~~~~~~~~~~~~~t~~C~~~C~fC~~~~--~~ 84 (293)
++.-+.+|.++ |..++..+.+++...... .+.... ....+ ...+.++...++.+++|||++|+||..+. ++
T Consensus 87 ~~~~~~vd~vv--g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~srGC~~~CsfC~~~~~~g~ 164 (429)
T TIGR00089 87 LKRIPEVDIVL--GPQNKERIPEAIESAEQEKQVVFNISKDVYEELPRPRSFGKTRAFLKIQEGCDKFCTYCIVPYARGR 164 (429)
T ss_pred HhhCCCCCEEE--CCCCHHHHHHHHHHHhcCCceeccccccchhcccccccCCCeEEEEEHHhCcCCCCCcCceecccCC
Confidence 33445788877 446777777777542100 011000 00000 01122345567778999999999999986 44
Q ss_pred CCCCChhHHHHHHHHHHHCCCcEEEEeeecCCCC-CCC-ChhHHHHHHHHHHhhCCCcEEEEEc--CCCcCcHHHHHHHH
Q psy2895 85 PDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDL-HDG-GSSHFVSCIKHIRKLSTKIKIEILI--PDFRNQINHVLKIF 160 (293)
Q Consensus 85 ~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l-~~~-~~~~~~~ll~~i~~~~~~~~i~~~~--~~~~~~~~e~l~~l 160 (293)
.+.+++++|+++++.+.+.|+++|+|+|.+...+ .+. +...+.++++.+++.....++++.+ |..++ ++.++.|
T Consensus 165 ~r~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~g~~~i~~~~~~p~~i~--~ell~~m 242 (429)
T TIGR00089 165 ERSRPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDLKGETNLADLLRELSKIDGIERIRFGSSHPDDVT--DDLIELI 242 (429)
T ss_pred CCCCCHHHHHHHHHHHHHCCCceEEEEeeccccccCCCCCCcCHHHHHHHHhcCCCCCEEEECCCChhhcC--HHHHHHH
Confidence 4678999999999999999999999998764322 110 1245889999987753233566643 44445 8899999
Q ss_pred HHcC--CCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHHHHHhCCCCE
Q psy2895 161 KQAL--PDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHDMRNHNIDI 236 (293)
Q Consensus 161 ~~aG--~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~~l~~l~~~~ 236 (293)
+++| +.++++++|| ++++++.|+|+++.+++++.++.++++.|++.+.+++|+|+ |||.+++.++++++++++++.
T Consensus 243 ~~~~~~~~~l~igiES~s~~vLk~m~R~~~~~~~~~~i~~lr~~~~~i~i~~~~IvG~PgET~ed~~~tl~~i~~~~~~~ 322 (429)
T TIGR00089 243 AENPKVCKHLHLPVQSGSDRILKRMNRKYTREEYLDIVEKIRAKIPDAAITTDIIVGFPGETEEDFEETLDLVEEVKFDK 322 (429)
T ss_pred HhCCCccCceeeccccCChHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEEeeEEEECCCCCHHHHHHHHHHHHhcCCCE
Confidence 9984 9999999999 89999999999999999999999999966699999999999 999999999999999999999
Q ss_pred EEeecCCCCCCCccc
Q psy2895 237 LTIGQYLMPSRLHLP 251 (293)
Q Consensus 237 i~i~~~~~p~~~~~a 251 (293)
++++ .+.|.+++.+
T Consensus 323 ~~~~-~~sp~pgT~~ 336 (429)
T TIGR00089 323 LHSF-IYSPRPGTPA 336 (429)
T ss_pred eecc-ccCCCCCCch
Confidence 9998 5567776654
No 50
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=99.94 E-value=1.8e-25 Score=200.19 Aligned_cols=196 Identities=20% Similarity=0.267 Sum_probs=147.4
Q ss_pred CchhhhhhcCCCCccc-cc-cCceeEe--eee-CcccCCCCcCcccCCCC------CCCCChhHHHHHHHHHHHCCCcEE
Q psy2895 40 NLVTVCEEASCPNIGE-CF-GRGVATF--MIM-GSICTRRCKFCNISHGR------PDPLDIEEPKKIAYTINKLKLNYV 108 (293)
Q Consensus 40 ~~~~l~~~a~~~~~~~-~~-~~~~~~~--~~~-t~~C~~~C~fC~~~~~~------~~~~~~eei~~~~~~~~~~G~~~i 108 (293)
++.++...|. ..++ .+ ++.+.+. +.+ |++|+++|.||+++... .+.+++++++++++.+.+.|++.+
T Consensus 5 ~~~~l~~~a~--~~~~~~~~~~~v~~~~~~~i~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~~ 82 (296)
T TIGR00433 5 PLLDLLYEAF--QIHRKHFDPRKVQLCTIMNIKSGGCPEDCKYCSQSSRSKTGLPIERLKKVDEVLEEARKAKAAGATRF 82 (296)
T ss_pred cHHHHHHHHH--HHHHHhcCCCEEEEEEEEecccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEE
Confidence 3444445554 3343 34 4443332 333 89999999999997643 245889999999999999999887
Q ss_pred EE-eeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEc-CCCcCcHHHHHHHHHHcCCCeeeeccccchHHHhhcCCCC
Q psy2895 109 VI-TSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILI-PDFRNQINHVLKIFKQALPDVLNHNIETVPRLYKKVRPGS 186 (293)
Q Consensus 109 ~l-~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~-~~~~~~~~e~l~~l~~aG~~~i~~~less~~~~~~i~~~~ 186 (293)
.+ ++|..+.. ....+++.++.+.+++. ++.++. .+.++ +|.++.|+++|++++.+++|+++++++++++++
T Consensus 83 ~l~~~g~~~~~-~~~~~~~~~i~~~~~~~----~i~~~~~~g~~~--~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~ 155 (296)
T TIGR00433 83 CLVASGRGPKD-REFMEYVEAMVQIVEEM----GLKTCATLGLLD--PEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTH 155 (296)
T ss_pred EEEEecCCCCh-HHHHHHHHHHHHHHHhC----CCeEEecCCCCC--HHHHHHHHHcCCCEEEEcccCCHHHHhhccCCC
Confidence 54 44543321 11123444444444432 344433 36666 899999999999999999997799999999889
Q ss_pred CHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEeecCCCCCC
Q psy2895 187 DYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIGQYLMPSR 247 (293)
Q Consensus 187 ~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~ 247 (293)
++++++++++.++++ |+.+++++|+|++||.+|+.++++++++++++.++++ .+.|.+
T Consensus 156 s~~~~~~ai~~l~~~--Gi~v~~~~i~Gl~et~~d~~~~~~~l~~l~~~~i~l~-~l~p~~ 213 (296)
T TIGR00433 156 TYDDRVDTLENAKKA--GLKVCSGGIFGLGETVEDRIGLALALANLPPESVPIN-FLVKIK 213 (296)
T ss_pred CHHHHHHHHHHHHHc--CCEEEEeEEEeCCCCHHHHHHHHHHHHhCCCCEEEee-eeEEcC
Confidence 999999999999999 9999999999999999999999999999999999887 556655
No 51
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=99.94 E-value=5.2e-26 Score=205.47 Aligned_cols=187 Identities=20% Similarity=0.283 Sum_probs=147.2
Q ss_pred EeeeeCcccCCCCcCcccCCCCC----CCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCC-------------CCChhH
Q psy2895 63 TFMIMGSICTRRCKFCNISHGRP----DPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLH-------------DGGSSH 125 (293)
Q Consensus 63 ~~~~~t~~C~~~C~fC~~~~~~~----~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~-------------~~~~~~ 125 (293)
.++.+||+|+.+|.||+|+..+. ..+++|+|++.++++.+.|+++++++||..|+.. ....++
T Consensus 6 ~~i~~tn~C~~~C~fCaf~~~~g~~~~~~l~~eeI~~~a~~~~~~G~~ei~l~~G~~p~~~~~~~~~~l~~~~~~~~~~~ 85 (322)
T TIGR03550 6 VFIPLTRLCRNRCGYCTFRRPPGELEAALLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPEAREWLAEMGYDSTLEY 85 (322)
T ss_pred EEeccccCcCCCCccCCccccCCCcccccCCHHHHHHHHHHHHHCCCCEEEEecCCCccccHHHHHHHHHhcCCccHHHH
Confidence 45667999999999999987542 2689999999999999999999999999876542 011368
Q ss_pred HHHHHHHHHhhCCCcEEEEE-cCCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcC----CCCCHHHHHHHHHHHH
Q psy2895 126 FVSCIKHIRKLSTKIKIEIL-IPDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVR----PGSDYKHSLNLLKNFK 199 (293)
Q Consensus 126 ~~~ll~~i~~~~~~~~i~~~-~~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~----~~~~~e~~l~~i~~~~ 199 (293)
+.++++.+++.. .+..+ +++.++ ++.++.|+++|++ +++++|+ ++++++.++ +++++++++++++.++
T Consensus 86 ~~~~~~~i~~e~---~~~~~~~~g~lt--~e~l~~Lk~aG~~-~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~i~~a~ 159 (322)
T TIGR03550 86 LRELCELALEET---GLLPHTNPGVMS--RDELARLKPVNAS-MGLMLETTSERLCKGEAHYGSPGKDPAVRLETIEDAG 159 (322)
T ss_pred HHHHHHHHHHhc---CCccccCCCCCC--HHHHHHHHhhCCC-CCcchhhhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 888888888642 22222 246676 8999999999986 5888999 577665554 4567899999999999
Q ss_pred HhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCC-----CCEEEeecCCCCCC----------------CccccccccCh
Q psy2895 200 KLYPNILTKSGIMVGLGENDEEILTVIHDMRNHN-----IDILTIGQYLMPSR----------------LHLPVHRYLHP 258 (293)
Q Consensus 200 ~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~-----~~~i~i~~~~~p~~----------------~~~a~~r~~~p 258 (293)
++ |+.+++++|+|+|||++|+.+++..+++++ +..+.+++| .|.+ +++|++|+++|
T Consensus 160 ~~--Gi~~~s~~i~G~gEt~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f-~P~~gTpl~~~~~~s~~e~lr~iAv~Rl~l~ 236 (322)
T TIGR03550 160 RL--KIPFTTGILIGIGETREERAESLLAIRELHERYGHIQEVIVQNF-RAKPGTPMENHPEPSLEEMLRTVAVARLILP 236 (322)
T ss_pred Hc--CCCccceeeEeCCCCHHHHHHHHHHHHHHHHHcCCCeEEecCcc-ccCCCCCccCCCCCCHHHHHHHHHHHHHHcC
Confidence 99 999999999999999999999999999998 555555434 4432 56777788775
No 52
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=99.93 E-value=1.8e-24 Score=202.18 Aligned_cols=191 Identities=13% Similarity=0.273 Sum_probs=152.8
Q ss_pred ceeEeeeeCcccCCCCcCcccCCC--CCCCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhC
Q psy2895 60 GVATFMIMGSICTRRCKFCNISHG--RPDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLS 137 (293)
Q Consensus 60 ~~~~~~~~t~~C~~~C~fC~~~~~--~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~ 137 (293)
....++.+++|||++|+||..+.. +.+.+++|+|+++++.+.+.|+++|+|+|.+...+......++.++++.+.+..
T Consensus 132 ~~~~~i~isrGC~~~CsfC~ip~~~G~~rsr~~e~Vl~Ei~~l~~~G~~ei~l~g~d~~~yg~d~~~~l~~Ll~~l~~i~ 211 (420)
T TIGR01578 132 PLIEIIPINQGCLGNCSYCITKHARGKLASYPPEKIVEKARQLVAEGCKEIWITSQDTGAYGRDIGSRLPELLRLITEIP 211 (420)
T ss_pred CcEEEEEEccCCCCCCCCCccccCCCCcccCCHHHHHHHHHHHHHCCCeEEEEEeeccccccCCCCcCHHHHHHHHHhCC
Confidence 356678889999999999999863 346789999999999999999999999998753331100134777787776543
Q ss_pred CCcEEEEEc--CC-CcCcHHHHHHHHHHcC-CCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEE
Q psy2895 138 TKIKIEILI--PD-FRNQINHVLKIFKQAL-PDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIM 212 (293)
Q Consensus 138 ~~~~i~~~~--~~-~~~~~~e~l~~l~~aG-~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~i 212 (293)
...++++.+ |. +..-.++.++.++..+ +..+++++|| ++++++.|+|+++.+++.+.++.+++..||+.+.+++|
T Consensus 212 ~~~~ir~~~~~p~~~~~~~~~l~~~~~~~~~~~~l~iglQSgsd~iL~~m~R~~~~~~~~~~i~~i~~~~~~i~i~~~~I 291 (420)
T TIGR01578 212 GEFRLRVGMMNPKNVLEILDELANVYQHEKVYKFLHLPVQSGSDSVLKEMKREYTVSDFEDIVDKFRERFPDLTLSTDII 291 (420)
T ss_pred CCcEEEEcCCCCCcccccCHHHHHHHhcccccCceEeCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEeeEE
Confidence 334677643 42 1111167777776544 6889999999 89999999999999999999999999999999999999
Q ss_pred eec-CCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCccc
Q psy2895 213 VGL-GENDEEILTVIHDMRNHNIDILTIGQYLMPSRLHLP 251 (293)
Q Consensus 213 vG~-gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~~a 251 (293)
+|+ |||++++.++++++++++++.+++++ +.|.|++.+
T Consensus 292 vG~PgET~ed~~~t~~~~~~~~~~~i~~~~-~~p~pGT~~ 330 (420)
T TIGR01578 292 VGFPTETDDDFEETMELLRKYRPEKINITK-FSPRPGTPA 330 (420)
T ss_pred EeCCCCCHHHHHHHHHHHHHhCCCEEEEEE-eeCCCCCcc
Confidence 999 99999999999999999999999984 467776654
No 53
>PRK09234 fbiC FO synthase; Reviewed
Probab=99.93 E-value=6.2e-26 Score=224.92 Aligned_cols=223 Identities=18% Similarity=0.295 Sum_probs=173.3
Q ss_pred hcHHHHHHHHH--hcCchhhhhhcCCCCccccccCc-----eeE-----eeeeCcccCCCCcCcccCCCCC----CCCCh
Q psy2895 27 DNFNKTKNILR--ANNLVTVCEEASCPNIGECFGRG-----VAT-----FMIMGSICTRRCKFCNISHGRP----DPLDI 90 (293)
Q Consensus 27 ~~~~~~~~l~~--~~~~~~l~~~a~~~~~~~~~~~~-----~~~-----~~~~t~~C~~~C~fC~~~~~~~----~~~~~ 90 (293)
-+.+++..|+. ..++.+|+..|+ .+|+.+.++ ..+ ++.+||.|..+|.||+|+.... ..+++
T Consensus 27 ls~eEa~~Ll~~~~~dl~~L~~~A~--~vR~~~~G~~~~~~~Vty~~n~~In~Tn~C~~~C~YCaF~~~~~~~~~~~ls~ 104 (843)
T PRK09234 27 LDVDEAAVLLTARGDDLADLCASAA--RVRDAGLGAAGRPGVVTYSRKVFIPLTRLCRDRCHYCTFATVPGKLEAAYLSP 104 (843)
T ss_pred CCHHHHHHHhcCCCccHHHHHHHHH--HHHHHHcCCcccCceEEEEeEEEecCCCCCCCCCCcCCCccCCCCCccccCCH
Confidence 56778888873 356778889998 788754333 333 3445999999999999986421 35899
Q ss_pred hHHHHHHHHHHHCCCcEEEEeeecCCCCC-------------CCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHH
Q psy2895 91 EEPKKIAYTINKLKLNYVVITSVNRDDLH-------------DGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVL 157 (293)
Q Consensus 91 eei~~~~~~~~~~G~~~i~l~gg~~~~l~-------------~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l 157 (293)
|||++.++++.+.|++++.++||+.|+.. ....+++.++++.|++..+ ...++. .+.++ .+.+
T Consensus 105 eEIl~~a~~~~~~G~~e~l~t~G~~P~~~~~~~~~~l~~~gy~~~~ey~~~~~~~ik~~~g-l~p~i~-~G~ls--~~E~ 180 (843)
T PRK09234 105 DEVLDIARAGAAAGCKEALFTLGDRPEDRWPEAREWLDERGYDSTLDYVRAMAIRVLEETG-LLPHLN-PGVMS--WSEL 180 (843)
T ss_pred HHHHHHHHHHHHCCCCEEEEecCCCCccccccccccccccccccHHHHHHHHHHHHHHhcC-CCceee-eCCCC--HHHH
Confidence 99999999999999999999999976542 1136899999999987531 112221 24455 7889
Q ss_pred HHHHHcCCCeeeecccc-chHHHhh------cCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHH
Q psy2895 158 KIFKQALPDVLNHNIET-VPRLYKK------VRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMR 230 (293)
Q Consensus 158 ~~l~~aG~~~i~~~les-s~~~~~~------i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~ 230 (293)
+.|+++|++ +.+++|+ ++++|+. ++|++.+++++++++.++++ |+++++++|+|+|||.+|+.+++..|+
T Consensus 181 ~~Lk~~g~s-~gl~lEt~~~~l~~~~g~~h~~~P~K~~~~RL~ti~~A~~l--Gi~~tsG~L~GiGEt~edRve~L~~LR 257 (843)
T PRK09234 181 ARLKPVAPS-MGMMLETTSRRLFEEKGGPHYGSPDKDPAVRLRVLEDAGRL--SVPFTTGILIGIGETLAERAESLFAIR 257 (843)
T ss_pred HHHHHhcCc-CCCCHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHc--CCCccceEEEECCCCHHHHHHHHHHHH
Confidence 999999997 7789999 7888743 44777899999999999999 999999999999999999999999999
Q ss_pred hCC-----CCEEEeecCCCCCC----------------CccccccccChh
Q psy2895 231 NHN-----IDILTIGQYLMPSR----------------LHLPVHRYLHPK 259 (293)
Q Consensus 231 ~l~-----~~~i~i~~~~~p~~----------------~~~a~~r~~~p~ 259 (293)
+++ ++.+.+.+|. |.+ +++|++|+++|.
T Consensus 258 ~Lq~~~g~~~evi~~~F~-p~~gT~l~~~~~~s~~e~Lr~iAvaRliL~~ 306 (843)
T PRK09234 258 KLHREYGHIQEVIVQNFR-AKPDTAMAGVPDAGLEELLATIAVARLVLGP 306 (843)
T ss_pred HhhHhhCCCcEEeecccc-cCCCCCCCCCCCCCHHHHHHHHHHHHHhCCC
Confidence 995 5667666565 321 577888887754
No 54
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=99.93 E-value=2.3e-24 Score=196.63 Aligned_cols=217 Identities=12% Similarity=0.187 Sum_probs=164.9
Q ss_pred eEeeeeCcccCCCCcCcccCCCCCC--C-----CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHH
Q psy2895 62 ATFMIMGSICTRRCKFCNISHGRPD--P-----LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIR 134 (293)
Q Consensus 62 ~~~~~~t~~C~~~C~fC~~~~~~~~--~-----~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~ 134 (293)
.+|+.+ +.|+.+|.||.+...... . .-.+++..+++.+....++.|++.||+|..++ .+.+.++++.++
T Consensus 8 ~lYiHi-PFC~~kC~yC~f~~~~~~~~~~~~~~~~~~~l~~ei~~~~~~~~~tiy~GGGTPs~L~---~~~l~~ll~~i~ 83 (353)
T PRK05904 8 HLYIHI-PFCQYICTFCDFKRILKTPQTKKIFKDFLKNIKMHIKNFKIKQFKTIYLGGGTPNCLN---DQLLDILLSTIK 83 (353)
T ss_pred EEEEEe-CCccCcCCCCCCeeccCCcccHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCccccCC---HHHHHHHHHHHH
Confidence 344432 789999999999763111 1 11344444444332234678999999864443 578888999998
Q ss_pred hhCC-CcEEEEEc-CCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCce-eeEe
Q psy2895 135 KLST-KIKIEILI-PDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNIL-TKSG 210 (293)
Q Consensus 135 ~~~~-~~~i~~~~-~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~-~~~~ 210 (293)
+..+ +..+++.+ |+.++ +|.++.|+++|++++++|+|| ++++++.|+|+++.++..++++.++++ |+. ++++
T Consensus 84 ~~~~~~~eitiE~nP~~lt--~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~~~~~~~~~ai~~lr~~--G~~~v~~d 159 (353)
T PRK05904 84 PYVDNNCEFTIECNPELIT--QSQINLLKKNKVNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKN--GIYNISCD 159 (353)
T ss_pred HhcCCCCeEEEEeccCcCC--HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHc--CCCcEEEE
Confidence 7653 34566644 66666 899999999999999999999 799999999999999999999999999 985 9999
Q ss_pred EEeec-CCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCccccccc---cChhH----HHHHHHHHHHhcccchhccccc
Q psy2895 211 IMVGL-GENDEEILTVIHDMRNHNIDILTIGQYLMPSRLHLPVHRY---LHPKF----FEKFKKIAYKLGFKNVLVGSMI 282 (293)
Q Consensus 211 ~ivG~-gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~~a~~r~---~~p~~----~~~~~~~~~~~G~~~~~~~~~~ 282 (293)
+|+|+ |||.+++.++++++.++++++++++ .+.+.+++.. .+. +.++. +..+.+...+.|+.+|++++|+
T Consensus 160 lI~GlPgqt~e~~~~tl~~~~~l~p~~is~y-~L~~~~gT~l-~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yeisnfa 237 (353)
T PRK05904 160 FLYCLPILKLKDLDEVFNFILKHKINHISFY-SLEIKEGSIL-KKYHYTIDEDKEAEQLNYIKAKFNKLNYKRYEVSNWT 237 (353)
T ss_pred EeecCCCCCHHHHHHHHHHHHhcCCCEEEEE-eeEecCCChH-hhcCCCCChHHHHHHHHHHHHHHHHcCCcEEechhhc
Confidence 99999 9999999999999999999999998 4455554322 221 22222 4556677788999999999999
Q ss_pred c-ccccc
Q psy2895 283 R-SSYMA 288 (293)
Q Consensus 283 ~-~~~~~ 288 (293)
| ++|..
T Consensus 238 ~~~~~~~ 244 (353)
T PRK05904 238 NNFKYIS 244 (353)
T ss_pred CCCCccc
Confidence 9 56654
No 55
>PRK05660 HemN family oxidoreductase; Provisional
Probab=99.93 E-value=6.6e-24 Score=195.77 Aligned_cols=218 Identities=12% Similarity=0.145 Sum_probs=164.5
Q ss_pred eEeeeeCcccCCCCcCcccCCCCC-CCCChhH-HHHHHHHHHH-------CCCcEEEEeeecCCCCCCCChhHHHHHHHH
Q psy2895 62 ATFMIMGSICTRRCKFCNISHGRP-DPLDIEE-PKKIAYTINK-------LKLNYVVITSVNRDDLHDGGSSHFVSCIKH 132 (293)
Q Consensus 62 ~~~~~~t~~C~~~C~fC~~~~~~~-~~~~~ee-i~~~~~~~~~-------~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~ 132 (293)
.+|+. -+.|+.+|.||.+.+... ...+.++ +...++++.. .+++.|+|+||+|..++ .+.+.++++.
T Consensus 8 ~lYiH-iPFC~~~C~yC~f~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~v~ti~~GGGtPs~l~---~~~l~~ll~~ 83 (378)
T PRK05660 8 SLYIH-IPWCVQKCPYCDFNSHALKGEVPEDEYVDHLLADLDADLPLVQGREVHSIFIGGGTPSLFS---AEAIQRLLDG 83 (378)
T ss_pred EEEEE-eCCccCcCCCCCCeecCCCCcCCHHHHHHHHHHHHHHHhHhccCCceeEEEeCCCccccCC---HHHHHHHHHH
Confidence 34443 378999999999976421 2233333 2222233221 46789999999964333 5789999999
Q ss_pred HHhhCC---CcEEEEEc-CCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCce-
Q psy2895 133 IRKLST---KIKIEILI-PDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNIL- 206 (293)
Q Consensus 133 i~~~~~---~~~i~~~~-~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~- 206 (293)
+++.++ +..+++.+ |+.++ .+.++.|+++|++++++|+|| ++++++.++|.++.++.+++++.++++ |+.
T Consensus 84 l~~~~~~~~~~eit~e~np~~l~--~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~--G~~~ 159 (378)
T PRK05660 84 VRARLPFAPDAEITMEANPGTVE--ADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGL--GLRS 159 (378)
T ss_pred HHHhCCCCCCcEEEEEeCcCcCC--HHHHHHHHHcCCCEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHc--CCCe
Confidence 988653 34677755 56676 899999999999999999999 799999999999999999999999999 995
Q ss_pred eeEeEEeec-CCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCcccc---ccccChhH----HHHHHHHHHHhcccchhc
Q psy2895 207 TKSGIMVGL-GENDEEILTVIHDMRNHNIDILTIGQYLMPSRLHLPV---HRYLHPKF----FEKFKKIAYKLGFKNVLV 278 (293)
Q Consensus 207 ~~~~~ivG~-gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~~a~---~r~~~p~~----~~~~~~~~~~~G~~~~~~ 278 (293)
+++++|+|+ |+|.+++.++++.+.++++++++++ -+.+.+++.-. ..+..++. +....+.....|+.++++
T Consensus 160 v~~dli~Glpgqt~~~~~~~l~~~~~l~p~~is~y-~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yei 238 (378)
T PRK05660 160 FNLDLMHGLPDQSLEEALDDLRQAIALNPPHLSWY-QLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQQYET 238 (378)
T ss_pred EEEEeecCCCCCCHHHHHHHHHHHHhcCCCeEEee-ccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCCcEeec
Confidence 789999999 9999999999999999999999997 44444432111 11222222 344556677789999999
Q ss_pred cccccccccc
Q psy2895 279 GSMIRSSYMA 288 (293)
Q Consensus 279 ~~~~~~~~~~ 288 (293)
++|+|+.+.+
T Consensus 239 ~~fa~~~~~~ 248 (378)
T PRK05660 239 SAYAKPGYQC 248 (378)
T ss_pred ccccCCChhH
Confidence 9999988754
No 56
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=99.93 E-value=4.8e-24 Score=194.86 Aligned_cols=210 Identities=13% Similarity=0.127 Sum_probs=161.2
Q ss_pred cccCCCCcCcccCCCC-CCCC---ChhHHHHHHHHHHH----CCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhC-CC
Q psy2895 69 SICTRRCKFCNISHGR-PDPL---DIEEPKKIAYTINK----LKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLS-TK 139 (293)
Q Consensus 69 ~~C~~~C~fC~~~~~~-~~~~---~~eei~~~~~~~~~----~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~-~~ 139 (293)
++|+.+|.||.++... ...+ ..+.+.++++...+ .+++.|+|+||+|..++ .+.+.++++.|++.. ++
T Consensus 8 PFC~~~C~yC~f~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~v~~iyfGGGTPs~l~---~~~l~~ll~~i~~~~~~~ 84 (350)
T PRK08446 8 PFCESKCGYCAFNSYENKHDLKKEYMQALCLDLKFELEQFTDEKIESVFIGGGTPSTVS---AKFYEPIFEIISPYLSKD 84 (350)
T ss_pred CCccCcCCCCCCcCcCCCcccHHHHHHHHHHHHHHHHhhccCCceeEEEECCCccccCC---HHHHHHHHHHHHHhcCCC
Confidence 7999999999997642 1222 24555555554322 26789999999864333 578888888887752 34
Q ss_pred cEEEEEc-CCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCc-eeeEeEEeec-
Q psy2895 140 IKIEILI-PDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNI-LTKSGIMVGL- 215 (293)
Q Consensus 140 ~~i~~~~-~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi-~~~~~~ivG~- 215 (293)
..+++.+ |+.++ ++.++.|+++|++++++|+|| ++++++.++|.++.++..++++.++++ |+ .+++++|+|+
T Consensus 85 ~eitiE~nP~~~~--~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~--g~~~v~iDli~GlP 160 (350)
T PRK08446 85 CEITTEANPNSAT--KAWLKGMKNLGVNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKA--GFENISIDLIYDTP 160 (350)
T ss_pred ceEEEEeCCCCCC--HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHc--CCCEEEEEeecCCC
Confidence 4666644 66666 899999999999999999999 799999999999999999999999999 99 4899999999
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCccccccc----cCh-hHHHHHHHHHHHhcccchhccccccccccc
Q psy2895 216 GENDEEILTVIHDMRNHNIDILTIGQYLMPSRLHLPVHRY----LHP-KFFEKFKKIAYKLGFKNVLVGSMIRSSYMA 288 (293)
Q Consensus 216 gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~~a~~r~----~~p-~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 288 (293)
|||.+++.++++++.++++++++++ .+.+.+++. ..+. ... +.+....+.+.+.|+.+|++++|+| .+.+
T Consensus 161 gqt~~~~~~~l~~~~~l~~~~is~y-~L~~~~gT~-l~~~~~~~~~~~~~~~~~~~~l~~~Gy~~yeis~fa~-~~~~ 235 (350)
T PRK08446 161 LDNKKLLKEELKLAKELPINHLSAY-SLTIEENTP-FFEKNHKKKDDENLAKFFIEQLEELGFKQYEISNFGK-NYQC 235 (350)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEec-cceecCCCh-hHHhhhcCCCHHHHHHHHHHHHHHCCCcEEEeehhhC-cchh
Confidence 9999999999999999999999997 445544322 1111 111 2245566677788999999999999 5543
No 57
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=99.92 E-value=1e-23 Score=199.09 Aligned_cols=217 Identities=17% Similarity=0.217 Sum_probs=160.5
Q ss_pred eeEeeeeCcccCCCCcCcccCCCC--C-CCCC---hhHHHHHHHHHHH------CCCcEEEEeeecCCCCCCCChhHHHH
Q psy2895 61 VATFMIMGSICTRRCKFCNISHGR--P-DPLD---IEEPKKIAYTINK------LKLNYVVITSVNRDDLHDGGSSHFVS 128 (293)
Q Consensus 61 ~~~~~~~t~~C~~~C~fC~~~~~~--~-~~~~---~eei~~~~~~~~~------~G~~~i~l~gg~~~~l~~~~~~~~~~ 128 (293)
..+|+- -++|+.+|.||++++.. . .... .+.+.++++.+.+ .++..|+|+||+|..++ .+.+.+
T Consensus 164 ~sLYih-IPFC~~~C~YCsf~s~~~~~~~~~~~~Y~~aL~~EI~~~~~~~~~~~~~v~tIyfGGGTPt~L~---~~~L~~ 239 (488)
T PRK08207 164 VSIYIG-IPFCPTRCLYCSFPSYPIKGYKGLVEPYLEALHYEIEEIGKYLKEKGLKITTIYFGGGTPTSLT---AEELER 239 (488)
T ss_pred eEEEEe-cCCCCCcCCCCCCccccCCCCcchHHHHHHHHHHHHHHHHhhhcccCCceeEEEEeCCCccCCC---HHHHHH
Confidence 444443 38999999999998642 1 1211 3444444444321 24568999999864333 578999
Q ss_pred HHHHHHhhCCC---c-EEEEE--cCCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHh
Q psy2895 129 CIKHIRKLSTK---I-KIEIL--IPDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKL 201 (293)
Q Consensus 129 ll~~i~~~~~~---~-~i~~~--~~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~ 201 (293)
+++.+++.+|+ . .+++. .|+.++ ++.++.|+++|++++++|+|| ++++++.|+|+|+.++++++++.++++
T Consensus 240 Ll~~i~~~f~~~~~~~EiTvE~grPd~it--~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~igR~ht~e~v~~ai~~ar~~ 317 (488)
T PRK08207 240 LLEEIYENFPDVKNVKEFTVEAGRPDTIT--EEKLEVLKKYGVDRISINPQTMNDETLKAIGRHHTVEDIIEKFHLAREM 317 (488)
T ss_pred HHHHHHHhccccCCceEEEEEcCCCCCCC--HHHHHHHHhcCCCeEEEcCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhC
Confidence 99999876632 2 34443 367777 899999999999999999999 799999999999999999999999999
Q ss_pred CCCc-eeeEeEEeec-CCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCccc-----cccccChhH----HHHHHHHHHH
Q psy2895 202 YPNI-LTKSGIMVGL-GENDEEILTVIHDMRNHNIDILTIGQYLMPSRLHLP-----VHRYLHPKF----FEKFKKIAYK 270 (293)
Q Consensus 202 ~pgi-~~~~~~ivG~-gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~~a-----~~r~~~p~~----~~~~~~~~~~ 270 (293)
|+ .+++++|+|+ |||.+++.++++++.++++++++++ .+.+.+++.- ...+..+++ +....+.+.+
T Consensus 318 --Gf~~In~DLI~GLPgEt~ed~~~tl~~l~~L~pd~isv~-~L~i~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~l~~ 394 (488)
T PRK08207 318 --GFDNINMDLIIGLPGEGLEEVKHTLEEIEKLNPESLTVH-TLAIKRASRLTENKEKYKVADREEIEKMMEEAEEWAKE 394 (488)
T ss_pred --CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhcCcCEEEEE-eceEcCCChHHHhcCcCCCcCHHHHHHHHHHHHHHHHH
Confidence 99 7999999999 9999999999999999999999998 5555443211 111222333 3444556667
Q ss_pred hcccch------------hccccccccc
Q psy2895 271 LGFKNV------------LVGSMIRSSY 286 (293)
Q Consensus 271 ~G~~~~------------~~~~~~~~~~ 286 (293)
.|+..| +..++++.++
T Consensus 395 ~Gy~~Yylyrqk~~~~n~E~~~ya~~g~ 422 (488)
T PRK08207 395 LGYVPYYLYRQKNMLGNLENVGYAKPGK 422 (488)
T ss_pred cCCHhhhhhhccccccccceecccCCCc
Confidence 899998 6677777655
No 58
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=99.92 E-value=7.9e-24 Score=196.54 Aligned_cols=218 Identities=12% Similarity=0.133 Sum_probs=164.9
Q ss_pred eEeeeeCcccCCCCcCcccCCC---C-CCCCC-------hhHHHHHHHHHHH--CCCcEEEEeeecCCCCCCCChhHHHH
Q psy2895 62 ATFMIMGSICTRRCKFCNISHG---R-PDPLD-------IEEPKKIAYTINK--LKLNYVVITSVNRDDLHDGGSSHFVS 128 (293)
Q Consensus 62 ~~~~~~t~~C~~~C~fC~~~~~---~-~~~~~-------~eei~~~~~~~~~--~G~~~i~l~gg~~~~l~~~~~~~~~~ 128 (293)
.+|+. =+.|..+|.||.++.. . .+..+ .+.+.++++.... .+++.|+|.||++..+ +.+.+.+
T Consensus 12 ~lYiH-iPFC~~~C~YC~f~~~~~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~i~~iy~GGGTps~l---~~~~l~~ 87 (400)
T PRK07379 12 SAYIH-IPFCRRRCFYCDFPISVVGDRTRGGTSGLIEEYVEVLCQEIAITPSFGQPLQTVFFGGGTPSLL---SVEQLER 87 (400)
T ss_pred EEEEE-eccccCcCCCCCCccccccccccccccchHHHHHHHHHHHHHHhhccCCceeEEEECCCccccC---CHHHHHH
Confidence 34443 3899999999999752 1 11111 2334444443222 2578899999986433 3678999
Q ss_pred HHHHHHhhCC---CcEEEEEc-CCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCC
Q psy2895 129 CIKHIRKLST---KIKIEILI-PDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYP 203 (293)
Q Consensus 129 ll~~i~~~~~---~~~i~~~~-~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~p 203 (293)
+++.|++.++ +..+++.+ |+.++ .+.++.|+++|++++++|+|| ++++++.|+|+|+.++..++++.++++
T Consensus 88 ll~~i~~~~~~~~~~eit~E~~P~~lt--~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~-- 163 (400)
T PRK07379 88 ILTTLDQRFGIAPDAEISLEIDPGTFD--LEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQA-- 163 (400)
T ss_pred HHHHHHHhCCCCCCCEEEEEeCCCcCC--HHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHc--
Confidence 9999987653 34566644 66666 889999999999999999999 799999999999999999999999999
Q ss_pred Cce-eeEeEEeec-CCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCcc-----ccccccChhH------HHHHHHHHHH
Q psy2895 204 NIL-TKSGIMVGL-GENDEEILTVIHDMRNHNIDILTIGQYLMPSRLHL-----PVHRYLHPKF------FEKFKKIAYK 270 (293)
Q Consensus 204 gi~-~~~~~ivG~-gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~~-----a~~r~~~p~~------~~~~~~~~~~ 270 (293)
|+. ++.++|+|+ |||.+++.++++.+.++++++++++ -+.+.+++. ....+..|++ +....+.+.+
T Consensus 164 G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~y-~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~ 242 (400)
T PRK07379 164 GIENFSLDLISGLPHQTLEDWQASLEAAIALNPTHLSCY-DLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQ 242 (400)
T ss_pred CCCeEEEEeecCCCCCCHHHHHHHHHHHHcCCCCEEEEe-cceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 997 999999999 9999999999999999999999998 445555431 1112223322 3445666777
Q ss_pred hcccchhccccccccccc
Q psy2895 271 LGFKNVLVGSMIRSSYMA 288 (293)
Q Consensus 271 ~G~~~~~~~~~~~~~~~~ 288 (293)
.|+.+|++++|+|+++.+
T Consensus 243 ~Gy~~yeisnfa~~g~~~ 260 (400)
T PRK07379 243 AGYEHYEISNYAKPGYQC 260 (400)
T ss_pred cCCceeeeeheECCChHH
Confidence 899999999999988764
No 59
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=99.92 E-value=7.6e-24 Score=194.49 Aligned_cols=212 Identities=14% Similarity=0.130 Sum_probs=160.3
Q ss_pred cccCCCCcCcccCCCCCCCCC----hhHHHHHHHH-HHHCC---CcEEEEeeecCCCCCCCChhHHHHHHHHHHhhC---
Q psy2895 69 SICTRRCKFCNISHGRPDPLD----IEEPKKIAYT-INKLK---LNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLS--- 137 (293)
Q Consensus 69 ~~C~~~C~fC~~~~~~~~~~~----~eei~~~~~~-~~~~G---~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~--- 137 (293)
+.|+.+|.||.+++.....-. .+.+.+++.. +...| ++.|+++||+|..++ .+.+.++++.|++.+
T Consensus 8 PFC~~~C~yC~f~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~v~~i~~GGGtPs~l~---~~~l~~ll~~i~~~~~~~ 84 (360)
T TIGR00539 8 PFCENKCGYCDFNSYENKSGPKEEYTQALCQDLKHALSQTDQEPLESIFIGGGTPNTLS---VEAFERLFESIYQHASLS 84 (360)
T ss_pred CCCcCcCCCCCCcccCcCccCHHHHHHHHHHHHHHHHHhcCCCcccEEEeCCCchhcCC---HHHHHHHHHHHHHhCCCC
Confidence 789999999999765221111 2223333332 22334 688999999864332 578888888887654
Q ss_pred CCcEEEEEc-CCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCc-eeeEeEEee
Q psy2895 138 TKIKIEILI-PDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNI-LTKSGIMVG 214 (293)
Q Consensus 138 ~~~~i~~~~-~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi-~~~~~~ivG 214 (293)
++..+++.+ |+.++ .+.++.|+++|++++++|+|| ++++++.++|.+++++++++++.++++ |+ .+++++|+|
T Consensus 85 ~~~eitie~np~~lt--~e~l~~l~~~Gv~risiGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~--G~~~v~~dli~G 160 (360)
T TIGR00539 85 DDCEITTEANPELIT--AEWCKGLKGAGINRLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKS--GIENISLDLMYG 160 (360)
T ss_pred CCCEEEEEeCCCCCC--HHHHHHHHHcCCCEEEEecccCChHHHHHhCCCCCHHHHHHHHHHHHHc--CCCeEEEeccCC
Confidence 345677755 57777 899999999999999999999 799999999999999999999999999 99 589999999
Q ss_pred c-CCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCcccc---ccccChhH----HHHHHHHHHHhcccchhccccccccc
Q psy2895 215 L-GENDEEILTVIHDMRNHNIDILTIGQYLMPSRLHLPV---HRYLHPKF----FEKFKKIAYKLGFKNVLVGSMIRSSY 286 (293)
Q Consensus 215 ~-gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~~a~---~r~~~p~~----~~~~~~~~~~~G~~~~~~~~~~~~~~ 286 (293)
+ |||.+++.++++++.++++++++++ .+.|.+++.-. .++...++ +....+.....|+.++++++|+|+.+
T Consensus 161 lPgqt~~~~~~~l~~~~~l~~~~is~y-~l~~~~gT~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yei~~fa~~~~ 239 (360)
T TIGR00539 161 LPLQTLNSLKEELKLAKELPINHLSAY-ALSVEPNTNFEKNAKKLPDDDSCAHFDEVVREILEGFGFKQYEVSNYAKAGY 239 (360)
T ss_pred CCCCCHHHHHHHHHHHHccCCCEEEee-cceEcCCChhhhhhhcCcCHHHHHHHHHHHHHHHHHcCCceeehhhhcCCCH
Confidence 9 9999999999999999999999998 55666653221 11122222 23344556678999999999999876
Q ss_pred cc
Q psy2895 287 MA 288 (293)
Q Consensus 287 ~~ 288 (293)
.+
T Consensus 240 ~~ 241 (360)
T TIGR00539 240 QV 241 (360)
T ss_pred HH
Confidence 54
No 60
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=99.92 E-value=2.1e-23 Score=196.36 Aligned_cols=216 Identities=12% Similarity=0.148 Sum_probs=166.5
Q ss_pred eeEeeeeCcccCCCCcCcccCCCC-C-C--CCChhHHHHHHHHHHH------CCCcEEEEeeecCCCCCCCChhHHHHHH
Q psy2895 61 VATFMIMGSICTRRCKFCNISHGR-P-D--PLDIEEPKKIAYTINK------LKLNYVVITSVNRDDLHDGGSSHFVSCI 130 (293)
Q Consensus 61 ~~~~~~~t~~C~~~C~fC~~~~~~-~-~--~~~~eei~~~~~~~~~------~G~~~i~l~gg~~~~l~~~~~~~~~~ll 130 (293)
..+|+.| ++|+.+|.||.+.... . . ..-.+.++++++...+ ..++.|+|.||+|..++ .+.+..++
T Consensus 62 ~~lYiHI-PFC~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~GGGTPs~L~---~~~l~~ll 137 (449)
T PRK09058 62 RLLYIHI-PFCRTHCTFCGFFQNAWNPEAVARYTDALIRELAMEADSPLTQSAPIHAVYFGGGTPTALS---AEDLARLI 137 (449)
T ss_pred eEEEEEe-CCcCCcCCCCCCcCcCCchhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEECCCccccCC---HHHHHHHH
Confidence 4455543 7899999999986531 1 1 1235666666665443 23678999999864443 57899999
Q ss_pred HHHHhhCC---CcEEEEEc-CCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCC-
Q psy2895 131 KHIRKLST---KIKIEILI-PDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPN- 204 (293)
Q Consensus 131 ~~i~~~~~---~~~i~~~~-~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pg- 204 (293)
+.|++.++ +..+++.+ |+..+ ++.++.|+++|++++++|+|| ++++++.++|.++.+++++.++.++++ |
T Consensus 138 ~~i~~~~~l~~~~eitiE~~p~~~t--~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lgR~~~~~~~~~~i~~l~~~--g~ 213 (449)
T PRK09058 138 TALREYLPLAPDCEITLEGRINGFD--DEKADAALDAGANRFSIGVQSFNTQVRRRAGRKDDREEVLARLEELVAR--DR 213 (449)
T ss_pred HHHHHhCCCCCCCEEEEEeCcCcCC--HHHHHHHHHcCCCEEEecCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhC--CC
Confidence 99988754 34566644 56566 899999999999999999999 799999999999999999999999999 8
Q ss_pred ceeeEeEEeec-CCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCccccc------cccCh---hH----HHHHHHHHHH
Q psy2895 205 ILTKSGIMVGL-GENDEEILTVIHDMRNHNIDILTIGQYLMPSRLHLPVH------RYLHP---KF----FEKFKKIAYK 270 (293)
Q Consensus 205 i~~~~~~ivG~-gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~~a~~------r~~~p---~~----~~~~~~~~~~ 270 (293)
..+++++|+|+ |||.+++.++++++.+++++++.++ -+.+.+++ ++. ++..| ++ +....+.+.+
T Consensus 214 ~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~~~~is~y-~L~~~pgT-~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~ 291 (449)
T PRK09058 214 AAVVCDLIFGLPGQTPEIWQQDLAIVRDLGLDGVDLY-ALNLLPGT-PLAKAVEKGKLPPPATPAERADMYAYGVEFLAK 291 (449)
T ss_pred CcEEEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEe-ccccCCCC-HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 57999999999 9999999999999999999999998 45555543 222 22223 22 3455666777
Q ss_pred hcccchhccccccccc
Q psy2895 271 LGFKNVLVGSMIRSSY 286 (293)
Q Consensus 271 ~G~~~~~~~~~~~~~~ 286 (293)
.|+.++++++|+|+..
T Consensus 292 ~Gy~~yeis~far~~~ 307 (449)
T PRK09058 292 AGWRQLSNSHWARTTR 307 (449)
T ss_pred CCCeEEeeeeeecCCc
Confidence 8999999999999864
No 61
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=99.92 E-value=1.2e-23 Score=191.53 Aligned_cols=179 Identities=21% Similarity=0.301 Sum_probs=135.0
Q ss_pred eeeeCcccCCCCcCcccCCCC--CCCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCC---------hhHHHHHHHH
Q psy2895 64 FMIMGSICTRRCKFCNISHGR--PDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGG---------SSHFVSCIKH 132 (293)
Q Consensus 64 ~~~~t~~C~~~C~fC~~~~~~--~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~---------~~~~~~ll~~ 132 (293)
++.+||+|+.+|.||+++..+ .+.+++|+|++.++++.+.|+++++|+||++|++.... ...+.+.++.
T Consensus 15 ~i~~Tn~C~~~C~fC~~~~~~~~~~~ls~eei~~~~~~~~~~G~~ei~l~gG~~p~~~~~~~~~~~~~~g~~~~~~~i~~ 94 (336)
T PRK06245 15 FIPLTYECRNRCGYCTFRRDPGQPSLLSPEEVKEILRRGADAGCTEALFTFGEVPDESYERIKEQLAEMGYSSILEYLYD 94 (336)
T ss_pred eeeccccccCCCccCCCcCCCCccCcCCHHHHHHHHHHHHHCCCCEEEEecCCCCccchhhhhhhhhhhhHHHHHHHHHH
Confidence 456799999999999998753 35799999999999999999999999999976542100 1223444444
Q ss_pred HHhhCCCcEEEEEc-CCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhc---CCCCCHHHHHHHHHHHHHhCCCcee
Q psy2895 133 IRKLSTKIKIEILI-PDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKV---RPGSDYKHSLNLLKNFKKLYPNILT 207 (293)
Q Consensus 133 i~~~~~~~~i~~~~-~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i---~~~~~~e~~l~~i~~~~~~~pgi~~ 207 (293)
+.+......+..++ ++.++ ++.++.|+++|+. +.+++|+ ++.+++.+ ++++++++++++++.+++. |+.+
T Consensus 95 i~~~~~~~g~~~~~~~~~lt--~e~i~~Lk~ag~~-l~~~~et~~e~l~~~v~~~~~~~~~~~~l~~i~~a~~~--Gi~~ 169 (336)
T PRK06245 95 LCELALEEGLLPHTNAGILT--REEMEKLKEVNAS-MGLMLEQTSPRLLNTVHRGSPGKDPELRLETIENAGKL--KIPF 169 (336)
T ss_pred HHHHHhhcCCCccccCCCCC--HHHHHHHHHhCCC-CCCCccccchhhHHhhccCCCCCCHHHHHHHHHHHHHc--CCce
Confidence 33321111122222 35566 8899999998864 6778898 68888666 4677899999999999999 9999
Q ss_pred eEeEEeecCCCHHHHHHHHHHHHhCC-----CCEEEeecCCCCCCC
Q psy2895 208 KSGIMVGLGENDEEILTVIHDMRNHN-----IDILTIGQYLMPSRL 248 (293)
Q Consensus 208 ~~~~ivG~gEt~ed~~~~l~~l~~l~-----~~~i~i~~~~~p~~~ 248 (293)
++++|+|+|||.+|+.+++..+++++ ++.+.++ .+.|.++
T Consensus 170 ~~~~i~G~gEt~ed~~~~l~~l~~l~~~~gg~~~~~~~-~f~P~~~ 214 (336)
T PRK06245 170 TTGILIGIGETWEDRAESLEAIAELHERYGHIQEVIIQ-NFSPKPG 214 (336)
T ss_pred eeeeeeECCCCHHHHHHHHHHHHHHHHhhCCCcEEecC-CCcCCCC
Confidence 99999999999999999999999986 4667776 3456554
No 62
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=99.92 E-value=2.4e-23 Score=192.27 Aligned_cols=216 Identities=10% Similarity=0.174 Sum_probs=163.8
Q ss_pred EeeeeCcccCCCCcCcccCCCCC-C---CCC----hhHHHHHHHHHHHC------CCcEEEEeeecCCCCCCCChhHHHH
Q psy2895 63 TFMIMGSICTRRCKFCNISHGRP-D---PLD----IEEPKKIAYTINKL------KLNYVVITSVNRDDLHDGGSSHFVS 128 (293)
Q Consensus 63 ~~~~~t~~C~~~C~fC~~~~~~~-~---~~~----~eei~~~~~~~~~~------G~~~i~l~gg~~~~l~~~~~~~~~~ 128 (293)
+|+.+ ++|+.+|.||.++.... . ..+ .+.+.++++...+. .++.|+|.||+|..++ .+.+.+
T Consensus 5 lYiHi-PFC~~~C~yC~f~~~~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GGGTPs~l~---~~~l~~ 80 (375)
T PRK05628 5 VYVHV-PFCATRCGYCDFNTYTAAELGGGASPDGYLDALRAELELAAAVLGDPAPPVSTVFVGGGTPSLLG---AEGLAR 80 (375)
T ss_pred EEEEe-CCcCCcCCCCCCCcccccccccccCHHHHHHHHHHHHHHHHHhhccCCCceeEEEeCCCccccCC---HHHHHH
Confidence 34432 78999999999975321 1 122 45666666654432 3678899889864333 578889
Q ss_pred HHHHHHhhC---CCcEEEEEc-CCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCC
Q psy2895 129 CIKHIRKLS---TKIKIEILI-PDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYP 203 (293)
Q Consensus 129 ll~~i~~~~---~~~~i~~~~-~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~p 203 (293)
+++.+++.+ ++..+++.+ |+.++ ++.++.|+++|++++++|+|| ++++++.++|.++.++.+++++.++++
T Consensus 81 ll~~i~~~~~~~~~~e~t~e~~p~~i~--~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l~~~-- 156 (375)
T PRK05628 81 VLDAVRDTFGLAPGAEVTTEANPESTS--PEFFAALRAAGFTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAA-- 156 (375)
T ss_pred HHHHHHHhCCCCCCCEEEEEeCCCCCC--HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHc--
Confidence 998888754 334566543 66676 899999999999999999999 899999999999999999999999999
Q ss_pred Cce-eeEeEEeec-CCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCcccccc------ccChhH------HHHHHHHHH
Q psy2895 204 NIL-TKSGIMVGL-GENDEEILTVIHDMRNHNIDILTIGQYLMPSRLHLPVHR------YLHPKF------FEKFKKIAY 269 (293)
Q Consensus 204 gi~-~~~~~ivG~-gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~~a~~r------~~~p~~------~~~~~~~~~ 269 (293)
|+. +++++|+|+ |||.+++.++++++.+++++++.++++ .+.+++. ..+ +..|++ +..+.+.+.
T Consensus 157 g~~~v~~dli~GlPgqt~~~~~~tl~~~~~l~~~~i~~y~l-~~~~gT~-l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~ 234 (375)
T PRK05628 157 GFEHVNLDLIYGTPGESDDDWRASLDAALEAGVDHVSAYAL-IVEDGTA-LARRVRRGELPAPDDDVLADRYELADARLS 234 (375)
T ss_pred CCCcEEEEEeccCCCCCHHHHHHHHHHHHhcCCCEEEeeee-ecCCCCh-HHHHhhcCCCCCCChHHHHHHHHHHHHHHH
Confidence 997 999999999 999999999999999999999998743 4433321 111 222221 345566677
Q ss_pred Hhcccchhccccccccccc
Q psy2895 270 KLGFKNVLVGSMIRSSYMA 288 (293)
Q Consensus 270 ~~G~~~~~~~~~~~~~~~~ 288 (293)
+.|+.++++++|+|+.+..
T Consensus 235 ~~G~~~ye~s~fa~~~~~~ 253 (375)
T PRK05628 235 AAGFDWYEVSNWARPGGEC 253 (375)
T ss_pred HcCCCeeeeccccCCCccc
Confidence 7899999999999987653
No 63
>PRK06267 hypothetical protein; Provisional
Probab=99.92 E-value=1.4e-23 Score=191.36 Aligned_cols=204 Identities=19% Similarity=0.276 Sum_probs=156.5
Q ss_pred CchhhhhhcCCCCccc-cccCceeEe--eeeCcccC--CCCcCcccCCCCC-------CCCChhHHHHHHHHHHHCCCcE
Q psy2895 40 NLVTVCEEASCPNIGE-CFGRGVATF--MIMGSICT--RRCKFCNISHGRP-------DPLDIEEPKKIAYTINKLKLNY 107 (293)
Q Consensus 40 ~~~~l~~~a~~~~~~~-~~~~~~~~~--~~~t~~C~--~~C~fC~~~~~~~-------~~~~~eei~~~~~~~~~~G~~~ 107 (293)
++.+|+..|+ .+++ +||+.+.++ +..|++|+ .+|.||+++..+. ..+++|+|+++++.+.+.|++.
T Consensus 5 ~~~~L~~~A~--~ir~~~fG~~v~l~~~l~~S~~C~l~~~C~FC~~s~~~~~i~~~~~~~~s~eeI~eea~~~~~~Gv~~ 82 (350)
T PRK06267 5 EILENSIKAF--KLTEKHHGNIVSLERALFLGWYCNLKGPCKFCYMSTQKDKIKDPLKARRRVESILAEAILMKRIGWKL 82 (350)
T ss_pred HHHHHHHHHH--HHHHHHcCCeEEEEEeeeecCCCcCCCCCcCCCCcccCCccCccccccCCHHHHHHHHHHHHHcCCCE
Confidence 4556777787 7776 456655553 44599999 8999999987321 3579999999999999999998
Q ss_pred EEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCC
Q psy2895 108 VVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGS 186 (293)
Q Consensus 108 i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~ 186 (293)
++++||.. +. .+.+.++++.+++.. +..+.+. .+..+ .+.+..++.+|+ .+++|+ ++++++.+++++
T Consensus 83 ~~lsgG~~--~~---~~el~~i~e~I~~~~-~~~~~~s-~G~~d--~~~~~~~~l~Gv---~g~~ET~~~~~~~~i~~~~ 150 (350)
T PRK06267 83 EFISGGYG--YT---TEEINDIAEMIAYIQ-GCKQYLN-VGIID--FLNINLNEIEGV---VGAVETVNPKLHREICPGK 150 (350)
T ss_pred EEEecCCC--CC---HHHHHHHHHHHHHhh-CCceEee-cccCC--HHHHhhccccCc---eeeeecCCHHHHHhhCCCC
Confidence 89999975 32 356777888876642 2222222 24454 445555555554 578999 599999999999
Q ss_pred CHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEeecCCCCCC----------------Ccc
Q psy2895 187 DYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIGQYLMPSR----------------LHL 250 (293)
Q Consensus 187 ~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~----------------~~~ 250 (293)
++++++++++.++++ |+.+++++|+|+|||.+|+.++++++++++++.++++ .+.|.+ +++
T Consensus 151 s~ed~~~~l~~ak~a--Gi~v~~g~IiGlgEt~ed~~~~l~~l~~l~~d~v~~~-~L~P~pGTp~~~~~~~s~~e~lr~i 227 (350)
T PRK06267 151 PLDKIKEMLLKAKDL--GLKTGITIILGLGETEDDIEKLLNLIEELDLDRITFY-SLNPQKGTIFENKPSVTTLEYMNWV 227 (350)
T ss_pred CHHHHHHHHHHHHHc--CCeeeeeEEEeCCCCHHHHHHHHHHHHHcCCCEEEEE-eeeECCCCcCCCCCCCCHHHHHHHH
Confidence 999999999999999 9999999999999999999999999999999998887 455544 456
Q ss_pred ccccccChhH
Q psy2895 251 PVHRYLHPKF 260 (293)
Q Consensus 251 a~~r~~~p~~ 260 (293)
|++|+++|+.
T Consensus 228 a~~Rl~lP~~ 237 (350)
T PRK06267 228 SSVRLNFPKI 237 (350)
T ss_pred HHHHHHCCCC
Confidence 6667666643
No 64
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=99.92 E-value=1.9e-23 Score=193.07 Aligned_cols=216 Identities=13% Similarity=0.194 Sum_probs=165.6
Q ss_pred EeeeeCcccCCCCcCcccCCC--CCC--CCChhHHHHHHHHHHHC---CCcEEEEeeecCCCCCCCChhHHHHHHHHHHh
Q psy2895 63 TFMIMGSICTRRCKFCNISHG--RPD--PLDIEEPKKIAYTINKL---KLNYVVITSVNRDDLHDGGSSHFVSCIKHIRK 135 (293)
Q Consensus 63 ~~~~~t~~C~~~C~fC~~~~~--~~~--~~~~eei~~~~~~~~~~---G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~ 135 (293)
+|+.+ +.|+.+|.||.++.. ... ...++.+.++++.+... +++.|+++||++..+ +.+.+.++++.+++
T Consensus 4 lYihi-PfC~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~i~~i~~gGGtpt~l---~~~~l~~ll~~i~~ 79 (377)
T PRK08599 4 AYIHI-PFCEHICYYCDFNKVFIKNQPVDEYLDALIKEMNTYAIRPFDKLKTIYIGGGTPTAL---SAEQLERLLTAIHR 79 (377)
T ss_pred EEEEe-CCcCCCCCCCCCeeeccCccCHHHHHHHHHHHHHHhhhcCCCceeEEEeCCCCcccC---CHHHHHHHHHHHHH
Confidence 44443 579999999998752 221 22366777777655544 467788888875323 35789999999988
Q ss_pred hCC---CcEEEEEc-CCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCce-eeE
Q psy2895 136 LST---KIKIEILI-PDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNIL-TKS 209 (293)
Q Consensus 136 ~~~---~~~i~~~~-~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~-~~~ 209 (293)
.++ ...+++.+ |+.++ ++.++.|+++|++++++++|| ++++++.|+|+++.+++.++++.++++ |+. ++.
T Consensus 80 ~~~~~~~~eit~e~~p~~l~--~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i~~l~~~--g~~~v~~ 155 (377)
T PRK08599 80 NLPLSGLEEFTFEANPGDLT--KEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKA--GFDNISI 155 (377)
T ss_pred hCCCCCCCEEEEEeCCCCCC--HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHc--CCCcEEE
Confidence 643 23566644 57676 899999999999999999999 799999999999999999999999999 996 789
Q ss_pred eEEeec-CCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCcccc-----ccccCh--h----HHHHHHHHHHHhcccchh
Q psy2895 210 GIMVGL-GENDEEILTVIHDMRNHNIDILTIGQYLMPSRLHLPV-----HRYLHP--K----FFEKFKKIAYKLGFKNVL 277 (293)
Q Consensus 210 ~~ivG~-gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~~a~-----~r~~~p--~----~~~~~~~~~~~~G~~~~~ 277 (293)
++|+|+ |||.+++.++++++.++++++++++ .+.|.+++.-. .++-.| + .+..+.+.+.+.|+.+++
T Consensus 156 dli~GlPgqt~~~~~~~l~~~~~l~~~~i~~y-~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~~~~ 234 (377)
T PRK08599 156 DLIYALPGQTIEDFKESLAKALALDIPHYSAY-SLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGFHQYE 234 (377)
T ss_pred eeecCCCCCCHHHHHHHHHHHHccCCCEEeee-ceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCcEee
Confidence 999999 9999999999999999999999887 34454433211 112112 1 244566677778999999
Q ss_pred cccccccccc
Q psy2895 278 VGSMIRSSYM 287 (293)
Q Consensus 278 ~~~~~~~~~~ 287 (293)
+++|+|+.+.
T Consensus 235 ~~~fa~~~~~ 244 (377)
T PRK08599 235 ISNFAKPGFE 244 (377)
T ss_pred eeeeeCCChH
Confidence 9999998765
No 65
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=99.92 E-value=2.1e-23 Score=192.68 Aligned_cols=217 Identities=15% Similarity=0.197 Sum_probs=162.2
Q ss_pred eEeeeeCcccCCCCcCcccCCCCC-CCC---ChhHHHHHHHHHHH-CCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhh
Q psy2895 62 ATFMIMGSICTRRCKFCNISHGRP-DPL---DIEEPKKIAYTINK-LKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKL 136 (293)
Q Consensus 62 ~~~~~~t~~C~~~C~fC~~~~~~~-~~~---~~eei~~~~~~~~~-~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~ 136 (293)
.+|+.+ +.|+.+|.||.++.... ... .++.++++++.+.. .+++.|+|+||++..++ .+.+..+++.+++.
T Consensus 5 ~lYiHi-PfC~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~i~~gGGtps~l~---~~~l~~L~~~i~~~ 80 (374)
T PRK05799 5 SLYIHI-PFCKQKCLYCDFPSYSGKEDLMMEYIKALSKEIRNSTKNKKIKSIFIGGGTPTYLS---LEALEILKETIKKL 80 (374)
T ss_pred EEEEEe-CCccCCCCCCCCCcccCCcchHHHHHHHHHHHHHhhcCCCceeEEEECCCcccCCC---HHHHHHHHHHHHhC
Confidence 344432 78999999999976432 122 24555555543322 34678999998853232 45666777777653
Q ss_pred C--CCcEEEEEc-CCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCce-eeEeE
Q psy2895 137 S--TKIKIEILI-PDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNIL-TKSGI 211 (293)
Q Consensus 137 ~--~~~~i~~~~-~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~-~~~~~ 211 (293)
. +++.+++.+ |+.++ ++.++.|+++|++++++|+|| ++++++.++|.++.++.+++++.++++ |+. +++++
T Consensus 81 ~~~~~~eitie~~p~~~t--~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l~R~~~~~~~~~ai~~l~~~--g~~~v~~dl 156 (374)
T PRK05799 81 NKKEDLEFTVEGNPGTFT--EEKLKILKSMGVNRLSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARKL--GFNNINVDL 156 (374)
T ss_pred CCCCCCEEEEEeCCCcCC--HHHHHHHHHcCCCEEEEECccCCHHHHHHcCCCCCHHHHHHHHHHHHHc--CCCcEEEEe
Confidence 1 234666644 56676 899999999999999999999 799999999999999999999999999 995 89999
Q ss_pred Eeec-CCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCcccccc------ccChh--H----HHHHHHHHHHhcccchhc
Q psy2895 212 MVGL-GENDEEILTVIHDMRNHNIDILTIGQYLMPSRLHLPVHR------YLHPK--F----FEKFKKIAYKLGFKNVLV 278 (293)
Q Consensus 212 ivG~-gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~~a~~r------~~~p~--~----~~~~~~~~~~~G~~~~~~ 278 (293)
|+|+ |||.+++.++++++.++++++++++ .+.|.+++. ..+ +-.|+ . +....+...+.|+.++++
T Consensus 157 i~GlPgqt~e~~~~~l~~~~~l~~~~is~y-~l~~~pgT~-l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~~ye~ 234 (374)
T PRK05799 157 MFGLPNQTLEDWKETLEKVVELNPEHISCY-SLIIEEGTP-FYNLYENGKLKLPDEEEEREMYHYTIEFLKEKGYHQYEI 234 (374)
T ss_pred ecCCCCCCHHHHHHHHHHHHhcCCCEEEEe-ccEecCCCH-HHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCcEEee
Confidence 9999 9999999999999999999999998 455555432 222 22232 2 344556677789999999
Q ss_pred cccccccccc
Q psy2895 279 GSMIRSSYMA 288 (293)
Q Consensus 279 ~~~~~~~~~~ 288 (293)
++|+|+.+..
T Consensus 235 ~~fa~~~~~~ 244 (374)
T PRK05799 235 SNFAKPGKEC 244 (374)
T ss_pred eeeECCCcch
Confidence 9999987653
No 66
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=99.92 E-value=5e-23 Score=190.28 Aligned_cols=219 Identities=10% Similarity=0.141 Sum_probs=163.5
Q ss_pred eeEeeeeCcccCCCCcCcccCCCCCCCCC----hhHHHHHHHHHHH----CCCcEEEEeeecCCCCCCCChhHHHHHHHH
Q psy2895 61 VATFMIMGSICTRRCKFCNISHGRPDPLD----IEEPKKIAYTINK----LKLNYVVITSVNRDDLHDGGSSHFVSCIKH 132 (293)
Q Consensus 61 ~~~~~~~t~~C~~~C~fC~~~~~~~~~~~----~eei~~~~~~~~~----~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~ 132 (293)
..+|+. -++|..+|.||.|.+....... .+.+.++++.... ..++.|+|+||+|..++ .+.+..+++.
T Consensus 12 ~~lYiH-iPFC~~~C~yC~f~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~l~---~~~l~~ll~~ 87 (390)
T PRK06582 12 LSIYIH-WPFCLSKCPYCDFNSHVASTIDHNQWLKSYEKEIEYFKDIIQNKYIKSIFFGGGTPSLMN---PVIVEGIINK 87 (390)
T ss_pred eEEEEE-eCCCcCcCCCCCCeeccCCCCCHHHHHHHHHHHHHHHHHHccCCceeEEEECCCccccCC---HHHHHHHHHH
Confidence 345554 3899999999999763211111 2223333333222 24678999999864333 5788888998
Q ss_pred HHhhC---CCcEEEEEc-CCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCcee
Q psy2895 133 IRKLS---TKIKIEILI-PDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILT 207 (293)
Q Consensus 133 i~~~~---~~~~i~~~~-~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~ 207 (293)
+++.+ +...+++.+ |+.++ .+.++.|+++|++++++|+|| ++++++.++|.|+.++.+++++.+++. +..+
T Consensus 88 i~~~~~~~~~~eitiE~nP~~~~--~e~l~~l~~~GvnRiSiGvQS~~d~~L~~lgR~h~~~~~~~ai~~~~~~--~~~v 163 (390)
T PRK06582 88 ISNLAIIDNQTEITLETNPTSFE--TEKFKAFKLAGINRVSIGVQSLKEDDLKKLGRTHDCMQAIKTIEAANTI--FPRV 163 (390)
T ss_pred HHHhCCCCCCCEEEEEeCCCcCC--HHHHHHHHHCCCCEEEEECCcCCHHHHHHcCCCCCHHHHHHHHHHHHHh--CCcE
Confidence 88753 234677755 66676 899999999999999999999 799999999999999999999999998 8889
Q ss_pred eEeEEeec-CCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCc-----cccccccChhH------HHHHHHHHHHhcccc
Q psy2895 208 KSGIMVGL-GENDEEILTVIHDMRNHNIDILTIGQYLMPSRLH-----LPVHRYLHPKF------FEKFKKIAYKLGFKN 275 (293)
Q Consensus 208 ~~~~ivG~-gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~-----~a~~r~~~p~~------~~~~~~~~~~~G~~~ 275 (293)
+.++|+|+ |+|.+++.++++.+.++++++|+++++ .+.+++ ....++..|++ +....+...+.|+.+
T Consensus 164 ~~DlI~GlPgqt~e~~~~~l~~~~~l~p~his~y~L-~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 242 (390)
T PRK06582 164 SFDLIYARSGQTLKDWQEELKQAMQLATSHISLYQL-TIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKYFR 242 (390)
T ss_pred EEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEEecC-EEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCce
Confidence 99999999 999999999999999999999999743 333321 11122333332 345566677789999
Q ss_pred hhccccccccccc
Q psy2895 276 VLVGSMIRSSYMA 288 (293)
Q Consensus 276 ~~~~~~~~~~~~~ 288 (293)
+++++|+|+++.+
T Consensus 243 yeis~fa~~g~~~ 255 (390)
T PRK06582 243 YEISNYAKIGQEC 255 (390)
T ss_pred eeceeeeCCChhh
Confidence 9999999988753
No 67
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=99.91 E-value=5.9e-23 Score=188.95 Aligned_cols=217 Identities=10% Similarity=0.120 Sum_probs=161.5
Q ss_pred eEeeeeCcccCCCCcCcccCCCCCCCCCh----hHHHHH-HHHHHH----CCCcEEEEeeecCCCCCCCChhHHHHHHHH
Q psy2895 62 ATFMIMGSICTRRCKFCNISHGRPDPLDI----EEPKKI-AYTINK----LKLNYVVITSVNRDDLHDGGSSHFVSCIKH 132 (293)
Q Consensus 62 ~~~~~~t~~C~~~C~fC~~~~~~~~~~~~----eei~~~-~~~~~~----~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~ 132 (293)
.+|+.+ ++|..+|.||.+.......-.. +.++++ ++.... ..++.|+++||+|..++ .+.+.++++.
T Consensus 8 ~lYiHI-PFC~~~C~yC~f~~~~~~~~~~~~y~~~l~~E~~~~~~~~~~~~~i~~iy~GGGTPs~l~---~~~l~~ll~~ 83 (370)
T PRK06294 8 ALYIHI-PFCTKKCHYCSFYTIPYKEESVSLYCNAVLKEGLKKLAPLRCSHFIDTVFFGGGTPSLVP---PALIQDILKT 83 (370)
T ss_pred EEEEEe-CCccCcCCCCcCcccCCCccCHHHHHHHHHHHHHHHhhhhccCCceeEEEECCCccccCC---HHHHHHHHHH
Confidence 445443 8999999999987642111112 222222 222221 23678999999864333 5788899998
Q ss_pred HHhhCCCcEEEEEc-CCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCce-eeE
Q psy2895 133 IRKLSTKIKIEILI-PDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNIL-TKS 209 (293)
Q Consensus 133 i~~~~~~~~i~~~~-~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~-~~~ 209 (293)
|++. +...+++.+ |+.++ ++.++.|+++|++++++|+|| ++++++.++|+++.++..++++.+++. |+. ++.
T Consensus 84 i~~~-~~~eit~E~~P~~~~--~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~~~~~~~~ai~~~~~~--g~~~v~~ 158 (370)
T PRK06294 84 LEAP-HATEITLEANPENLS--ESYIRALALTGINRISIGVQTFDDPLLKLLGRTHSSSKAIDAVQECSEH--GFSNLSI 158 (370)
T ss_pred HHhC-CCCeEEEEeCCCCCC--HHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCCCHHHHHHHHHHHHHc--CCCeEEE
Confidence 8764 455677754 66666 889999999999999999999 799999999999999999999999999 994 999
Q ss_pred eEEeec-CCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCccc-----cccccChh--H----HHHHHHHHHHhcccchh
Q psy2895 210 GIMVGL-GENDEEILTVIHDMRNHNIDILTIGQYLMPSRLHLP-----VHRYLHPK--F----FEKFKKIAYKLGFKNVL 277 (293)
Q Consensus 210 ~~ivG~-gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~~a-----~~r~~~p~--~----~~~~~~~~~~~G~~~~~ 277 (293)
++|+|+ |||.+++.++++.+.++++++++++ .+.|.+++.- ....-.|+ . +....+.+.+.|+.+++
T Consensus 159 Dli~GlPgqt~~~~~~~l~~~~~l~~~~is~y-~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~ye 237 (370)
T PRK06294 159 DLIYGLPTQSLSDFIVDLHQAITLPITHISLY-NLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGFTRYE 237 (370)
T ss_pred EeecCCCCCCHHHHHHHHHHHHccCCCeEEEe-eeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCCCeee
Confidence 999999 9999999999999999999999997 4455554311 01111232 2 34455667778999999
Q ss_pred ccccccccccc
Q psy2895 278 VGSMIRSSYMA 288 (293)
Q Consensus 278 ~~~~~~~~~~~ 288 (293)
+++|+|+.+.+
T Consensus 238 is~fa~~~~~~ 248 (370)
T PRK06294 238 LASYAKPQAQS 248 (370)
T ss_pred eeeeeCCCchh
Confidence 99999987764
No 68
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=99.91 E-value=8.2e-23 Score=191.52 Aligned_cols=217 Identities=10% Similarity=0.179 Sum_probs=165.2
Q ss_pred ceeEeeeeCcccCCCCcCcccCCCC--CCCC---ChhHHHHHHHHHHHC----CCcEEEEeeecCCCCCCCChhHHHHHH
Q psy2895 60 GVATFMIMGSICTRRCKFCNISHGR--PDPL---DIEEPKKIAYTINKL----KLNYVVITSVNRDDLHDGGSSHFVSCI 130 (293)
Q Consensus 60 ~~~~~~~~t~~C~~~C~fC~~~~~~--~~~~---~~eei~~~~~~~~~~----G~~~i~l~gg~~~~l~~~~~~~~~~ll 130 (293)
...+|+.+ +.|+.+|.||.+.... .... ..+.++++++.+.+. .+..|+|.||+|..+ +.+.+.+++
T Consensus 39 ~~~lYvHI-PFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~i~~i~~GGGTPs~l---~~~~l~~Ll 114 (430)
T PRK08208 39 ALSLYIHI-PFCEMRCGFCNLFTRTGADAEFIDSYLDALIRQAEQVAEALAPARFASFAVGGGTPTLL---NAAELEKLF 114 (430)
T ss_pred ceEEEEEe-CCccCcCCCCCCccccCCccchHHHHHHHHHHHHHHHHHHcCCCceeEEEEcCCccccC---CHHHHHHHH
Confidence 45566655 8999999999987642 1111 245566666554432 356888888875322 357888888
Q ss_pred HHHHhhCC----CcEEEEEc-CCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCC
Q psy2895 131 KHIRKLST----KIKIEILI-PDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPN 204 (293)
Q Consensus 131 ~~i~~~~~----~~~i~~~~-~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pg 204 (293)
+.|++.++ +..+++.+ |+.++ ++.++.|+++|++++++|+|| ++++++.++|+++.+++.++++.++++ |
T Consensus 115 ~~i~~~~~~~~~~~eitiE~~P~~lt--~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~--g 190 (430)
T PRK08208 115 DSVERVLGVDLGNIPKSVETSPATTT--AEKLALLAARGVNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAA--G 190 (430)
T ss_pred HHHHHhCCCCCCCceEEEEeCcCcCC--HHHHHHHHHcCCCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHc--C
Confidence 88887653 23456644 66666 899999999999999999999 799999999999999999999999999 9
Q ss_pred ce-eeEeEEeec-CCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCccccccccCh--hH----HHHHHHHHHHhcccch
Q psy2895 205 IL-TKSGIMVGL-GENDEEILTVIHDMRNHNIDILTIGQYLMPSRLHLPVHRYLHP--KF----FEKFKKIAYKLGFKNV 276 (293)
Q Consensus 205 i~-~~~~~ivG~-gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~~a~~r~~~p--~~----~~~~~~~~~~~G~~~~ 276 (293)
+. +++++|+|+ |||.+++.++++++.+++++++.+++ +.+.+++ ++.+...+ +. +....+.+.+.|+.++
T Consensus 191 ~~~i~~dlI~GlP~qt~e~~~~~l~~~~~l~~~~is~y~-L~~~~~T-~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy~~y 268 (430)
T PRK08208 191 FPILNIDLIYGIPGQTHASWMESLDQALVYRPEELFLYP-LYVRPLT-GLGRRARAWDDQRLSLYRLARDLLLEAGYTQT 268 (430)
T ss_pred CCeEEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEEcc-ccccCCC-ccchhcCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 96 689999999 99999999999999999999999984 4554443 23333333 22 3455666777899999
Q ss_pred hccccccccc
Q psy2895 277 LVGSMIRSSY 286 (293)
Q Consensus 277 ~~~~~~~~~~ 286 (293)
++++|+|+..
T Consensus 269 ei~~far~~~ 278 (430)
T PRK08208 269 SMRMFRRNDA 278 (430)
T ss_pred eecceecCCc
Confidence 9999999543
No 69
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=99.91 E-value=6.8e-23 Score=189.27 Aligned_cols=218 Identities=10% Similarity=0.128 Sum_probs=165.5
Q ss_pred eEeeeeCcccCCCCcCcccCCCCCCCCC----hhHHHHHHHHHHH----CCCcEEEEeeecCCCCCCCChhHHHHHHHHH
Q psy2895 62 ATFMIMGSICTRRCKFCNISHGRPDPLD----IEEPKKIAYTINK----LKLNYVVITSVNRDDLHDGGSSHFVSCIKHI 133 (293)
Q Consensus 62 ~~~~~~t~~C~~~C~fC~~~~~~~~~~~----~eei~~~~~~~~~----~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i 133 (293)
.+|+. -++|..+|.||.+++....... .+.+.++++...+ ..++.|+|.||+|..++ .+.+.++++.|
T Consensus 6 ~lYiH-IPFC~~kC~yC~f~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~l~---~~~L~~ll~~i 81 (380)
T PRK09057 6 GLYVH-WPFCLAKCPYCDFNSHVRHAIDQARFAAAFLRELATEAARTGPRTLTSIFFGGGTPSLMQ---PETVAALLDAI 81 (380)
T ss_pred EEEEE-eCCcCCcCCCCCCcccCcCcCCHHHHHHHHHHHHHHHHHHcCCCCcCeEEeCCCccccCC---HHHHHHHHHHH
Confidence 34443 3899999999999864221122 3445555554332 24678999999964333 57899999999
Q ss_pred HhhCCC---cEEEEEc-CCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceee
Q psy2895 134 RKLSTK---IKIEILI-PDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTK 208 (293)
Q Consensus 134 ~~~~~~---~~i~~~~-~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~ 208 (293)
++.++- ..+++.+ |+.++ .+.++.|+++|++++++|+|| ++++++.|+|+++.++..++++.++++ +..++
T Consensus 82 ~~~f~~~~~~eit~E~~P~~i~--~e~L~~l~~~GvnrislGvQS~~d~vL~~l~R~~~~~~~~~ai~~~~~~--~~~v~ 157 (380)
T PRK09057 82 ARLWPVADDIEITLEANPTSVE--AGRFRGYRAAGVNRVSLGVQALNDADLRFLGRLHSVAEALAAIDLAREI--FPRVS 157 (380)
T ss_pred HHhCCCCCCccEEEEECcCcCC--HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHh--CccEE
Confidence 887542 3566644 66676 799999999999999999999 799999999999999999999999999 88999
Q ss_pred EeEEeec-CCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCc-----cccccccCh--hH----HHHHHHHHHHhcccch
Q psy2895 209 SGIMVGL-GENDEEILTVIHDMRNHNIDILTIGQYLMPSRLH-----LPVHRYLHP--KF----FEKFKKIAYKLGFKNV 276 (293)
Q Consensus 209 ~~~ivG~-gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~-----~a~~r~~~p--~~----~~~~~~~~~~~G~~~~ 276 (293)
.++|+|+ |+|.+++.++++.+.+++++++.++++ .+.+++ ....++-.| ++ +....+.....|+.++
T Consensus 158 ~dli~GlPgqt~~~~~~~l~~~~~l~p~~is~y~L-~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~G~~~y 236 (380)
T PRK09057 158 FDLIYARPGQTLAAWRAELKEALSLAADHLSLYQL-TIEEGTAFYGLHAAGKLILPDEDLAADLYELTQEITAAAGLPAY 236 (380)
T ss_pred EEeecCCCCCCHHHHHHHHHHHHhcCCCeEEeecc-eecCCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCchh
Confidence 9999999 999999999999999999999999843 444431 111122223 22 3455666677899999
Q ss_pred hccccccccccc
Q psy2895 277 LVGSMIRSSYMA 288 (293)
Q Consensus 277 ~~~~~~~~~~~~ 288 (293)
++++++|.++..
T Consensus 237 e~s~~a~~g~~~ 248 (380)
T PRK09057 237 EISNHARPGAES 248 (380)
T ss_pred hhHHHcCCCchh
Confidence 999999987643
No 70
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=99.91 E-value=7.7e-23 Score=193.18 Aligned_cols=217 Identities=12% Similarity=0.169 Sum_probs=164.4
Q ss_pred eEeeeeCcccCCCCcCcccCCCC--CCCC---ChhHHHHHHHHHHH-----CCCcEEEEeeecCCCCCCCChhHHHHHHH
Q psy2895 62 ATFMIMGSICTRRCKFCNISHGR--PDPL---DIEEPKKIAYTINK-----LKLNYVVITSVNRDDLHDGGSSHFVSCIK 131 (293)
Q Consensus 62 ~~~~~~t~~C~~~C~fC~~~~~~--~~~~---~~eei~~~~~~~~~-----~G~~~i~l~gg~~~~l~~~~~~~~~~ll~ 131 (293)
.+|+. -+.|+.+|.||.++... .... ..+.++++++.+.. .+++.|+|+||++..++ .+++.++++
T Consensus 51 ~lYiH-iPFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~I~fgGGtP~~l~---~~~l~~ll~ 126 (455)
T TIGR00538 51 SLYVH-IPFCHKACYFCGCNVIITRQKHKADPYLDALEKEIALVAPLFDGNRHVSQLHWGGGTPTYLS---PEQISRLMK 126 (455)
T ss_pred EEEEE-eCCccCcCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCcCCCC---HHHHHHHHH
Confidence 44554 37999999999998632 2122 24556666655432 36789999999864332 578999999
Q ss_pred HHHhhCC---CcEEEEEc-CCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCce
Q psy2895 132 HIRKLST---KIKIEILI-PDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNIL 206 (293)
Q Consensus 132 ~i~~~~~---~~~i~~~~-~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~ 206 (293)
.+++.++ +..+++.+ |+.++ ++.++.|+++|++++++|+|| ++++++.++|.++.++.+++++.++++ |+.
T Consensus 127 ~i~~~~~~~~~~eitie~np~~l~--~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~--G~~ 202 (455)
T TIGR00538 127 LIRENFPFNADAEISIEIDPRYIT--KDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREA--GFT 202 (455)
T ss_pred HHHHhCCCCCCCeEEEEeccCcCC--HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhc--CCC
Confidence 9988643 34566654 56666 899999999999999999999 799999999999999999999999999 995
Q ss_pred -eeEeEEeec-CCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCcccc----ccc--cChhH----HHHHHHHHHHhccc
Q psy2895 207 -TKSGIMVGL-GENDEEILTVIHDMRNHNIDILTIGQYLMPSRLHLPV----HRY--LHPKF----FEKFKKIAYKLGFK 274 (293)
Q Consensus 207 -~~~~~ivG~-gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~~a~----~r~--~~p~~----~~~~~~~~~~~G~~ 274 (293)
+++++|+|+ |+|.+++.++++++.++++++++++++ .+.+...+. .+. ..+++ +..+.+...+.|+.
T Consensus 203 ~v~~dli~GlPgqt~e~~~~tl~~~~~l~~~~is~y~L-~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy~ 281 (455)
T TIGR00538 203 SINIDLIYGLPKQTKESFAKTLEKVAELNPDRLAVFNY-AHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGYQ 281 (455)
T ss_pred cEEEeEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEecC-ccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCCE
Confidence 889999999 999999999999999999999999743 322221111 122 22333 23445566678999
Q ss_pred chhcccccccccc
Q psy2895 275 NVLVGSMIRSSYM 287 (293)
Q Consensus 275 ~~~~~~~~~~~~~ 287 (293)
++++++|+|+.+.
T Consensus 282 ~~~~~~fa~~~~~ 294 (455)
T TIGR00538 282 FIGMDHFAKPDDE 294 (455)
T ss_pred EEeccceeCCChH
Confidence 9999999998654
No 71
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=99.90 E-value=1.6e-22 Score=190.93 Aligned_cols=218 Identities=11% Similarity=0.179 Sum_probs=164.0
Q ss_pred eeEeeeeCcccCCCCcCcccCCCC--CCCCC---hhHHHHHHHHHHH-----CCCcEEEEeeecCCCCCCCChhHHHHHH
Q psy2895 61 VATFMIMGSICTRRCKFCNISHGR--PDPLD---IEEPKKIAYTINK-----LKLNYVVITSVNRDDLHDGGSSHFVSCI 130 (293)
Q Consensus 61 ~~~~~~~t~~C~~~C~fC~~~~~~--~~~~~---~eei~~~~~~~~~-----~G~~~i~l~gg~~~~l~~~~~~~~~~ll 130 (293)
..+|+.+ +.|+.+|.||.++... ..... .+.+.++++...+ .+++.|+|+||+|..+ +.+.+.+++
T Consensus 50 ~~LYvHI-PFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~~gGGtPs~l---~~~~l~~ll 125 (453)
T PRK09249 50 LSLYVHI-PFCRSLCYYCGCNKIITRDHEKADPYLDALEKEIALVAALLGPGRPVSQLHWGGGTPTFL---SPEQLRRLM 125 (453)
T ss_pred eEEEEEe-CCccccCCCCCCcccCCCCcchHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCcccccC---CHHHHHHHH
Confidence 4455543 8999999999987642 22222 3455555554332 3577899999986333 357899999
Q ss_pred HHHHhhCC---CcEEEEEc-CCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCc
Q psy2895 131 KHIRKLST---KIKIEILI-PDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNI 205 (293)
Q Consensus 131 ~~i~~~~~---~~~i~~~~-~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi 205 (293)
+.+++.++ +..+++.+ |+.++ ++.++.|+++|++++++|+|| ++++++.+++.++.++.+++++.++++ |+
T Consensus 126 ~~l~~~~~~~~~~e~tie~np~~lt--~e~l~~l~~aG~~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~l~~~--G~ 201 (453)
T PRK09249 126 ALLREHFNFAPDAEISIEIDPRELD--LEMLDALRELGFNRLSLGVQDFDPEVQKAVNRIQPFEFTFALVEAAREL--GF 201 (453)
T ss_pred HHHHHhCCCCCCCEEEEEecCCcCC--HHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHc--CC
Confidence 99988643 34566655 56666 899999999999999999999 799999999999999999999999999 99
Q ss_pred -eeeEeEEeec-CCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCcccc------ccccChhH----HHHHHHHHHHhcc
Q psy2895 206 -LTKSGIMVGL-GENDEEILTVIHDMRNHNIDILTIGQYLMPSRLHLPV------HRYLHPKF----FEKFKKIAYKLGF 273 (293)
Q Consensus 206 -~~~~~~ivG~-gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~~a~------~r~~~p~~----~~~~~~~~~~~G~ 273 (293)
.+++++|+|+ |||.+++.++++++.+++++++.++++ .+.+..... ..+...++ +..+.+.+...|+
T Consensus 202 ~~v~~dli~GlPgqt~e~~~~~l~~~~~l~~~~i~~y~l-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy 280 (453)
T PRK09249 202 TSINIDLIYGLPKQTPESFARTLEKVLELRPDRLAVFNY-AHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLTEAGY 280 (453)
T ss_pred CcEEEEEEccCCCCCHHHHHHHHHHHHhcCCCEEEEccC-ccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHHHCCC
Confidence 7999999999 999999999999999999999999744 322211000 11122222 3345566677899
Q ss_pred cchhcccccccccc
Q psy2895 274 KNVLVGSMIRSSYM 287 (293)
Q Consensus 274 ~~~~~~~~~~~~~~ 287 (293)
.++++++|+|+.+.
T Consensus 281 ~~ye~s~far~~~~ 294 (453)
T PRK09249 281 QYIGMDHFALPDDE 294 (453)
T ss_pred EEEeccceeCCCch
Confidence 99999999997653
No 72
>KOG2900|consensus
Probab=99.90 E-value=3.2e-24 Score=179.26 Aligned_cols=228 Identities=21% Similarity=0.322 Sum_probs=171.5
Q ss_pred hcHHHHHHHHHhcCchhhhhhcCCCCccccccCc--eeE---eeeeCcccCCCCcCcccCCCCC------CCCChhHHHH
Q psy2895 27 DNFNKTKNILRANNLVTVCEEASCPNIGECFGRG--VAT---FMIMGSICTRRCKFCNISHGRP------DPLDIEEPKK 95 (293)
Q Consensus 27 ~~~~~~~~l~~~~~~~~l~~~a~~~~~~~~~~~~--~~~---~~~~t~~C~~~C~fC~~~~~~~------~~~~~eei~~ 95 (293)
=+.+++.++++. ++.+|...|. ..-++|.+. +.. ..+-|+||..+|+||.+++.+. +.++.+++++
T Consensus 48 Wtr~eik~iYdt-PLldL~f~aa--~~HRk~Hdp~kVQqCTLlsIKtGGCsEDCkYCaQSSRy~TGvKA~klmk~DeVi~ 124 (380)
T KOG2900|consen 48 WTRSEIKEIYDT-PLLDLTFAAA--LQHRKWHDPTKVQQCTLLSIKTGGCSEDCKYCAQSSRYDTGVKAEKLMKVDEVIK 124 (380)
T ss_pred ccHHHHHHHhcc-hHHHHHHHHH--HHHhhhCCccceeeeEEEEeecCCcccccchhhhhcccccchhHHHHhhHHHHHH
Confidence 345677777754 4444433332 233344442 322 2344899999999999986331 4689999999
Q ss_pred HHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcC-CCcCcHHHHHHHHHHcCCCeeeecccc
Q psy2895 96 IAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIP-DFRNQINHVLKIFKQALPDVLNHNIET 174 (293)
Q Consensus 96 ~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~-~~~~~~~e~l~~l~~aG~~~i~~~les 174 (293)
.++++.+.|-......+.-. |+.. ....+..+++.|++.. +.+++++.. |+++ +++..+||+||+..+++++++
T Consensus 125 ~Ak~AK~~GSTRFCmGaAWR-D~~G-Rk~~fk~IlE~ikevr-~MgmEvCvTLGMv~--~qQAkeLKdAGLTAYNHNlDT 199 (380)
T KOG2900|consen 125 EAKEAKRNGSTRFCMGAAWR-DMKG-RKSAFKRILEMIKEVR-DMGMEVCVTLGMVD--QQQAKELKDAGLTAYNHNLDT 199 (380)
T ss_pred HHHHHHhcCCceeecchhhh-hhcc-chhHHHHHHHHHHHHH-cCCceeeeeecccc--HHHHHHHHhccceecccCccc
Confidence 99999999987776655543 3322 2345666666666542 457788765 8887 889999999999999999999
Q ss_pred chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCC--CCEEEeecCCCCCC-----
Q psy2895 175 VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHN--IDILTIGQYLMPSR----- 247 (293)
Q Consensus 175 s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~--~~~i~i~~~~~p~~----- 247 (293)
|.+.|.++-...++++++++++.++++ |+.++++-|+|+||.++|.+..+..+..+. +++++|+ .+.+.+
T Consensus 200 SREyYskvItTRtYDdRL~Ti~nvr~a--GikvCsGGIlGLGE~e~DriGlihtLatmp~HPESvPiN-~LvaikGTP~~ 276 (380)
T KOG2900|consen 200 SREYYSKVITTRTYDDRLQTIKNVREA--GIKVCSGGILGLGESEDDRIGLIHTLATMPPHPESVPIN-RLVAIKGTPMA 276 (380)
T ss_pred hhhhhcccceecchHHHHHHHHHHHHh--cceecccccccccccccceeeeeeeeccCCCCCcccccc-eEEecCCcccc
Confidence 999999988778999999999999999 999999999999999999999888887765 6788887 544422
Q ss_pred -------------CccccccccChhHHHHHH
Q psy2895 248 -------------LHLPVHRYLHPKFFEKFK 265 (293)
Q Consensus 248 -------------~~~a~~r~~~p~~~~~~~ 265 (293)
++++-+|+++|....++.
T Consensus 277 d~~~k~l~i~e~lR~IaTARIvMPKaiiRla 307 (380)
T KOG2900|consen 277 DEKSKKLQIDEILRTIATARIVMPKAIIRLA 307 (380)
T ss_pred hhhcccccHHHHHHHHhhhheechHHHHHHh
Confidence 677788999998877775
No 73
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=99.90 E-value=2.5e-22 Score=189.46 Aligned_cols=218 Identities=10% Similarity=0.121 Sum_probs=163.0
Q ss_pred eeEeeeeCcccCCCCcCcccCCCC--CCCCC---hhHHHHHHHHHHH-----CCCcEEEEeeecCCCCCCCChhHHHHHH
Q psy2895 61 VATFMIMGSICTRRCKFCNISHGR--PDPLD---IEEPKKIAYTINK-----LKLNYVVITSVNRDDLHDGGSSHFVSCI 130 (293)
Q Consensus 61 ~~~~~~~t~~C~~~C~fC~~~~~~--~~~~~---~eei~~~~~~~~~-----~G~~~i~l~gg~~~~l~~~~~~~~~~ll 130 (293)
..+|+.+ +.|+.+|.||.+.... ..... .+.+.++++.... .++..|+|+||+|..++ .+++.+++
T Consensus 51 ~~LYvHI-PfC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~fgGGTPs~l~---~~~l~~ll 126 (453)
T PRK13347 51 VSLYLHV-PFCRSLCWFCGCNTIITQRDAPVEAYVAALIREIRLVAASLPQRRRVSQLHWGGGTPTILN---PDQFERLM 126 (453)
T ss_pred eEEEEEe-CCccccCCCCCCcCcCccccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCcccccCC---HHHHHHHH
Confidence 3455543 6799999999987632 11222 3445555544332 25678999999864333 57899999
Q ss_pred HHHHhhCC---CcEEEEEc-CCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCc
Q psy2895 131 KHIRKLST---KIKIEILI-PDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNI 205 (293)
Q Consensus 131 ~~i~~~~~---~~~i~~~~-~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi 205 (293)
+.|++.++ +..+++.+ |+.++ ++.++.|+++|++++++|+|| ++++++.++|.++.+++.++++.++++ |+
T Consensus 127 ~~i~~~~~~~~~~e~tie~~p~~lt--~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~--G~ 202 (453)
T PRK13347 127 AALRDAFDFAPEAEIAVEIDPRTVT--AEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAA--GF 202 (453)
T ss_pred HHHHHhCCCCCCceEEEEeccccCC--HHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhc--CC
Confidence 99988643 34566644 56676 899999999999999999999 799999999999999999999999999 99
Q ss_pred e-eeEeEEeec-CCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCccc----cccccCh--hH----HHHHHHHHHHhcc
Q psy2895 206 L-TKSGIMVGL-GENDEEILTVIHDMRNHNIDILTIGQYLMPSRLHLP----VHRYLHP--KF----FEKFKKIAYKLGF 273 (293)
Q Consensus 206 ~-~~~~~ivG~-gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~~a----~~r~~~p--~~----~~~~~~~~~~~G~ 273 (293)
. ++.++|+|+ |||.+++.++++++.+++++++.++.+ ...+.... +...-+| ++ +..+.+...+.|+
T Consensus 203 ~~v~~dli~GlPgqt~e~~~~tl~~~~~l~p~~i~~y~l-~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy 281 (453)
T PRK13347 203 ESINFDLIYGLPHQTVESFRETLDKVIALSPDRIAVFGY-AHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGY 281 (453)
T ss_pred CcEEEeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecc-ccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCC
Confidence 5 899999999 999999999999999999999999744 22221111 1112223 22 3345566677899
Q ss_pred cchhcccccccccc
Q psy2895 274 KNVLVGSMIRSSYM 287 (293)
Q Consensus 274 ~~~~~~~~~~~~~~ 287 (293)
.++++.+|+|+.+.
T Consensus 282 ~~~~~~~far~~~~ 295 (453)
T PRK13347 282 VPIGLDHFALPDDE 295 (453)
T ss_pred EEEeccceeCCCch
Confidence 99999999997654
No 74
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=99.90 E-value=3.7e-22 Score=185.10 Aligned_cols=216 Identities=13% Similarity=0.133 Sum_probs=164.1
Q ss_pred eEeeeeCcccCCCCcCcccCCCC-C-C-CCC----hhHHHHHHHHHHH----CCCcEEEEeeecCCCCCCCChhHHHHHH
Q psy2895 62 ATFMIMGSICTRRCKFCNISHGR-P-D-PLD----IEEPKKIAYTINK----LKLNYVVITSVNRDDLHDGGSSHFVSCI 130 (293)
Q Consensus 62 ~~~~~~t~~C~~~C~fC~~~~~~-~-~-~~~----~eei~~~~~~~~~----~G~~~i~l~gg~~~~l~~~~~~~~~~ll 130 (293)
.+|+. -+.|..+|.||.|+... . . ... .+.+.++++.... ..++.|+|.||+|..++ .+.+.+++
T Consensus 21 ~lYiH-IPFC~~~C~yC~f~~~~~~~~~~~~~~~Y~~~l~~ei~~~~~~~~~~~i~siy~GGGTPs~L~---~~~L~~ll 96 (394)
T PRK08898 21 SLYVH-FPWCVRKCPYCDFNSHEWKDGGAIPEAAYLDALRADLEQALPLVWGRQVHTVFIGGGTPSLLS---AAGLDRLL 96 (394)
T ss_pred EEEEE-eCCccCcCCCCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhccCCceeEEEECCCCcCCCC---HHHHHHHH
Confidence 44443 38999999999997632 1 1 111 3445555554322 23678999999975443 57899999
Q ss_pred HHHHhhCCC---cEEEEEc-CCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCc
Q psy2895 131 KHIRKLSTK---IKIEILI-PDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNI 205 (293)
Q Consensus 131 ~~i~~~~~~---~~i~~~~-~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi 205 (293)
+.|++.+|- ..+++.+ |+.++ .+.++.|+++|++++++|+|| ++++++.|+|.++.++..++++.+++. +.
T Consensus 97 ~~i~~~~~~~~~~eit~E~~p~~~~--~e~L~~l~~~GvnrisiGvQS~~~~~L~~l~R~~~~~~~~~~i~~~~~~--~~ 172 (394)
T PRK08898 97 SDVRALLPLDPDAEITLEANPGTFE--AEKFAQFRASGVNRLSIGIQSFNDAHLKALGRIHDGAEARAAIEIAAKH--FD 172 (394)
T ss_pred HHHHHhCCCCCCCeEEEEECCCCCC--HHHHHHHHHcCCCeEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHh--CC
Confidence 999988743 4677754 66666 789999999999999999999 799999999999999999999999998 77
Q ss_pred eeeEeEEeec-CCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCcccccccc--Chh--H----HHHHHHHHHHhcccch
Q psy2895 206 LTKSGIMVGL-GENDEEILTVIHDMRNHNIDILTIGQYLMPSRLHLPVHRYL--HPK--F----FEKFKKIAYKLGFKNV 276 (293)
Q Consensus 206 ~~~~~~ivG~-gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~~a~~r~~--~p~--~----~~~~~~~~~~~G~~~~ 276 (293)
.+++++|+|+ |+|.+++.++++.+.++++++++++++ .+.+++. ..+.. .|+ . +..+.+...+.|+.++
T Consensus 173 ~v~~dlI~GlPgqt~~~~~~~l~~~~~l~p~~is~y~l-~~~~gT~-l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~y 250 (394)
T PRK08898 173 NFNLDLMYALPGQTLDEALADVETALAFGPPHLSLYHL-TLEPNTL-FAKFPPALPDDDASADMQDWIEARLAAAGYAHY 250 (394)
T ss_pred ceEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEeee-EECCCCh-hhhccCCCCChHHHHHHHHHHHHHHHHcCCchh
Confidence 8999999999 999999999999999999999999743 4444321 11211 222 1 3345566677899999
Q ss_pred hcccccccccc
Q psy2895 277 LVGSMIRSSYM 287 (293)
Q Consensus 277 ~~~~~~~~~~~ 287 (293)
++++|+|.++.
T Consensus 251 e~~~fa~~~~~ 261 (394)
T PRK08898 251 EVSAYAKPGRQ 261 (394)
T ss_pred ccccccCCCcc
Confidence 99999998765
No 75
>KOG2492|consensus
Probab=99.90 E-value=6.8e-23 Score=181.44 Aligned_cols=239 Identities=16% Similarity=0.317 Sum_probs=182.0
Q ss_pred ccCCCCceeEeccCChhcHHHHHHHHHhcCchh-----hhhh-cCCCCccc-ccc-CceeEeeeeCcccCCCCcCcccCC
Q psy2895 11 ILKKPNWIRVKLISNIDNFNKTKNILRANNLVT-----VCEE-ASCPNIGE-CFG-RGVATFMIMGSICTRRCKFCNISH 82 (293)
Q Consensus 11 ~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~-----l~~~-a~~~~~~~-~~~-~~~~~~~~~t~~C~~~C~fC~~~~ 82 (293)
|+.+...||.+. |+++|.+++.|++-..... +... ..+..... +.+ ..+.+|+-+.+||++-|+||.+|.
T Consensus 164 iL~~~kmVdiva--GPDaYrDLPrll~~~~~g~~~in~~Lsldetyadv~pvr~~~~s~tAFvSiMRGCdNMCtyCiVpf 241 (552)
T KOG2492|consen 164 ILEREKMVDIVA--GPDAYRDLPRLLAVARGGQNGINVLLSLDETYADVQPVRVSSSSTTAFVSIMRGCDNMCTYCIVPF 241 (552)
T ss_pred Hhhhhhceeeee--CchhhhhhHHHHHHHhccCCceeEEEeccchhcccceeeccCccchhHHHHHhccccccceEEEec
Confidence 455556788877 8899999999986432211 0000 00001111 111 224456667899999999999987
Q ss_pred --CCCCCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCC-------------------------hhHHHHHHHHHHh
Q psy2895 83 --GRPDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGG-------------------------SSHFVSCIKHIRK 135 (293)
Q Consensus 83 --~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~-------------------------~~~~~~ll~~i~~ 135 (293)
|+.+.++.+.|+++++.+.+.|+++|.|.|++..++.+.. --.|..|++.+..
T Consensus 242 trGreRsrpi~siv~ev~~L~~qG~KeVTLLGQNVNSyrD~s~~~~~~a~~~~~~~GFst~yK~K~gGl~Fa~LLd~vs~ 321 (552)
T KOG2492|consen 242 TRGRERSRPIESIVEEVKRLAEQGVKEVTLLGQNVNSYRDNSAVQFSSAVPTNLSPGFSTVYKPKQGGLRFAHLLDQVSR 321 (552)
T ss_pred cCCcccCCchHHHHHHHHHHhhcCceeeeeecccccccccchhhhhccCCccccCCCceeeecccCCCccHHHHHHHHhh
Confidence 5557788999999999999999999999999854332211 1258999999999
Q ss_pred hCCCcEEEEEcC---CCcCcHHHHHHHHHHc--CCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeE
Q psy2895 136 LSTKIKIEILIP---DFRNQINHVLKIFKQA--LPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKS 209 (293)
Q Consensus 136 ~~~~~~i~~~~~---~~~~~~~e~l~~l~~a--G~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~ 209 (293)
..|++++++.+| |+. +|+|+.+++. -+..+++++|| +.++++.|+|+++.+.+++.+..++...||...++
T Consensus 322 ~~PemR~RFTSPHPKDfp---devl~li~~rdnickqihlPAqSgds~vLE~mrRgysreayl~lv~~Irs~iPgVglss 398 (552)
T KOG2492|consen 322 ADPEMRIRFTSPHPKDFP---DEVLELIRDRDNICKQIHLPAQSGDSRVLEIMRRGYSREAYLELVAHIRSMIPGVGLSS 398 (552)
T ss_pred hCcceEEEecCCCCCCCh---HHHHHHHHhCcchhheeeccccCCchHHHHHHHccCChHhhhhHHHHHHhhCCCCccee
Confidence 999999999885 665 5777777663 34557889999 89999999999999999999999999999999999
Q ss_pred eEEeec-CCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCccccccc
Q psy2895 210 GIMVGL-GENDEEILTVIHDMRNHNIDILTIGQYLMPSRLHLPVHRY 255 (293)
Q Consensus 210 ~~ivG~-gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~~a~~r~ 255 (293)
++|.|+ |||++|.+.++.++++.|.+.+.+++|. -..++.+-.|+
T Consensus 399 dfitgfCgeTeedhq~t~sLlrqVgYdv~~lFays-mR~kT~ay~r~ 444 (552)
T KOG2492|consen 399 DFITGFCGETEEDHQYTVSLLRQVGYDVVFLFAYS-MREKTRAYHRL 444 (552)
T ss_pred eeEecccCCChHHHHHHHHHHHHhccCeeeeEEee-ecccchhhhhh
Confidence 999999 9999999999999999999999888553 33444444444
No 76
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=99.90 E-value=4.5e-22 Score=189.75 Aligned_cols=177 Identities=13% Similarity=0.170 Sum_probs=146.0
Q ss_pred eeeeCcccCCCCcCcccCCC--CCCCCChhHHHHHHHHHHH-CCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhC-CC
Q psy2895 64 FMIMGSICTRRCKFCNISHG--RPDPLDIEEPKKIAYTINK-LKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLS-TK 139 (293)
Q Consensus 64 ~~~~t~~C~~~C~fC~~~~~--~~~~~~~eei~~~~~~~~~-~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~-~~ 139 (293)
.+..|+|||++|+||+.+.. +-+..+++.|+++++.+.+ .|++.+.+...+. . .+.+++.++++.+.++. .+
T Consensus 196 ~i~tSRGCp~~C~FC~~~~~~~~~R~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f-~---~~~~~~~~l~~~l~~~~~l~ 271 (497)
T TIGR02026 196 VPNFARGCPFTCNFCSQWKFWRRYRHRDPKKFVDEIEWLVRTHGVGFFILADEEP-T---INRKKFQEFCEEIIARNPIS 271 (497)
T ss_pred eeeccCCCCCCCCCCCCCCCCceeecCCHHHHHHHHHHHHHHcCCCEEEEEeccc-c---cCHHHHHHHHHHHHhcCCCC
Confidence 34568999999999998762 2356899999999999864 7999998876653 1 23578899999998764 23
Q ss_pred cEEEEEc-CCCc-CcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-
Q psy2895 140 IKIEILI-PDFR-NQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL- 215 (293)
Q Consensus 140 ~~i~~~~-~~~~-~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~- 215 (293)
+.+.+.+ .+.+ .+ ++.++.|+++|+.++.+|+|| ++++++.|+++++.++..++++.++++ |+.+.+++|+|+
T Consensus 272 i~w~~~~r~~~i~~d-~ell~~l~~aG~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~--Gi~~~~~~I~G~P 348 (497)
T TIGR02026 272 VTWGINTRVTDIVRD-ADILHLYRRAGLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQH--NILSEAQFITGFE 348 (497)
T ss_pred eEEEEecccccccCC-HHHHHHHHHhCCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHC--CCcEEEEEEEECC
Confidence 3343433 2322 22 789999999999999999999 899999999999999999999999999 999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCC
Q psy2895 216 GENDEEILTVIHDMRNHNIDILTIGQYLMPSRL 248 (293)
Q Consensus 216 gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~ 248 (293)
|||.+++.++++++.+++++++.++ .+.|.|+
T Consensus 349 ~et~e~~~~t~~~~~~l~~~~~~~~-~~tP~PG 380 (497)
T TIGR02026 349 NETDETFEETYRQLLDWDPDQANWL-MYTPWPF 380 (497)
T ss_pred CCCHHHHHHHHHHHHHcCCCceEEE-EecCCCC
Confidence 9999999999999999999999887 6667663
No 77
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=99.89 E-value=7.5e-22 Score=187.49 Aligned_cols=172 Identities=16% Similarity=0.216 Sum_probs=143.0
Q ss_pred eeeCcccCCCCcCcccCC---CC-CCCCChhHHHHHHHHHHHC--CCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCC
Q psy2895 65 MIMGSICTRRCKFCNISH---GR-PDPLDIEEPKKIAYTINKL--KLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLST 138 (293)
Q Consensus 65 ~~~t~~C~~~C~fC~~~~---~~-~~~~~~eei~~~~~~~~~~--G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~ 138 (293)
+..++||+++|+||+++. ++ .+.+++|.|+++++.+.+. |++.+++.+.+. ..+.+++.++++.+++.
T Consensus 200 i~tsRGCp~~C~FC~~~~~~~g~~~r~rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f----~~~~~~~~~l~~~l~~~-- 273 (472)
T TIGR03471 200 LYTGRGCPSKCTFCLWPQTVGGHRYRTRSAESVIEEVKYALENFPEVREFFFDDDTF----TDDKPRAEEIARKLGPL-- 273 (472)
T ss_pred EEecCCCCCCCCCCCCCccCCCCceEeCCHHHHHHHHHHHHHhcCCCcEEEEeCCCC----CCCHHHHHHHHHHHhhc--
Confidence 456899999999998764 22 2568999999999998775 789888865432 22357888999999875
Q ss_pred CcEEEEEcCCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-C
Q psy2895 139 KIKIEILIPDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-G 216 (293)
Q Consensus 139 ~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-g 216 (293)
++.+...+....+ ++.++.|+++|++++.+|+|| ++++++.|+++++.++..+.++.++++ |+.+.+++|+|+ |
T Consensus 274 ~i~~~~~~~~~~~--~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~--Gi~v~~~~IiGlPg 349 (472)
T TIGR03471 274 GVTWSCNARANVD--YETLKVMKENGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKL--GIKVHGTFILGLPG 349 (472)
T ss_pred CceEEEEecCCCC--HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHC--CCeEEEEEEEeCCC
Confidence 3444443332244 899999999999999999999 899999999999999999999999999 999999999999 9
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEeecCCCCCC
Q psy2895 217 ENDEEILTVIHDMRNHNIDILTIGQYLMPSR 247 (293)
Q Consensus 217 Et~ed~~~~l~~l~~l~~~~i~i~~~~~p~~ 247 (293)
||.+++.++++++.+++++.+.++ .+.|.|
T Consensus 350 et~e~~~~ti~~~~~l~~~~~~~~-~l~P~P 379 (472)
T TIGR03471 350 ETRETIRKTIDFAKELNPHTIQVS-LAAPYP 379 (472)
T ss_pred CCHHHHHHHHHHHHhcCCCceeee-ecccCC
Confidence 999999999999999999998887 666665
No 78
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=99.88 E-value=2.3e-21 Score=163.91 Aligned_cols=177 Identities=18% Similarity=0.317 Sum_probs=145.7
Q ss_pred EeeeeCcccCCCCcCcccCCCC--CCCCChhHHHHHHHHHHHCC-----CcEEEEeeecCCCCCCCChhHHHHHHHHHHh
Q psy2895 63 TFMIMGSICTRRCKFCNISHGR--PDPLDIEEPKKIAYTINKLK-----LNYVVITSVNRDDLHDGGSSHFVSCIKHIRK 135 (293)
Q Consensus 63 ~~~~~t~~C~~~C~fC~~~~~~--~~~~~~eei~~~~~~~~~~G-----~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~ 135 (293)
.++.+|++|+++|.||..+... ....+++++.+.++.+.+.| ++.+.++||++...+ ...+.++++.+++
T Consensus 3 ~~i~~t~~C~~~C~yC~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg~~~~~~---~~~~~~~~~~~~~ 79 (216)
T smart00729 3 ALYIITRGCPRRCTFCSFPSARGKLRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLS---PEQLEELLEAIRE 79 (216)
T ss_pred cEEEecCchhccCCcCCcCccccchhHHHHHHHHHHHHHHHhcccCCcceeEEEECCCCCCCCC---HHHHHHHHHHHHH
Confidence 3566799999999999998744 34567899999999886654 467888899863221 2358888888887
Q ss_pred hCC---CcEEEEEcC-CCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCC-ceeeE
Q psy2895 136 LST---KIKIEILIP-DFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPN-ILTKS 209 (293)
Q Consensus 136 ~~~---~~~i~~~~~-~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pg-i~~~~ 209 (293)
..+ ...+.+.++ +..+ ++.++.|+++|++.+.+++++ ++++++.++++.++++++++++.++++ | +.+.+
T Consensus 80 ~~~~~~~~~~~~~tn~~~~~--~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--g~~~v~~ 155 (216)
T smart00729 80 ILGLADDVEITIETRPGTLT--EELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREA--GPIKVST 155 (216)
T ss_pred hCCCCCCeEEEEEeCcccCC--HHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCCHHHHHHHHHHHHHh--CCcceEE
Confidence 754 345666665 5555 889999999999999999998 799999999889999999999999999 9 88999
Q ss_pred eEEeec-CCCHHHHHHHHHHHHhCCCCEEEeecCCCCCC
Q psy2895 210 GIMVGL-GENDEEILTVIHDMRNHNIDILTIGQYLMPSR 247 (293)
Q Consensus 210 ~~ivG~-gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~ 247 (293)
.+++|+ +++.+++.++++++++++++.+.++++ .|.+
T Consensus 156 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~p~~ 193 (216)
T smart00729 156 DLIVGLPGETEEDFEETLKLLKELGPDRVSIFPL-SPRP 193 (216)
T ss_pred eEEecCCCCCHHHHHHHHHHHHHcCCCeEEeeee-eeCC
Confidence 999999 799999999999999999999988744 4544
No 79
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=99.87 E-value=1.8e-20 Score=174.05 Aligned_cols=222 Identities=12% Similarity=0.190 Sum_probs=165.3
Q ss_pred eeEeeeeCcccCCCCcCcccCCCC-CCCCC----hhHHHHHHHHHHHC-----CCcEEEEeeecCCCCCCCChhHHHHHH
Q psy2895 61 VATFMIMGSICTRRCKFCNISHGR-PDPLD----IEEPKKIAYTINKL-----KLNYVVITSVNRDDLHDGGSSHFVSCI 130 (293)
Q Consensus 61 ~~~~~~~t~~C~~~C~fC~~~~~~-~~~~~----~eei~~~~~~~~~~-----G~~~i~l~gg~~~~l~~~~~~~~~~ll 130 (293)
...|+- -+.|...|.||.++... ..... .+-+.++++..... -++.|++.||+|.-++ .+.+..++
T Consensus 35 ~slYiH-iPFC~~~C~YC~fn~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GGGTPslL~---~~~l~~ll 110 (416)
T COG0635 35 LSLYIH-IPFCVSKCPYCDFNSHVTKRGQPVDEYLDALLEEIELVAALLGGQREVKTIYFGGGTPSLLS---PEQLERLL 110 (416)
T ss_pred eEEEEE-cccccccCCCCCCeeeccCCCChHHHHHHHHHHHHHHHHhhcCCCCeEEEEEECCCccccCC---HHHHHHHH
Confidence 445554 48999999999998632 11112 22333444433332 2678899999864333 57888888
Q ss_pred HHHHhhCC--C--cEEEEE-cCCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCC
Q psy2895 131 KHIRKLST--K--IKIEIL-IPDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPN 204 (293)
Q Consensus 131 ~~i~~~~~--~--~~i~~~-~~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pg 204 (293)
..|++.++ . ..|++- .|+..+ .+.++.++++|++|+++|+|+ .+++++.++|.|+.++..+++..+++. |
T Consensus 111 ~~l~~~~~~~~~~~EitiE~nP~~~~--~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~--g 186 (416)
T COG0635 111 KALRELFNDLDPDAEITIEANPGTVE--AEKFKALKEAGVNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKA--G 186 (416)
T ss_pred HHHHHhcccCCCCceEEEEeCCCCCC--HHHHHHHHHcCCCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHc--C
Confidence 88887762 2 455553 366666 899999999999999999999 799999999999999999999999999 9
Q ss_pred c-eeeEeEEeec-CCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCccc-----cccccChhH------HHHHHHHHHHh
Q psy2895 205 I-LTKSGIMVGL-GENDEEILTVIHDMRNHNIDILTIGQYLMPSRLHLP-----VHRYLHPKF------FEKFKKIAYKL 271 (293)
Q Consensus 205 i-~~~~~~ivG~-gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~~a-----~~r~~~p~~------~~~~~~~~~~~ 271 (293)
+ .++.|+|+|+ ++|.+++.++++.+.++++++++++++.. .+++.. -.. ..|+. +....+...+.
T Consensus 187 ~~~in~DLIyglP~QT~~~~~~~l~~a~~l~pdhis~y~L~~-~p~t~~~~~~~~~~-~lP~~d~~~~~~~~~~e~L~~~ 264 (416)
T COG0635 187 FTSINIDLIYGLPGQTLESLKEDLEQALELGPDHLSLYSLAI-EPGTKFAQRKIKGK-ALPDEDEKADMYELVEELLEKA 264 (416)
T ss_pred CCcEEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEEeeeec-CCCchhhhhcccCC-CCcChHHHHHHHHHHHHHHHHC
Confidence 9 6999999999 99999999999999999999999975422 121111 111 23332 35556677788
Q ss_pred cccchhcccccccccccCCCC
Q psy2895 272 GFKNVLVGSMIRSSYMADKHF 292 (293)
Q Consensus 272 G~~~~~~~~~~~~~~~~~~~~ 292 (293)
|+.++++.||++..+...+.|
T Consensus 265 Gy~~yeisnfa~~~~e~~hNl 285 (416)
T COG0635 265 GYRQYEISNFAKPGGECRHNL 285 (416)
T ss_pred CCcEEeechhcCcchHHHhhh
Confidence 999999999999777766543
No 80
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=99.86 E-value=5.9e-20 Score=166.69 Aligned_cols=182 Identities=20% Similarity=0.296 Sum_probs=144.5
Q ss_pred cccccCceeE-eeeeCcccCCCCcCcccCCC----CCCCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHH
Q psy2895 54 GECFGRGVAT-FMIMGSICTRRCKFCNISHG----RPDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVS 128 (293)
Q Consensus 54 ~~~~~~~~~~-~~~~t~~C~~~C~fC~~~~~----~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ 128 (293)
.+.|+..+.+ .+.+|++||++|.||..... +...++.|++.+.++.+.+.|++.|.|+||+| .+ . ..+.+
T Consensus 6 ~d~~gr~i~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~ls~eei~~li~~~~~~Gv~~I~~tGGEP-ll-r---~dl~~ 80 (329)
T PRK13361 6 VDSFGRTVTYLRLSVTDRCDFRCVYCMSEDPCFLPRDQVLSLEELAWLAQAFTELGVRKIRLTGGEP-LV-R---RGCDQ 80 (329)
T ss_pred cCCCCCccCeEEEEecCCccccCCCCCCCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECcCC-Cc-c---ccHHH
Confidence 3456666544 35679999999999985432 12469999999999999999999999999996 33 2 35778
Q ss_pred HHHHHHhhCCCc-EEEEEcCCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCc-
Q psy2895 129 CIKHIRKLSTKI-KIEILIPDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNI- 205 (293)
Q Consensus 129 ll~~i~~~~~~~-~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi- 205 (293)
+++.+++.. ++ .+.+.|++..- .+.++.|+++|++++++++++ +++.|++++++.+++++++.++.++++ |+
T Consensus 81 li~~i~~~~-~l~~i~itTNG~ll--~~~~~~L~~aGl~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~--Gi~ 155 (329)
T PRK13361 81 LVARLGKLP-GLEELSLTTNGSRL--ARFAAELADAGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAA--GFE 155 (329)
T ss_pred HHHHHHhCC-CCceEEEEeChhHH--HHHHHHHHHcCCCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHc--CCC
Confidence 899888753 33 57777776543 568899999999999999999 699999999888999999999999999 98
Q ss_pred eeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEeecCCCCCC
Q psy2895 206 LTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIGQYLMPSR 247 (293)
Q Consensus 206 ~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~ 247 (293)
.+...+++--|++.+|+.++++++++++++...+ ++ .|..
T Consensus 156 ~v~in~v~~~g~N~~ei~~~~~~~~~~gi~~~~i-e~-mP~g 195 (329)
T PRK13361 156 RIKLNAVILRGQNDDEVLDLVEFCRERGLDIAFI-EE-MPLG 195 (329)
T ss_pred ceEEEEEEECCCCHHHHHHHHHHHHhcCCeEEEE-ec-ccCC
Confidence 6766655433899999999999999999986544 24 4543
No 81
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=99.85 E-value=2e-19 Score=168.31 Aligned_cols=213 Identities=11% Similarity=0.150 Sum_probs=147.7
Q ss_pred eEeeeeCcccCCCCcCcccCCCC-CCCC---ChhHHHHHHHHHHHCC--CcEEEEeeecCCCCCCCChhHHHHHHHHHHh
Q psy2895 62 ATFMIMGSICTRRCKFCNISHGR-PDPL---DIEEPKKIAYTINKLK--LNYVVITSVNRDDLHDGGSSHFVSCIKHIRK 135 (293)
Q Consensus 62 ~~~~~~t~~C~~~C~fC~~~~~~-~~~~---~~eei~~~~~~~~~~G--~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~ 135 (293)
.+|+. =+.|+.+|.||.++... .... -.+.+.++++.+.+.| ++.|++.||.| ++. .+.+.++++.+++
T Consensus 54 ~LYvH-IPFC~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~siy~GGGTP-s~l---~~~L~~ll~~i~~ 128 (433)
T PRK08629 54 MLYAH-VPFCHTLCPYCSFHRFYFKEDKARAYFISLRKEMEMVKELGYDFESMYVGGGTT-TIL---EDELAKTLELAKK 128 (433)
T ss_pred EEEEE-eCCccCcCCCCCCcCcCCCcchHHHHHHHHHHHHHHHHhcCCceEEEEECCCcc-ccC---HHHHHHHHHHHHH
Confidence 34443 28999999999998631 1111 1466777777666554 56788888885 332 4678889999988
Q ss_pred hCCCcEEEEEc-CCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHH---HHHHHHHHHhCCCceeeEe
Q psy2895 136 LSTKIKIEILI-PDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHS---LNLLKNFKKLYPNILTKSG 210 (293)
Q Consensus 136 ~~~~~~i~~~~-~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~---l~~i~~~~~~~pgi~~~~~ 210 (293)
.++-..+++.+ |+.++ ++.++.|+++ ++++++|+|| ++++++.|+|.|+.++. ++.++.+++. +..++++
T Consensus 129 ~f~i~eis~E~~P~~lt--~e~L~~l~~~-vnrlsiGVQS~~d~vLk~~gR~h~~~~~~~~~~~l~~~~~~--~~~v~~D 203 (433)
T PRK08629 129 LFSIKEVSCESDPNHLD--PPKLKQLKGL-IDRLSIGVQSFNDDILKMVDRYEKFGSGQETFEKIMKAKGL--FPIINVD 203 (433)
T ss_pred hCCCceEEEEeCcccCC--HHHHHHHHHh-CCeEEEecCcCCHHHHHHcCCCCChhHHHHHHHHHHHHhcc--CCeEEEE
Confidence 76433566644 67676 8999999999 9999999999 79999999998876555 4555555444 3467899
Q ss_pred EEeec-CCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCccc--cccc--cChhHHHHHHHH---HHHhcccchhccccc
Q psy2895 211 IMVGL-GENDEEILTVIHDMRNHNIDILTIGQYLMPSRLHLP--VHRY--LHPKFFEKFKKI---AYKLGFKNVLVGSMI 282 (293)
Q Consensus 211 ~ivG~-gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~~a--~~r~--~~p~~~~~~~~~---~~~~G~~~~~~~~~~ 282 (293)
+|+|+ |||.+++.++++++.++++++++++++. ..+++.. ..++ ...+....+... ..+ |+.++...+|+
T Consensus 204 lI~GlPgqT~e~~~~~l~~~~~l~p~~is~y~L~-~~~~t~~~~~~~~~~p~~d~~~~~~~~~~~~l~-Gy~~~s~~~f~ 281 (433)
T PRK08629 204 LIFNFPGQTDEVLQHDLDIAKRLDPRQITTYPLM-KSHQTRKSVKGSLGASQKDNERQYYQIINELFG-QYNQLSAWAFS 281 (433)
T ss_pred EEccCCCCCHHHHHHHHHHHHhCCCCEEEEccce-eccCchhhhcCCCCCcCHHHHHHHHHHHHHHHC-CCeEecccccC
Confidence 99999 9999999999999999999999998443 3332211 0112 122222222222 223 89887777777
Q ss_pred cccc
Q psy2895 283 RSSY 286 (293)
Q Consensus 283 ~~~~ 286 (293)
++..
T Consensus 282 ~~~~ 285 (433)
T PRK08629 282 KKND 285 (433)
T ss_pred CCCc
Confidence 6543
No 82
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=99.84 E-value=1.5e-19 Score=161.86 Aligned_cols=190 Identities=17% Similarity=0.198 Sum_probs=138.1
Q ss_pred ccccccCceeEe-eeeCcccCC--------CCcCcccCCCCC-C---CCChhHHHHHHHHHH----HCCCcEEEEeeecC
Q psy2895 53 IGECFGRGVATF-MIMGSICTR--------RCKFCNISHGRP-D---PLDIEEPKKIAYTIN----KLKLNYVVITSVNR 115 (293)
Q Consensus 53 ~~~~~~~~~~~~-~~~t~~C~~--------~C~fC~~~~~~~-~---~~~~eei~~~~~~~~----~~G~~~i~l~gg~~ 115 (293)
++++||.++.=+ +-.+-.||+ .|.||+.....+ . ..+.++|.+.++... ..+...++|+||++
T Consensus 9 ~~~~~g~~v~k~~~~~g~~cpnrdg~~~~~gC~FC~~~~~~~~~~~~~~~~~~i~~qi~~~~~~~~~~~~~~iyf~ggt~ 88 (302)
T TIGR01212 9 LKERYGQKVFKITLHGGFSCPNRDGTKGRGGCTFCNDASRPIFADEYTQARIPIKEQIKKQMKKYKKDKKFIAYFQAYTN 88 (302)
T ss_pred HHHHcCCceEEeecCCCCCCCCCCCCCCCCCcccCCCCCCccccccccccCCCHHHHHHHHHHHhhccCEEEEEEECCCc
Confidence 345666654332 334678998 699999865322 1 133444444444332 32333478899886
Q ss_pred CCCCCCChhHHHHHHHHHHhhCCCcEEEEEc-CCCcCc-HHHHHHHHHHcCC-Ceeeecccc-chHHHhhcCCCCCHHHH
Q psy2895 116 DDLHDGGSSHFVSCIKHIRKLSTKIKIEILI-PDFRNQ-INHVLKIFKQALP-DVLNHNIET-VPRLYKKVRPGSDYKHS 191 (293)
Q Consensus 116 ~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~-~~~~~~-~~e~l~~l~~aG~-~~i~~~les-s~~~~~~i~~~~~~e~~ 191 (293)
..+ +.+.+.++++.+++......+.+.+ |+.+++ ..+.++.++++|+ .++.+|+|| ++++++.|+|+++.+++
T Consensus 89 t~l---~~~~L~~l~~~i~~~~~~~~isi~trpd~l~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~Rg~t~~~~ 165 (302)
T TIGR01212 89 TYA---PVEVLKEMYEQALSYDDVVGLSVGTRPDCVPDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKINRGHDFACY 165 (302)
T ss_pred CCC---CHHHHHHHHHHHhCCCCEEEEEEEecCCcCCHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHHcCcChHHHH
Confidence 433 3688999999998742224666655 666651 1234455556799 579999999 79999999999999999
Q ss_pred HHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCC
Q psy2895 192 LNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHDMRNHNIDILTIGQYLMPSRL 248 (293)
Q Consensus 192 l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~ 248 (293)
.++++.++++ |+.+++++|+|+ |||.+++.++++++.+++++.+.++ .+.|.++
T Consensus 166 ~~ai~~l~~~--gi~v~~~lI~GlPget~e~~~~t~~~l~~l~~d~i~i~-~l~~~pg 220 (302)
T TIGR01212 166 VDAVKRARKR--GIKVCSHVILGLPGEDREEMMETAKIVSLLDVDGIKIH-PLHVVKG 220 (302)
T ss_pred HHHHHHHHHc--CCEEEEeEEECCCCCCHHHHHHHHHHHHhcCCCEEEEE-EEEecCC
Confidence 9999999999 999999999999 9999999999999999999999997 4455553
No 83
>PRK01254 hypothetical protein; Provisional
Probab=99.84 E-value=1.5e-19 Score=171.56 Aligned_cols=183 Identities=15% Similarity=0.162 Sum_probs=141.6
Q ss_pred EeeeeCcccCCCCcCcccCCCCC---CCCChhHHHHHHHHHHHC--CCcEEE--EeeecCCCCC----------------
Q psy2895 63 TFMIMGSICTRRCKFCNISHGRP---DPLDIEEPKKIAYTINKL--KLNYVV--ITSVNRDDLH---------------- 119 (293)
Q Consensus 63 ~~~~~t~~C~~~C~fC~~~~~~~---~~~~~eei~~~~~~~~~~--G~~~i~--l~gg~~~~l~---------------- 119 (293)
.++.++.||+.+|+||+++..+. +++|.|+|+++++.+.+. |+++++ |+|.+...+.
T Consensus 374 ~sV~i~RGC~g~CSFCaI~~hqGr~irSRS~esIL~Ea~~L~~~~pGfKgii~DLgGptaN~YG~~c~d~~~~~~C~~~~ 453 (707)
T PRK01254 374 FSVNIMRGCFGGCSFCSITEHEGRIIQSRSEESIINEIEAIRDKVPGFTGVISDLGGPTANMYRLRCKSPRAEQTCRRLS 453 (707)
T ss_pred EEEEEccCCCCCCCccccccccCCeeeeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCcccccccccccccccccccccc
Confidence 45667899999999999987433 578999999999999864 999998 7776643221
Q ss_pred ----------CCChhHHHHHHHHHHhhCCCc-EEEEEc--C-CCcCcHHHHHHHHHHcCCC-eeeecccc-chHHHhhcC
Q psy2895 120 ----------DGGSSHFVSCIKHIRKLSTKI-KIEILI--P-DFRNQINHVLKIFKQALPD-VLNHNIET-VPRLYKKVR 183 (293)
Q Consensus 120 ----------~~~~~~~~~ll~~i~~~~~~~-~i~~~~--~-~~~~~~~e~l~~l~~aG~~-~i~~~les-s~~~~~~i~ 183 (293)
..+...+.+|++.|++. |++ .+.+.+ + ++....++.++.|.+..+- .+.+++|+ ++++++.|+
T Consensus 454 Cl~P~~C~nL~~dh~~l~eLLrkLr~I-pGVKkVrI~SgiR~Dl~l~d~elIeel~~~hV~g~LkVppEH~Sd~VLk~M~ 532 (707)
T PRK01254 454 CVYPDICPHLDTDHEPTINLYRRARDL-KGIKKILIASGVRYDLAVEDPRYVKELVTHHVGGYLKIAPEHTEEGPLSKMM 532 (707)
T ss_pred ccCcccccccCCCHHHHHHHHHHHHhC-CCceEEEEEcCCCccccccCHHHHHHHHHhCCccccccccccCCHHHHHHhC
Confidence 11235789999999874 343 666655 3 5442127789999887665 57889999 899999999
Q ss_pred CC--CCHHHHHHHHHHHHHhCC-CceeeEeEEeec-CCCHHHHHHHHHHHHhCCCCEEEeecCCCCCC
Q psy2895 184 PG--SDYKHSLNLLKNFKKLYP-NILTKSGIMVGL-GENDEEILTVIHDMRNHNIDILTIGQYLMPSR 247 (293)
Q Consensus 184 ~~--~~~e~~l~~i~~~~~~~p-gi~~~~~~ivG~-gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~ 247 (293)
++ ++++++.+.++.+++..| +..+.+++|+|+ |||++|++++++++++++++.-.+. .+.|.|
T Consensus 533 Kp~~~~~e~F~e~f~rirk~~gk~q~LipyfIvGhPGeTeeDf~eLaefLkel~f~~eQVQ-~FTPtP 599 (707)
T PRK01254 533 KPGMGSYDRFKELFDKYSKEAGKEQYLIPYFISAHPGTTDEDMVNLALWLKKNRFRLDQVQ-NFYPSP 599 (707)
T ss_pred CCCcccHHHHHHHHHHHHHHCCCCeEEEEeEEEECCCCCHHHHHHHHHHHHHhCCCcceee-eeecCC
Confidence 76 689999999999988876 566778999999 9999999999999999987655443 334544
No 84
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=99.84 E-value=3.2e-19 Score=162.21 Aligned_cols=174 Identities=17% Similarity=0.243 Sum_probs=141.1
Q ss_pred cccccCceeE-eeeeCcccCCCCcCcccCCC-----CCCCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHH
Q psy2895 54 GECFGRGVAT-FMIMGSICTRRCKFCNISHG-----RPDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFV 127 (293)
Q Consensus 54 ~~~~~~~~~~-~~~~t~~C~~~C~fC~~~~~-----~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~ 127 (293)
.+.|+..+.+ .+.+|.+||.+|.||..... ....++.+++.+.++.+.+.|++.|.|+||+| .+ . ..+.
T Consensus 9 ~d~~~r~~~~l~i~vT~~Cnl~C~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tGGEP-ll-~---~~l~ 83 (331)
T PRK00164 9 IDRFGRKFTYLRISVTDRCNFRCTYCMPEGYLPFLPKEELLSLEEIERLVRAFVALGVRKVRLTGGEP-LL-R---KDLE 83 (331)
T ss_pred ccCCCCccCeEEEEEcCCcCcCCCCCCCccCCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEECCCC-cC-c---cCHH
Confidence 4456666444 46679999999999987642 23569999999999999899999999999995 33 2 3577
Q ss_pred HHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCc-
Q psy2895 128 SCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNI- 205 (293)
Q Consensus 128 ~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi- 205 (293)
++++.+++..+...+.+.|+++.- .+.++.|+++|++++.+++++ +++.++.+++..+++++++.++.++++ |+
T Consensus 84 ~li~~i~~~~~~~~i~itTNG~ll--~~~~~~L~~agl~~i~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~--g~~ 159 (331)
T PRK00164 84 DIIAALAALPGIRDLALTTNGYLL--ARRAAALKDAGLDRVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAA--GLT 159 (331)
T ss_pred HHHHHHHhcCCCceEEEEcCchhH--HHHHHHHHHcCCCEEEEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHC--CCC
Confidence 888888875333467887876543 567899999999999999999 789999999888999999999999999 88
Q ss_pred eeeEeEEeecCCCHHHHHHHHHHHHhCCCCE
Q psy2895 206 LTKSGIMVGLGENDEEILTVIHDMRNHNIDI 236 (293)
Q Consensus 206 ~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~ 236 (293)
.+...+++--|.+.+++.+.++++++++++.
T Consensus 160 ~v~i~~vv~~g~n~~ei~~l~~~~~~~gv~v 190 (331)
T PRK00164 160 PVKVNAVLMKGVNDDEIPDLLEWAKDRGIQL 190 (331)
T ss_pred cEEEEEEEECCCCHHHHHHHHHHHHhCCCeE
Confidence 7776665533889999999999999999864
No 85
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=99.83 E-value=4.7e-19 Score=161.33 Aligned_cols=180 Identities=20% Similarity=0.296 Sum_probs=143.4
Q ss_pred cccCceeE-eeeeCcccCCCCcCcccCC-C-----CCCCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHH
Q psy2895 56 CFGRGVAT-FMIMGSICTRRCKFCNISH-G-----RPDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVS 128 (293)
Q Consensus 56 ~~~~~~~~-~~~~t~~C~~~C~fC~~~~-~-----~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ 128 (293)
.||..+.+ .+.+|++||.+|.||.... . ....++.+++.+.++.+.+.|++.|.|+||+| .+ . .++.+
T Consensus 4 ~~gr~~~~l~i~vT~~CNl~C~yC~~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gv~~V~ltGGEP-ll-~---~~l~~ 78 (334)
T TIGR02666 4 RFGRRIDYLRISVTDRCNLRCVYCMPEGGGLDFLPKEELLTFEEIERLVRAFVGLGVRKVRLTGGEP-LL-R---KDLVE 78 (334)
T ss_pred CCCCccCeEEEEecCccCcCCCCCCCCcCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECccc-cc-c---CCHHH
Confidence 45555444 3567999999999999865 2 12469999999999999999999999999996 23 2 35778
Q ss_pred HHHHHHhhCCCc-EEEEEcCCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCC-CCCHHHHHHHHHHHHHhCCCc
Q psy2895 129 CIKHIRKLSTKI-KIEILIPDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRP-GSDYKHSLNLLKNFKKLYPNI 205 (293)
Q Consensus 129 ll~~i~~~~~~~-~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~-~~~~e~~l~~i~~~~~~~pgi 205 (293)
+++.+++. +++ .+.+.|+++.. .+.++.|+++|++++.+++++ .++.++.+++ +.+++++++.++.++++ |+
T Consensus 79 li~~i~~~-~gi~~v~itTNG~ll--~~~~~~L~~~gl~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~--G~ 153 (334)
T TIGR02666 79 LVARLAAL-PGIEDIALTTNGLLL--ARHAKDLKEAGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAA--GL 153 (334)
T ss_pred HHHHHHhc-CCCCeEEEEeCchhH--HHHHHHHHHcCCCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHc--CC
Confidence 88888763 345 67787776654 678999999999999999999 6899999985 56999999999999999 99
Q ss_pred e-eeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEeecCCCCCC
Q psy2895 206 L-TKSGIMVGLGENDEEILTVIHDMRNHNIDILTIGQYLMPSR 247 (293)
Q Consensus 206 ~-~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~ 247 (293)
. +...+++.-|.+.+++.+.++++++++++ +.+..++ |..
T Consensus 154 ~~v~in~vv~~g~n~~ei~~l~~~~~~~gv~-~~~ie~m-p~~ 194 (334)
T TIGR02666 154 EPVKLNTVVMRGVNDDEIVDLAEFAKERGVT-LRFIELM-PLG 194 (334)
T ss_pred CcEEEEEEEeCCCCHHHHHHHHHHHHhcCCe-EEEEecc-CCC
Confidence 6 77777655589999999999999999987 3443243 443
No 86
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=99.83 E-value=1.7e-19 Score=146.32 Aligned_cols=156 Identities=22% Similarity=0.340 Sum_probs=124.5
Q ss_pred eeCcccCCCCcCcccCCC--C--CCCCChhHHHHHHHHH-HHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhh-CCC
Q psy2895 66 IMGSICTRRCKFCNISHG--R--PDPLDIEEPKKIAYTI-NKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKL-STK 139 (293)
Q Consensus 66 ~~t~~C~~~C~fC~~~~~--~--~~~~~~eei~~~~~~~-~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~-~~~ 139 (293)
.++++||++|.||..+.. . ...++++++.+.++.+ ...|.+.+.++||++. + ...+.+++..+.+. ...
T Consensus 2 ~~~~~C~~~C~fC~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~i~~~~gep~-~----~~~~~~~~~~~~~~~~~~ 76 (166)
T PF04055_consen 2 ETTRGCNLNCSFCYYPRSRRKNKPREMSPEEILEEIKELKQDKGVKEIFFGGGEPT-L----HPDFIELLELLRKIKKRG 76 (166)
T ss_dssp EEESEESS--TTTSTTTTCCTCGCEECHHHHHHHHHHHHHHHTTHEEEEEESSTGG-G----SCHHHHHHHHHHHCTCTT
T ss_pred EECcCcCccCCCCCCCccCCCcccccCCHHHHHHHHHHHhHhcCCcEEEEeecCCC-c----chhHHHHHHHHHHhhccc
Confidence 468999999999999873 2 2468999999999999 5888888888888852 2 13555666666554 245
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHcCCCeeeecccc-chH-HHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-C
Q psy2895 140 IKIEILIPDFRNQINHVLKIFKQALPDVLNHNIET-VPR-LYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-G 216 (293)
Q Consensus 140 ~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~-~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-g 216 (293)
..+.+.+++...+ ++.++.++++|++.+.+++++ +++ +++.+++++++++++++++.++++ |+.....+|+|+ |
T Consensus 77 ~~i~~~t~~~~~~-~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--g~~~~~~~i~~~~~ 153 (166)
T PF04055_consen 77 IRISINTNGTLLD-EELLDELKKLGVDRIRISLESLDEESVLRIINRGKSFERVLEALERLKEA--GIPRVIIFIVGLPG 153 (166)
T ss_dssp EEEEEEEESTTHC-HHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHHT--TSETEEEEEEEBTT
T ss_pred cceeeeccccchh-HHHHHHHHhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHHc--CCCcEEEEEEEeCC
Confidence 6777777643322 789999999999999999999 677 888888888999999999999999 998567778888 9
Q ss_pred CCHHHHHHHHHHH
Q psy2895 217 ENDEEILTVIHDM 229 (293)
Q Consensus 217 Et~ed~~~~l~~l 229 (293)
+|.+|+.++++++
T Consensus 154 ~~~~e~~~~~~~i 166 (166)
T PF04055_consen 154 ENDEEIEETIRFI 166 (166)
T ss_dssp TSHHHHHHHHHHH
T ss_pred CCHHHHHHHhCcC
Confidence 9999999999875
No 87
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=99.83 E-value=2.2e-18 Score=158.41 Aligned_cols=178 Identities=19% Similarity=0.275 Sum_probs=139.5
Q ss_pred cccCceeE-eeeeCcccCCCCcCcccCCCC-----CCCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHH
Q psy2895 56 CFGRGVAT-FMIMGSICTRRCKFCNISHGR-----PDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSC 129 (293)
Q Consensus 56 ~~~~~~~~-~~~~t~~C~~~C~fC~~~~~~-----~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~l 129 (293)
.|+..+.+ -+.+|++||.+|.||....+. ...++.+++.+.++.+.+.|++.|.|+||+| .+. ..+.++
T Consensus 52 ~~gr~~~~lrisvT~~CNlrC~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~~Gv~~I~~tGGEP-llr----~dl~el 126 (373)
T PLN02951 52 SFGRRHNYLRISLTERCNLRCQYCMPEEGVELTPKSHLLSQDEIVRLAGLFVAAGVDKIRLTGGEP-TLR----KDIEDI 126 (373)
T ss_pred CCCCcccEEEEEEcCCcCcCCCCCCCCcCCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEECCCC-cch----hhHHHH
Confidence 45555433 366799999999999875421 2358999999999999999999999999995 332 358888
Q ss_pred HHHHHhhCCCc-EEEEEcCCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCc-e
Q psy2895 130 IKHIRKLSTKI-KIEILIPDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNI-L 206 (293)
Q Consensus 130 l~~i~~~~~~~-~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi-~ 206 (293)
++.+++. +++ .+.+.|+|+.. .+.++.|+++|++++.+++++ .++.|+.++++..++++++.++.++++ |+ .
T Consensus 127 i~~l~~~-~gi~~i~itTNG~lL--~~~~~~L~~aGld~VnISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~--G~~~ 201 (373)
T PLN02951 127 CLQLSSL-KGLKTLAMTTNGITL--SRKLPRLKEAGLTSLNISLDTLVPAKFEFLTRRKGHDRVLESIDTAIEL--GYNP 201 (373)
T ss_pred HHHHHhc-CCCceEEEeeCcchH--HHHHHHHHhCCCCeEEEeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHc--CCCc
Confidence 8888875 234 47777777654 567899999999999999999 689999998777889999999999999 87 4
Q ss_pred eeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEeecCCC
Q psy2895 207 TKSGIMVGLGENDEEILTVIHDMRNHNIDILTIGQYLM 244 (293)
Q Consensus 207 ~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~~~~ 244 (293)
+...+++--|.|.+++.+.++++++.+++.-.+ .+++
T Consensus 202 vkin~vv~~g~N~~Ei~~li~~a~~~gi~vr~i-e~mP 238 (373)
T PLN02951 202 VKVNCVVMRGFNDDEICDFVELTRDKPINVRFI-EFMP 238 (373)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHHhCCCeEEEE-Eccc
Confidence 655554433889999999999999999764333 3543
No 88
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=99.82 E-value=1.5e-18 Score=155.90 Aligned_cols=176 Identities=20% Similarity=0.293 Sum_probs=141.2
Q ss_pred cccCce-eEeeeeCcccCCCCcCcccCCCC---CCCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHH
Q psy2895 56 CFGRGV-ATFMIMGSICTRRCKFCNISHGR---PDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIK 131 (293)
Q Consensus 56 ~~~~~~-~~~~~~t~~C~~~C~fC~~~~~~---~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~ 131 (293)
.||..+ ...+.+|++||.+|.||...... ...++.|++.+.++.+...|++.|.|+||+| .+ . ..+.++++
T Consensus 4 ~~gr~~~~l~i~vT~~CNl~C~yC~~~~~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tGGEP-ll-~---~~l~~iv~ 78 (302)
T TIGR02668 4 RFGRPVTSLRISVTDRCNLSCFYCHMEGEDRSGGNELSPEEIERIVRVASEFGVRKVKITGGEP-LL-R---KDLIEIIR 78 (302)
T ss_pred CCCCccCeEEEEEcccccCCCCCCCccccCCCccCcCCHHHHHHHHHHHHHcCCCEEEEECccc-cc-c---cCHHHHHH
Confidence 456554 34566799999999999876432 2469999999999988899999999999995 33 2 34678888
Q ss_pred HHHhhCCCc-EEEEEcCCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCce-ee
Q psy2895 132 HIRKLSTKI-KIEILIPDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNIL-TK 208 (293)
Q Consensus 132 ~i~~~~~~~-~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~-~~ 208 (293)
.+++. ++ .+.+.|+++.. .+.++.|+++|++++.+++++ +++.|+.++++.+++++++.++.++++ |+. +.
T Consensus 79 ~l~~~--g~~~v~i~TNG~ll--~~~~~~l~~~g~~~v~iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~--G~~~v~ 152 (302)
T TIGR02668 79 RIKDY--GIKDVSMTTNGILL--EKLAKKLKEAGLDRVNVSLDTLDPEKYKKITGRGALDRVIEGIESAVDA--GLTPVK 152 (302)
T ss_pred HHHhC--CCceEEEEcCchHH--HHHHHHHHHCCCCEEEEEecCCCHHHhhhccCCCcHHHHHHHHHHHHHc--CCCcEE
Confidence 88875 34 67777877654 678889999999999999999 689999999877999999999999999 985 76
Q ss_pred EeEEeecCCCHHHHHHHHHHHHhCCCCEEEeecCC
Q psy2895 209 SGIMVGLGENDEEILTVIHDMRNHNIDILTIGQYL 243 (293)
Q Consensus 209 ~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~~~ 243 (293)
..+++--|++.+++.+.++++++++++ +.+.+++
T Consensus 153 i~~v~~~g~n~~ei~~~~~~~~~~g~~-~~~ie~~ 186 (302)
T TIGR02668 153 LNMVVLKGINDNEIPDMVEFAAEGGAI-LQLIELM 186 (302)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHhcCCE-EEEEEEe
Confidence 665553389999999999999999987 3443344
No 89
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=99.81 E-value=3.6e-18 Score=153.55 Aligned_cols=181 Identities=13% Similarity=0.118 Sum_probs=137.2
Q ss_pred EeeeeCcccCC----CCcCcccCCCCCCCCChhHHHHHHHHHHHC-CCcE----E-EEeeecCCCCCCCChhHHHHHHHH
Q psy2895 63 TFMIMGSICTR----RCKFCNISHGRPDPLDIEEPKKIAYTINKL-KLNY----V-VITSVNRDDLHDGGSSHFVSCIKH 132 (293)
Q Consensus 63 ~~~~~t~~C~~----~C~fC~~~~~~~~~~~~eei~~~~~~~~~~-G~~~----i-~l~gg~~~~l~~~~~~~~~~ll~~ 132 (293)
+.+..|+||++ +|.||+......+..+++++.+.++.+.+. +.+. + .+++|.-.|......+.+.++++.
T Consensus 17 ~~i~~srGC~~~~~g~C~FC~~~~~~~r~~s~e~i~~~i~~~~~~~~~~~~~~~ikif~sgsf~D~~~~~~~~~~~i~~~ 96 (313)
T TIGR01210 17 TIILRTRGCYWAREGGCYMCGYLADSSPEVTEENLINQFDEAIEKYKEKIKDFVIKIFTSGSFLDDREVPKETRNYIFEK 96 (313)
T ss_pred EEEEeCCCCCCCCCCcCccCCCCCCCCCCCChhHHHHHHHHHHHHhhcccccEEEEEecCCCcCCcCcCCHHHHHHHHHH
Confidence 34556999999 599998765443456899999988887653 3321 1 245553111111235678889998
Q ss_pred HHhhCCCcEEEEEc-CCCcCcHHHHHHHHHHcCCC-eeeecccc-chHHHh-hcCCCCCHHHHHHHHHHHHHhCCCceee
Q psy2895 133 IRKLSTKIKIEILI-PDFRNQINHVLKIFKQALPD-VLNHNIET-VPRLYK-KVRPGSDYKHSLNLLKNFKKLYPNILTK 208 (293)
Q Consensus 133 i~~~~~~~~i~~~~-~~~~~~~~e~l~~l~~aG~~-~i~~~les-s~~~~~-~i~~~~~~e~~l~~i~~~~~~~pgi~~~ 208 (293)
+++.....++.+.+ |+.++ ++.|+.|+++|++ ++.+|+|| ++++++ .|+++++.+++.++++.++++ |+.+.
T Consensus 97 l~~~~~~~~i~~esrpd~i~--~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~t~~~~~~ai~~~~~~--Gi~v~ 172 (313)
T TIGR01210 97 IAQRDNLKEVVVESRPEFID--EEKLEELRKIGVNVEVAVGLETANDRIREKSINKGSTFEDFIRAAELARKY--GAGVK 172 (313)
T ss_pred HHhcCCcceEEEEeCCCcCC--HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCCCHHHHHHHHHHHHHc--CCcEE
Confidence 88743123566654 67777 8999999999998 89999999 899995 799999999999999999999 99999
Q ss_pred EeEEeec-C----CCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCc
Q psy2895 209 SGIMVGL-G----ENDEEILTVIHDMRNHNIDILTIGQYLMPSRLH 249 (293)
Q Consensus 209 ~~~ivG~-g----Et~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~ 249 (293)
+++|+|+ + |+.+++.++++.+.+++ ++++++ -+.+.+++
T Consensus 173 ~~~i~G~P~~se~ea~ed~~~ti~~~~~l~-~~vs~~-~l~v~~gT 216 (313)
T TIGR01210 173 AYLLFKPPFLSEKEAIADMISSIRKCIPVT-DTVSIN-PTNVQKGT 216 (313)
T ss_pred EEEEecCCCCChhhhHHHHHHHHHHHHhcC-CcEEEE-CCEEeCCC
Confidence 9999998 5 55677888999999999 999997 44555544
No 90
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=99.81 E-value=1.3e-17 Score=154.25 Aligned_cols=174 Identities=14% Similarity=0.159 Sum_probs=142.9
Q ss_pred CceeEeeeeCcccCCCCcCcccCCC---CCCCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHh
Q psy2895 59 RGVATFMIMGSICTRRCKFCNISHG---RPDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRK 135 (293)
Q Consensus 59 ~~~~~~~~~t~~C~~~C~fC~~~~~---~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~ 135 (293)
......+.+|+.||.+|.||..... ....++.+++.+.++++.+.|+..|.|+||++ .+. .++.++++.+++
T Consensus 14 ~P~~l~i~iT~~CNl~C~~C~~~~~~~~~~~~~~~e~~~~ii~~~~~~g~~~v~~~GGEP-ll~----~~~~~il~~~~~ 88 (378)
T PRK05301 14 PPLWLLAELTYRCPLQCPYCSNPLDLARHGAELSTEEWIRVLREARALGALQLHFSGGEP-LLR----KDLEELVAHARE 88 (378)
T ss_pred CCeEEEEEecCccCcCCCCCCCccccccccCCCCHHHHHHHHHHHHHcCCcEEEEECCcc-CCc----hhHHHHHHHHHH
Confidence 3455667789999999999987642 23579999999999999999999999999996 332 457899999987
Q ss_pred hCCCcEEEEEcCCC-cCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCC-CCHHHHHHHHHHHHHhCCCceeeEeEE
Q psy2895 136 LSTKIKIEILIPDF-RNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPG-SDYKHSLNLLKNFKKLYPNILTKSGIM 212 (293)
Q Consensus 136 ~~~~~~i~~~~~~~-~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~-~~~e~~l~~i~~~~~~~pgi~~~~~~i 212 (293)
. ++.+.+.|+|+ ++ ++.++.|+++|++.+.+++++ .+++++.+++. .++++.++.++.+++. |+.+.+.++
T Consensus 89 ~--g~~~~i~TNG~ll~--~~~~~~L~~~g~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~--g~~v~i~~v 162 (378)
T PRK05301 89 L--GLYTNLITSGVGLT--EARLAALKDAGLDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAH--GYPLTLNAV 162 (378)
T ss_pred c--CCcEEEECCCccCC--HHHHHHHHHcCCCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHC--CCceEEEEE
Confidence 6 45677778754 45 789999999999999999999 58999998864 4899999999999999 998765554
Q ss_pred eecCCCHHHHHHHHHHHHhCCCCEEEeecCCCC
Q psy2895 213 VGLGENDEEILTVIHDMRNHNIDILTIGQYLMP 245 (293)
Q Consensus 213 vG~gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p 245 (293)
+ ..++.+++.+.++++.++|++.+.+. .+.+
T Consensus 163 v-~~~N~~~i~~~~~~~~~lgv~~i~~~-~~~~ 193 (378)
T PRK05301 163 I-HRHNIDQIPRIIELAVELGADRLELA-NTQY 193 (378)
T ss_pred e-ecCCHHHHHHHHHHHHHcCCCEEEEe-cccc
Confidence 3 28899999999999999999998886 3344
No 91
>PRK00955 hypothetical protein; Provisional
Probab=99.81 E-value=2.4e-18 Score=164.39 Aligned_cols=186 Identities=14% Similarity=0.172 Sum_probs=129.0
Q ss_pred EeeeeCcccCCCCcCcccCCC--CC-CCCChhHHHHHHHHHHHC-CCcEEEE-eee-cCCCCC-----------------
Q psy2895 63 TFMIMGSICTRRCKFCNISHG--RP-DPLDIEEPKKIAYTINKL-KLNYVVI-TSV-NRDDLH----------------- 119 (293)
Q Consensus 63 ~~~~~t~~C~~~C~fC~~~~~--~~-~~~~~eei~~~~~~~~~~-G~~~i~l-~gg-~~~~l~----------------- 119 (293)
..+.++.||+..|+||+++.. +. +++++++|+++++.+.+. |++.++. .|| +...+.
T Consensus 294 ~sI~i~RGC~g~CSFCaIp~~rGr~~rSRs~esIv~Evk~L~~~~gfkg~I~DlgGptan~Yg~~c~~~~~~~~c~~~~c 373 (620)
T PRK00955 294 FSITSHRGCFGGCSFCAITFHQGRFIQSRSQESILREAKELTEMPDFKGYIHDVGGPTANFRKMACKKQLKCGACKNKQC 373 (620)
T ss_pred EEEEeeCCCCCCCCCCCeecccCCcceecCHHHHHHHHHHHHhccCCeEEEEeCCCCCcccccccccccccccccccccc
Confidence 345568999999999999874 43 578999999999999887 8887631 233 111110
Q ss_pred ---------CCChhHHHHHHHHHHhhCCCc-EEEEEcC---CCc-Cc-HHHHHHHHHHcCCC-eeeecccc-chHHHhhc
Q psy2895 120 ---------DGGSSHFVSCIKHIRKLSTKI-KIEILIP---DFR-NQ-INHVLKIFKQALPD-VLNHNIET-VPRLYKKV 182 (293)
Q Consensus 120 ---------~~~~~~~~~ll~~i~~~~~~~-~i~~~~~---~~~-~~-~~e~l~~l~~aG~~-~i~~~les-s~~~~~~i 182 (293)
..+...+.+|+++|++. +++ ++.+.+. +++ .. .++.++.|.+..+. .+++++|+ ++++++.|
T Consensus 374 lfp~~c~nl~~d~~~l~~LLr~l~~l-~gvkrv~isSGIR~D~l~~~~~~~~l~eL~~~~vsg~L~IapESgSd~VLk~M 452 (620)
T PRK00955 374 LFPKPCKNLDVDHKEYLELLRKVRKL-PGVKKVFIRSGIRYDYLLHDKNDEFFEELCEHHVSGQLKVAPEHISDRVLKLM 452 (620)
T ss_pred ccCccccccCcChHHHHHHHHHHhcc-CCceEEEeecceeccccccCCcHHHHHHHHHHhcCCCceeCcCCCChHHHHHh
Confidence 11235799999999875 333 4444332 322 11 13477777765443 68899999 89999999
Q ss_pred CCCCCHHHHHHHHHHHHHhCC--Cce--eeEeEEeec-CCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCccc
Q psy2895 183 RPGSDYKHSLNLLKNFKKLYP--NIL--TKSGIMVGL-GENDEEILTVIHDMRNHNIDILTIGQYLMPSRLHLP 251 (293)
Q Consensus 183 ~~~~~~e~~l~~i~~~~~~~p--gi~--~~~~~ivG~-gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~~a 251 (293)
+++ +.+.+.+.++.+++..+ |+. +.+++|+|+ |||++|+.++++++++++++.++++ .+.|.|++.|
T Consensus 453 ~K~-~~~~~~~f~~~~~~i~~~~G~~~~I~~yfIvGfPGETeEDf~et~eflkel~~~~~qV~-~fTP~PGT~A 524 (620)
T PRK00955 453 GKP-SREVYDKFVKKFDRINKKLGKKQYLVPYLMSSHPGSTLEDAIELAEYTKDLGYQPEQVQ-DFYPTPGTLS 524 (620)
T ss_pred CCC-CHHHHHHHHHHHHHhhhhcCCCccEEEEEEEECCCCCHHHHHHHHHHHHHcCCCcceee-eeecCCCcch
Confidence 976 44444444433333222 544 889999999 9999999999999999999998887 4467765544
No 92
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=99.80 E-value=3.8e-18 Score=142.48 Aligned_cols=174 Identities=19% Similarity=0.293 Sum_probs=141.1
Q ss_pred eeCcccCCCCcCcccCCCCC-C-CCCh--hHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcE
Q psy2895 66 IMGSICTRRCKFCNISHGRP-D-PLDI--EEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIK 141 (293)
Q Consensus 66 ~~t~~C~~~C~fC~~~~~~~-~-~~~~--eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~ 141 (293)
.++++|+++|.||..+.... . .... +++.+.+......+.+.+.++||++. . ...+.++++.+++..++..
T Consensus 2 ~~~~~C~~~C~fC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ggep~-~----~~~~~~~i~~~~~~~~~~~ 76 (204)
T cd01335 2 ELTRGCNLNCGFCSNPASKGRGPESPPEIEEILDIVLEAKERGVEVVILTGGEPL-L----YPELAELLRRLKKELPGFE 76 (204)
T ss_pred ccCCccCCcCCCCCCCCCCCCCccccccHHHHHHHHHHHHhcCceEEEEeCCcCC-c----cHhHHHHHHHHHhhCCCce
Confidence 35899999999999987432 1 1222 46777777777778899999999862 2 1278899999998766778
Q ss_pred EEEEcCCC-cCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcC-CCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-CC
Q psy2895 142 IEILIPDF-RNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVR-PGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GE 217 (293)
Q Consensus 142 i~~~~~~~-~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~-~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gE 217 (293)
+.+.|++. ++ ++.++.|+++|++.+.+++|+ ++..++.++ ++.+++++++.++.+++. |+.+.+.+++|. ++
T Consensus 77 ~~i~T~~~~~~--~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~i~g~~~~ 152 (204)
T cd01335 77 ISIETNGTLLT--EELLKELKELGLDGVGVSLDSGDEEVADKIRGSGESFKERLEALKELREA--GLGLSTTLLVGLGDE 152 (204)
T ss_pred EEEEcCcccCC--HHHHHHHHhCCCceEEEEcccCCHHHHHHHhcCCcCHHHHHHHHHHHHHc--CCCceEEEEEecCCC
Confidence 88887633 34 889999999999999999999 688888887 677999999999999999 999999999999 77
Q ss_pred CHHHHHHHHHHHHhCC-CCEEEeecCCCCCCCc
Q psy2895 218 NDEEILTVIHDMRNHN-IDILTIGQYLMPSRLH 249 (293)
Q Consensus 218 t~ed~~~~l~~l~~l~-~~~i~i~~~~~p~~~~ 249 (293)
+.+++.++++.+.+.+ ++.+.++ .+.|.+++
T Consensus 153 ~~~~~~~~~~~l~~~~~~~~~~~~-~~~p~~~t 184 (204)
T cd01335 153 DEEDDLEELELLAEFRSPDRVSLF-RLLPEEGT 184 (204)
T ss_pred hhHHHHHHHHHHHhhcCcchhhhh-hhcccCCC
Confidence 7799999999999988 8888887 44566554
No 93
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=99.79 E-value=6.8e-18 Score=149.33 Aligned_cols=171 Identities=18% Similarity=0.272 Sum_probs=140.3
Q ss_pred cccCceeEe-eeeCcccCCCCcCcccCC-C--CC--CCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHH
Q psy2895 56 CFGRGVATF-MIMGSICTRRCKFCNISH-G--RP--DPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSC 129 (293)
Q Consensus 56 ~~~~~~~~~-~~~t~~C~~~C~fC~~~~-~--~~--~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~l 129 (293)
.|+..+... +.+|..||++|.||-..- . .+ ..+|+|||...++...+.|++.|-||||+| .+ . .++.++
T Consensus 5 ~~gR~~~~LRiSvTdrCNfrC~YCm~eg~~~~~~~~~~Ls~eei~~~~~~~~~~Gv~kvRlTGGEP-ll-R---~dl~eI 79 (322)
T COG2896 5 RFGRPVRYLRISVTDRCNFRCTYCMPEGPLAFLPKEELLSLEEIRRLVRAFAELGVEKVRLTGGEP-LL-R---KDLDEI 79 (322)
T ss_pred ccCCEeceEEEEEecCcCCcccccCCCCCcccCcccccCCHHHHHHHHHHHHHcCcceEEEeCCCc-hh-h---cCHHHH
Confidence 455554443 446899999999998754 1 12 368999999999999999999999999995 34 2 468888
Q ss_pred HHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCce-e
Q psy2895 130 IKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNIL-T 207 (293)
Q Consensus 130 l~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~-~ 207 (293)
++.+++. .-..+.+.|+|+.- ...++.|++||+++++++++| .++.|++|.+...++++++.++.|.++ |+. +
T Consensus 80 i~~l~~~-~~~~islTTNG~~L--~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~--Gl~pV 154 (322)
T COG2896 80 IARLARL-GIRDLSLTTNGVLL--ARRAADLKEAGLDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEA--GLTPV 154 (322)
T ss_pred HHHHhhc-ccceEEEecchhhH--HHHHHHHHHcCCcEEEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHc--CCCce
Confidence 8888875 23368888887665 788999999999999999999 799999998766799999999999999 994 8
Q ss_pred eEeEEeecCCCHHHHHHHHHHHHhCCCCE
Q psy2895 208 KSGIMVGLGENDEEILTVIHDMRNHNIDI 236 (293)
Q Consensus 208 ~~~~ivG~gEt~ed~~~~l~~l~~l~~~~ 236 (293)
..++++==|-+..++.+.++++++.|+..
T Consensus 155 KlN~Vv~kgvNd~ei~~l~e~~~~~~~~l 183 (322)
T COG2896 155 KLNTVLMKGVNDDEIEDLLEFAKERGAQL 183 (322)
T ss_pred EEEEEEecCCCHHHHHHHHHHHhhcCCce
Confidence 87776633789999999999999999853
No 94
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=99.78 E-value=2.3e-17 Score=151.68 Aligned_cols=168 Identities=13% Similarity=0.192 Sum_probs=138.7
Q ss_pred eeEeeeeCcccCCCCcCcccCCC---CCCCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhC
Q psy2895 61 VATFMIMGSICTRRCKFCNISHG---RPDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLS 137 (293)
Q Consensus 61 ~~~~~~~t~~C~~~C~fC~~~~~---~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~ 137 (293)
....+.+|+.||.+|.||..+.. ....++.+++.+.++++.+.|+..|.|+||+| .+. +.+.++++.+++.
T Consensus 7 ~~l~ieiT~~CNl~C~~C~~~~~~~~~~~~l~~e~~~~ii~~~~~~g~~~v~~~GGEP-ll~----~~~~~ii~~~~~~- 80 (358)
T TIGR02109 7 LWLLAELTHRCPLQCPYCSNPLELARRKAELTTEEWTDVLTQAAELGVLQLHFSGGEP-LAR----PDLVELVAHARRL- 80 (358)
T ss_pred cEEEEeeccccCcCCCCCCCChhcccccCCCCHHHHHHHHHHHHhcCCcEEEEeCccc-ccc----ccHHHHHHHHHHc-
Confidence 45567789999999999987642 23569999999999999999999999999996 332 3578999999876
Q ss_pred CCcEEEEEcCCC-cCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCC-CCHHHHHHHHHHHHHhCCCceeeEeEEee
Q psy2895 138 TKIKIEILIPDF-RNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPG-SDYKHSLNLLKNFKKLYPNILTKSGIMVG 214 (293)
Q Consensus 138 ~~~~i~~~~~~~-~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~-~~~e~~l~~i~~~~~~~pgi~~~~~~ivG 214 (293)
++.+.+.|+|+ ++ ++.++.|+++|++.+.+++++ .+++++++++. .+++..++.++.+++. |+.+...+++
T Consensus 81 -g~~~~l~TNG~ll~--~e~~~~L~~~g~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~--g~~v~v~~vv- 154 (358)
T TIGR02109 81 -GLYTNLITSGVGLT--EARLDALADAGLDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKAA--GLPLTLNFVI- 154 (358)
T ss_pred -CCeEEEEeCCccCC--HHHHHHHHhCCCCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhC--CCceEEEEEe-
Confidence 45677778764 44 889999999999999999999 58899998753 4899999999999999 9876554443
Q ss_pred cCCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 215 LGENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 215 ~gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
..++.+++.+++++++++|++.+.+.
T Consensus 155 ~~~N~~~l~~~~~~~~~lg~~~i~~~ 180 (358)
T TIGR02109 155 HRHNIDQIPEIIELAIELGADRVELA 180 (358)
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 28899999999999999999988775
No 95
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=99.75 E-value=3.9e-16 Score=140.90 Aligned_cols=167 Identities=11% Similarity=0.077 Sum_probs=132.2
Q ss_pred eEeeeeCcccCCCCcCcccCCCC----CCCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhC
Q psy2895 62 ATFMIMGSICTRRCKFCNISHGR----PDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLS 137 (293)
Q Consensus 62 ~~~~~~t~~C~~~C~fC~~~~~~----~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~ 137 (293)
...+++|..||.+|.||...... ...++.|++.+.++ +.|+..|.|+||+| .+ . +++.++++.+++.
T Consensus 29 ~l~le~T~~CNL~C~~C~~~~~~~~~~~~~ls~ee~~~~i~---e~g~~~V~i~GGEP-LL-~---pdl~eiv~~~~~~- 99 (318)
T TIGR03470 29 VLMLEPLFRCNLACAGCGKIQYPAEILKQRLSVEECLRAVD---ECGAPVVSIPGGEP-LL-H---PEIDEIVRGLVAR- 99 (318)
T ss_pred EEEEecccccCcCCcCCCCCcCCCcccccCCCHHHHHHHHH---HcCCCEEEEeCccc-cc-c---ccHHHHHHHHHHc-
Confidence 44567899999999999975432 23588998887655 46899999999996 23 2 3578899988876
Q ss_pred CCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeeeccccchHHHhhcC-CCCCHHHHHHHHHHHHHhCCCceeeEeEEeecC
Q psy2895 138 TKIKIEILIPDFRNQINHVLKIFKQALPDVLNHNIETVPRLYKKVR-PGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLG 216 (293)
Q Consensus 138 ~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~less~~~~~~i~-~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~g 216 (293)
+..+.+.|++++- .+.+..++++|...+.+++++.++.++.++ ++.+++..++.++.++++ |+.+++.+.+--+
T Consensus 100 -g~~v~l~TNG~ll--~~~~~~l~~~~~~~i~VSLDG~~e~hd~~~~~~g~f~~~l~~I~~l~~~--G~~v~v~~tv~~~ 174 (318)
T TIGR03470 100 -KKFVYLCTNALLL--EKKLDKFEPSPYLTFSVHLDGLREHHDASVCREGVFDRAVEAIREAKAR--GFRVTTNTTLFND 174 (318)
T ss_pred -CCeEEEecCceeh--HHHHHHHHhCCCcEEEEEEecCchhhchhhcCCCcHHHHHHHHHHHHHC--CCcEEEEEEEeCC
Confidence 3567788887654 456888989999999999999777887765 456999999999999999 9987665544237
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEeecC
Q psy2895 217 ENDEEILTVIHDMRNHNIDILTIGQY 242 (293)
Q Consensus 217 Et~ed~~~~l~~l~~l~~~~i~i~~~ 242 (293)
++.+++.+.++++.++|++.+.+.+.
T Consensus 175 ~n~~ei~~~~~~~~~lGv~~i~i~p~ 200 (318)
T TIGR03470 175 TDPEEVAEFFDYLTDLGVDGMTISPG 200 (318)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 99999999999999999999888644
No 96
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=99.74 E-value=4.2e-16 Score=147.83 Aligned_cols=166 Identities=15% Similarity=0.224 Sum_probs=135.2
Q ss_pred cccCC-CCcCccc-------CC---CC-C--------CCCChhHHHHHHHHHHHCCC--c--EEEEeeecCCCCCCCChh
Q psy2895 69 SICTR-RCKFCNI-------SH---GR-P--------DPLDIEEPKKIAYTINKLKL--N--YVVITSVNRDDLHDGGSS 124 (293)
Q Consensus 69 ~~C~~-~C~fC~~-------~~---~~-~--------~~~~~eei~~~~~~~~~~G~--~--~i~l~gg~~~~l~~~~~~ 124 (293)
.-||+ +|.||-- +. +. | +.-+.+++...++++...|. + +++|.||+...++ .+
T Consensus 76 ~~cph~~c~~cp~~~~~~~~~~sy~~~ep~~~ra~~~~~dpy~q~~~rl~~l~~~g~~~~kvE~i~~GGTft~l~---~~ 152 (522)
T TIGR01211 76 HRCPHGKCLYCPGGPDSENSPQSYTGYEPAAMRGRQNDYDPYEQVTARLEQLEQIGHPVDKVELIIMGGTFPARD---LD 152 (522)
T ss_pred ccCCCCceEeCCCCCCcCCCCcccCCCCcHhHHHHHcCCCcHHHHHHHHHHHHHhCCCCceEEEEEECCCcccCC---HH
Confidence 77995 8999974 11 11 1 13457888988999988763 3 4588899875554 56
Q ss_pred HHHHHHHHHHhhCCC-------------------------cEEEEEc-CCCcCcHHHHHHHHHHcCCCeeeecccc-chH
Q psy2895 125 HFVSCIKHIRKLSTK-------------------------IKIEILI-PDFRNQINHVLKIFKQALPDVLNHNIET-VPR 177 (293)
Q Consensus 125 ~~~~ll~~i~~~~~~-------------------------~~i~~~~-~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~ 177 (293)
+...+++.+.+..++ +.+++.+ |+..+ ++.++.|+++|++++.+|+|| +++
T Consensus 153 y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiEtRPD~i~--~e~L~~L~~~G~~rVslGVQS~~d~ 230 (522)
T TIGR01211 153 YQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIETRPDYCR--EEHIDRMLKLGATRVELGVQTIYND 230 (522)
T ss_pred HHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEEEcCCcCC--HHHHHHHHHcCCCEEEEECccCCHH
Confidence 666666666654322 4566645 68777 899999999999999999999 799
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHHHHHh---CCCCEEEeec
Q psy2895 178 LYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHDMRN---HNIDILTIGQ 241 (293)
Q Consensus 178 ~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~~l~~---l~~~~i~i~~ 241 (293)
+++.++|+|+.+++.++++.++++ |+.+++++|+|+ |+|.+++.++++.+.+ ++++.+.+++
T Consensus 231 VL~~inRght~~~v~~Ai~~lr~~--G~~v~~~LM~GLPgqt~e~~~~t~~~l~~~~~l~pD~Ikiyp 296 (522)
T TIGR01211 231 ILERTKRGHTVRDVVEATRLLRDA--GLKVVYHIMPGLPGSSFERDLEMFREIFEDPRFKPDMLKIYP 296 (522)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHc--CCeEEEEeecCCCCCCHHHHHHHHHHHHhccCCCcCEEEEec
Confidence 999999999999999999999999 999999999999 9999999999999874 9999999975
No 97
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=99.72 E-value=1.6e-15 Score=132.38 Aligned_cols=206 Identities=14% Similarity=0.172 Sum_probs=143.4
Q ss_pred CceeEeeeeCcccCCCCcCcccCCC----CCCCCChhHHHHHHHHHHHC---CCcEEEEeeecCCCCCCCChhHHHHHHH
Q psy2895 59 RGVATFMIMGSICTRRCKFCNISHG----RPDPLDIEEPKKIAYTINKL---KLNYVVITSVNRDDLHDGGSSHFVSCIK 131 (293)
Q Consensus 59 ~~~~~~~~~t~~C~~~C~fC~~~~~----~~~~~~~eei~~~~~~~~~~---G~~~i~l~gg~~~~l~~~~~~~~~~ll~ 131 (293)
+++.+. +.+.|||.+|.||..+.. ..+.++++++.+.+...... ....|+++||+| .+ ..+.+.++++
T Consensus 19 ~g~~~~-~f~~gCnl~C~~C~~~~~~~~~~~~~lt~eei~~~i~~~~~~~~~~~~~V~~sGGEP-ll---~~~~~~~l~~ 93 (246)
T PRK11145 19 PGIRFI-TFFQGCLMRCLYCHNRDTWDTHGGKEVTVEELMKEVVTYRHFMNASGGGVTASGGEA-IL---QAEFVRDWFR 93 (246)
T ss_pred CCeEEE-EEECCCCCcCCCCCCHHHCCCCCCeEcCHHHHHHHHHHhHHHHhcCCCeEEEeCccH-hc---CHHHHHHHHH
Confidence 344443 457899999999997642 13468999999888766432 345789999995 23 2455679999
Q ss_pred HHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCce--ee
Q psy2895 132 HIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNIL--TK 208 (293)
Q Consensus 132 ~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~--~~ 208 (293)
.+++. ++.+.+.|+|+.....+.++.+.+ .+|.+.+++++ +++.++++++. +.+..++.++.+++. |+. +.
T Consensus 94 ~~k~~--g~~i~l~TNG~~~~~~~~~~~ll~-~~d~v~islk~~~~e~~~~~~g~-~~~~~l~~i~~l~~~--g~~v~i~ 167 (246)
T PRK11145 94 ACKKE--GIHTCLDTNGFVRRYDPVIDELLD-VTDLVMLDLKQMNDEIHQNLVGV-SNHRTLEFARYLAKR--NQKTWIR 167 (246)
T ss_pred HHHHc--CCCEEEECCCCCCcchHHHHHHHH-hCCEEEECCCcCChhhcccccCC-ChHHHHHHHHHHHhC--CCcEEEE
Confidence 99885 456777777765311467777765 58889999999 68899988753 557888999999988 775 44
Q ss_pred EeEEeecCCCHHHHHHHHHHHHhCC-CCEEEeecCCCCCC-C------c--cccccccChhHHHHHHHHHHHhcccc
Q psy2895 209 SGIMVGLGENDEEILTVIHDMRNHN-IDILTIGQYLMPSR-L------H--LPVHRYLHPKFFEKFKKIAYKLGFKN 275 (293)
Q Consensus 209 ~~~ivG~gEt~ed~~~~l~~l~~l~-~~~i~i~~~~~p~~-~------~--~a~~r~~~p~~~~~~~~~~~~~G~~~ 275 (293)
+.++-|+.++++|+.++++++++++ +..+.+.+|-++.. + . +.-.+-..++++.++.+.+++.|+..
T Consensus 168 ~~li~g~nd~~~ei~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~g~~~ 244 (246)
T PRK11145 168 YVVVPGWTDDDDSAHRLGEFIKDMGNIEKIELLPYHELGKHKWEAMGEEYKLDGVKPPSKETMERVKGILEQYGHKV 244 (246)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhcCCcceEEEecCCccchhHHHHcCCcccccCCCCCCHHHHHHHHHHHHHcCCcc
Confidence 5566677888899999999999986 45665554432110 0 0 11112245666788888888878765
No 98
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=99.71 E-value=2.7e-15 Score=129.95 Aligned_cols=168 Identities=16% Similarity=0.212 Sum_probs=125.3
Q ss_pred eeeCcccCCCCcCcccCCCC----CCCCChhHHHHHHHHHHHCC---CcEEEEeeecCCCCCCCChhHHHHHHHHHHhhC
Q psy2895 65 MIMGSICTRRCKFCNISHGR----PDPLDIEEPKKIAYTINKLK---LNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLS 137 (293)
Q Consensus 65 ~~~t~~C~~~C~fC~~~~~~----~~~~~~eei~~~~~~~~~~G---~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~ 137 (293)
++++++||++|.||..+... .+.++++++.+.+..+...+ ...|.|+||+| .+ ..+.+.++++.+++.
T Consensus 19 ~v~~~gCnl~C~~C~~~~~~~~~~~~~~s~e~i~~~i~~~~~~~~~~~~~I~~~GGEP-ll---~~~~~~~li~~~~~~- 93 (235)
T TIGR02493 19 VVFMQGCPLRCQYCHNPDTWDLKGGTEVTPEELIKEVGSYKDFFKASGGGVTFSGGEP-LL---QPEFLSELFKACKEL- 93 (235)
T ss_pred EEEECCCCCcCCCCCChhhccCCCCEECCHHHHHHHHHHhHHHHhcCCCeEEEeCccc-cc---CHHHHHHHHHHHHHC-
Confidence 35689999999999876432 24689999999888876542 25799999985 23 245567999999885
Q ss_pred CCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEe--e
Q psy2895 138 TKIKIEILIPDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMV--G 214 (293)
Q Consensus 138 ~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~iv--G 214 (293)
++.+.+.|+++...+.+.++.+.+ .++.+.+++++ +++.++++++. ++++.++.++.+++. |+.+...+++ |
T Consensus 94 -g~~~~i~TNG~~~~~~~~~~~ll~-~~d~v~isl~~~~~~~~~~~~g~-~~~~v~~~i~~l~~~--g~~~~v~~vv~~~ 168 (235)
T TIGR02493 94 -GIHTCLDTSGFLGGCTEAADELLE-YTDLVLLDIKHFNPEKYKKLTGV-SLQPTLDFAKYLAKR--NKPIWIRYVLVPG 168 (235)
T ss_pred -CCCEEEEcCCCCCccHHHHHHHHH-hCCEEEEeCCCCCHHHHHHHHCC-CcHHHHHHHHHHHhC--CCcEEEEEeeeCC
Confidence 456777777643211345566554 47889999999 68999988754 889999999999998 8876555444 4
Q ss_pred cCCCHHHHHHHHHHHHhCC-CCEEEeecC
Q psy2895 215 LGENDEEILTVIHDMRNHN-IDILTIGQY 242 (293)
Q Consensus 215 ~gEt~ed~~~~l~~l~~l~-~~~i~i~~~ 242 (293)
..++.+++.++++++++++ +..+.+.+|
T Consensus 169 ~~~n~~ei~~l~~~~~~l~~~~~~~~~p~ 197 (235)
T TIGR02493 169 YTDSEEDIEALAEFVKTLPNVERVEVLPY 197 (235)
T ss_pred cCCCHHHHHHHHHHHHhCCCCceEEecCC
Confidence 4678999999999999999 567777644
No 99
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=99.71 E-value=4.5e-15 Score=139.10 Aligned_cols=172 Identities=15% Similarity=0.214 Sum_probs=131.4
Q ss_pred eeeeCcccCCCCcCcccCCC-----C----CCCCChhHHHHHHHHHHHC--CCcEEEEee-ecCCCCCCCChhHHHHHHH
Q psy2895 64 FMIMGSICTRRCKFCNISHG-----R----PDPLDIEEPKKIAYTINKL--KLNYVVITS-VNRDDLHDGGSSHFVSCIK 131 (293)
Q Consensus 64 ~~~~t~~C~~~C~fC~~~~~-----~----~~~~~~eei~~~~~~~~~~--G~~~i~l~g-g~~~~l~~~~~~~~~~ll~ 131 (293)
.+.++++||.+|.||..... + .+.++++|+++.++.+.+. +.+.|.|+| |+| .+ . .+...++++
T Consensus 27 ~~~vt~~CNl~C~yC~~~~~~~~esrpg~~~~~Ltpee~~~~i~~v~~~~~~~~~V~iaG~GEP-Ll-~--~e~~~~~l~ 102 (442)
T TIGR01290 27 HLAVAPACNIQCNYCNRKYDCANESRPGVVSELLTPEQALRKARQVAAEIPQLSVVGIAGPGDP-LA-N--IGKTFQTLE 102 (442)
T ss_pred EEecCCCCCCcCcCCCCCCCCCcCCCCccccccCCHHHHHHHHHHHHHhcCCCCEEEEecCCCc-cc-C--ccccHHHHH
Confidence 45679999999999996432 2 2458999999999988764 567899999 875 22 1 345678888
Q ss_pred HHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcC----------CCC-----CHHHHHHHH
Q psy2895 132 HIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVR----------PGS-----DYKHSLNLL 195 (293)
Q Consensus 132 ~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~----------~~~-----~~e~~l~~i 195 (293)
.+++..|++.+.+.|+|+.. .+.+++|.+.|+|.+.+++++ ++++++++. ++. .++..++.+
T Consensus 103 ~~~~~~~~i~i~lsTNG~~l--~e~i~~L~~~gvd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l 180 (442)
T TIGR01290 103 LVARQLPDVKLCLSTNGLML--PEHVDRLVDLGVGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGL 180 (442)
T ss_pred HHHHhcCCCeEEEECCCCCC--HHHHHHHHHCCCCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHH
Confidence 88887777888888888765 788999999999999999999 688888762 111 156678999
Q ss_pred HHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEeecCC
Q psy2895 196 KNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIGQYL 243 (293)
Q Consensus 196 ~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~~~ 243 (293)
+.+.+. |+.+...+++--|.|++++.+..++++++++..+.+.++.
T Consensus 181 ~~l~~~--G~~v~v~~vlIpGiND~~i~~l~~~~~~lg~~~~nl~p~~ 226 (442)
T TIGR01290 181 EKLTER--GILVKVNSVLIPGINDEHLVEVSKQVKELGAFLHNVMPLI 226 (442)
T ss_pred HHHHhC--CCeEEEEEEeeCCcCHHHHHHHHHHHHhCCCcEEEeecCC
Confidence 999998 8865444333225566999999999999999877776453
No 100
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=99.69 E-value=4.3e-16 Score=148.33 Aligned_cols=182 Identities=19% Similarity=0.197 Sum_probs=130.6
Q ss_pred eEeeeeCcccCCCCcCcccCCCC-CCCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCC---CChhHHHHHHHHHHhhC
Q psy2895 62 ATFMIMGSICTRRCKFCNISHGR-PDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHD---GGSSHFVSCIKHIRKLS 137 (293)
Q Consensus 62 ~~~~~~t~~C~~~C~fC~~~~~~-~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~---~~~~~~~~ll~~i~~~~ 137 (293)
...+++++||+++|.||+.+... .+.++++.+.++++.+.+.|.+.+.+..++.-.+.. .....+..+...+.+..
T Consensus 199 ~~~ve~~RGCp~~C~FC~~~~~~~~r~~~~~~v~~ei~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~~~~~~ 278 (490)
T COG1032 199 AFSVETSRGCPRGCRFCSITKHFKYRRRRPERVVEEIKELIEEGGKRVVFFVDDIFLYGSPALNDEKRFELLSLELIERG 278 (490)
T ss_pred EEEEEeccCCCCCCCCCCCcccccccCCCHHHHHHHHHHHHHHhhhcCcccccceeecCCccccchhhcccchHHHHHHh
Confidence 45677899999999999998753 567888888888888877766554322222111100 00123333333343332
Q ss_pred C--CcEEEEEcC----CCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHH-HHHHHHHhCCCceeeE
Q psy2895 138 T--KIKIEILIP----DFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLN-LLKNFKKLYPNILTKS 209 (293)
Q Consensus 138 ~--~~~i~~~~~----~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~-~i~~~~~~~pgi~~~~ 209 (293)
. ...+++..| ++.+. ++.+..++++|..++.+|+|| ++++++.++++++.++.++ +++.+.++ |+.+..
T Consensus 279 ~~~~~~~~~~~~~~r~d~~~~-~~~~~~~~~~g~~~~~iG~Esgs~~~l~~~~k~~~~~~~~~~a~~~~~~~--~~~~~~ 355 (490)
T COG1032 279 LRKGCRVHISAPSLRADTVTD-EELLKLLREAGLRRVYIGIESGSEELLKKINKGITTEEVLEEAVKIAKEH--GLRVKL 355 (490)
T ss_pred cccCceeeeeccccCchhcCH-HHHHHHHhhCCCcceEEeccCCCHHHHHHHhCCCChHHHHHHHHHHHHhC--CceeeE
Confidence 1 112333322 44432 678888999999999999999 8999999999999999995 99999999 999999
Q ss_pred eEEeec-CCCHHHHHHH---HHHHHhCCCC-EEEeecCCCCCC
Q psy2895 210 GIMVGL-GENDEEILTV---IHDMRNHNID-ILTIGQYLMPSR 247 (293)
Q Consensus 210 ~~ivG~-gEt~ed~~~~---l~~l~~l~~~-~i~i~~~~~p~~ 247 (293)
++|+|+ |||.+|+.++ ++++++++.. .+.++ ++.|.+
T Consensus 356 ~~i~G~pget~ed~~~t~~~~~~~~~~~~~~~~~~~-~~~p~p 397 (490)
T COG1032 356 YFIVGLPGETEEDVKETIELAKFIKKLGPKLYVSPS-PFVPLP 397 (490)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHHHhCccceEEEe-eeeCCC
Confidence 999999 9999999999 7888899986 67776 556654
No 101
>KOG4355|consensus
Probab=99.69 E-value=2e-16 Score=139.79 Aligned_cols=186 Identities=12% Similarity=0.176 Sum_probs=138.8
Q ss_pred eeeCcccCCCCcCcccCC--CCCCCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCC-cE
Q psy2895 65 MIMGSICTRRCKFCNISH--GRPDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTK-IK 141 (293)
Q Consensus 65 ~~~t~~C~~~C~fC~~~~--~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~-~~ 141 (293)
+.++.||-..|+||-... +.-.+.+.+++++.++...+.|+.+|.+++-+...+-..--..+..++..+.+..|. ..
T Consensus 191 i~intgclgaCtyckTkharg~l~sy~~dslvervrt~f~egv~eIwltsedTgaygrdig~slp~ll~klv~~iPe~cm 270 (547)
T KOG4355|consen 191 ISINTGCLGACTYCKTKHARGLLASYPKDSLVERVRTSFEEGVCEIWLTSEDTGAYGRDIGKSLPKLLWKLVEVIPESCM 270 (547)
T ss_pred EEeccccccccccccccccccccccCCHHHHHHHHHHHHhcCcEEEEecccccchhhhhhhhhhHHHHHHHHHhcchhhh
Confidence 345789999999998754 444678999999999999999999999988765433111013566677777766553 23
Q ss_pred EEE-Ec-C-CCcCcHHHHHHHHHHcCCC-eeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-
Q psy2895 142 IEI-LI-P-DFRNQINHVLKIFKQALPD-VLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL- 215 (293)
Q Consensus 142 i~~-~~-~-~~~~~~~e~l~~l~~aG~~-~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~- 215 (293)
+++ +| | -+...++|....|+--.+- .+++++|| |+.++-.|+|.+...++..++..+.+..||+.+.++||.||
T Consensus 271 lr~gmTnpP~ilehl~e~a~vlrhp~vYsflhvpvqsgsdsvl~emkreyc~~dfk~Vvd~LterVPgi~IATDiIcgFP 350 (547)
T KOG4355|consen 271 LRAGMTNPPYILEHLEEAAFVLRHPRVYSFLHVPVQSGSDSVLTEMKREYCNFDFKIVVDFLTERVPGITIATDIICGFP 350 (547)
T ss_pred hhhcCCCCchHHHHHHHHHHHhcCCeEEEEEecccccCchhHHHHHHHHHhhhhHHHHHHHHHhhCCCcEEeeeeeecCC
Confidence 444 23 3 2222223333333211111 14678999 89999999999988888899999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCccc
Q psy2895 216 GENDEEILTVIHDMRNHNIDILTIGQYLMPSRLHLP 251 (293)
Q Consensus 216 gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~~a 251 (293)
|||+|||+++++++++..+.++.|++|+ |.+++.|
T Consensus 351 tETdeDFeeTmeLv~kYKFPslfInQfy-PRpGTPA 385 (547)
T KOG4355|consen 351 TETDEDFEETMELVRKYKFPSLFINQFY-PRPGTPA 385 (547)
T ss_pred CCchHHHHHHHHHHHHccCchhhhhhcC-CCCCChH
Confidence 9999999999999999999999999876 6666555
No 102
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.67 E-value=6.2e-15 Score=125.75 Aligned_cols=181 Identities=18% Similarity=0.313 Sum_probs=129.8
Q ss_pred ccccccCceeEe-eeeCcccCC--------CCcCcccCCCC----CCCCC-hhHHHHHHHHHHH-C-CCcEE-EEeeecC
Q psy2895 53 IGECFGRGVATF-MIMGSICTR--------RCKFCNISHGR----PDPLD-IEEPKKIAYTINK-L-KLNYV-VITSVNR 115 (293)
Q Consensus 53 ~~~~~~~~~~~~-~~~t~~C~~--------~C~fC~~~~~~----~~~~~-~eei~~~~~~~~~-~-G~~~i-~l~gg~~ 115 (293)
+++.|+.++.=. +-.+-.||+ .|.||+....- .+..+ .+++.+.++...+ . +.+++ +|+...+
T Consensus 15 lr~~fg~Kv~Kv~ld~GF~CPNRDGti~rGGCtFC~~~g~~d~~~~~~~~i~~Q~~~q~~~~~kK~~~~kyiaYFQ~~TN 94 (312)
T COG1242 15 LREKFGEKVFKVTLDGGFSCPNRDGTIGRGGCTFCSVAGSGDFAGQPKISIAEQFKEQAERMHKKWKRGKYIAYFQAYTN 94 (312)
T ss_pred HHHHhCCeeEEEeccCCCCCCCCCCcccCCceeeecCCCCCccccCcccCHHHHHHHHHHHHHHhhcCCcEEEEEecccc
Confidence 445566553322 223567885 59999875421 12334 4556666665543 2 33443 6666654
Q ss_pred CCCCCCChhHHHHHHHHHHhhCCCcEEEEEc-CCCcCcHHHHHHHHHHcCC---Ceeeecccc-chHHHhhcCCCCCHHH
Q psy2895 116 DDLHDGGSSHFVSCIKHIRKLSTKIKIEILI-PDFRNQINHVLKIFKQALP---DVLNHNIET-VPRLYKKVRPGSDYKH 190 (293)
Q Consensus 116 ~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~-~~~~~~~~e~l~~l~~aG~---~~i~~~les-s~~~~~~i~~~~~~e~ 190 (293)
++ .+.+.+.++.+..-+...-+++.+.| ||.+. +++++.|.+..- -++.+|+|| .+++++.++|+|+++.
T Consensus 95 -Ty--ApvevLre~ye~aL~~~~VVGLsIgTRPDClp--d~VldlL~e~~~r~~vWvELGLQT~h~~Tlk~iNRgHd~~~ 169 (312)
T COG1242 95 -TY--APVEVLREMYEQALSEAGVVGLSIGTRPDCLP--DDVLDLLAEYNKRYEVWVELGLQTAHDKTLKRINRGHDFAC 169 (312)
T ss_pred -cc--CcHHHHHHHHHHHhCcCCeeEEeecCCCCCCc--HHHHHHHHHHhhheEEEEEeccchhhHHHHHHHhcccchHH
Confidence 23 23667777777665543335788866 78887 677777766422 135679999 6999999999999999
Q ss_pred HHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 191 SLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 191 ~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
+.++++.+++. ||.+++++|+|+ |||.+++.++++.+.+++++-|-++
T Consensus 170 y~dav~r~rkr--gIkvc~HiI~GLPgE~~~~mleTak~v~~~~v~GIKlH 218 (312)
T COG1242 170 YVDAVKRLRKR--GIKVCTHLINGLPGETRDEMLETAKIVAELGVDGIKLH 218 (312)
T ss_pred HHHHHHHHHHc--CCeEEEEEeeCCCCCCHHHHHHHHHHHHhcCCceEEEE
Confidence 99999999999 999999999999 9999999999999999999988776
No 103
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=99.66 E-value=2.3e-14 Score=120.16 Aligned_cols=161 Identities=16% Similarity=0.270 Sum_probs=118.8
Q ss_pred CceeEeeeeCcccCCCCcCcccCCC--C--CCCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHH
Q psy2895 59 RGVATFMIMGSICTRRCKFCNISHG--R--PDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIR 134 (293)
Q Consensus 59 ~~~~~~~~~t~~C~~~C~fC~~~~~--~--~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~ 134 (293)
++..+++..|++||.+|.||..+.. . ...++++++.+.++.... .++.|.++||+| .+ . .++.++++.++
T Consensus 14 ~g~~~~~~~t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~~~-~~~~i~~sGGEP-ll-~---~~l~~li~~~~ 87 (191)
T TIGR02495 14 PGKLAFTIFFQGCNLKCPYCHNPELIDREGSGEIEVEFLLEFLRSRQG-LIDGVVITGGEP-TL-Q---AGLPDFLRKVR 87 (191)
T ss_pred CCCeEEEEEcCCCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHhcC-CCCeEEEECCcc-cC-c---HhHHHHHHHHH
Confidence 3444555569999999999998742 1 236889999988876522 368899999995 23 2 24889999998
Q ss_pred hhCCCcEEEEEcCCCcCcHHHHHHHHHHcC-CCeeeeccccchHHHhhcC-CCCCHH-HHHHHHHHHHHhCCCceeeEe-
Q psy2895 135 KLSTKIKIEILIPDFRNQINHVLKIFKQAL-PDVLNHNIETVPRLYKKVR-PGSDYK-HSLNLLKNFKKLYPNILTKSG- 210 (293)
Q Consensus 135 ~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG-~~~i~~~less~~~~~~i~-~~~~~e-~~l~~i~~~~~~~pgi~~~~~- 210 (293)
+. ++.+.+.|++.. .+.++.+.++| ++.+.++++++++.+..+. ++..++ +++++++.+++. |+.+...
T Consensus 88 ~~--g~~v~i~TNg~~---~~~l~~l~~~g~~~~v~isl~~~~~~~~~~~g~~~~~~~~~~~~i~~l~~~--gi~~~i~~ 160 (191)
T TIGR02495 88 EL--GFEVKLDTNGSN---PRVLEELLEEGLVDYVAMDVKAPPEKYPELYGLEKNGSNNILKSLEILLRS--GIPFELRT 160 (191)
T ss_pred HC--CCeEEEEeCCCC---HHHHHHHHhcCCCcEEEEeccCChHHHHHHHCCCCchHHHHHHHHHHHHHc--CCCEEEEE
Confidence 85 466777777653 67788888888 6899999988666666654 444565 899999999999 8865444
Q ss_pred -EEeecCCCHHHHHHHHHHHHhCC
Q psy2895 211 -IMVGLGENDEEILTVIHDMRNHN 233 (293)
Q Consensus 211 -~ivG~gEt~ed~~~~l~~l~~l~ 233 (293)
++-|... .+++.+.++++++.+
T Consensus 161 ~v~~~~~~-~~ei~~~~~~l~~~~ 183 (191)
T TIGR02495 161 TVHRGFLD-EEDLAEIATRIKENG 183 (191)
T ss_pred EEeCCCCC-HHHHHHHHHHhccCC
Confidence 4445533 679999999999887
No 104
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=99.64 E-value=5.8e-14 Score=126.85 Aligned_cols=186 Identities=11% Similarity=0.120 Sum_probs=134.2
Q ss_pred eeeeCcccCCCCcCcccCC--CC--CCCCChhHHHHHHHHHHHC-CCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCC
Q psy2895 64 FMIMGSICTRRCKFCNISH--GR--PDPLDIEEPKKIAYTINKL-KLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLST 138 (293)
Q Consensus 64 ~~~~t~~C~~~C~fC~~~~--~~--~~~~~~eei~~~~~~~~~~-G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~ 138 (293)
.+.+|++|+.+|.||..+. +. ...++.+++.+.++.+.+. |+++|+|+||++-.+ +.+++.++++.+++. +
T Consensus 91 ll~vT~~C~~~Cr~C~r~~~~~~~~~~~l~~~e~~~~i~~i~~~~~I~~VilSGGDPl~~---~~~~L~~ll~~l~~i-~ 166 (321)
T TIGR03822 91 LLKPVHVCPVYCRFCFRREMVGPEGLGVLSPAELDAAFAYIADHPEIWEVILTGGDPLVL---SPRRLGDIMARLAAI-D 166 (321)
T ss_pred EEEecCCCCCcCcCCCchhhcCCcccCcCCHHHHHHHHHHHHhCCCccEEEEeCCCcccC---CHHHHHHHHHHHHhC-C
Confidence 3456999999999999765 22 2457889999988888755 899999999996322 246889999999875 3
Q ss_pred Cc-EEEEEc------CCCcCcHHHHHHHHHHcCCCeeeeccccc-hHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEe
Q psy2895 139 KI-KIEILI------PDFRNQINHVLKIFKQALPDVLNHNIETV-PRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSG 210 (293)
Q Consensus 139 ~~-~i~~~~------~~~~~~~~e~l~~l~~aG~~~i~~~less-~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~ 210 (293)
.+ .+++.| |..++ ++.++.|+++|. .+.+++++. ++- + .++.+++++.++++ |+.+...
T Consensus 167 ~v~~iri~Tr~~v~~p~rit--~ell~~L~~~g~-~v~i~l~~~h~~e---l-----~~~~~~ai~~L~~~--Gi~v~~q 233 (321)
T TIGR03822 167 HVKIVRFHTRVPVADPARVT--PALIAALKTSGK-TVYVALHANHARE---L-----TAEARAACARLIDA--GIPMVSQ 233 (321)
T ss_pred CccEEEEeCCCcccChhhcC--HHHHHHHHHcCC-cEEEEecCCChhh---c-----CHHHHHHHHHHHHc--CCEEEEE
Confidence 33 355544 23344 889999999995 467888873 221 1 47899999999999 9987654
Q ss_pred EEe--ecCCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCccccccccChhHHHHHHHHHH
Q psy2895 211 IMV--GLGENDEEILTVIHDMRNHNIDILTIGQYLMPSRLHLPVHRYLHPKFFEKFKKIAY 269 (293)
Q Consensus 211 ~iv--G~gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~~a~~r~~~p~~~~~~~~~~~ 269 (293)
.++ |.+++.+++.++++++.++|+.-..++ .+.|.+++ +..+ +..++...+.+.++
T Consensus 234 ~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~-~~~p~~g~-~~f~-~~~~~~~~i~~~l~ 291 (321)
T TIGR03822 234 SVLLRGVNDDPETLAALMRAFVECRIKPYYLH-HLDLAPGT-AHFR-VTIEEGQALVRALR 291 (321)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEE-ecCCCCCc-cccc-CcHHHHHHHHHHHH
Confidence 333 779999999999999999999988887 56677653 2233 45555544444433
No 105
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.63 E-value=8.5e-14 Score=127.18 Aligned_cols=195 Identities=12% Similarity=0.158 Sum_probs=140.3
Q ss_pred eeeCcccCCCCcCcccCC-CCCCCCChhHHHHHHHHH--------HHCCCcEEEEee-ecCCCCCCCChhHHHHHHHHHH
Q psy2895 65 MIMGSICTRRCKFCNISH-GRPDPLDIEEPKKIAYTI--------NKLKLNYVVITS-VNRDDLHDGGSSHFVSCIKHIR 134 (293)
Q Consensus 65 ~~~t~~C~~~C~fC~~~~-~~~~~~~~eei~~~~~~~--------~~~G~~~i~l~g-g~~~~l~~~~~~~~~~ll~~i~ 134 (293)
+-.+.|||.+|.||.... +..+.++.+||.+.+..+ ...+++.|+++| |+| +. +.+.+.++++.++
T Consensus 125 iSsq~GCnl~C~FC~tg~~g~~rnLt~~EI~~qv~~~~~~~~~~~~~~~v~nIvfmGmGEP--Ll--n~d~v~~~i~~l~ 200 (368)
T PRK14456 125 ISSQAGCALRCSFCATGQMGFRRNLTAGEITGQVFALSDMLAERNRERGITNIVFMGMGEP--LL--NTDNVFEAVLTLS 200 (368)
T ss_pred EEecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhhccCCccEEEEeCcCcc--cc--CHHHHHHHHHHHh
Confidence 334799999999998765 444568999998886433 235789999999 885 32 2456888888887
Q ss_pred hhCCC-----cEEEEEcCCCcCcHHHHHHHHHHcCCC-eeeecccc-chHHHhhcC----CCCCHHHHHHHHHH-HHHhC
Q psy2895 135 KLSTK-----IKIEILIPDFRNQINHVLKIFKQALPD-VLNHNIET-VPRLYKKVR----PGSDYKHSLNLLKN-FKKLY 202 (293)
Q Consensus 135 ~~~~~-----~~i~~~~~~~~~~~~e~l~~l~~aG~~-~i~~~les-s~~~~~~i~----~~~~~e~~l~~i~~-~~~~~ 202 (293)
+.... -+|++.|+|+. +.+++|.++|++ .+.+++++ .++.++++. ++++++++++.++. +.+.
T Consensus 201 ~~~~~~~is~r~ItisT~Gl~----~~i~~L~~~gl~~~LaiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~- 275 (368)
T PRK14456 201 TRKYRFSISQRKITISTVGIT----PEIDRLATSGLKTKLAVSLHSADQEKRERLMPQAARDYPLDELREALIGYASKT- 275 (368)
T ss_pred ccccccCcCcCeeEEECCCCh----HHHHHHHHcCCCceEEEEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhc-
Confidence 64111 25677776643 357999999997 89999999 699999885 35689999999985 4555
Q ss_pred CCce--eeEeEEeecCCCHHHHHHHHHHHHhCC--CCEEEeecCCCCCCCccccccccChhHHHHHHHHHHHhcccc
Q psy2895 203 PNIL--TKSGIMVGLGENDEEILTVIHDMRNHN--IDILTIGQYLMPSRLHLPVHRYLHPKFFEKFKKIAYKLGFKN 275 (293)
Q Consensus 203 pgi~--~~~~~ivG~gEt~ed~~~~l~~l~~l~--~~~i~i~~~~~p~~~~~a~~r~~~p~~~~~~~~~~~~~G~~~ 275 (293)
|.. +..-+|-|+.++++|+.+++++++.+. ++.|+++++ .+.+ ++-..++....+.+...+.|+..
T Consensus 276 -g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn~~-~~~~-----~~~ps~e~i~~F~~~L~~~Gi~v 345 (368)
T PRK14456 276 -GEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDYNSI-VNIK-----FEPVCSSTRERFRDRLLDAGLQV 345 (368)
T ss_pred -CCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeeccC-CCCC-----CCCCCHHHHHHHHHHHHHCCCcE
Confidence 654 445566688999999999999999974 455555422 2211 22234566788888888888864
No 106
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=99.59 E-value=2.9e-13 Score=125.04 Aligned_cols=173 Identities=11% Similarity=0.101 Sum_probs=125.9
Q ss_pred eCcccCCCCcCcccCCCC-------CCCCChhHHHHHHHHHHHC--CCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhC
Q psy2895 67 MGSICTRRCKFCNISHGR-------PDPLDIEEPKKIAYTINKL--KLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLS 137 (293)
Q Consensus 67 ~t~~C~~~C~fC~~~~~~-------~~~~~~eei~~~~~~~~~~--G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~ 137 (293)
.|..||.+|.||..+... ...++.+.+.+.++.+.+. +...|.|+|||| .+. ..+.+.++++.+++..
T Consensus 11 ~t~~CNl~C~yC~~~~~~~~~~~~~~~~m~~~~~~~~i~~~~~~~~~~~~i~~~GGEP-ll~--~~~~~~~~~~~~~~~~ 87 (370)
T PRK13758 11 ASSGCNLKCTYCFYHSLSDNRNVKSYGIMRDEVLESMVKRVLNEAEGHCSFAFQGGEP-TLA--GLEFFEELMELQRKHN 87 (370)
T ss_pred CCCCcCCCCcccCCcCccccccccccCCCCHHHHHHHHHHHHhccCCceEEEEECCcc-ccC--ChHHHHHHHHHHHHhc
Confidence 358999999999986521 1247777777777766554 445789999996 231 1345678888887753
Q ss_pred -CCc--EEEEEcCCCcCcHHHHHHHHHHcCCCeeeeccccchHHHhhcCC----CCCHHHHHHHHHHHHHhCCCceeeEe
Q psy2895 138 -TKI--KIEILIPDFRNQINHVLKIFKQALPDVLNHNIETVPRLYKKVRP----GSDYKHSLNLLKNFKKLYPNILTKSG 210 (293)
Q Consensus 138 -~~~--~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~less~~~~~~i~~----~~~~e~~l~~i~~~~~~~pgi~~~~~ 210 (293)
.++ .+.+.|+|+.-+ ++.++.|++.++ .+.+++++.+++++..++ ..+++.+++.++.+++. |+.+...
T Consensus 88 ~~~~~~~~~i~TNG~ll~-~~~~~~l~~~~~-~v~iSlDg~~~~hd~~R~~~~g~~~f~~v~~~i~~l~~~--~~~~~i~ 163 (370)
T PRK13758 88 YKNLKIYNSLQTNGTLID-ESWAKFLSENKF-LVGLSMDGPKEIHNLNRKDCCGLDTFSKVERAAELFKKY--KVEFNIL 163 (370)
T ss_pred cCCCeEEEEEEecCEecC-HHHHHHHHHcCc-eEEEeecCCHHHhccccCCCCCCccHHHHHHHHHHHHHh--CCCceEE
Confidence 223 346677764332 788999998886 899999997778888773 45899999999999999 8876666
Q ss_pred EEeecCCCHHHHHHHHHHHHhCCCCEEEeecCCCCCC
Q psy2895 211 IMVGLGENDEEILTVIHDMRNHNIDILTIGQYLMPSR 247 (293)
Q Consensus 211 ~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~ 247 (293)
+++. ..+.+++.+.++++.++|++.+.+.+.+.|..
T Consensus 164 ~~v~-~~n~~~l~~i~~~~~~~g~~~~~~~~~~~p~~ 199 (370)
T PRK13758 164 CVVT-SNTARHVNKIYKYFKEKDFKFLQFINCLDPLY 199 (370)
T ss_pred EEec-cccccCHHHHHHHHHHcCCCeEeeeeccCccc
Confidence 5554 56778899999999999999876643344543
No 107
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2.1e-13 Score=119.43 Aligned_cols=207 Identities=14% Similarity=0.196 Sum_probs=147.2
Q ss_pred eeEeeeeCcccCCCCcCcccCCCCC--CC-----CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHH
Q psy2895 61 VATFMIMGSICTRRCKFCNISHGRP--DP-----LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHI 133 (293)
Q Consensus 61 ~~~~~~~t~~C~~~C~fC~~~~~~~--~~-----~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i 133 (293)
...+++.+.|||++|.||..+.... +. +++|.+.+.+. ...+...|.++||++ .+ ..+.+.++++.+
T Consensus 35 ~~~~~vf~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~~--~~~~~~gvt~SGGEP-~~---q~e~~~~~~~~a 108 (260)
T COG1180 35 SIRLSVFLQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKAF--YSESGGGVTFSGGEP-TL---QAEFALDLLRAA 108 (260)
T ss_pred cEEEEEEeCCCCCCCCCCCChhHhcccccCchhhcCHHHHHHHhh--hcCCCCEEEEECCcc-hh---hHHHHHHHHHHH
Confidence 3445556899999999999876322 22 33344433321 223678899999996 23 267899999999
Q ss_pred HhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCce--eeEe
Q psy2895 134 RKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNIL--TKSG 210 (293)
Q Consensus 134 ~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~--~~~~ 210 (293)
++. ++.+.+-|+|+.. .+.++.|.+. +|.+.+.+.. +++.|+++... +.+.+++.++.+.+. |.. +.+.
T Consensus 109 ke~--Gl~~~l~TnG~~~--~~~~~~l~~~-~D~v~~DlK~~~~~~y~~~tg~-~~~~vl~~~~~l~~~--g~~ve~r~l 180 (260)
T COG1180 109 KER--GLHVALDTNGFLP--PEALEELLPL-LDAVLLDLKAFDDELYRKLTGA-DNEPVLENLELLADL--GVHVEIRTL 180 (260)
T ss_pred HHC--CCcEEEEcCCCCC--HHHHHHHHhh-cCeEEEeeccCChHHHHHHhCC-CcHHHHHHHHHHHcC--CCeEEEEEE
Confidence 987 5677777888887 7777888776 8999999988 78889998843 449999999999997 774 5566
Q ss_pred EEeecCCCHHHHHHHHHHHHhCCCC-EEEeecCCCCCCCccccccccC-hhHHHHHHHHHHHhcccchhccccccc
Q psy2895 211 IMVGLGENDEEILTVIHDMRNHNID-ILTIGQYLMPSRLHLPVHRYLH-PKFFEKFKKIAYKLGFKNVLVGSMIRS 284 (293)
Q Consensus 211 ~ivG~gEt~ed~~~~l~~l~~l~~~-~i~i~~~~~p~~~~~a~~r~~~-p~~~~~~~~~~~~~G~~~~~~~~~~~~ 284 (293)
+|-|++++.+++.+.++++.+++.. -+.+.+|.++.. .-.+... ....+++.+.+.+.|.+.++.++...+
T Consensus 181 viPg~~d~~e~i~~i~~~i~~~~~~~p~~~l~fhp~~~---~~~~p~~~~~~le~~~~~a~~~~~~~v~~~~~~~~ 253 (260)
T COG1180 181 VIPGYNDDEEEIRELAEFIADLGPEIPIHLLRFHPDYK---LKDLPPTPVETLEEAKKLAKEEGLKFVYIGNVPGH 253 (260)
T ss_pred EECCCCCCHHHHHHHHHHHHhcCCcccEEEeccccCcc---ccccCCCcHHHHHHhHhhhHHHHHHhHhhhcccCc
Confidence 7778889999999999999986543 344443432211 1111122 244677888888999998888876543
No 108
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.58 E-value=5.9e-13 Score=121.39 Aligned_cols=200 Identities=16% Similarity=0.174 Sum_probs=138.5
Q ss_pred eEeeeeCcccCCCCcCcccCC-CCCCCCChhHHHHHHHHHHH---CCCcEEEEee-ecCCCCCCCChhHHHHHHHHHHhh
Q psy2895 62 ATFMIMGSICTRRCKFCNISH-GRPDPLDIEEPKKIAYTINK---LKLNYVVITS-VNRDDLHDGGSSHFVSCIKHIRKL 136 (293)
Q Consensus 62 ~~~~~~t~~C~~~C~fC~~~~-~~~~~~~~eei~~~~~~~~~---~G~~~i~l~g-g~~~~l~~~~~~~~~~ll~~i~~~ 136 (293)
..++..+.||+.+|.||.... +..+.++.+||++.+..+.. .++..|+++| |+| +. +.+.+.+.++.+++.
T Consensus 102 t~cissq~GC~l~C~fC~tg~~g~~r~lt~~EI~~qv~~~~~~~~~~v~~Vvf~GmGEP--Ll--n~d~v~~~i~~l~~~ 177 (343)
T PRK14469 102 TACISTQVGCPVKCIFCATGQSGFVRNLTTGEIVSQILAMEKEEKKKVGNVVYMGMGEP--LL--NYENVIKSIKILNHK 177 (343)
T ss_pred EEEEEecCCCCCcCcCCCCCCCCccccCCHHHHHHHHHHHHHhccCCcCeEEEEccChh--hh--hHHHHHHHHHHHhch
Confidence 334445699999999998754 33456899999988765432 3678999999 885 32 245677888887542
Q ss_pred C-CC--c-EEEEEcCCCcCcHHHHHHHHHHcCCC-eeeecccc-chHHHhhcC---CCCCHHHHHHHHHHHHHhCCCce-
Q psy2895 137 S-TK--I-KIEILIPDFRNQINHVLKIFKQALPD-VLNHNIET-VPRLYKKVR---PGSDYKHSLNLLKNFKKLYPNIL- 206 (293)
Q Consensus 137 ~-~~--~-~i~~~~~~~~~~~~e~l~~l~~aG~~-~i~~~les-s~~~~~~i~---~~~~~e~~l~~i~~~~~~~pgi~- 206 (293)
. .+ . .+++.|+|+ .+.++.|.+.|++ .+.+++++ +++.++++. ++++.+++++.++...+.. +..
T Consensus 178 ~~~~~g~~~itisTnG~----~~~i~~L~~~~l~~~LaiSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~~~~~-~~~v 252 (343)
T PRK14469 178 KMKNIGIRRITISTVGI----PEKIIQLAEEGLDVKLALSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIYQKKT-GNRV 252 (343)
T ss_pred hcccCCCCeEEEECCCC----hHHHHHHHhhCCCcEEEEEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHHHHHh-CCeE
Confidence 1 11 2 677777664 3567888888998 69999999 688888865 3579999999998765541 333
Q ss_pred -eeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCccccccccChhHHHHHHHHHHHhcccc
Q psy2895 207 -TKSGIMVGLGENDEEILTVIHDMRNHNIDILTIGQYLMPSRLHLPVHRYLHPKFFEKFKKIAYKLGFKN 275 (293)
Q Consensus 207 -~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~~a~~r~~~p~~~~~~~~~~~~~G~~~ 275 (293)
+..-+|-|+.++.+|+.++.++++.+++. +.+-+|- |... -.+-..++.+.++.+...+.|+..
T Consensus 253 ~i~yvlI~g~NDs~ed~~~La~llk~~~~~-VnLIpyn-p~~~---~~~~ps~e~l~~f~~~l~~~gi~v 317 (343)
T PRK14469 253 TIEYILIKGFNDEIEDAKKLAELLKGLKVF-VNLIPVN-PTVP---GLEKPSRERIERFKEILLKNGIEA 317 (343)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCcE-EEEEecC-CCCc---cCCCCCHHHHHHHHHHHHHCCCeE
Confidence 44556668899999999999999988653 4444342 3221 122234556777877777777653
No 109
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=99.58 E-value=4.9e-13 Score=121.93 Aligned_cols=190 Identities=20% Similarity=0.266 Sum_probs=143.4
Q ss_pred eeEeeeeCcccCCCCcCcccCCCC--CCCCChhHHHHHHHHHHHCC-CcEEEEeeecCCCCCCCChhHHHHHHHHHHhhC
Q psy2895 61 VATFMIMGSICTRRCKFCNISHGR--PDPLDIEEPKKIAYTINKLK-LNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLS 137 (293)
Q Consensus 61 ~~~~~~~t~~C~~~C~fC~~~~~~--~~~~~~eei~~~~~~~~~~G-~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~ 137 (293)
....+.+|+.||.+|.||...... ...++.++..+.+.++.+.| ...+.++||+| .+. ..+.++++.+++.
T Consensus 19 ~~~~~~~t~~Cnl~C~~C~~~~~~~~~~el~~~~~~~~~~~~~~~g~~~~v~~~gGEP-ll~----~d~~ei~~~~~~~- 92 (347)
T COG0535 19 LVVGIELTNRCNLACKHCYAEAGKKLPGELSTEEDLRVIDELAELGEIPVVIFTGGEP-LLR----PDLLEIVEYARKK- 92 (347)
T ss_pred cEEEEeeccccCCcCcccccccCCCCccccCHHHHHHHHHHHHHcCCeeEEEEeCCCc-ccc----ccHHHHHHHHhhc-
Confidence 344456799999999999988765 36789999998888999999 88889999985 332 5788888888865
Q ss_pred CCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCC-CCCHHHHHHHHHHHHHhCCCceeeEeEEeec
Q psy2895 138 TKIKIEILIPDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRP-GSDYKHSLNLLKNFKKLYPNILTKSGIMVGL 215 (293)
Q Consensus 138 ~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~-~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~ 215 (293)
+++.+.+.|+++... ++.++.++++|++.+.+++++ .++.++.++. ...++..+++++.+++. |+.+.+.+.+.
T Consensus 93 ~~~~~~~~TnG~~~~-~~~~~~l~~~g~~~v~iSid~~~~e~hd~~rg~~g~~~~~~~~i~~~~~~--g~~~~~~~~v~- 168 (347)
T COG0535 93 GGIRVSLSTNGTLLT-EEVLEKLKEAGLDYVSISLDGLDPETHDPIRGVKGVFKRAVEAIKNLKEA--GILVVINTTVT- 168 (347)
T ss_pred CCeEEEEeCCCccCC-HHHHHHHHhcCCcEEEEEecCCChhhhhhhcCCCcHHHHHHHHHHHHHHc--CCeeeEEEEEe-
Confidence 456677777763222 789999999999999999999 5788888875 56899999999999999 98633333222
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCccc-cccccChhHH
Q psy2895 216 GENDEEILTVIHDMRNHNIDILTIGQYLMPSRLHLP-VHRYLHPKFF 261 (293)
Q Consensus 216 gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~~a-~~r~~~p~~~ 261 (293)
+.+.+++.+..+++.++|++.+.+. .+.|..+... ....+.|...
T Consensus 169 ~~n~~~l~~~~~~~~~~g~~~~~~~-~~~~~g~~~~~~~~~~~~~~~ 214 (347)
T COG0535 169 KINYDELPEIADLAAELGVDELNVF-PLIPVGRGEENLELDLTPEEE 214 (347)
T ss_pred cCcHHHHHHHHHHHHHcCCCEEEEE-EEeecccccccccccCCHHHH
Confidence 7889999999999999998777765 3344332221 2334455443
No 110
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=99.58 E-value=2.8e-13 Score=112.03 Aligned_cols=199 Identities=18% Similarity=0.171 Sum_probs=144.3
Q ss_pred EeeeeCcccCCCCcCcccCCCCC-CCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcE
Q psy2895 63 TFMIMGSICTRRCKFCNISHGRP-DPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIK 141 (293)
Q Consensus 63 ~~~~~t~~C~~~C~fC~~~~~~~-~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~ 141 (293)
.....++.|..+|.+|+...-+. -..+.++++....++.+.|.+.+.++||-.+.. ....+.|.+.+++++++. ++.
T Consensus 13 sISVTG~yC~lnC~HCg~~~L~~Mi~vt~~~l~k~~~el~kkGy~g~llSGGm~srg-~VPl~kf~d~lK~lke~~-~l~ 90 (275)
T COG1856 13 SISVTGAYCSLNCPHCGRHYLEHMIKVTTKSLLKRCMELEKKGYEGCLLSGGMDSRG-KVPLWKFKDELKALKERT-GLL 90 (275)
T ss_pred eEEEeccceEecChHHHHHHHHHhcccchHHHHHHHHHHHhcCceeEEEeCCcCCCC-CccHHHHHHHHHHHHHhh-CeE
Confidence 34445799999999998765321 235568899998999999999999999975433 234789999999999864 233
Q ss_pred EEEEcCCCcCcHHHHHHHHHHcCCCeeeeccccchHHHhhcC-CCCCHHHHHHHHHHHHHhCCCceeeEeEEeec--CCC
Q psy2895 142 IEILIPDFRNQINHVLKIFKQALPDVLNHNIETVPRLYKKVR-PGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL--GEN 218 (293)
Q Consensus 142 i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~less~~~~~~i~-~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~--gEt 218 (293)
+.+.+ |+.. ++.++.|+++++|.+.+.+=+.+++.+.+- -.++.+++++.++.+++. |+++.-++++|+ |--
T Consensus 91 inaHv-Gfvd--E~~~eklk~~~vdvvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~--~irvvpHitiGL~~gki 165 (275)
T COG1856 91 INAHV-GFVD--ESDLEKLKEELVDVVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKEN--GIRVVPHITIGLDFGKI 165 (275)
T ss_pred EEEEe-eecc--HHHHHHHHHhcCcEEEEeecCChHHHHHHHcCCccHHHHHHHHHHHHHc--CceeceeEEEEeccCcc
Confidence 44333 7777 889999999999999887666555555543 366899999999999999 999999999999 444
Q ss_pred HHHHHHHHHHHHhCCCCEEEeecCCCCCCCc-cccccccChhHHHHHHHHHHH
Q psy2895 219 DEEILTVIHDMRNHNIDILTIGQYLMPSRLH-LPVHRYLHPKFFEKFKKIAYK 270 (293)
Q Consensus 219 ~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~-~a~~r~~~p~~~~~~~~~~~~ 270 (293)
.-| .+.++.+.+..+|.+-+. -+.|.+++ +...+-..+++..++-++|++
T Consensus 166 ~~e-~kaIdiL~~~~~DalVl~-vliPtpGtkm~~~~pp~~eE~i~v~~~AR~ 216 (275)
T COG1856 166 HGE-FKAIDILVNYEPDALVLV-VLIPTPGTKMGNSPPPPVEEAIKVVKYARK 216 (275)
T ss_pred cch-HHHHHHHhcCCCCeEEEE-EEecCCchhccCCCCcCHHHHHHHHHHHHH
Confidence 344 467799999999987775 55666542 122222344555555555555
No 111
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.58 E-value=8.2e-13 Score=120.21 Aligned_cols=201 Identities=9% Similarity=0.113 Sum_probs=134.8
Q ss_pred eEeeeeCcccCCCCcCcccCC-CCCCCCChhHHHHHHHHHHH-CCCcEEEEee-ecCCCCCCCChhHHHHHHHHHHhhC-
Q psy2895 62 ATFMIMGSICTRRCKFCNISH-GRPDPLDIEEPKKIAYTINK-LKLNYVVITS-VNRDDLHDGGSSHFVSCIKHIRKLS- 137 (293)
Q Consensus 62 ~~~~~~t~~C~~~C~fC~~~~-~~~~~~~~eei~~~~~~~~~-~G~~~i~l~g-g~~~~l~~~~~~~~~~ll~~i~~~~- 137 (293)
..++..+.||+.+|.||.... +..+.++.+||++.+..+.. .+++.|+++| |+| +. +.+.+.+.++.+++..
T Consensus 104 t~cvSsq~GC~~~C~FC~tg~~~~~r~lt~~EI~~qv~~~~~~~~i~~IvfmG~GEP--l~--n~~~vi~~l~~l~~~~g 179 (349)
T PRK14463 104 TLCISSQVGCAMGCAFCLTGTFRLTRNLTTAEIVNQVCAVKRDVPVRNIVFMGMGEP--LA--NLDNVIPALQILTDPDG 179 (349)
T ss_pred EEEEEecCCcCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCccEEEEecCCcc--hh--cHHHHHHHHHHhhcccc
Confidence 345556899999999997654 23467999999988877653 4789999999 774 32 3566777777765421
Q ss_pred ---CCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcC---CCCCHHHHHHHHHHHHHhCCCce--ee
Q psy2895 138 ---TKIKIEILIPDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVR---PGSDYKHSLNLLKNFKKLYPNIL--TK 208 (293)
Q Consensus 138 ---~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~---~~~~~e~~l~~i~~~~~~~pgi~--~~ 208 (293)
+.-++.+.|+|+.. .+..+.+...-.+.+++++ ++++++++. +.++.+++++.++...+.. +-. +.
T Consensus 180 l~~s~r~itVsTnGl~~----~i~~l~~~~~~~LaiSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~-~~~v~ie 254 (349)
T PRK14463 180 LQFSTRKVTVSTSGLVP----EMEELGREVTVNLAVSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPG-RRKITIE 254 (349)
T ss_pred cCcCCceEEEECCCchH----HHHHHhhccCeEEEEeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhc-CCeEEEE
Confidence 12267777777543 3444544332346688999 799999974 4678899999887766541 234 44
Q ss_pred EeEEeecCCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCccccccccChhHHHHHHHHHHHhcccc
Q psy2895 209 SGIMVGLGENDEEILTVIHDMRNHNIDILTIGQYLMPSRLHLPVHRYLHPKFFEKFKKIAYKLGFKN 275 (293)
Q Consensus 209 ~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~~a~~r~~~p~~~~~~~~~~~~~G~~~ 275 (293)
..+|-|++++++++.++.++++.++. .+.+-|| .|..+ .-++-..++...++.+...+.|+..
T Consensus 255 yvLI~GvNDs~e~~~~L~~ll~~l~~-~vnlIPy-n~~~~--~~~~~ps~e~i~~f~~~L~~~gi~v 317 (349)
T PRK14463 255 YVMIRGLNDSLEDAKRLVRLLSDIPS-KVNLIPF-NEHEG--CDFRSPTQEAIDRFHKYLLDKHVTV 317 (349)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhccCc-eEEEEec-CCCCC--CCCCCCCHHHHHHHHHHHHHCCceE
Confidence 45666779999999999999999875 4555444 23322 1122234566778888888777753
No 112
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.58 E-value=7.7e-13 Score=120.77 Aligned_cols=195 Identities=11% Similarity=0.100 Sum_probs=134.9
Q ss_pred eCcccCCCCcCcccCC-CCCCCCChhHHHHHHHHHHH------CCCcEEEEee-ecCCCCCCCChhHHHHHHHHHHhhCC
Q psy2895 67 MGSICTRRCKFCNISH-GRPDPLDIEEPKKIAYTINK------LKLNYVVITS-VNRDDLHDGGSSHFVSCIKHIRKLST 138 (293)
Q Consensus 67 ~t~~C~~~C~fC~~~~-~~~~~~~~eei~~~~~~~~~------~G~~~i~l~g-g~~~~l~~~~~~~~~~ll~~i~~~~~ 138 (293)
.+.||+.+|.||..+. +..+.++++||++.+..... .|++.|+++| |+| +. +.+.+.++++.+++..
T Consensus 115 sqvGC~~~C~FC~t~~~~~~r~lt~~EIv~qv~~~~~~~~~~g~~v~~Vv~~GmGEP--Ll--n~~~v~~~l~~l~~~~- 189 (356)
T PRK14455 115 TQVGCRIGCTFCASTLGGLKRDLEAGEIVAQVMLVQKYLDETEERVSHIVVMGIGEP--FD--NYDNVMDFLRIINDDK- 189 (356)
T ss_pred CCCCCCCCCCcCCCCCCCCCccCCHHHHHHHHHHHHHHHhhcCCCcceEEEeccccc--cC--CHHHHHHHHHHHhccc-
Confidence 3589999999999876 34567999999998775422 3578899988 664 32 2578889999887631
Q ss_pred Cc-----EEEEEcCCCcCcHHHHHHHHHHcCCC-eeeecccc-chHHHhhcC---CCCCHHHHHHHHHHHHHhCCCce--
Q psy2895 139 KI-----KIEILIPDFRNQINHVLKIFKQALPD-VLNHNIET-VPRLYKKVR---PGSDYKHSLNLLKNFKKLYPNIL-- 206 (293)
Q Consensus 139 ~~-----~i~~~~~~~~~~~~e~l~~l~~aG~~-~i~~~les-s~~~~~~i~---~~~~~e~~l~~i~~~~~~~pgi~-- 206 (293)
++ ++.+.|+|+.. .+..+.+.+++ .+.+++.+ +++.++++. ++++.+++++.++.+.+.. +..
T Consensus 190 g~~~s~r~itvsT~G~~~----~i~~l~d~~l~~~LaiSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~-~~~v~ 264 (356)
T PRK14455 190 GLAIGARHITVSTSGIAP----KIYDFADEGLQINLAISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKT-NRRVT 264 (356)
T ss_pred CcccCCCceEEEecCchH----hHHHHHhcccCeeEEeccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhc-CCeEE
Confidence 23 56677766653 34555566544 25578888 689998755 4578999999999886641 344
Q ss_pred eeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCccccccccChhHHHHHHHHHHHhcccc
Q psy2895 207 TKSGIMVGLGENDEEILTVIHDMRNHNIDILTIGQYLMPSRLHLPVHRYLHPKFFEKFKKIAYKLGFKN 275 (293)
Q Consensus 207 ~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~~a~~r~~~p~~~~~~~~~~~~~G~~~ 275 (293)
+...+|-|++++.+|+.++.++++.++. .+.+-||. |.+.. -++-..++....+.+.+.+.|+..
T Consensus 265 iey~lI~gvNDs~ed~~~La~ll~~l~~-~VnLIPyn-p~~~~--ky~~ps~e~l~~f~~~L~~~gi~v 329 (356)
T PRK14455 265 FEYILLGGVNDQVEHAEELADLLKGIKC-HVNLIPVN-PVPER--DYVRTPKEDIFAFEDTLKKNGVNC 329 (356)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhcCCC-cEEEEecC-cCCCC--CCcCCCHHHHHHHHHHHHHCCCcE
Confidence 4455666789999999999999999873 45544442 33221 122244566778888888888754
No 113
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.57 E-value=9.4e-13 Score=120.00 Aligned_cols=199 Identities=11% Similarity=0.122 Sum_probs=139.7
Q ss_pred eeeeCcccCCCCcCcccCC-CCCCCCChhHHHHHHHHHHH---C------C--CcEEEEee-ecCCCCCCCChhHHHHHH
Q psy2895 64 FMIMGSICTRRCKFCNISH-GRPDPLDIEEPKKIAYTINK---L------K--LNYVVITS-VNRDDLHDGGSSHFVSCI 130 (293)
Q Consensus 64 ~~~~t~~C~~~C~fC~~~~-~~~~~~~~eei~~~~~~~~~---~------G--~~~i~l~g-g~~~~l~~~~~~~~~~ll 130 (293)
++-.+-||+.+|.||+.+. +..+.++.+||++.+..+.. . | ++.|+|.| |+| +. +.+.+.+.+
T Consensus 124 CvSsQvGC~m~C~FCatg~~g~~RnLt~~EIv~Qv~~~~~~~~~~~~~~~~~~i~nVvfmGmGEP--Ll--N~d~V~~~i 199 (373)
T PRK14459 124 CISSQAGCGMACPFCATGQGGLTRNLSTAEIVEQVRAAARALRDGEVPGGPGRLSNVVFMGMGEP--LA--NYKRVVAAV 199 (373)
T ss_pred EEEecCCCCCcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHhhhcccccCCCceeEEEEecCCcc--hh--hHHHHHHHH
Confidence 3344699999999999765 33467999999998876642 1 1 67799999 885 32 257788888
Q ss_pred HHHHhh---CCCc---EEEEEcCCCcCcHHHHHHHHHHcCCC-eeeecccc-chHHHhhcCC---CCCHHHHHHHHHHHH
Q psy2895 131 KHIRKL---STKI---KIEILIPDFRNQINHVLKIFKQALPD-VLNHNIET-VPRLYKKVRP---GSDYKHSLNLLKNFK 199 (293)
Q Consensus 131 ~~i~~~---~~~~---~i~~~~~~~~~~~~e~l~~l~~aG~~-~i~~~les-s~~~~~~i~~---~~~~e~~l~~i~~~~ 199 (293)
+.+++. +.++ ++++.|.|+.. .+++|.+.+++ .+.+++.+ .++.++++.| .++.++.++.++...
T Consensus 200 ~~l~~~~~~g~gis~r~ITvST~Gl~~----~i~~la~~~l~~~LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~ 275 (373)
T PRK14459 200 RRITAPAPEGLGISARNVTVSTVGLVP----AIRKLADEGLPVTLAVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYA 275 (373)
T ss_pred HHHhCcccccCCccCCEEEEECcCchh----HHHHHHHhcCCeEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHH
Confidence 888762 1133 66666666553 57788888876 78899988 6999999886 478999999976664
Q ss_pred -HhCCCceee--EeEEeecCCCHHHHHHHHHHHHhCC--CCEEEeecCCCCCCCccccccccChhHHHHHHHHHHHhccc
Q psy2895 200 -KLYPNILTK--SGIMVGLGENDEEILTVIHDMRNHN--IDILTIGQYLMPSRLHLPVHRYLHPKFFEKFKKIAYKLGFK 274 (293)
Q Consensus 200 -~~~pgi~~~--~~~ivG~gEt~ed~~~~l~~l~~l~--~~~i~i~~~~~p~~~~~a~~r~~~p~~~~~~~~~~~~~G~~ 274 (293)
+. |..+. .-+|-|+.++++|..++.++++.++ .-.|.+-||. |.+.. -++-...+...++.+...+.|+.
T Consensus 276 ~~~--grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIpyN-p~~~~--~y~~~~~~~~~~F~~~L~~~gi~ 350 (373)
T PRK14459 276 DAT--GRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIPLN-PTPGS--KWTASPPEVEREFVRRLRAAGVP 350 (373)
T ss_pred HHh--CCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEccC-CCCCC--CCcCCCHHHHHHHHHHHHHCCCe
Confidence 55 77655 4456688999999999999999884 2345554442 33221 12223345577888888888875
Q ss_pred c
Q psy2895 275 N 275 (293)
Q Consensus 275 ~ 275 (293)
.
T Consensus 351 ~ 351 (373)
T PRK14459 351 C 351 (373)
T ss_pred E
Confidence 3
No 114
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.56 E-value=1.4e-12 Score=117.93 Aligned_cols=198 Identities=12% Similarity=0.088 Sum_probs=138.7
Q ss_pred eEeeeeCcccCCCCcCcccCC-CCCCCCChhHHHHHHHHHHHC---CCcEEEEee-ecCCCCCCCChhHHHHHHHHHHhh
Q psy2895 62 ATFMIMGSICTRRCKFCNISH-GRPDPLDIEEPKKIAYTINKL---KLNYVVITS-VNRDDLHDGGSSHFVSCIKHIRKL 136 (293)
Q Consensus 62 ~~~~~~t~~C~~~C~fC~~~~-~~~~~~~~eei~~~~~~~~~~---G~~~i~l~g-g~~~~l~~~~~~~~~~ll~~i~~~ 136 (293)
..++..+.||+.+|.||.... +..+.++.+||++.+..+.+. .++.|+|+| |+| .+ +.+.+.++++.+++.
T Consensus 98 t~cvSsq~GC~l~C~fC~tg~~g~~r~l~~~EI~~qi~~~~~~~~~~i~nIvfmGmGEP-ll---N~d~v~~~i~~l~~~ 173 (336)
T PRK14470 98 VVCLSSQAGCALGCAFCATGKLGLDRSLRSWEIVAQLLAVRADSERPITGVVFMGQGEP-FL---NYDEVLRAAYALCDP 173 (336)
T ss_pred EEEEeCCCCcCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEEecCcc-cc---CHHHHHHHHHHHhCc
Confidence 344445699999999999875 344567888888887765432 478999999 885 22 246788888887753
Q ss_pred ----CCCcEEEEEcCCCcCcHHHHHHHHHHcCC-Ceeeecccc-chHHHhhcCC---CCCHHHHHHHHHHHHHhCCCce-
Q psy2895 137 ----STKIKIEILIPDFRNQINHVLKIFKQALP-DVLNHNIET-VPRLYKKVRP---GSDYKHSLNLLKNFKKLYPNIL- 206 (293)
Q Consensus 137 ----~~~~~i~~~~~~~~~~~~e~l~~l~~aG~-~~i~~~les-s~~~~~~i~~---~~~~e~~l~~i~~~~~~~pgi~- 206 (293)
.+..+|++.|+|... .+.++.+.+. +.+.+++.+ .++.++++.| +++.++.++.++...+. +-.
T Consensus 174 ~~~~~~~~~ItVsTnG~~p----~i~~l~~~~~~~~LaiSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~~--~rri 247 (336)
T PRK14470 174 AGARIDGRRISISTAGVVP----MIRRYTAEGHKFRLCISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAAL--RGRV 247 (336)
T ss_pred cccccCCCceEEEecCChH----HHHHHHhcCCCceEEEecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHh--CCCe
Confidence 124578888877643 3445555565 779999999 6899999875 46899999999999887 554
Q ss_pred -eeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCccccccccChhHHHHHHHHHH--Hhccc
Q psy2895 207 -TKSGIMVGLGENDEEILTVIHDMRNHNIDILTIGQYLMPSRLHLPVHRYLHPKFFEKFKKIAY--KLGFK 274 (293)
Q Consensus 207 -~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~~a~~r~~~p~~~~~~~~~~~--~~G~~ 274 (293)
+...+|-|+.++++|+.+..++++.+... +.+-+|.+| ++ -++-...+.+.++.+... +.|+.
T Consensus 248 ~ieyvLI~GvNDseeda~~La~llk~l~~~-vnlI~~N~~-~~---~~~~p~~~~i~~f~~~l~~~~~g~~ 313 (336)
T PRK14470 248 TLEYVMISGVNVGEEDAAALGRLLAGIPVR-LNPIAVNDA-TG---RYRPPDEDEWNAFRDALARELPGTP 313 (336)
T ss_pred EEEEEEEecccCCHHHHHHHHHHHhcCCCe-EEEeccCCC-CC---CccCCCHHHHHHHHHHHHHccCCeE
Confidence 44556778899999999999999988553 333234332 22 123234456778887773 55664
No 115
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.56 E-value=1.3e-12 Score=118.73 Aligned_cols=199 Identities=9% Similarity=0.094 Sum_probs=135.3
Q ss_pred eeeeCcccCCCCcCcccCC-CCCCCCChhHHHHHHHHHHHC-C-----CcEEEEee-ecCCCCCCCChhHHHHHHHHHHh
Q psy2895 64 FMIMGSICTRRCKFCNISH-GRPDPLDIEEPKKIAYTINKL-K-----LNYVVITS-VNRDDLHDGGSSHFVSCIKHIRK 135 (293)
Q Consensus 64 ~~~~t~~C~~~C~fC~~~~-~~~~~~~~eei~~~~~~~~~~-G-----~~~i~l~g-g~~~~l~~~~~~~~~~ll~~i~~ 135 (293)
++..+.||+.+|.||.... +..+.++.+||++.+..+... | ++.|+|+| |+| +. +.+.+.+.++.+..
T Consensus 96 cvSsq~GC~l~C~fC~tg~~g~~r~Lt~~EI~~qv~~~~~~~g~~~~~i~~Vvf~GmGEP--ll--n~~~v~~~i~~l~~ 171 (343)
T PRK14468 96 CVSTMVGCPAGCAFCATGAMGFGRNLTAAEILDQVLAVAGHEGISPREIRNVVLMGMGEP--LL--NYENVLKAARIMLH 171 (343)
T ss_pred EEEecCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcCcCcCCccEEEEeccCcc--cc--CHHHHHHHHHHhcc
Confidence 4445799999999998754 345679999999988765433 2 56899999 775 32 25666666666632
Q ss_pred h-CCC---cEEEEEcCCCcCcHHHHHHHHHHcCCC-eeeecccc-chHHHhhcCC---CCCHHHHHHHHHHHHHhCCCc-
Q psy2895 136 L-STK---IKIEILIPDFRNQINHVLKIFKQALPD-VLNHNIET-VPRLYKKVRP---GSDYKHSLNLLKNFKKLYPNI- 205 (293)
Q Consensus 136 ~-~~~---~~i~~~~~~~~~~~~e~l~~l~~aG~~-~i~~~les-s~~~~~~i~~---~~~~e~~l~~i~~~~~~~pgi- 205 (293)
. ..+ -.+++.|+|+ ...+++|.+++++ .+.+++.+ .++.++++.| +++.++.++.++...+.. +.
T Consensus 172 ~~g~~l~~r~itvST~G~----~~~i~~L~~~~l~~~LaiSL~a~d~e~r~~i~p~~~~~~l~~ll~~l~~~~~~~-~~~ 246 (343)
T PRK14468 172 PQALAMSPRRVTLSTVGI----PKGIRRLAEEDLGVRLALSLHAPDEETRQRIIPTAHRYSIAEIMAAVRHYQAVT-GRR 246 (343)
T ss_pred cccccccCceEEEECCCC----hHHHHHHHHhCcCcEEEEEcCCCCHHHHHHhccccccCCHHHHHHHHHHHHHhc-CCe
Confidence 2 111 1466777664 3467778888876 58889998 6899999874 458899999998665542 44
Q ss_pred -eeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCccccccccChhHHHHHHHHHHHhcccc
Q psy2895 206 -LTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIGQYLMPSRLHLPVHRYLHPKFFEKFKKIAYKLGFKN 275 (293)
Q Consensus 206 -~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~~a~~r~~~p~~~~~~~~~~~~~G~~~ 275 (293)
.+..-+|=|+.++.+|+.++.++++.+.. .+.+-||. |... .-++-..++.+.++.+...+.|+..
T Consensus 247 V~ieyvLI~GvNDs~e~~~~L~~ll~~~~~-~VnLIPyn-p~~~--~~~~~ps~e~i~~f~~~L~~~Gi~v 313 (343)
T PRK14468 247 VTLEYTMLKGVNDHLWQAELLADLLRGLVS-HVNLIPFN-PWEG--SPFQSSPRAQILAFADVLERRGVPV 313 (343)
T ss_pred EEEEEEEeCCCcCCHHHHHHHHHHHhcCCc-EEEEEcCC-CCCC--CCCCCCCHHHHHHHHHHHHHCCCeE
Confidence 44555666889999999999999999864 34444342 3221 1122245566777777777777753
No 116
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.55 E-value=2.7e-12 Score=115.78 Aligned_cols=195 Identities=15% Similarity=0.183 Sum_probs=134.9
Q ss_pred eCcccCCCCcCcccCC-CCCCCCChhHHHHHHHHHHHC-CCcEEEEee-ecCCCCCCCChhHHHHHHHHHHhhC----CC
Q psy2895 67 MGSICTRRCKFCNISH-GRPDPLDIEEPKKIAYTINKL-KLNYVVITS-VNRDDLHDGGSSHFVSCIKHIRKLS----TK 139 (293)
Q Consensus 67 ~t~~C~~~C~fC~~~~-~~~~~~~~eei~~~~~~~~~~-G~~~i~l~g-g~~~~l~~~~~~~~~~ll~~i~~~~----~~ 139 (293)
.+-||+.+|.||.... +..+.++.+||++.+..+... +++.|+|+| |+| +. +.+.+.+.++.++... +.
T Consensus 109 sQvGC~~~C~FC~Tg~~g~~rnLt~~EIl~Qv~~~~~~~~i~nIvfmGmGEP--L~--N~d~vi~al~~l~~~~g~~~s~ 184 (345)
T PRK14466 109 SQVGCKMNCLFCMTGKQGFTGNLTAAQILNQIYSLPERDKLTNLVFMGMGEP--LD--NLDEVLKALEILTAPYGYGWSP 184 (345)
T ss_pred cCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhhhhcCCCCeEEEeeeCcC--cc--cHHHHHHHHHHHhhccccCcCC
Confidence 3469999999999665 334569999999998877543 689999999 886 32 3566666666665432 11
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCC---CCCHHHHHHHHHHHHHhCCCce--eeEeEEe
Q psy2895 140 IKIEILIPDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRP---GSDYKHSLNLLKNFKKLYPNIL--TKSGIMV 213 (293)
Q Consensus 140 ~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~---~~~~e~~l~~i~~~~~~~pgi~--~~~~~iv 213 (293)
..|++.|+|... .+.++.+..--.+.+++.+ .++.++++.| .++.++.++.++...+.. +-. +...+|=
T Consensus 185 r~ItVsT~G~~~----~i~~l~~~~~~~LavSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~-~rri~~Ey~Li~ 259 (345)
T PRK14466 185 KRITVSTVGLKK----GLKRFLEESECHLAISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSK-QRRVSFEYIVFK 259 (345)
T ss_pred ceEEEEcCCCch----HHHHHhhccCcEEEEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhh-CCEEEEEEEEeC
Confidence 368888877543 2334333223356788888 6899999886 367899999998865542 333 4445566
Q ss_pred ecCCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCccccccccChhHHHHHHHHHHHhccc
Q psy2895 214 GLGENDEEILTVIHDMRNHNIDILTIGQYLMPSRLHLPVHRYLHPKFFEKFKKIAYKLGFK 274 (293)
Q Consensus 214 G~gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~~a~~r~~~p~~~~~~~~~~~~~G~~ 274 (293)
|++++.+|..++.++++.++. .|.+-+| .|.+.. -++-...+...++.+..++.|+.
T Consensus 260 gvND~~e~a~~L~~ll~~~~~-~VNLIp~-Np~~~~--~~~~~s~~~~~~F~~~L~~~gi~ 316 (345)
T PRK14466 260 GLNDSLKHAKELVKLLRGIDC-RVNLIRF-HAIPGV--DLEGSDMARMEAFRDYLTSHGVF 316 (345)
T ss_pred CCCCCHHHHHHHHHHHcCCCc-eEEEEec-CCCCCC--CCcCCCHHHHHHHHHHHHHCCCc
Confidence 789999999999999998873 5666544 354442 23334556678888888888874
No 117
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=99.55 E-value=7.5e-13 Score=123.80 Aligned_cols=174 Identities=11% Similarity=0.171 Sum_probs=126.0
Q ss_pred eEeee-eCcccCCCCcCcccCCC------CC-CCCChhHHHHHHHHHHHC-CCcE--EEEeeecCCCCCCCChhHHHHHH
Q psy2895 62 ATFMI-MGSICTRRCKFCNISHG------RP-DPLDIEEPKKIAYTINKL-KLNY--VVITSVNRDDLHDGGSSHFVSCI 130 (293)
Q Consensus 62 ~~~~~-~t~~C~~~C~fC~~~~~------~~-~~~~~eei~~~~~~~~~~-G~~~--i~l~gg~~~~l~~~~~~~~~~ll 130 (293)
...+. ++..||.+|.||..... .+ ..++.+.+.+.++++.+. +... +.++|||| .+. ....+.+++
T Consensus 14 ~~~~kp~~~~CNl~C~yC~~~~~~~~~~~~~~~~ms~e~~~~~i~~~~~~~~~~~v~i~f~GGEP-lL~--~~~~~~~~~ 90 (412)
T PRK13745 14 YIMLKPVGAVCNLACDYCYYLEKSKLYQENPKHVMSDELLEKFIKEYINSQTMPQVLFTWHGGET-LMR--PLSFYKKAL 90 (412)
T ss_pred EEEEeecCCCcCCCCcccCCcCCCcccccCccCCCCHHHHHHHHHHHHHcCCCCeEEEEEEcccc-CCC--cHHHHHHHH
Confidence 33344 34799999999998532 11 358999999999988764 5554 56689986 332 123455555
Q ss_pred HHHHhhC--CCcEEEEEcCC-CcCcHHHHHHHHHHcCCCeeeeccccchHHHhhcCC----CCCHHHHHHHHHHHHHhCC
Q psy2895 131 KHIRKLS--TKIKIEILIPD-FRNQINHVLKIFKQALPDVLNHNIETVPRLYKKVRP----GSDYKHSLNLLKNFKKLYP 203 (293)
Q Consensus 131 ~~i~~~~--~~~~i~~~~~~-~~~~~~e~l~~l~~aG~~~i~~~less~~~~~~i~~----~~~~e~~l~~i~~~~~~~p 203 (293)
+.+++.. .++.+.+.|+| +++ ++.++.|++.++ .+.+++++.+++++..++ ..+++++++.++.++++
T Consensus 91 ~~~~~~~~~~~i~~~i~TNG~ll~--~e~~~~l~~~~~-~v~ISlDG~~~~hD~~R~~~~g~gsf~~v~~~i~~l~~~-- 165 (412)
T PRK13745 91 ELQKKYARGRQIDNCIQTNGTLLT--DEWCEFFRENNF-LVGVSIDGPQEFHDEYRKNKMGKPSFVKVMKGINLLKKH-- 165 (412)
T ss_pred HHHHHHcCCCceEEEEeecCEeCC--HHHHHHHHHcCe-EEEEEecCCHHHhhhhcCCCCCCccHHHHHHHHHHHHHc--
Confidence 5544322 23455566776 445 889999999987 899999997778887763 35999999999999999
Q ss_pred CceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEeecCCC
Q psy2895 204 NILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIGQYLM 244 (293)
Q Consensus 204 gi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~~~~ 244 (293)
|+.+++...+. .++.+++.+.+++++++|++.+.+.++++
T Consensus 166 gi~~~i~~vv~-~~n~~~~~e~~~~~~~lg~~~~~~~p~~~ 205 (412)
T PRK13745 166 GVEWNAMAVVN-DFNADYPLDFYHFFKELDCHYIQFAPIVE 205 (412)
T ss_pred CCCEEEEEEEc-CCccccHHHHHHHHHHcCCCeEEEEeccC
Confidence 98766544432 78888899999999999999988875554
No 118
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=99.54 E-value=1.5e-12 Score=118.80 Aligned_cols=195 Identities=14% Similarity=0.204 Sum_probs=134.6
Q ss_pred eCcccCCCCcCcccCC-CCCCCCChhHHHHHHHHHHH------CCCcEEEEee-ecCCCCCCCChhHHHHHHHHHHhh-C
Q psy2895 67 MGSICTRRCKFCNISH-GRPDPLDIEEPKKIAYTINK------LKLNYVVITS-VNRDDLHDGGSSHFVSCIKHIRKL-S 137 (293)
Q Consensus 67 ~t~~C~~~C~fC~~~~-~~~~~~~~eei~~~~~~~~~------~G~~~i~l~g-g~~~~l~~~~~~~~~~ll~~i~~~-~ 137 (293)
.+.||+.+|.||.... +..+.++.+||++.+..+.. .+++.|++.| |+| +. +.+.+.+.++.+++. .
T Consensus 111 sQ~GC~l~C~fC~t~~~g~~r~lt~~Eiv~qv~~~~~~~~~~~~~v~nVvfmGmGEP--Ll--n~d~v~~~l~~l~~~~g 186 (355)
T TIGR00048 111 SQVGCALGCTFCATAKGGFNRNLEASEIIGQVLRVQKINNETGERVSNVVFMGMGEP--LL--NLNEVVKAMEIMNDDFG 186 (355)
T ss_pred cCCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCeeEEEEecCCch--hh--CHHHHHHHHHHhhcccc
Confidence 3589999999999876 33467899999987765432 2467899999 775 32 256788888888753 2
Q ss_pred CCc---EEEEEcCCCcCcHHHHHHHHHHcCCC-eeeecccc-chHHHhhcCC---CCCHHHHHHHHHHH-HHhCCCcee-
Q psy2895 138 TKI---KIEILIPDFRNQINHVLKIFKQALPD-VLNHNIET-VPRLYKKVRP---GSDYKHSLNLLKNF-KKLYPNILT- 207 (293)
Q Consensus 138 ~~~---~i~~~~~~~~~~~~e~l~~l~~aG~~-~i~~~les-s~~~~~~i~~---~~~~e~~l~~i~~~-~~~~pgi~~- 207 (293)
.++ ++.+.|+|+. ..+++|.+.+++ .+.+++.+ +++.++++.+ .++++++++.++.. ++. |..+
T Consensus 187 ~~i~~~~itisT~G~~----~~i~~l~~~~l~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~--g~~Vt 260 (355)
T TIGR00048 187 LGISKRRITISTSGVV----PKIDILADKMLQVALAISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKT--GRRVT 260 (355)
T ss_pred cCcCCCeEEEECCCch----HHHHHHHHhCCCcEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHh--CCEEE
Confidence 223 6777777755 357777777777 56788988 6899998864 46789999888765 445 6654
Q ss_pred -eEeEEeecCCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCccccccccChhHHHHHHHHHHHhcccc
Q psy2895 208 -KSGIMVGLGENDEEILTVIHDMRNHNIDILTIGQYLMPSRLHLPVHRYLHPKFFEKFKKIAYKLGFKN 275 (293)
Q Consensus 208 -~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~~a~~r~~~p~~~~~~~~~~~~~G~~~ 275 (293)
...+|-|+.++++++.++.++++.+++ .+.+-||. |.+.. -++-..++.+.++.+...+.|+..
T Consensus 261 ieyvLI~GvNDs~e~a~~La~llk~l~~-~VnLIPyn-p~~~~--~~~~ps~e~i~~f~~~L~~~gi~v 325 (355)
T TIGR00048 261 FEYVLLDGVNDQVEHAEELAELLKGTKC-KVNLIPWN-PFPEA--DYERPSNEQIDRFAKTLMSYGFTV 325 (355)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcCCC-ceEEEecc-cCCCC--CCCCCCHHHHHHHHHHHHHCCCeE
Confidence 455566889999999999999999864 33333332 32211 112245566778888877777754
No 119
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=99.54 E-value=8.2e-13 Score=119.99 Aligned_cols=171 Identities=18% Similarity=0.241 Sum_probs=126.3
Q ss_pred cccCC-CCcCcccCC---------CC-C--------CCCChhHHHHHHHHHHHCCCc----EEEEeeecCCCCCCCChhH
Q psy2895 69 SICTR-RCKFCNISH---------GR-P--------DPLDIEEPKKIAYTINKLKLN----YVVITSVNRDDLHDGGSSH 125 (293)
Q Consensus 69 ~~C~~-~C~fC~~~~---------~~-~--------~~~~~eei~~~~~~~~~~G~~----~i~l~gg~~~~l~~~~~~~ 125 (293)
.+||+ +|.||.... +. + +.=+-.++...++++...|.. ++.+-||.-+.++..-.++
T Consensus 75 ~~CPHg~CvfCpgg~~~~spQSytg~ep~~~R~~~~~ydpY~q~~~Rl~qL~~igh~~~KvEliimGGTFta~~~~yqe~ 154 (515)
T COG1243 75 HGCPHGRCVFCPGGPDKDSPQSYTGEEPAALRAIKNRYDPYEQVRARLKQLETIGHTSDKVELIIMGGTFTALSLEYQEW 154 (515)
T ss_pred CCCCCCeEEeCCCCCCCCCCcccCCCCchhhhHhhccCCcHHHHHHHHHHHHHcCCCcceEEEEEecccccCCCHHHHHH
Confidence 89998 999998651 11 1 112357788888999988764 5788888865543110122
Q ss_pred HHH-HHHHHH-------------h--hCCCcEEEEEc-CCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCC
Q psy2895 126 FVS-CIKHIR-------------K--LSTKIKIEILI-PDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSD 187 (293)
Q Consensus 126 ~~~-ll~~i~-------------~--~~~~~~i~~~~-~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~ 187 (293)
|.. +++++. + ...-+++++.| ||+.. ++.++.|...|++++-+|+|| .+++++..+|+|+
T Consensus 155 Fi~~~~~amn~f~~~le~a~~~ne~~~~r~vgitiETRPD~~~--ee~ld~mlkyG~TrVELGVQSiyd~Vl~~~~RGHt 232 (515)
T COG1243 155 FLKVALKAMNDFGYDLEEAQRKNETAELRCVGITIETRPDYID--EEHLDQMLKYGVTRVELGVQSIYDDVLERTKRGHT 232 (515)
T ss_pred HHHHHHHhhhccchhHHHHHHhhcccccceeEEEEecCccccC--HHHHHHHHhcCCcEEEEeeeeHHHHHHHHhcCCcc
Confidence 222 223333 0 11124688877 89888 899999999999999999999 6999999999999
Q ss_pred HHHHHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHHHHHhCC---CCEEEeecCC
Q psy2895 188 YKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHDMRNHN---IDILTIGQYL 243 (293)
Q Consensus 188 ~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~~l~~l~---~~~i~i~~~~ 243 (293)
.+++.++.+.++++ |+.++.++|.|+ |.+.+-=.++...+-+.+ +|.+-|+|.+
T Consensus 233 vedv~~a~rLlKd~--GfKv~~HiMpGLPgs~~erDl~~f~~~f~~p~f~PDmlKIYPtL 290 (515)
T COG1243 233 VEDVVEATRLLKDA--GFKVGYHIMPGLPGSDFERDLESFREIFEDPRFRPDMLKIYPTL 290 (515)
T ss_pred HHHHHHHHHHHHhc--CcEEEEEecCCCCCCChHHHHHHHHHHHhCCCCCCCeEEEeeeE
Confidence 99999999999999 999999999999 877765555555555544 9999887543
No 120
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.52 E-value=4e-12 Score=115.92 Aligned_cols=200 Identities=13% Similarity=0.164 Sum_probs=137.1
Q ss_pred eeeeCcccCCCCcCcccCC-CCCCCCChhHHHHHHHHH---H-HC--C---CcEEEEee-ecCCCCCCCChhHHHHHHHH
Q psy2895 64 FMIMGSICTRRCKFCNISH-GRPDPLDIEEPKKIAYTI---N-KL--K---LNYVVITS-VNRDDLHDGGSSHFVSCIKH 132 (293)
Q Consensus 64 ~~~~t~~C~~~C~fC~~~~-~~~~~~~~eei~~~~~~~---~-~~--G---~~~i~l~g-g~~~~l~~~~~~~~~~ll~~ 132 (293)
++..+.||+.+|.||.... +..+.++.+||++++... . +. | ++.|++.| |+| .+ +.+.+.+.++.
T Consensus 105 CvSsq~GC~~~C~FC~tg~~g~~rnlt~~EI~~qv~~~~~~~~~~g~g~~~i~nIvfmGmGEP-Ll---n~~~v~~~l~~ 180 (354)
T PRK14460 105 CLSCQVGCAMGCTFCSTGTMGFERNMTMGEILGQVLVAREHLGDNGPDHPILRNLVFMGMGEP-LL---NLDEVMRSLRT 180 (354)
T ss_pred EeeCCCCcCCCCccCCCCCCCCCcCCCHHHHHHHHHHHHHHHhhccCCCcceeEEEEecCCcc-cC---CHHHHHHHHHH
Confidence 3434689999999998654 345679999999998433 2 22 3 67889998 774 22 25677788887
Q ss_pred HHhhC----CCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCC---CCHHHHHHHHHHHHH-hCC
Q psy2895 133 IRKLS----TKIKIEILIPDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPG---SDYKHSLNLLKNFKK-LYP 203 (293)
Q Consensus 133 i~~~~----~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~---~~~e~~l~~i~~~~~-~~p 203 (293)
+++.. +..++.+.|+|+ .+.++.|.++|+..+.+++++ +++.++++.+. ++.++.++.++.... ...
T Consensus 181 l~~~~Gl~~~~r~itvsT~G~----~~~i~~L~~~~l~~L~iSLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~~ 256 (354)
T PRK14460 181 LNNEKGLNFSPRRITVSTCGI----EKGLRELGESGLAFLAVSLHAPNQELRERIMPKAARWPLDDLIAALKSYPLKTRE 256 (354)
T ss_pred HhhhhccCCCCCeEEEECCCC----hHHHHHHHhCCCcEEEEeCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhcCC
Confidence 76532 112577777765 346888999999889999999 79999998753 588888888775433 311
Q ss_pred CceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCccccccccChhHHHHHHHHHHHhcccc
Q psy2895 204 NILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIGQYLMPSRLHLPVHRYLHPKFFEKFKKIAYKLGFKN 275 (293)
Q Consensus 204 gi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~~a~~r~~~p~~~~~~~~~~~~~G~~~ 275 (293)
.+.+..-+|-|++++++|+.++.++++.++. .|.+-||. |..+. + ++-..++...++.+.....|+..
T Consensus 257 ~v~iey~LI~GvNDs~ed~~~l~~~l~~~~~-~VnLIpyn-~~~g~-~-y~~p~~e~v~~f~~~l~~~Gi~v 324 (354)
T PRK14460 257 RVTFEYLLLGGVNDSLEHARELVRLLSRTKC-KLNLIVYN-PAEGL-P-YSAPTEERILAFEKYLWSKGITA 324 (354)
T ss_pred eEEEEEEEECCCCCCHHHHHHHHHHHhcCCC-cEEEEcCC-CCCCC-C-CCCCCHHHHHHHHHHHHHCCCeE
Confidence 2345556677889999999999999999865 24443332 22221 1 23345566777888877777753
No 121
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.52 E-value=5e-13 Score=116.24 Aligned_cols=159 Identities=17% Similarity=0.234 Sum_probs=122.2
Q ss_pred CcccCCCCcCcccCCCC---CC----CCChhHHHHHHHHHHHCC--CcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCC
Q psy2895 68 GSICTRRCKFCNISHGR---PD----PLDIEEPKKIAYTINKLK--LNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLST 138 (293)
Q Consensus 68 t~~C~~~C~fC~~~~~~---~~----~~~~eei~~~~~~~~~~G--~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~ 138 (293)
+.||+.+|.||++..|. .+ ..++|.+++..+..++.. --+.+|-|+..|.+ ..++.++++.+++. +
T Consensus 114 ~tgCnlnCIfCSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~KgkglEaHlDGqGEP~l----YP~l~~lVqalk~~-~ 188 (414)
T COG2100 114 STGCNLNCIFCSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFKGKGLEAHLDGQGEPLL----YPHLVDLVQALKEH-K 188 (414)
T ss_pred CccccceeEEEeccCCcccceeccceEecHHHHHHHHHHHHhhhCCCeEEEecCCCCCcc----chhHHHHHHHHhcC-C
Confidence 68999999999997652 12 367999999888887652 23678888776544 35899999999986 4
Q ss_pred CcE-EEEEcC-CCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCC--CCCHHHHHHHHHHHHHhCCCceeeEeEEe
Q psy2895 139 KIK-IEILIP-DFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRP--GSDYKHSLNLLKNFKKLYPNILTKSGIMV 213 (293)
Q Consensus 139 ~~~-i~~~~~-~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~--~~~~e~~l~~i~~~~~~~pgi~~~~~~iv 213 (293)
+.. +++-|+ .+++ ++.+++|.+||+|++++++++ .+++-+.+.. .++.+.+++..+.+.+. |+.+-..=+.
T Consensus 189 ~v~vVSmQTng~~L~--~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a--~idvlIaPv~ 264 (414)
T COG2100 189 GVEVVSMQTNGVLLS--KKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANA--GIDVLIAPVW 264 (414)
T ss_pred CceEEEEeeCceecc--HHHHHHHHHhCCceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHhC--CCCEEEeeee
Confidence 443 444555 4556 899999999999999999999 6788777763 67999999999999998 8854322111
Q ss_pred ecCCCHHHHHHHHHHHHhCCCC
Q psy2895 214 GLGENDEEILTVIHDMRNHNID 235 (293)
Q Consensus 214 G~gEt~ed~~~~l~~l~~l~~~ 235 (293)
=.|-+++|+...+++++++|..
T Consensus 265 lPG~ND~E~~~iIe~A~~iGaG 286 (414)
T COG2100 265 LPGVNDDEMPKIIEWAREIGAG 286 (414)
T ss_pred cCCcChHHHHHHHHHHHHhCCC
Confidence 1277889999999999999854
No 122
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=99.51 E-value=2.8e-12 Score=115.75 Aligned_cols=187 Identities=18% Similarity=0.189 Sum_probs=131.7
Q ss_pred cccCCCCcCcccCCCCC--------CCCChhHHHHHHHHHHH---C---C--------------CcEEEEe-eecCCCCC
Q psy2895 69 SICTRRCKFCNISHGRP--------DPLDIEEPKKIAYTINK---L---K--------------LNYVVIT-SVNRDDLH 119 (293)
Q Consensus 69 ~~C~~~C~fC~~~~~~~--------~~~~~eei~~~~~~~~~---~---G--------------~~~i~l~-gg~~~~l~ 119 (293)
.||+++|.||..+.... ...++++|++.+..... . | .+.+.|+ +|+ |.+
T Consensus 66 ~~C~~rC~fC~r~~~~~~~~~~~~~~~~~peeiv~~~~~~~~~~i~g~~g~~~v~~~~~~ea~~~~~v~iSl~GE-PlL- 143 (322)
T PRK13762 66 AWCNQRCLFCWRPLEEDVGLELKEPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDREKFEEAMEPKHVAISLSGE-PTL- 143 (322)
T ss_pred HHHhccCceeeccCCCCcccccCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCHHHhhhccCCCEEEEeCCcc-ccc-
Confidence 67999999999865322 35679999988866522 1 2 3467787 455 434
Q ss_pred CCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCC---CCCHHHHHHHH
Q psy2895 120 DGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRP---GSDYKHSLNLL 195 (293)
Q Consensus 120 ~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~---~~~~e~~l~~i 195 (293)
.+++.++++.+++. ++.+.+.|+|+. .+.++.| +++++.+.+++++ +++.|+++++ +.+++.+++.+
T Consensus 144 ---~p~l~eli~~~k~~--Gi~~~L~TNG~~---~e~l~~L-~~~~d~i~VSLda~~~e~~~~i~~~~~~~~~~~vl~~L 214 (322)
T PRK13762 144 ---YPYLPELIEEFHKR--GFTTFLVTNGTR---PDVLEKL-EEEPTQLYVSLDAPDEETYKKINRPVIPDAWERILETL 214 (322)
T ss_pred ---hhhHHHHHHHHHHc--CCCEEEECCCCC---HHHHHHH-HhcCCEEEEEccCCCHHHHHHHhCCCCCCcHHHHHHHH
Confidence 24789999999987 456777787755 5788888 6799999999999 6899999975 35899999999
Q ss_pred HHHHHhCCCceee--EeEEeecCCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCc---cccccccChhHHHHHHHHHHH
Q psy2895 196 KNFKKLYPNILTK--SGIMVGLGENDEEILTVIHDMRNHNIDILTIGQYLMPSRLH---LPVHRYLHPKFFEKFKKIAYK 270 (293)
Q Consensus 196 ~~~~~~~pgi~~~--~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~---~a~~r~~~p~~~~~~~~~~~~ 270 (293)
+.+++. |..+. +.++-| .|..+..+.++++++++++.+.+.+|. |.+.. ......+.++++..+.+...+
T Consensus 215 ~~l~~~--~~~~~ir~tlv~g--~Nd~e~~~~a~l~~~~~~~~Iel~~y~-~~G~~k~~l~~~~~p~~eev~~~~~~l~~ 289 (322)
T PRK13762 215 ELLPSK--KTRTVIRITLVKG--YNMHDPEGFAKLIERANPDFVEVKAYM-HVGYSRNRLTRDNMPSHEEVREFAKELAE 289 (322)
T ss_pred HHHHhC--CCCEEEEEEEECC--cCccHHHHHHHHHHHcCCCEEEEECCe-ECCCccccccccCCcCHHHHHHHHHHHHH
Confidence 999998 77544 444444 444455588899999999999886553 32211 111122455667777666665
Q ss_pred h
Q psy2895 271 L 271 (293)
Q Consensus 271 ~ 271 (293)
.
T Consensus 290 ~ 290 (322)
T PRK13762 290 Y 290 (322)
T ss_pred h
Confidence 4
No 123
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=99.50 E-value=2.8e-12 Score=112.42 Aligned_cols=167 Identities=17% Similarity=0.297 Sum_probs=130.1
Q ss_pred cccCCCCcCcccCCC------CCCCCChhHHHHHHHHHHHC------CCcEEEEeeecCCCCCCCChhHHHHHHHHHHhh
Q psy2895 69 SICTRRCKFCNISHG------RPDPLDIEEPKKIAYTINKL------KLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKL 136 (293)
Q Consensus 69 ~~C~~~C~fC~~~~~------~~~~~~~eei~~~~~~~~~~------G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~ 136 (293)
..|+++|.||..... ++..+..+.|.+..+.+... ..+.+.|++...|.|. .++.++++.+++.
T Consensus 32 ~~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~~GEPTLy----~~L~elI~~~k~~ 107 (296)
T COG0731 32 KWCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTISLSGEPTLY----PNLGELIEEIKKR 107 (296)
T ss_pred hhhcCCCeEEecccCCCCCCCCCceecHHHHHHHHHHHhcccccccCCCCEEEEeCCCCcccc----cCHHHHHHHHHhc
Confidence 489999999998431 23468899999998888765 4578888775556663 5789999999997
Q ss_pred CCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCC---CHHHHHHHHHHHHHh-CCCceeeEeE
Q psy2895 137 STKIKIEILIPDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGS---DYKHSLNLLKNFKKL-YPNILTKSGI 211 (293)
Q Consensus 137 ~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~---~~e~~l~~i~~~~~~-~pgi~~~~~~ 211 (293)
+. ..+-+.|++.+ +++++.|. -+|.+.+++++ .++.|++++|++ .++.+++.++.+++. ..-..+.+.+
T Consensus 108 g~-~~tflvTNgsl---pdv~~~L~--~~dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L~~~~~~~~~~~vir~tl 181 (296)
T COG0731 108 GK-KTTFLVTNGSL---PDVLEELK--LPDQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLEIFRSEYKGRTVIRTTL 181 (296)
T ss_pred CC-ceEEEEeCCCh---HHHHHHhc--cCCEEEEEeccCCHHHHHHhcCCCCcchHHHHHHHHHHhhhcCCCcEEEEEEE
Confidence 42 34445566555 67888886 58899999999 799999999753 799999999999885 3233455666
Q ss_pred EeecCCCHHHHHHHHHHHHhCCCCEEEeecCCCC
Q psy2895 212 MVGLGENDEEILTVIHDMRNHNIDILTIGQYLMP 245 (293)
Q Consensus 212 ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p 245 (293)
+=|+..+.+++.+..++++.+++++|.++.+..|
T Consensus 182 vkg~N~~~e~~~~~a~ll~~~~Pd~velk~~~rp 215 (296)
T COG0731 182 VKGINDDEEELEEYAELLERINPDFVELKTYMRP 215 (296)
T ss_pred eccccCChHHHHHHHHHHHhcCCCeEEEecCccC
Confidence 6678888899999999999999999999866655
No 124
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.49 E-value=1.1e-11 Score=112.52 Aligned_cols=197 Identities=14% Similarity=0.181 Sum_probs=136.4
Q ss_pred eeeeCcccCCCCcCcccCC-CCCCCCChhHHHHHHHHHHHC---CCcEEEEee-ecCCCCCCCChhHHHHHHHHHHhhCC
Q psy2895 64 FMIMGSICTRRCKFCNISH-GRPDPLDIEEPKKIAYTINKL---KLNYVVITS-VNRDDLHDGGSSHFVSCIKHIRKLST 138 (293)
Q Consensus 64 ~~~~t~~C~~~C~fC~~~~-~~~~~~~~eei~~~~~~~~~~---G~~~i~l~g-g~~~~l~~~~~~~~~~ll~~i~~~~~ 138 (293)
++..+-||+.+|.||.... +..+.++.+||++++..+... ++..|++.| |+| +. +.+.+.+.++.+++..
T Consensus 104 cvSsqvGC~~~C~FC~tg~~g~~rnlt~~EIv~qv~~~~~~~~~~~~~IvfmGmGEP--ll--n~~~v~~~i~~l~~~~- 178 (345)
T PRK14457 104 CVSSQVGCPMACDFCATGKGGLKRSLKAHEIVDQVLTVQEDMQRRVSHVVFMGMGEP--LL--NIDEVLAAIRCLNQDL- 178 (345)
T ss_pred EEeCCCCCCCcCCcCCCCCCCCccccCHHHHHHHHHHHHHHhcCCCCEEEEEecCcc--cc--CHHHHHHHHHHHhccc-
Confidence 3333479999999998765 344568999999998876543 578999999 885 32 2566777777776532
Q ss_pred Cc---EEEEEcCCCcCcHHHHHHHHHHcC------CC-eeeecccc-chHHHhhcCC---CCCHHHHHHHHHH-HHHhCC
Q psy2895 139 KI---KIEILIPDFRNQINHVLKIFKQAL------PD-VLNHNIET-VPRLYKKVRP---GSDYKHSLNLLKN-FKKLYP 203 (293)
Q Consensus 139 ~~---~i~~~~~~~~~~~~e~l~~l~~aG------~~-~i~~~les-s~~~~~~i~~---~~~~e~~l~~i~~-~~~~~p 203 (293)
++ ++++.|.|.. +.++.|.+.+ .+ .+.+++.+ .++.++++.| .++.++.++.++. +.+.
T Consensus 179 ~i~~r~itvST~G~~----~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~-- 252 (345)
T PRK14457 179 GIGQRRITVSTVGVP----KTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAIT-- 252 (345)
T ss_pred CCccCceEEECCCch----hhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHh--
Confidence 33 6777665644 3567776665 23 46788888 6999999865 4578888877765 4555
Q ss_pred Cc--eeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCccccccccChhHHHHHHHHHHHhcccc
Q psy2895 204 NI--LTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIGQYLMPSRLHLPVHRYLHPKFFEKFKKIAYKLGFKN 275 (293)
Q Consensus 204 gi--~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~~a~~r~~~p~~~~~~~~~~~~~G~~~ 275 (293)
|- .+..-+|-|+.++++++.++.++++.++. .|.+-||- |.+. .-++-..++...++.+.++..|+..
T Consensus 253 gr~I~iey~LIpGvNDs~e~a~~La~~l~~l~~-~VnLIPyn-p~~~--~~~~~ps~e~i~~f~~~L~~~Gi~v 322 (345)
T PRK14457 253 GRRVSFEYILLGGVNDLPEHAEELANLLRGFQS-HVNLIPYN-PIDE--VEFQRPSPKRIQAFQRVLEQRGVAV 322 (345)
T ss_pred CCEEEEEEEEECCcCCCHHHHHHHHHHHhcCCC-eEEEecCC-CCCC--CCCCCCCHHHHHHHHHHHHHCCCeE
Confidence 54 45567788999999999999999999865 45554443 3221 1122245566778888888778754
No 125
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.49 E-value=9e-12 Score=113.13 Aligned_cols=200 Identities=15% Similarity=0.210 Sum_probs=134.8
Q ss_pred EeeeeCcccCCCCcCcccCC-CCCCCCChhHHHHHHHHHHH----CCCcEEEEee-ecCCCCCCCChhHHHHHHHHHHhh
Q psy2895 63 TFMIMGSICTRRCKFCNISH-GRPDPLDIEEPKKIAYTINK----LKLNYVVITS-VNRDDLHDGGSSHFVSCIKHIRKL 136 (293)
Q Consensus 63 ~~~~~t~~C~~~C~fC~~~~-~~~~~~~~eei~~~~~~~~~----~G~~~i~l~g-g~~~~l~~~~~~~~~~ll~~i~~~ 136 (293)
.++..+.||+.+|.||..+. |..+.++.+||++.+..+.. .++..|++.| |+| +. +.+.+.+.++.+++.
T Consensus 101 ~cvSsq~GC~l~C~FC~t~~~G~~rnlt~~EIv~Qv~~~~~~~~~~~v~~VvfmGmGEP--L~--N~d~v~~~l~~l~~~ 176 (348)
T PRK14467 101 LCVSSQVGCAVGCKFCATAKDGLIRNLRTAEIIDQYIQVQKFLGENRIRNVVFMGMGEP--LA--NYENVRKAVQIMTSP 176 (348)
T ss_pred EEEEcCCCCCCcCcCCCCCCCCCcCCCCHHHHHHHHHHHHHHhccCCCCeEEEEccChh--hc--CHHHHHHHHHHHcCh
Confidence 44555799999999999876 44467999999988876654 2578999999 885 32 367888888888753
Q ss_pred CCCc-----EEEEEcCCCcCcHHHHHHHHHHc----CCCeeeecccc-chHHHhhcCCC---CCHHHHHHHHHHHH-HhC
Q psy2895 137 STKI-----KIEILIPDFRNQINHVLKIFKQA----LPDVLNHNIET-VPRLYKKVRPG---SDYKHSLNLLKNFK-KLY 202 (293)
Q Consensus 137 ~~~~-----~i~~~~~~~~~~~~e~l~~l~~a----G~~~i~~~les-s~~~~~~i~~~---~~~e~~l~~i~~~~-~~~ 202 (293)
. ++ ++++.|+|+.. .+.++... .++ +.+++.+ .++.++++.|. ++.++.++.++... +..
T Consensus 177 ~-gl~~~~r~itvsT~G~~~----~i~~l~~~~~l~~v~-LalSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~~~~~~g 250 (348)
T PRK14467 177 W-GLDLSKRRITISTSGIIH----QIKRMAEDPVMPEVN-LAVSLNASSQKLRERIMPISKTNTLEELMEVLKQYPLPPG 250 (348)
T ss_pred h-ccCcCCCcEEEECCCChh----HHHHHHhhccccCee-EEEECCCCCHHHHHHhcCCccccCHHHHHHHHHHHHHhcC
Confidence 2 23 67888877664 23343332 233 4478888 69999998863 47787777776544 331
Q ss_pred CCceeeEeEEeecCCCHHHHHHHHHHHHhCC-CCEEEeecCCCCCCCccccccccChhHHHHHHHHHHHhcccc
Q psy2895 203 PNILTKSGIMVGLGENDEEILTVIHDMRNHN-IDILTIGQYLMPSRLHLPVHRYLHPKFFEKFKKIAYKLGFKN 275 (293)
Q Consensus 203 pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~-~~~i~i~~~~~p~~~~~a~~r~~~p~~~~~~~~~~~~~G~~~ 275 (293)
..+.+..-+|-|+.++++++.++.++++.++ ...+.+-||- |.+.. -++-..++...++.+...+.|+..
T Consensus 251 ~~V~ieyvLIpGvNDs~e~a~~La~~l~~l~~~~~VnLIPyn-p~~~~--~~~~ps~e~i~~f~~~L~~~gi~v 321 (348)
T PRK14467 251 RRIMLEYVLIKGVNDSPEDALRLAQLIGKNKKKFKVNLIPFN-PDPEL--PYERPELERVYKFQKILWDNGIST 321 (348)
T ss_pred CeEEEEEEEECCccCCHHHHHHHHHHHhcCCCceEEEEecCC-CCCCC--CCCCCCHHHHHHHHHHHHHCCCcE
Confidence 1234455667788999999999999999884 4455554442 32211 122234566777877777777753
No 126
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=99.49 E-value=3.2e-12 Score=115.32 Aligned_cols=186 Identities=10% Similarity=0.149 Sum_probs=126.0
Q ss_pred eeeCcccCCCCcCcccCCCC--CCCCChhHHHHHHHHHHHC-CCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcE
Q psy2895 65 MIMGSICTRRCKFCNISHGR--PDPLDIEEPKKIAYTINKL-KLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIK 141 (293)
Q Consensus 65 ~~~t~~C~~~C~fC~~~~~~--~~~~~~eei~~~~~~~~~~-G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~ 141 (293)
+.+|++||.+|.||...... ...++.+++.+.++.+.+. |++.|+|+||+| +... ...+.++++.+.....-..
T Consensus 100 ~~~t~~Cn~~Cr~C~~~~~~~~~~~~~~~~~~~~i~~i~~~~~i~~VvltGGEP--L~~~-d~~L~~ll~~l~~i~~~~~ 176 (321)
T TIGR03821 100 LIVTGGCAINCRYCFRRHFPYQENQPNKAQWKEALEYIAQHPEINEVILSGGDP--LMAK-DHRLDWLLNLLEQIPHLKR 176 (321)
T ss_pred EEeCCCcCCcCcCCCCCCcCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCccc--ccCC-chHHHHHHHHHHhCCCCcE
Confidence 34799999999999875432 2346677777777777654 899999999996 3211 2346677766665321113
Q ss_pred EEEEc------CCCcCcHHHHHHHHHHcCCCeee-eccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEe--EE
Q psy2895 142 IEILI------PDFRNQINHVLKIFKQALPDVLN-HNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSG--IM 212 (293)
Q Consensus 142 i~~~~------~~~~~~~~e~l~~l~~aG~~~i~-~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~--~i 212 (293)
+++.+ |..++ ++.++.|+++|...+. +++++.++++ +...++++.++++ |+.+... ++
T Consensus 177 iri~tr~~~~~p~rit--~el~~~L~~~~~~~~~~~h~dh~~Ei~---------d~~~~ai~~L~~~--Gi~v~~qtvll 243 (321)
T TIGR03821 177 LRIHTRLPVVIPDRIT--SGLCDLLANSRLQTVLVVHINHANEID---------AEVADALAKLRNA--GITLLNQSVLL 243 (321)
T ss_pred EEEecCcceeeHHHhh--HHHHHHHHhcCCcEEEEeeCCChHhCc---------HHHHHHHHHHHHc--CCEEEecceee
Confidence 44332 23344 7899999999987764 4676654554 3477799999999 9975533 44
Q ss_pred eecCCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCccccccccChhHHHHHHHHHH
Q psy2895 213 VGLGENDEEILTVIHDMRNHNIDILTIGQYLMPSRLHLPVHRYLHPKFFEKFKKIAY 269 (293)
Q Consensus 213 vG~gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~~a~~r~~~p~~~~~~~~~~~ 269 (293)
-|+.++.+++.++.+.+.++|+.-..++ .+.|.++.- -. .+.+++..++.+.++
T Consensus 244 kgiNDn~~~l~~L~~~l~~~gv~pyyl~-~~~p~gg~~-~f-~v~~~~~~~i~~~l~ 297 (321)
T TIGR03821 244 RGVNDNADTLAALSERLFDAGVLPYYLH-LLDKVQGAA-HF-DVDDERARALMAELL 297 (321)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCeeCccc-ccCCCCCcc-cc-cCCHHHHHHHHHHHH
Confidence 4678999999999999999999888886 556766532 12 245555555554444
No 127
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=99.48 E-value=8.2e-12 Score=113.26 Aligned_cols=169 Identities=11% Similarity=0.159 Sum_probs=121.5
Q ss_pred eeeeCcccCCCCcCcccCCCCC--CCCChhHHHHHHHHHHH-CCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCc
Q psy2895 64 FMIMGSICTRRCKFCNISHGRP--DPLDIEEPKKIAYTINK-LKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKI 140 (293)
Q Consensus 64 ~~~~t~~C~~~C~fC~~~~~~~--~~~~~eei~~~~~~~~~-~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~ 140 (293)
++.+|++||.+|.||..+.... ...+.+++.+.++.+.+ .|+++|.|+||++-.++ ...+.++++.+++.....
T Consensus 116 ll~~T~gCn~~C~yC~~~~~~~~~~~~~~~~~~~~i~~i~~~~~i~eV~lsGGDPLl~~---d~~L~~ll~~L~~i~~~~ 192 (331)
T TIGR00238 116 LFLVKGGCAVNCRYCFRRHFPYKENPGNKKKWQKALDYIAEHPEIIEILISGGDPLMAK---DHELEWLLKRLEEIPHLV 192 (331)
T ss_pred EEEeCCCCCCCCcCCCCCCcCCCCCCccHHHHHHHHHHHHhCCCcCEEEEECCccccCC---HHHHHHHHHHHHhcCCcc
Confidence 4557999999999999754321 12236778887777765 48999999999962221 235888888888742122
Q ss_pred EEEEEc--CCC----cCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceee--EeE
Q psy2895 141 KIEILI--PDF----RNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTK--SGI 211 (293)
Q Consensus 141 ~i~~~~--~~~----~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~--~~~ 211 (293)
++++.+ |++ ++ ++.++.|+++|+..+.++... .+++ .++..++++.++++ |+.+. +.+
T Consensus 193 ~IRi~tr~~~~~P~rit--~el~~~L~~~~~~~~~vsh~nh~~Ei---------~~~~~~ai~~L~~a--Gi~v~~qtvL 259 (331)
T TIGR00238 193 RLRIGTRLPVVIPQRIT--DELCELLASFELQLMLVTHINHCNEI---------TEEFAEAMKKLRTV--NVTLLNQSVL 259 (331)
T ss_pred EEEeecCCCccCchhcC--HHHHHHHHhcCCcEEEEccCCChHhC---------CHHHHHHHHHHHHc--CCEEEeecce
Confidence 566654 332 34 789999999998887776554 3332 26678999999999 99654 555
Q ss_pred EeecCCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCc
Q psy2895 212 MVGLGENDEEILTVIHDMRNHNIDILTIGQYLMPSRLH 249 (293)
Q Consensus 212 ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~ 249 (293)
+-|..++.+++.++.+.+.++|+.-.+++ .+.|..+.
T Consensus 260 l~gvnD~~~~l~~L~~~l~~~gV~pyyl~-~~~~~~g~ 296 (331)
T TIGR00238 260 LRGVNDRAQILAKLSIALFKVGIIPYYLH-YLDKVQGA 296 (331)
T ss_pred ECCcCCCHHHHHHHHHHHhhcCeecCeec-CcCCCCCc
Confidence 66778999999999999999999877776 55666654
No 128
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=99.42 E-value=6.2e-11 Score=107.72 Aligned_cols=203 Identities=12% Similarity=0.147 Sum_probs=132.3
Q ss_pred eEeeeeCcccCCCCcCcccCC-CCCCCCChhHHHHHHHHHHHCC--CcEEEEee-ecCCCCCCCChhHHHHHHHHHHhh-
Q psy2895 62 ATFMIMGSICTRRCKFCNISH-GRPDPLDIEEPKKIAYTINKLK--LNYVVITS-VNRDDLHDGGSSHFVSCIKHIRKL- 136 (293)
Q Consensus 62 ~~~~~~t~~C~~~C~fC~~~~-~~~~~~~~eei~~~~~~~~~~G--~~~i~l~g-g~~~~l~~~~~~~~~~ll~~i~~~- 136 (293)
..++..+-||+.+|.||.... +..+.++.+||++.+..+...| ++.|+++| |+| +.. ..+.+.++.+++.
T Consensus 101 t~CvssqvGC~~~C~FC~tg~~g~~rnLt~~EIv~qv~~~~~~~~~i~~IvfmGmGEP--Lln---~~v~~~i~~l~~~~ 175 (347)
T PRK14453 101 SFCISSQCGCGFGCRFCATGSIGLKRNLTADEITDQLLYFYLNGHRLDSISFMGMGEA--LAN---PELFDALKILTDPN 175 (347)
T ss_pred eEEEecCCCcCCCCCCCCCCCCCCcccCCHHHHHHHHHHHHhcCCCcceEEEeecCCc--cCC---HHHHHHHHHHhccc
Confidence 344444689999999999876 3456799999999988776555 78999999 885 322 3577777777652
Q ss_pred CCCc---EEEEEcCCCcCcHHHHHHHHHHcC-CCeeeecccc-chHHHhhcCC---CCCHHHHHHHHHHHHH-hCCCcee
Q psy2895 137 STKI---KIEILIPDFRNQINHVLKIFKQAL-PDVLNHNIET-VPRLYKKVRP---GSDYKHSLNLLKNFKK-LYPNILT 207 (293)
Q Consensus 137 ~~~~---~i~~~~~~~~~~~~e~l~~l~~aG-~~~i~~~les-s~~~~~~i~~---~~~~e~~l~~i~~~~~-~~pgi~~ 207 (293)
..++ ++.+.|.|+... ++.|.+.. --.+.+++.+ .++.++++.+ .+..++.++.++...+ ....+.+
T Consensus 176 ~~~~~~r~itVsT~G~~~~----i~~l~~~~~~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~~V~i 251 (347)
T PRK14453 176 LFGLSQRRITISTIGIIPG----IQRLTQEFPQVNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGRKVYI 251 (347)
T ss_pred ccCCCCCcEEEECCCCchh----HHHHHhhccCcCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEE
Confidence 1122 477777776532 33333321 1224457777 5777777664 4577777777666544 3112356
Q ss_pred eEeEEeecCCCHHHHHHHHHHHHhCC----CCEEEeecCCCCCCCccccccccChhHHHHHHHHHHHhccc
Q psy2895 208 KSGIMVGLGENDEEILTVIHDMRNHN----IDILTIGQYLMPSRLHLPVHRYLHPKFFEKFKKIAYKLGFK 274 (293)
Q Consensus 208 ~~~~ivG~gEt~ed~~~~l~~l~~l~----~~~i~i~~~~~p~~~~~a~~r~~~p~~~~~~~~~~~~~G~~ 274 (293)
..-+|-|+.++.+|+.+++++++.++ +..+.+-||. |.+....-++-...+....+.+...+.|+.
T Consensus 252 ry~LI~GvNDs~e~a~~L~~~lk~l~~~~~~~~VnLIPyn-~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~ 321 (347)
T PRK14453 252 AYIMLEGVNDSKEHAEAVVGLLRNRGSWEHLYHVNLIPYN-STDKTPFKFQSSSAGQIKQFCSTLKSAGIS 321 (347)
T ss_pred EEEeECCCCCCHHHHHHHHHHHhhccccCCcceEEEecCC-CCCCCCccCCCCCHHHHHHHHHHHHHCCCc
Confidence 66778899999999999999999873 3445554442 333211112334456678888888888875
No 129
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=99.41 E-value=6.5e-11 Score=109.42 Aligned_cols=164 Identities=15% Similarity=0.186 Sum_probs=124.1
Q ss_pred ccc---CCCCcCcccCCC--CCCCCChhHHHHHHHHHHHC---CCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCc
Q psy2895 69 SIC---TRRCKFCNISHG--RPDPLDIEEPKKIAYTINKL---KLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKI 140 (293)
Q Consensus 69 ~~C---~~~C~fC~~~~~--~~~~~~~eei~~~~~~~~~~---G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~ 140 (293)
..| +..|.||..... ....++++++++++.+.... ....|.++||++|.. .+.+.++++.+++.. +
T Consensus 30 ~~C~~~~~~C~yC~~~~~e~~g~~~t~~evl~ev~~d~~~~~~~~ggVtisGGGepl~----~~~l~eLl~~lk~~g--i 103 (404)
T TIGR03278 30 KNCPPGTKGCDYCTRSVWEINGDFIPPQVVLGEVQTSLGFRTGRDTKVTISGGGDVSC----YPELEELTKGLSDLG--L 103 (404)
T ss_pred CcCCCCCCCCCCCCchhhhhcCCcCCHHHHHHHHHHHHHHhcCCCCEEEEECCccccc----CHHHHHHHHHHHhCC--C
Confidence 567 348888855432 23578999999999887653 346789999986543 368999999999863 4
Q ss_pred EEEEE-cC--CCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecC
Q psy2895 141 KIEIL-IP--DFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLG 216 (293)
Q Consensus 141 ~i~~~-~~--~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~g 216 (293)
++.+. |+ ++.+ .+.+++++++|++.+.+++++ ++++++++....+.+.+++.++.+.+. ..+.+.+-++-|++
T Consensus 104 ~taI~~TnG~~l~~--~e~~~~L~~~gld~v~iSvka~dpe~h~kl~G~~~a~~ILe~L~~L~e~-~~v~~~ivlIPGiN 180 (404)
T TIGR03278 104 PIHLGYTSGKGFDD--PEIAEFLIDNGVREVSFTVFATDPELRREWMKDPTPEASLQCLRRFCES-CEVHAASVIIPGVN 180 (404)
T ss_pred CEEEeCCCCcccCC--HHHHHHHHHcCCCEEEEecccCCHHHHHHHhCCCCHHHHHHHHHHHHhc-CCEEEEEEEeCCcc
Confidence 55553 66 3445 889999999999999999999 699999987554568999999999875 23345566666776
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEeecC
Q psy2895 217 ENDEEILTVIHDMRNHNIDILTIGQY 242 (293)
Q Consensus 217 Et~ed~~~~l~~l~~l~~~~i~i~~~ 242 (293)
++++. .++++++.++++..+.+.+|
T Consensus 181 D~eel-~~ti~~L~~lg~~~V~L~~y 205 (404)
T TIGR03278 181 DGDVL-WKTCADLESWGAKALILMRF 205 (404)
T ss_pred CcHHH-HHHHHHHHHCCCCEEEEEec
Confidence 66555 59999999999998888755
No 130
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=99.39 E-value=4.5e-11 Score=109.67 Aligned_cols=167 Identities=10% Similarity=0.090 Sum_probs=123.5
Q ss_pred Ccc-cCCCCcCcccCCCCC--CCCChhHHHHHHHHHHHC-CCcE--EEEeeecCCCCCCCChhHHHHHHHHHHhhCC-Cc
Q psy2895 68 GSI-CTRRCKFCNISHGRP--DPLDIEEPKKIAYTINKL-KLNY--VVITSVNRDDLHDGGSSHFVSCIKHIRKLST-KI 140 (293)
Q Consensus 68 t~~-C~~~C~fC~~~~~~~--~~~~~eei~~~~~~~~~~-G~~~--i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~-~~ 140 (293)
|.. ||.+|.||..+.... +.||.|-+.+.++.+.+. +.+. +.+.||+| .+. ...+.+.+..+.+++. +.
T Consensus 14 t~~~CNL~C~YC~~~~~~~~~~~Ms~etle~~i~~~~~~~~~~~v~~~w~GGEP-lL~---~~~f~~~~~~l~~k~~~~~ 89 (378)
T COG0641 14 TGFECNLDCKYCFYLEKESLQRIMSDETLEEYVRQYIAASNGDKVTFTWQGGEP-LLA---GLDFYRKAVALQQKYANGK 89 (378)
T ss_pred ccCccCCCCCeeCcccCCCCCCCCCHHHHHHHHHHHHhhCCCCeeEEEEECCcc-ccc---hHHHHHHHHHHHHHHhcCC
Confidence 444 999999999987432 358888888888888765 4455 78899996 332 2344444444333322 44
Q ss_pred EEE--EEcCC-CcCcHHHHHHHHHHcCCCeeeeccccchHHHhhcC----CCCCHHHHHHHHHHHHHhCCCceeeEeEEe
Q psy2895 141 KIE--ILIPD-FRNQINHVLKIFKQALPDVLNHNIETVPRLYKKVR----PGSDYKHSLNLLKNFKKLYPNILTKSGIMV 213 (293)
Q Consensus 141 ~i~--~~~~~-~~~~~~e~l~~l~~aG~~~i~~~less~~~~~~i~----~~~~~e~~l~~i~~~~~~~pgi~~~~~~iv 213 (293)
.+. +.|++ +++ ++.++.|++.++ .|.+++++.++++++.| ...+++.+++.++.+++. ++.+++.+.|
T Consensus 90 ~i~~siqTNg~LL~--~e~~e~l~~~~~-~IgISiDGp~eihD~~R~~~~GkgTfd~i~~~i~~L~~~--~v~~~~~~vv 164 (378)
T COG0641 90 TISNALQTNGTLLN--DEWAEFLAEHDF-LIGISIDGPEEIHDKYRVTKSGKGTFDRVMKGLELLQAH--GVDFNTLTVV 164 (378)
T ss_pred eeEEEEEEcccccC--HHHHHHHHhcCc-eEEEeccCchHhccccccCCCCCccHHHHHHHHHHHHHc--CCcEEEEEEE
Confidence 455 45665 455 899999999999 89999999899999888 245999999999999998 9887766653
Q ss_pred ecCCCHHHHHHHHHHHHhCCCCEEEeecCCC
Q psy2895 214 GLGENDEEILTVIHDMRNHNIDILTIGQYLM 244 (293)
Q Consensus 214 G~gEt~ed~~~~l~~l~~l~~~~i~i~~~~~ 244 (293)
. .++.++..+.++++.+.+...+.+.|.+.
T Consensus 165 ~-~~n~~~~~ei~~~l~~~g~~~i~fip~~~ 194 (378)
T COG0641 165 N-RQNVLHPEEIYHFLKSEGSKFIQFIPLVE 194 (378)
T ss_pred c-hhHhhCHHHHHHHHHHcccceEEEEeccc
Confidence 2 88999999999999999977776644433
No 131
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=99.38 E-value=9.4e-12 Score=108.60 Aligned_cols=159 Identities=18% Similarity=0.267 Sum_probs=114.3
Q ss_pred eeeeCcccCCCCcCcccCCCC---C----CC---CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHH
Q psy2895 64 FMIMGSICTRRCKFCNISHGR---P----DP---LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHI 133 (293)
Q Consensus 64 ~~~~t~~C~~~C~fC~~~~~~---~----~~---~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i 133 (293)
.+.+|+.||.+|.||..+..+ . .. -+.++|.+++....+ ..+-+|||+| +. ..++..+.++.+
T Consensus 31 VlFvTG~C~~~CfYCPvs~~r~gkdviyaNErpV~~~eDii~ea~~~~a---~GasiTGGdP--l~--~ieR~~~~ir~L 103 (353)
T COG2108 31 VLFVTGLCNRSCFYCPVSDERKGKDVIYANERPVKSVEDIIEEAKLMDA---LGASITGGDP--LL--EIERTVEYIRLL 103 (353)
T ss_pred EEEEecccCCCcccCcCCHHhcCCcceeecccccCcHHHHHHHHHHhcc---ccccccCCCh--HH--HHHHHHHHHHHH
Confidence 334599999999999998632 1 22 345666666555444 4455899996 31 267888999999
Q ss_pred HhhC-CCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEE
Q psy2895 134 RKLS-TKIKIEILIPDFRNQINHVLKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIM 212 (293)
Q Consensus 134 ~~~~-~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~i 212 (293)
|+.+ .+++++++|++...+ ++.++.|.+||+|-+.+.... -.....+.+++.++.+++. |+.++.- |
T Consensus 104 K~efG~~fHiHLYT~g~~~~-~e~l~~L~eAGLDEIRfHp~~--------~~~~~~e~~i~~l~~A~~~--g~dvG~E-i 171 (353)
T COG2108 104 KDEFGEDFHIHLYTTGILAT-EEALKALAEAGLDEIRFHPPR--------PGSKSSEKYIENLKIAKKY--GMDVGVE-I 171 (353)
T ss_pred HHhhccceeEEEeeccccCC-HHHHHHHHhCCCCeEEecCCC--------ccccccHHHHHHHHHHHHh--Cccceee-c
Confidence 8876 467999999754444 899999999999998765321 0123567899999999999 8865433 2
Q ss_pred eecCCCHHHHHHHHHHHHhCCCCEEEeec
Q psy2895 213 VGLGENDEEILTVIHDMRNHNIDILTIGQ 241 (293)
Q Consensus 213 vG~gEt~ed~~~~l~~l~~l~~~~i~i~~ 241 (293)
..+-.-++.+.+.++++.+.+.++++++.
T Consensus 172 Paipg~e~~i~e~~~~~~~~~~~FlNiNE 200 (353)
T COG2108 172 PAIPGEEEAILEFAKALDENGLDFLNINE 200 (353)
T ss_pred CCCcchHHHHHHHHHHHHhcccceeeeee
Confidence 33333456788999999999999999973
No 132
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.38 E-value=2.9e-10 Score=102.88 Aligned_cols=199 Identities=14% Similarity=0.122 Sum_probs=135.3
Q ss_pred EeeeeCcccCCCCcCcccCC-CCCCCCChhHHHHHHHHHHH---CCCcEEEEee-ecCCCCCCCChhHHHHHHHHHHhhC
Q psy2895 63 TFMIMGSICTRRCKFCNISH-GRPDPLDIEEPKKIAYTINK---LKLNYVVITS-VNRDDLHDGGSSHFVSCIKHIRKLS 137 (293)
Q Consensus 63 ~~~~~t~~C~~~C~fC~~~~-~~~~~~~~eei~~~~~~~~~---~G~~~i~l~g-g~~~~l~~~~~~~~~~ll~~i~~~~ 137 (293)
.++-.+.||+.+|+||+... +..+.++..||++.+..+.. ..+..|+|-| |+| +. +.+.+.+.++.+++..
T Consensus 107 ~CvSsQvGC~m~C~FC~tg~~g~~rnlta~EI~~qv~~~~~~~~~~~~niVFmGmGEP--L~--N~d~V~~~~~~l~~~~ 182 (342)
T PRK14465 107 ICISSQIGCTLNCKFCATAKLEFQGNLKAHEIVDQVLQVEKIVGDRATNVVFMGMGEP--MH--NYFNVIRAASILHDPD 182 (342)
T ss_pred EEEEecCCCCCCCCCCcCCCCCccCCCCHHHHHHHHHHHHHhcCCCceEEEEEcCCcc--hh--hHHHHHHHHHHHhChh
Confidence 34444689999999999866 33467899999988876654 3478899999 885 32 3567777777776641
Q ss_pred ----CCcEEEEEcCCCcCcHHHHHHHHHH-cCCCeeeecccc-chHHHhhcC---CCCCHHHHHHHHHHHHHhCCCceee
Q psy2895 138 ----TKIKIEILIPDFRNQINHVLKIFKQ-ALPDVLNHNIET-VPRLYKKVR---PGSDYKHSLNLLKNFKKLYPNILTK 208 (293)
Q Consensus 138 ----~~~~i~~~~~~~~~~~~e~l~~l~~-aG~~~i~~~les-s~~~~~~i~---~~~~~e~~l~~i~~~~~~~pgi~~~ 208 (293)
...+|++.|+|+.. .+.+|.+ ..--.+.+++.+ .++.++++. +.++.++.++.++...+.. |-.+.
T Consensus 183 ~~~~~~r~itvST~G~~~----~i~~l~~~~~~~~LaiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~-~r~v~ 257 (342)
T PRK14465 183 AFNLGAKRITISTSGVVN----GIRRFIENKEPYNFAISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTREL-KRRIT 257 (342)
T ss_pred hhcCCCCeEEEeCCCchH----HHHHHHhhccCceEEEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHc-CCEEE
Confidence 12378888877653 2344443 322368888888 689999985 4678899999999665432 45444
Q ss_pred --EeEEeecCCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCccccccccChhHHHHHHHHHHHhcccc
Q psy2895 209 --SGIMVGLGENDEEILTVIHDMRNHNIDILTIGQYLMPSRLHLPVHRYLHPKFFEKFKKIAYKLGFKN 275 (293)
Q Consensus 209 --~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~~a~~r~~~p~~~~~~~~~~~~~G~~~ 275 (293)
.-+|-|+.+++||+.+..++++.++.. +.+-||-++. .-++-..++....+.+..++.|+..
T Consensus 258 ieyvLI~GvNDs~eda~~L~~ll~~l~~k-VnLIPyN~~~----~~~~~ps~e~i~~F~~~L~~~Gi~v 321 (342)
T PRK14465 258 FEYVMIPGVNMGRENANKLVKIARSLDCK-INVIPLNTEF----FGWRRPTDDEVAEFIMLLEPAGVPI 321 (342)
T ss_pred EEEEEECCccCCHHHHHHHHHHHhhCCCc-EEEEccCCCC----CCCCCCCHHHHHHHHHHHHHCCCeE
Confidence 445668899999999999999997643 3333343321 1123245566778888877777753
No 133
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.37 E-value=2.6e-10 Score=103.68 Aligned_cols=198 Identities=15% Similarity=0.143 Sum_probs=131.7
Q ss_pred EeeeeCcccCCCCcCcccCC-CCCCCCChhHHHHHHHHHHHC---CCcE-EEEeeecCCCCCCCChhHHHHHHHHHHhhC
Q psy2895 63 TFMIMGSICTRRCKFCNISH-GRPDPLDIEEPKKIAYTINKL---KLNY-VVITSVNRDDLHDGGSSHFVSCIKHIRKLS 137 (293)
Q Consensus 63 ~~~~~t~~C~~~C~fC~~~~-~~~~~~~~eei~~~~~~~~~~---G~~~-i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~ 137 (293)
.++..+.||+.+|.||.... +..+.++.+||++.+...... .+.. |+++||+| +. +.+.+.++++.+++..
T Consensus 103 ~cvSsqvGC~~~C~FC~tg~~G~~rnlt~~EI~~qv~~~~~~~~~~~~gvV~mggGEP--Ll--n~d~v~~~l~~l~~~~ 178 (342)
T PRK14454 103 ICVSTQVGCRMGCKFCASTIGGMVRNLTAGEMLDQILAAQNDIGERISNIVLMGSGEP--LD--NYENVMKFLKIVNSPY 178 (342)
T ss_pred EEEEcCCCCCCcCCcCCCCCCCCcccCCHHHHHHHHHHHHHHhcCCCCCEEEECCchh--hc--CHHHHHHHHHHHhccc
Confidence 34445699999999998765 334679999999998876542 2445 45677875 32 3677889999988631
Q ss_pred CCc-----EEEEEcCCCcCcHHHHHHHHHHcCC-Ceeeecccc-chHHHhhcCC---CCCHHHHHHHHHH-HHHhCCCce
Q psy2895 138 TKI-----KIEILIPDFRNQINHVLKIFKQALP-DVLNHNIET-VPRLYKKVRP---GSDYKHSLNLLKN-FKKLYPNIL 206 (293)
Q Consensus 138 ~~~-----~i~~~~~~~~~~~~e~l~~l~~aG~-~~i~~~les-s~~~~~~i~~---~~~~e~~l~~i~~-~~~~~pgi~ 206 (293)
++ ++.+.|.|+.. .+..+.+.++ ..+.+++.+ .++.++++.| .+..++.++.++. ..+. |-+
T Consensus 179 -gi~~~~r~itvsTsG~~p----~i~~l~~~~~~~~laisLka~d~e~r~~l~pv~~~~~L~~l~~~~~~~~~~~--~~r 251 (342)
T PRK14454 179 -GLNIGQRHITLSTCGIVP----KIYELADENLQITLAISLHAPNDELRKKMMPIANKYSIEELIEACKYYINKT--NRR 251 (342)
T ss_pred -ccCcCCCceEEECcCChh----HHHHHHhhcccceEEEecCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHh--CCE
Confidence 23 66777777654 2455555432 236678877 6899998875 3467777777655 4444 554
Q ss_pred --eeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCccccccccChhHHHHHHHHHHHhcccc
Q psy2895 207 --TKSGIMVGLGENDEEILTVIHDMRNHNIDILTIGQYLMPSRLHLPVHRYLHPKFFEKFKKIAYKLGFKN 275 (293)
Q Consensus 207 --~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~~a~~r~~~p~~~~~~~~~~~~~G~~~ 275 (293)
+..-+|-|+.++++|+.++.++++.+.. .+.+-||- |.+.. -++-..++.+..+.+...+.|+..
T Consensus 252 v~iey~LI~gvNDs~eda~~La~llk~l~~-~VnLiPyn-~~~~~--~~~~ps~e~l~~f~~~l~~~gi~v 318 (342)
T PRK14454 252 ITFEYALVKGVNDSKEDAKELGKLLKGMLC-HVNLIPVN-EVKEN--GFKKSSKEKIKKFKNILKKNGIET 318 (342)
T ss_pred EEEEEEeECCCCCCHHHHHHHHHHHhcCCc-eEEEEecC-CCCCC--CCCCCCHHHHHHHHHHHHHCCCcE
Confidence 4455777899999999999999998743 44443342 32211 122245566778888888877754
No 134
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.36 E-value=3.7e-10 Score=103.37 Aligned_cols=200 Identities=12% Similarity=0.188 Sum_probs=131.4
Q ss_pred eeeeCcccCCCCcCcccCC-CCCCCCChhHHHHHHHHHHHC----------CCcEEEEee-ecCCCCCCCChhHHHHHHH
Q psy2895 64 FMIMGSICTRRCKFCNISH-GRPDPLDIEEPKKIAYTINKL----------KLNYVVITS-VNRDDLHDGGSSHFVSCIK 131 (293)
Q Consensus 64 ~~~~t~~C~~~C~fC~~~~-~~~~~~~~eei~~~~~~~~~~----------G~~~i~l~g-g~~~~l~~~~~~~~~~ll~ 131 (293)
++..+-||+.+|.||..+. +..+.++.+||++.+..+... +++.|++.| |+| +. +.+.+.+.++
T Consensus 106 CvSsQvGC~~~C~FC~t~~~g~~rnLt~~EIv~Qv~~~~~~~~~~~~~gg~~~~nvV~mGmGEP--L~--N~d~v~~al~ 181 (372)
T PRK11194 106 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGMGEP--LL--NLNNVVPAME 181 (372)
T ss_pred EEecCCCCCCcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHhhhccccCCcccceEEEecCCcc--cc--CHHHHHHHHH
Confidence 3433599999999998775 445679999999987655421 267777777 554 32 3567778888
Q ss_pred HHHhhC-CCc---EEEEEcCCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCC---CCCHHHHHHHHHHHHHhCC
Q psy2895 132 HIRKLS-TKI---KIEILIPDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRP---GSDYKHSLNLLKNFKKLYP 203 (293)
Q Consensus 132 ~i~~~~-~~~---~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~---~~~~e~~l~~i~~~~~~~p 203 (293)
.+.+.. -++ ++++.|.|... .+++|.+..--.+.+++-+ .++.++++.| .+..++.++.++...+..+
T Consensus 182 ~l~~~~g~~i~~r~itVsTsG~~~----~i~~l~~~~d~~LaiSLha~d~e~R~~lmPin~~~~l~~ll~a~~~y~~~~~ 257 (372)
T PRK11194 182 IMLDDFGFGLSKRRVTLSTSGVVP----ALDKLGDMIDVALAISLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEKSN 257 (372)
T ss_pred HHhhhhccCcCCCeEEEECCCCch----HHHHHHhccCeEEEeeccCCCHHHHHHhcCCcccccHHHHHHHHHHHHHhcc
Confidence 777432 122 67787777553 4555655432245557776 6899999886 3567888877666544321
Q ss_pred ----CceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCccccccccChhHHHHHHHHHHHhcccc
Q psy2895 204 ----NILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIGQYLMPSRLHLPVHRYLHPKFFEKFKKIAYKLGFKN 275 (293)
Q Consensus 204 ----gi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~~a~~r~~~p~~~~~~~~~~~~~G~~~ 275 (293)
.+.+..-+|-|++++++++.++.++++.++. .|.+-|| .|.+.. -++-..++...++.+..+..|+..
T Consensus 258 ~~~rrI~irypLIpGvNDs~e~a~~La~ll~~l~~-~VnLIPY-N~~~~~--~~~~ps~e~v~~f~~~L~~~Gi~v 329 (372)
T PRK11194 258 ANQGRVTVEYVMLDHVNDGTEHAHQLAELLKDTPC-KINLIPW-NPFPGA--PYGRSSNSRIDRFSKVLMEYGFTV 329 (372)
T ss_pred cCCCeEEEEEEeECCCCCCHHHHHHHHHHHhcCCc-eEEEecC-CCCCCC--CCCCCCHHHHHHHHHHHHHCCCeE
Confidence 3567777888999999999999999999864 4555434 233211 112234556777777777777754
No 135
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=99.34 E-value=1.4e-10 Score=107.04 Aligned_cols=159 Identities=14% Similarity=0.233 Sum_probs=118.7
Q ss_pred eeeCcccCCCCcCcccCC--CC-CCCCChhHHHHHHHHHHHC-CCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCc
Q psy2895 65 MIMGSICTRRCKFCNISH--GR-PDPLDIEEPKKIAYTINKL-KLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKI 140 (293)
Q Consensus 65 ~~~t~~C~~~C~fC~~~~--~~-~~~~~~eei~~~~~~~~~~-G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~ 140 (293)
+.+|++|+..|.||.... +. ...++.+++.+.++.+.+. +++.|.|+||+|-.++ .+.+..+++.+++. |++
T Consensus 112 l~vT~~C~~~CryC~R~~~~g~~~~~ls~eei~~~i~yI~~~p~I~~VlLSGGDPLll~---d~~L~~iL~~L~~I-phV 187 (417)
T TIGR03820 112 FLVSNTCAMYCRHCTRKRKVGDRDSIPSKEQILEGIEYIRNTPQIRDVLLSGGDPLLLS---DDYLDWILTELRAI-PHV 187 (417)
T ss_pred EEEcCCcCCCCcCCCCcccCCcccccCCHHHHHHHHHHHHhcCCCCEEEEeCCccccCC---hHHHHHHHHHHhhc-CCC
Confidence 346999999999998765 22 2467889999988888874 8999999999973222 23566667888773 555
Q ss_pred E-EEEEc--C----CCcCcHHHHHHHHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceee--EeE
Q psy2895 141 K-IEILI--P----DFRNQINHVLKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTK--SGI 211 (293)
Q Consensus 141 ~-i~~~~--~----~~~~~~~e~l~~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~--~~~ 211 (293)
. |++.+ | ..++ ++.++.|++++...+.+.+++.+++ .++..++++.++++ |+.+. +.+
T Consensus 188 ~~IRI~TR~pvv~P~RIT--~ell~~Lk~~~~~~v~~h~nhp~Ei---------t~~a~~Al~~L~~a--GI~l~nQsVL 254 (417)
T TIGR03820 188 EVIRIGTRVPVVLPQRIT--DELVAILKKHHPVWLNTHFNHPREI---------TASSKKALAKLADA--GIPLGNQSVL 254 (417)
T ss_pred ceEEEeeccccccccccC--HHHHHHHHhcCCeEEEEeCCChHhC---------hHHHHHHHHHHHHc--CCEEEeeceE
Confidence 3 66655 3 2234 8899999999876776666654433 57889999999999 99755 455
Q ss_pred EeecCCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 212 MVGLGENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 212 ivG~gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
+=|.+++.+-+.++.+.+.++|+.==+++
T Consensus 255 LkGVND~~~~l~~L~~~L~~~gV~PYYl~ 283 (417)
T TIGR03820 255 LAGVNDCPRIMKKLVHKLVANRVRPYYLY 283 (417)
T ss_pred ECCcCCCHHHHHHHHHHHHHCCCeeceee
Confidence 66889999999999999999998644443
No 136
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.34 E-value=2.6e-10 Score=103.71 Aligned_cols=198 Identities=13% Similarity=0.103 Sum_probs=133.9
Q ss_pred eeeeCcccCCCCcCcccCC-CCCCCCChhHHHHHHHHHHHC------CCcEEEEe-eecCCCCCCCChhHHHHHHHHHHh
Q psy2895 64 FMIMGSICTRRCKFCNISH-GRPDPLDIEEPKKIAYTINKL------KLNYVVIT-SVNRDDLHDGGSSHFVSCIKHIRK 135 (293)
Q Consensus 64 ~~~~t~~C~~~C~fC~~~~-~~~~~~~~eei~~~~~~~~~~------G~~~i~l~-gg~~~~l~~~~~~~~~~ll~~i~~ 135 (293)
++-..-||+.+|.||..+. +..+.++.+||++++..+... ....|++. ||+| +. +.+.+.++++.+++
T Consensus 113 CvSsQvGC~~~C~FCatg~~g~~RnLt~~EIv~QV~~~~~~~~~~~~~~~~vVfmGmGEP--L~--N~d~v~~~l~~l~~ 188 (356)
T PRK14462 113 CVSSQVGCKVGCAFCLTAKGGFVRNLSAGEIVGQILWIKKDNNIPYEKRVNIVYMGMGEP--LD--NLDNVSKAIKIFSE 188 (356)
T ss_pred eeeccccCCCCCccCCCCCCCCcccCCHHHHHHHHHHHHHhhhccccccCCeEEeCCccc--cc--CHHHHHHHHHHhcC
Confidence 4444589999999998765 345679999999998755432 24577787 5554 32 36788899999987
Q ss_pred h-CCCc---EEEEEcCCCcCcHHHHHHHHHHcCC-Ceeeecccc-chHHHhhcCC---CCCHHHHHHHHHHH-HHhCCCc
Q psy2895 136 L-STKI---KIEILIPDFRNQINHVLKIFKQALP-DVLNHNIET-VPRLYKKVRP---GSDYKHSLNLLKNF-KKLYPNI 205 (293)
Q Consensus 136 ~-~~~~---~i~~~~~~~~~~~~e~l~~l~~aG~-~~i~~~les-s~~~~~~i~~---~~~~e~~l~~i~~~-~~~~pgi 205 (293)
. +-++ ++.+.|.|+.. .+++|.+..+ -.+.+++-+ .++.++++.| .++.+++++.++.. .+. |-
T Consensus 189 ~~Gl~~~~r~itVsTsG~~~----~i~~L~~~dl~v~LaiSLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~--~~ 262 (356)
T PRK14462 189 NDGLAISPRRQTISTSGLAS----KIKKLGEMNLGVQLAISLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQ--RK 262 (356)
T ss_pred ccCCCcCCCceEEECCCChH----HHHHHHhcCCCeEEEEECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHh--CC
Confidence 4 2122 56777767653 5666766544 335667877 6899999875 45679999988744 455 55
Q ss_pred e--eeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCccccccccChhHHHHHHHHHHHhcccc
Q psy2895 206 L--TKSGIMVGLGENDEEILTVIHDMRNHNIDILTIGQYLMPSRLHLPVHRYLHPKFFEKFKKIAYKLGFKN 275 (293)
Q Consensus 206 ~--~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~~a~~r~~~p~~~~~~~~~~~~~G~~~ 275 (293)
. +..-+|-|+.++++|..++.++++.++. .|.+-||- |.+.. -++-..++.+.++.+.....|+..
T Consensus 263 ~i~ieyvLI~GvNDs~e~a~~La~llk~l~~-~VnLIPyn-~~~~~--~~~~ps~e~i~~f~~~l~~~gi~v 330 (356)
T PRK14462 263 RVMFEYLVIKDVNDDLKSAKKLVKLLNGIKA-KVNLILFN-PHEGS--KFERPSLEDMIKFQDYLNSKGLLC 330 (356)
T ss_pred eEEEEEEEECCCCCCHHHHHHHHHHHhhcCc-EEEEEeCC-CCCCC--CCCCCCHHHHHHHHHHHHHCCCcE
Confidence 4 4456677999999999999999999864 45554442 32211 122245566777887777777653
No 137
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=99.30 E-value=4.9e-10 Score=100.36 Aligned_cols=144 Identities=13% Similarity=0.157 Sum_probs=107.5
Q ss_pred CCChhHHHHHHHHHHH---CCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHc
Q psy2895 87 PLDIEEPKKIAYTINK---LKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQA 163 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~---~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~a 163 (293)
.++.+++.+.+..... .+...|.|+||+| .+. .+.+.++++.+++. ++.+.+.|+|+.. .+.++.+.+
T Consensus 105 ~~t~eel~~~i~~~~~~~~~~~~~V~~sGGEP-ll~---~~~l~~l~~~~k~~--g~~~~i~TnG~~~--~~~~~~ll~- 175 (295)
T TIGR02494 105 EMTVEEVMRVVLRDSIFYRNSGGGVTLSGGEP-LLQ---PEFALALLQACHER--GIHTAVETSGFTP--WETIEKVLP- 175 (295)
T ss_pred CCcHHHHHHHHHHHHHhcccCCCcEEeeCcch-hch---HHHHHHHHHHHHHc--CCcEeeeCCCCCC--HHHHHHHHh-
Confidence 3577888877765432 2346799999996 231 34457999999886 4567777777765 566677664
Q ss_pred CCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCcee--eEeEEeecCCCHHHHHHHHHHHHhCC--CCEEE
Q psy2895 164 LPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILT--KSGIMVGLGENDEEILTVIHDMRNHN--IDILT 238 (293)
Q Consensus 164 G~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~--~~~~ivG~gEt~ed~~~~l~~l~~l~--~~~i~ 238 (293)
.+|.+.+++++ +++.|+++++ .+++.+++.++.+.+. |..+ .+.++.|+.++.+++.+.++++++++ +..+.
T Consensus 176 ~~d~~~isl~~~~~~~~~~~~g-~~~~~vl~~i~~l~~~--~~~~~i~~~~v~~~n~~~~ei~~l~~~~~~~~~~v~~v~ 252 (295)
T TIGR02494 176 YVDLFLFDIKHLDDERHKEVTG-VDNEPILENLEALAAA--GKNVVIRIPVIPGFNDSEENIEAIAAFLRKLEPGVDEID 252 (295)
T ss_pred hCCEEEEeeccCChHHHHHHhC-CChHHHHHHHHHHHhC--CCcEEEEeceeCCcCCCHHHHHHHHHHHHHhccCCceEE
Confidence 57888889988 6889988874 4789999999999998 7654 44456677889999999999999998 67777
Q ss_pred eecC
Q psy2895 239 IGQY 242 (293)
Q Consensus 239 i~~~ 242 (293)
+.+|
T Consensus 253 l~~~ 256 (295)
T TIGR02494 253 LLPY 256 (295)
T ss_pred ecCC
Confidence 7644
No 138
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.29 E-value=3.9e-10 Score=101.87 Aligned_cols=198 Identities=13% Similarity=0.136 Sum_probs=130.4
Q ss_pred eeeeCcccCCCCcCcccCC-CCCCCCChhHHHHHHHHHHHC-CCcEEEEee-ecCCCCCCCChhHHHHHHHHHHhhC--C
Q psy2895 64 FMIMGSICTRRCKFCNISH-GRPDPLDIEEPKKIAYTINKL-KLNYVVITS-VNRDDLHDGGSSHFVSCIKHIRKLS--T 138 (293)
Q Consensus 64 ~~~~t~~C~~~C~fC~~~~-~~~~~~~~eei~~~~~~~~~~-G~~~i~l~g-g~~~~l~~~~~~~~~~ll~~i~~~~--~ 138 (293)
++-.+.||+.+|.||.... +..+.++.+||++.+..+.+. .++.|+|.| |+| +. +.+.+.+.++.+.+.. +
T Consensus 99 CvSsQvGC~~~C~FC~tg~~g~~RnLs~~EI~~Qv~~~~~~~~i~nIVfmGmGEP--l~--N~d~vl~ai~~l~~~~~i~ 174 (344)
T PRK14464 99 CVSTQVGCAVGCVFCMTGRSGLLRQLGSAEIVAQVVLARRRRAVKKVVFMGMGEP--AH--NLDNVLEAIDLLGTEGGIG 174 (344)
T ss_pred EEEccCCcCCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeccCcc--cC--CHHHHHHHHHHhhchhcCC
Confidence 3444699999999998754 344678999999988877664 589999999 875 32 2456666666665431 2
Q ss_pred CcEEEEEcCCCcCcHHHHHHHHHHcCCC-eeeecccc-chHHHhhcCC---CCCHHHHHHHHHHHHHhCCCceee--EeE
Q psy2895 139 KIKIEILIPDFRNQINHVLKIFKQALPD-VLNHNIET-VPRLYKKVRP---GSDYKHSLNLLKNFKKLYPNILTK--SGI 211 (293)
Q Consensus 139 ~~~i~~~~~~~~~~~~e~l~~l~~aG~~-~i~~~les-s~~~~~~i~~---~~~~e~~l~~i~~~~~~~pgi~~~--~~~ 211 (293)
...+.++|.+.. ..+.+|.+.++. .+.+++.+ .++.++++.| .++.++.++.++...+.. |-.+. .-+
T Consensus 175 ~r~itiST~G~~----~~i~rL~~~~v~~~LaiSLhA~~~e~R~~imP~~~~~~l~el~~a~~~~~~~~-grri~~EyvL 249 (344)
T PRK14464 175 HKNLVFSTVGDP----RVFERLPQQRVKPALALSLHTTRAELRARLLPRAPRIAPEELVELGEAYARAT-GYPIQYQWTL 249 (344)
T ss_pred CceEEEecccCc----hHHHHHHHhcCChHHHHHhcCCChhHhheeCCccCCCCHHHHHHHHHHHHHHH-CCEEEEEEEE
Confidence 235666554433 356666654432 34568888 5889888875 458999999988876653 65444 334
Q ss_pred EeecCCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCccccccccChhHHHHHHHHHHHhccc
Q psy2895 212 MVGLGENDEEILTVIHDMRNHNIDILTIGQYLMPSRLHLPVHRYLHPKFFEKFKKIAYKLGFK 274 (293)
Q Consensus 212 ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~~a~~r~~~p~~~~~~~~~~~~~G~~ 274 (293)
+=|++++.++..++.++++.+.+. +.+-|| .|.+.. . ++-..++...++.+..+..|+.
T Consensus 250 l~GVNDs~e~a~~L~~~l~~~~~~-vNLIPy-N~v~g~-~-~~rp~~~~i~~f~~~L~~~gi~ 308 (344)
T PRK14464 250 LEGVNDSDEEMDGIVRLLKGKYAV-MNLIPY-NSVDGD-A-YRRPSGERIVAMARYLHRRGVL 308 (344)
T ss_pred eCCCCCCHHHHHHHHHHHhccccc-cceecC-CccCCC-C-ccCCCHHHHHHHHHHHHHCCce
Confidence 447899999999999999876542 333333 233321 1 2223455577788877777775
No 139
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=99.25 E-value=1.5e-09 Score=92.28 Aligned_cols=177 Identities=8% Similarity=0.076 Sum_probs=132.7
Q ss_pred CCCChhHHHHHHHHHHHC---CCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHH
Q psy2895 86 DPLDIEEPKKIAYTINKL---KLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQ 162 (293)
Q Consensus 86 ~~~~~eei~~~~~~~~~~---G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~ 162 (293)
..+++|++++.+.+-... +-..|+++||+| .+ ..+.+.++++.+++. ++.+.+-|+|+.. .+.++.+.+
T Consensus 17 ~~~t~eel~~~~~~~~~f~~~sggGVt~SGGEP-ll---q~~fl~~l~~~~k~~--gi~~~leTnG~~~--~~~~~~l~~ 88 (213)
T PRK10076 17 RDITLDALEREVMKDDIFFRTSGGGVTLSGGEV-LM---QAEFATRFLQRLRLW--GVSCAIETAGDAP--ASKLLPLAK 88 (213)
T ss_pred cccCHHHHHHHHHhhhHhhcCCCCEEEEeCchH-Hc---CHHHHHHHHHHHHHc--CCCEEEECCCCCC--HHHHHHHHH
Confidence 458999999988765442 445799999996 23 146678999999886 4667777788776 677888775
Q ss_pred cCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCc--eeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEe
Q psy2895 163 ALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNI--LTKSGIMVGLGENDEEILTVIHDMRNHNIDILTI 239 (293)
Q Consensus 163 aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi--~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i 239 (293)
.+|.+.+.+.+ +++.|+++. +.+.+.+++.++.+.+. |. .+.+.+|-|+..+++++.++.+++++++++.+.+
T Consensus 89 -~~D~~l~DiK~~d~~~~~~~t-G~~~~~il~nl~~l~~~--g~~v~iR~~vIPg~nd~~e~i~~ia~~l~~l~~~~~~l 164 (213)
T PRK10076 89 -LCDEVLFDLKIMDATQARDVV-KMNLPRVLENLRLLVSE--GVNVIPRLPLIPGFTLSRENMQQALDVLIPLGIKQIHL 164 (213)
T ss_pred -hcCEEEEeeccCCHHHHHHHH-CCCHHHHHHHHHHHHhC--CCcEEEEEEEECCCCCCHHHHHHHHHHHHHcCCceEEE
Confidence 58999888888 689998887 45789999999999998 65 5778889999999999999999999998887776
Q ss_pred ecCCCCCC--------Ccccc--ccccChhHHHHHHHHHHHhcccc
Q psy2895 240 GQYLMPSR--------LHLPV--HRYLHPKFFEKFKKIAYKLGFKN 275 (293)
Q Consensus 240 ~~~~~p~~--------~~~a~--~r~~~p~~~~~~~~~~~~~G~~~ 275 (293)
.+|-+ .. +.... .....++.+.++.+.+++.|+..
T Consensus 165 lpyh~-~g~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~ 209 (213)
T PRK10076 165 LPFHQ-YGEPKYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQV 209 (213)
T ss_pred ecCCc-cchhHHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeE
Confidence 55532 11 01111 11134455777888888888765
No 140
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]
Probab=99.20 E-value=9.7e-10 Score=94.93 Aligned_cols=176 Identities=18% Similarity=0.278 Sum_probs=123.7
Q ss_pred eeCcccCCCCcCcccCCCC--C-CCCChhHHHHHHHHHHHCC-CcEEEEeeecCCCCCCCChhHHHHHHHHHHhhC-CCc
Q psy2895 66 IMGSICTRRCKFCNISHGR--P-DPLDIEEPKKIAYTINKLK-LNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLS-TKI 140 (293)
Q Consensus 66 ~~t~~C~~~C~fC~~~~~~--~-~~~~~eei~~~~~~~~~~G-~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~-~~~ 140 (293)
.+||.|-++|.||.....+ + ..++++||....-...+.. +...+|++|--.+ ++...+.+.++++.++=.+ -.-
T Consensus 59 LlTN~CiyDC~YCINr~s~~~pra~ftp~Eiv~ltlnfYrRnYIeGLFLSSGvi~~-~DyTmE~mi~var~LRle~~f~G 137 (404)
T COG4277 59 LLTNFCIYDCAYCINRSSNDTPRARFTPEEIVDLTLNFYRRNYIEGLFLSSGVIKN-PDYTMEEMIEVARILRLEHKFRG 137 (404)
T ss_pred HHhhhHHHhhHHHhccccCCCcccccCHHHHHHHHHHHHHHhhhhhheeccccccC-cchHHHHHHHHHHHHhhccccCc
Confidence 3599999999999986543 3 4689999999887776654 4667888885321 2333455555555554221 122
Q ss_pred EEEEE-cCCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHh-------------CCCc
Q psy2895 141 KIEIL-IPDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKL-------------YPNI 205 (293)
Q Consensus 141 ~i~~~-~~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~-------------~pgi 205 (293)
.|++- .|+-. ++.+++... -+|++++++|. .++-++.+.+.+++.++++.+.+++.. .|.+
T Consensus 138 YIHlK~IPgas---~~li~eagl-yadRvSiNIElp~~~~lk~lap~K~p~dI~r~Mg~ir~~i~e~~e~~~r~r~tp~f 213 (404)
T COG4277 138 YIHLKIIPGAS---PDLIKEAGL-YADRVSINIELPTDDGLKLLAPEKDPTDILRSMGWIRLKILENAEDKRRKRHTPEF 213 (404)
T ss_pred EEEEEecCCCC---HHHHHHHhh-hhheeEEeEecCCcchhhhhCCCCChHHHHHHHHHHHHHHhhcccchhhhccCccc
Confidence 46652 35432 566666543 37999999999 689999999998889999888887661 1344
Q ss_pred e---eeEeEEeec-CCCHHHHHHHHHHH-HhCCCCEEEeecCCCCCC
Q psy2895 206 L---TKSGIMVGL-GENDEEILTVIHDM-RNHNIDILTIGQYLMPSR 247 (293)
Q Consensus 206 ~---~~~~~ivG~-gEt~ed~~~~l~~l-~~l~~~~i~i~~~~~p~~ 247 (293)
. -++.||||- |||++++...-..+ ...+...+.++.| .|.+
T Consensus 214 apaGQSTQmivGA~~~tD~~Ilsrs~~ly~~y~lkRVyySaf-~Pv~ 259 (404)
T COG4277 214 APAGQSTQMIVGADGETDEDILSRSENLYGRYSLKRVYYSAF-SPVP 259 (404)
T ss_pred cCCCCceEEEEecCCCchHHHHHHHHHHhhccceeEEEeecc-cccC
Confidence 1 358899999 99999999988877 4578888888744 5654
No 141
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=99.15 E-value=3e-09 Score=96.89 Aligned_cols=176 Identities=16% Similarity=0.260 Sum_probs=126.0
Q ss_pred eeeCcccCCC----CcCcccCC-CCCCCCChhHHHHHHHHHHHCCCcEEEEe-------eecC---CCCCCCChhHHHHH
Q psy2895 65 MIMGSICTRR----CKFCNISH-GRPDPLDIEEPKKIAYTINKLKLNYVVIT-------SVNR---DDLHDGGSSHFVSC 129 (293)
Q Consensus 65 ~~~t~~C~~~----C~fC~~~~-~~~~~~~~eei~~~~~~~~~~G~~~i~l~-------gg~~---~~l~~~~~~~~~~l 129 (293)
++..+||+.. |+||.-+. +.+..+++|.|+++++.+.+.|++..-|. .+.. ...|.-+.+.+.++
T Consensus 187 iETyRGC~r~~~ggCSFCtEp~~g~~~~R~~e~Vv~EVkaLY~~GvrhFRlGRQ~difsy~~~~~g~e~P~PnPealekL 266 (560)
T COG1031 187 IETYRGCPRRVSGGCSFCTEPVRGRPEFRPPEDVVEEVKALYRAGVRHFRLGRQADIFSYGADDNGGEVPRPNPEALEKL 266 (560)
T ss_pred EeeccCCcccccCCCccccCcCcCCcccCCHHHHHHHHHHHHHhccceeeeccccceeeecccccCCCCCCCCHHHHHHH
Confidence 5567999987 99999876 56678999999999999999999875443 1111 01233346889999
Q ss_pred HHHHHhhCCCc-EEEEE--cCCCcCc----HHHHHHHHHHcCC--Ceeeecccc-chHHHhhcCCCCCHHHHHHHHHHHH
Q psy2895 130 IKHIRKLSTKI-KIEIL--IPDFRNQ----INHVLKIFKQALP--DVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFK 199 (293)
Q Consensus 130 l~~i~~~~~~~-~i~~~--~~~~~~~----~~e~l~~l~~aG~--~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~ 199 (293)
.+-|+...|+. .+++- .|.++.+ ..+.++.+.+.|- |...+++|| .+++.++=+-..+.|+.+++++-+-
T Consensus 267 ~~Gir~~AP~l~tLHiDNaNP~tIa~yp~eSr~i~K~ivky~TpGnVaAfGlEsaDp~V~r~NnL~~spEEvl~AV~ivn 346 (560)
T COG1031 267 FRGIRNVAPNLKTLHIDNANPATIARYPEESREIAKVIVKYGTPGNVAAFGLESADPRVARKNNLNASPEEVLEAVEIVN 346 (560)
T ss_pred HHHHHhhCCCCeeeeecCCCchhhhcChHHHHHHHHHHHhhCCCCceeeeeccccCHHHHhhccccCCHHHHHHHHHHHH
Confidence 99999988876 35552 2444332 2455666666553 447789999 5788776555669999999999887
Q ss_pred Hh-----CCCc---eeeEeEEeec-CCCHHHHHHHHHHHHhCC-----CCEEEee
Q psy2895 200 KL-----YPNI---LTKSGIMVGL-GENDEEILTVIHDMRNHN-----IDILTIG 240 (293)
Q Consensus 200 ~~-----~pgi---~~~~~~ivG~-gEt~ed~~~~l~~l~~l~-----~~~i~i~ 240 (293)
+. ..|+ -...++++|+ |||.|-+.-..++|+++= +..|+|.
T Consensus 347 ~vG~~rg~nGlP~lLPGINfv~GL~GEtkeT~~ln~efL~~ild~gllvRRINIR 401 (560)
T COG1031 347 EVGGGRGYNGLPYLLPGINFVFGLPGETKETYELNYEFLKEILDEGLLVRRINIR 401 (560)
T ss_pred HhcCccCcCCCccccccceeEecCCCccHHHHHhhHHHHHHHHhcCceEEEeeee
Confidence 65 1122 3567899999 999999999999998743 4456664
No 142
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=99.12 E-value=2.7e-09 Score=92.54 Aligned_cols=133 Identities=14% Similarity=0.108 Sum_probs=91.3
Q ss_pred CceeEeeeeCcccCCCCcCcccCCC----CC---CCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHH
Q psy2895 59 RGVATFMIMGSICTRRCKFCNISHG----RP---DPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIK 131 (293)
Q Consensus 59 ~~~~~~~~~t~~C~~~C~fC~~~~~----~~---~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~ 131 (293)
|...+|+- +.|||.+|.||..+.. .. ..++.+++++.++++...|++.|+||||+| .+ .+.+.++++
T Consensus 21 G~~~~FvR-~~gCNlrC~~Cdt~~~~~~~~~~~~~~~s~~ei~~~i~~~~~~~~~~V~lTGGEP-ll----~~~l~~li~ 94 (238)
T TIGR03365 21 GQKTMFVR-TGGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKALGGGTPLHVSLSGGNP-AL----QKPLGELID 94 (238)
T ss_pred CCeEEEEE-eCCcCCcCcCCCCccccCcccCCccccCCHHHHHHHHHHHhCCCCCeEEEeCCch-hh----hHhHHHHHH
Confidence 44455654 7899999999997652 11 248999999999887766789999999996 23 146889999
Q ss_pred HHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeE
Q psy2895 132 HIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGI 211 (293)
Q Consensus 132 ~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ 211 (293)
.+++. ++.+.+.|+|+.. .+ .++ .++.+.+++..... .....++...+.++.+++ +..+..-+
T Consensus 95 ~l~~~--g~~v~leTNGtl~--~~---~l~--~~d~v~vs~K~~~s-----g~~~~~~~~~~~ik~l~~---~~~~~vK~ 157 (238)
T TIGR03365 95 LGKAK--GYRFALETQGSVW--QD---WFR--DLDDLTLSPKPPSS-----GMETDWQALDDCIERLDD---GPQTSLKV 157 (238)
T ss_pred HHHHC--CCCEEEECCCCCc--HH---HHh--hCCEEEEeCCCCCC-----CCCCcHHHHHHHHHHhhh---cCceEEEE
Confidence 99876 4578888887664 33 233 36678888775211 112247777777777764 45556666
Q ss_pred Eee
Q psy2895 212 MVG 214 (293)
Q Consensus 212 ivG 214 (293)
+++
T Consensus 158 Vv~ 160 (238)
T TIGR03365 158 VVF 160 (238)
T ss_pred EEC
Confidence 666
No 143
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=99.11 E-value=2.3e-09 Score=93.73 Aligned_cols=174 Identities=17% Similarity=0.309 Sum_probs=118.8
Q ss_pred eEeeeeC--cccCCCCcCcccCCCC---C-C---------CCChhHHHHHHHHHHHCC-CcEEEEeeecCCCCCCCChhH
Q psy2895 62 ATFMIMG--SICTRRCKFCNISHGR---P-D---------PLDIEEPKKIAYTINKLK-LNYVVITSVNRDDLHDGGSSH 125 (293)
Q Consensus 62 ~~~~~~t--~~C~~~C~fC~~~~~~---~-~---------~~~~eei~~~~~~~~~~G-~~~i~l~gg~~~~l~~~~~~~ 125 (293)
..+...+ .+|..+|+||.++.+. + . ....+++++...+- .| .+.|.++--..|.. ..+
T Consensus 30 ta~l~t~~~~~c~~~ca~c~~ar~s~a~p~~~~lsRv~w~~v~l~~~~~~~~~~--~g~~~rici~~i~~p~~----~~d 103 (339)
T COG2516 30 TAYLMTTYPGGCIADCAYCPQARSSTANPPKKVLSRVEWPAVALEEVLKRLFYD--LGNFKRICIQQIAYPRA----LND 103 (339)
T ss_pred eeeeeeecCCceeechhhChhhhhcccCCCcceeeecccccchHHHHHhHhhhh--hcccccccceeeccccc----cch
Confidence 3444445 8999999999987632 1 0 13345554433321 23 35565554433221 345
Q ss_pred HHHHHHHHHhhCCCcEEEEE--cCCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCC----CCCHHHHHHHHHHH
Q psy2895 126 FVSCIKHIRKLSTKIKIEIL--IPDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRP----GSDYKHSLNLLKNF 198 (293)
Q Consensus 126 ~~~ll~~i~~~~~~~~i~~~--~~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~----~~~~e~~l~~i~~~ 198 (293)
+..+++.++-.. +..++++ ...... .+.+...++.|.+.+.+.++. ++++++++++ .|++|+.++.+.++
T Consensus 104 ~~~i~~~~~~~~-~~~itiseci~~~~~--~~~l~e~~klg~d~l~V~~daa~~~~~e~v~~~s~s~~S~e~~~~~l~~~ 180 (339)
T COG2516 104 LKLILERLHIRL-GDPITISECITAVSL--KEELEEYRKLGADYLGVAEDAANEELFEKVRKTSGSPHSWERYWEFLEKV 180 (339)
T ss_pred hhhhhhhhhhcc-CCceehhhhhhcccc--hHHHHHHHhcchhhhhHHHHhcCHHHHHHHHhccCCCCcHHHHHHHHHHH
Confidence 666777776322 2344443 221111 567788888999999999998 6899998842 47999999999999
Q ss_pred HHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEeecCCCCC
Q psy2895 199 KKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIGQYLMPS 246 (293)
Q Consensus 199 ~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~ 246 (293)
.++++...+++++|||+|||+.++.+++..++..+.. ++++.| .|.
T Consensus 181 ~~~~~k~rv~ihliVglGesD~~~ve~~~~v~~~g~~-v~Lfaf-~P~ 226 (339)
T COG2516 181 AEAFGKGRVGIHLIVGLGESDKDIVETIKRVRKRGGI-VSLFAF-TPL 226 (339)
T ss_pred HHHhccCCcceeEEeccCCchHHHHHHHHHHHhcCce-EEEEEe-ccc
Confidence 9998778899999999999999999999999998875 455534 453
No 144
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.11 E-value=9.6e-09 Score=89.97 Aligned_cols=176 Identities=13% Similarity=0.154 Sum_probs=123.8
Q ss_pred eeEeeeeCcccCC----CCcCcccCCC-CCCCCChhHHHHHHHHHHHC-C---Cc-EE-EEeeecCCCCCCCChhHHHHH
Q psy2895 61 VATFMIMGSICTR----RCKFCNISHG-RPDPLDIEEPKKIAYTINKL-K---LN-YV-VITSVNRDDLHDGGSSHFVSC 129 (293)
Q Consensus 61 ~~~~~~~t~~C~~----~C~fC~~~~~-~~~~~~~eei~~~~~~~~~~-G---~~-~i-~l~gg~~~~l~~~~~~~~~~l 129 (293)
..+++.-|.||.+ .|.+|+.+.+ .+...+.|++.++...+... . -. -| ++|+|.--|-.....+.-..+
T Consensus 47 ~l~vILrT~GC~w~~~~gC~MCgY~~d~~~~~vs~E~l~~qfd~~~~k~~~~~~~~~vkIFTSGSFLD~~EVP~e~R~~I 126 (358)
T COG1244 47 SLTVILRTRGCRWYREGGCYMCGYPADSAGEPVSEENLINQFDEAYSKYEGKFDEFVVKIFTSGSFLDPEEVPREARRYI 126 (358)
T ss_pred eEEEEEecCCcceeccCCcceeccccccCCCCCCHHHHHHHHHHHHHHhcccCCCceEEEEcccccCChhhCCHHHHHHH
Confidence 3344444889985 3999999885 45678999999988877542 1 22 23 567775311111123455567
Q ss_pred HHHHHhhCCCcEEEEEc-CCCcCcHHHHHHHHHHc--CC-Ceeeecccc-chHHH-hhcCCCCCHHHHHHHHHHHHHhCC
Q psy2895 130 IKHIRKLSTKIKIEILI-PDFRNQINHVLKIFKQA--LP-DVLNHNIET-VPRLY-KKVRPGSDYKHSLNLLKNFKKLYP 203 (293)
Q Consensus 130 l~~i~~~~~~~~i~~~~-~~~~~~~~e~l~~l~~a--G~-~~i~~~les-s~~~~-~~i~~~~~~e~~l~~i~~~~~~~p 203 (293)
++.|.+..--..|-+-+ |+++. +|.++.+.+. |. -.+.+|+|| +|++. ..|+++.++++++++++.++++
T Consensus 127 l~~is~~~~v~~vvvESRpE~I~--eE~l~e~~~il~gk~~EvaIGLETanD~ire~sINKGftF~df~~A~~~ir~~-- 202 (358)
T COG1244 127 LERISENDNVKEVVVESRPEFIR--EERLEEITEILEGKIVEVAIGLETANDKIREDSINKGFTFEDFVRAAEIIRNY-- 202 (358)
T ss_pred HHHHhhccceeEEEeecCchhcC--HHHHHHHHHhhCCceEEEEEecccCcHHHHHHhhhcCCcHHHHHHHHHHHHHc--
Confidence 77777753112455544 78888 8999999876 43 237889999 68887 5689999999999999999999
Q ss_pred CceeeEeEEeec-----CCCHHHHHHHHHHHHhCCCCEEEeec
Q psy2895 204 NILTKSGIMVGL-----GENDEEILTVIHDMRNHNIDILTIGQ 241 (293)
Q Consensus 204 gi~~~~~~ivG~-----gEt~ed~~~~l~~l~~l~~~~i~i~~ 241 (293)
|+.+.+.+++-. .|..+|+..++. ..+-+.+.+++++
T Consensus 203 g~~vktYlllKP~FlSE~eAI~D~i~Si~-~~~~~~d~iSinp 244 (358)
T COG1244 203 GAKVKTYLLLKPPFLSEKEAIEDVISSIV-AAKPGTDTISINP 244 (358)
T ss_pred CCceeEEEEecccccChHHHHHHHHHHHH-HhccCCCeEEecc
Confidence 999999998864 455666767766 4556778888863
No 145
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=99.07 E-value=1.1e-08 Score=88.28 Aligned_cols=197 Identities=16% Similarity=0.186 Sum_probs=131.4
Q ss_pred cccCCCCcCcccCC----CCCCCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEE
Q psy2895 69 SICTRRCKFCNISH----GRPDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEI 144 (293)
Q Consensus 69 ~~C~~~C~fC~~~~----~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~ 144 (293)
.|||++|.||+..- +....+++|++.+++..+.+.|++.|.+.||+|. + ....+.+.++.+.+. +.+-.
T Consensus 126 sgCnfrCVfCQNwdISq~~~g~~v~~e~La~i~~~~~~~GakNvN~Vgg~Pt--p--~lp~Ile~l~~~~~~---iPvvw 198 (335)
T COG1313 126 SGCNFRCVFCQNWDISQFGIGKEVTPEDLAEIILELRRHGAKNVNFVGGDPT--P--HLPFILEALRYASEN---IPVVW 198 (335)
T ss_pred cCcceEEEEecCccccccCCCeEecHHHHHHHHHHHHHhcCcceeecCCCCC--C--chHHHHHHHHHHhcC---CCEEE
Confidence 69999999999754 2235789999999999999999999999999962 2 245677777776664 34444
Q ss_pred EcCCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCC-CHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHH
Q psy2895 145 LIPDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGS-DYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEI 222 (293)
Q Consensus 145 ~~~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~-~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~ 222 (293)
.++++.+ .|.++.|.. -+|.+-..+.= .++.-.+..+-. =++-..+.+..+.+...|+.+.--++-|+-|. --
T Consensus 199 NSnmY~s--~E~l~lL~g-vVDiyL~DfKYgNdeca~kySkvp~Y~eVv~rn~~~~~~~~g~~iiRHLVlPghlec--CT 273 (335)
T COG1313 199 NSNMYMS--EETLKLLDG-VVDIYLPDFKYGNDECAEKYSKVPNYWEVVTRNILEAKEQVGGLIIRHLVLPGHLEC--CT 273 (335)
T ss_pred ecCCccC--HHHHHHhhc-cceeeecccccCCHHHHHHhhcCCchHHHHHHHHHHHHHhcCceEEEEEecCCchhh--cc
Confidence 5567777 888888842 24544333432 455555555322 35556677777777754576777777776222 12
Q ss_pred HHHHHHHHhCCCCEEEee---cCCCCCC---CccccccccChhHHHHHHHHHHHhcccchhc
Q psy2895 223 LTVIHDMRNHNIDILTIG---QYLMPSR---LHLPVHRYLHPKFFEKFKKIAYKLGFKNVLV 278 (293)
Q Consensus 223 ~~~l~~l~~l~~~~i~i~---~~~~p~~---~~~a~~r~~~p~~~~~~~~~~~~~G~~~~~~ 278 (293)
...++++.+.-.+.+.++ || .|.- +...+.|-+..+++++..+++.+.|+.....
T Consensus 274 kpI~~wiae~~g~~~~vNiM~QY-~P~ykA~eypeI~R~lt~eE~e~a~~~a~~~gl~~~~~ 334 (335)
T COG1313 274 KPILRWIAENLGNDVRVNIMFQY-RPEYKAEEYPEINRRLTREEYEKALEYAEKLGLTNILV 334 (335)
T ss_pred HHHHHHHHHhCCCCeeEEehhhc-cchhhhhhchhhcccCCHHHHHHHHHHHHHcCCceeec
Confidence 345677776544333332 33 3422 2234678888999999999999999987543
No 146
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.02 E-value=1.2e-07 Score=85.98 Aligned_cols=197 Identities=10% Similarity=0.142 Sum_probs=129.8
Q ss_pred eCcccCCCCcCcccCC-CCCCCCChhHHHHHHHHHHHC-----------------CCcEEEEeeecCCCCCCCChhHHHH
Q psy2895 67 MGSICTRRCKFCNISH-GRPDPLDIEEPKKIAYTINKL-----------------KLNYVVITSVNRDDLHDGGSSHFVS 128 (293)
Q Consensus 67 ~t~~C~~~C~fC~~~~-~~~~~~~~eei~~~~~~~~~~-----------------G~~~i~l~gg~~~~l~~~~~~~~~~ 128 (293)
.+-||+.+|.||+... |-.+.++..||++.+..+.+. .++.|++-|-..| +. +.+.+.+
T Consensus 113 SQvGC~mgC~FCaTG~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMGMGEP-L~--NydnV~~ 189 (371)
T PRK14461 113 TQAGCGMGCVFCATGTLGLLRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMGMGEP-FA--NYDRWWQ 189 (371)
T ss_pred ccCCccCCCCcccCCCCCcccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEccCCc-hh--hHHHHHH
Confidence 3589999999998765 445789999999888666321 2567888775443 32 3455666
Q ss_pred HHHHHHhhC-CC---cEEEEEcCCCcCcHHHHHHHHHHcCCC-eeeecccc-chHHHhhcCC---CCCHHHHHHHHHHHH
Q psy2895 129 CIKHIRKLS-TK---IKIEILIPDFRNQINHVLKIFKQALPD-VLNHNIET-VPRLYKKVRP---GSDYKHSLNLLKNFK 199 (293)
Q Consensus 129 ll~~i~~~~-~~---~~i~~~~~~~~~~~~e~l~~l~~aG~~-~i~~~les-s~~~~~~i~~---~~~~e~~l~~i~~~~ 199 (293)
.++.+.... -+ -+|+++|.|... .+++|.+.++. .+.+++-+ .+++++++-| .++.++.+++++...
T Consensus 190 ai~il~d~~g~~is~R~ITVST~Givp----~I~~la~~~~~v~LAiSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~ 265 (371)
T PRK14461 190 AVERLHDPQGFNLGARSMTVSTVGLVK----GIRRLANERLPINLAISLHAPDDALRSELMPVNRRYPIADLMAATRDYI 265 (371)
T ss_pred HHHHhcCccccCcCCCceEEEeecchh----HHHHHHhcccCceEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHH
Confidence 666664421 11 267777766543 56677665432 46678877 5899998875 679999999988775
Q ss_pred HhCCCceee--EeEEeecCCCHHHHHHHHHHHHhCC-----CCEEEeecCCCCCCCccccccccChhHHHHHHHHHHHhc
Q psy2895 200 KLYPNILTK--SGIMVGLGENDEEILTVIHDMRNHN-----IDILTIGQYLMPSRLHLPVHRYLHPKFFEKFKKIAYKLG 272 (293)
Q Consensus 200 ~~~pgi~~~--~~~ivG~gEt~ed~~~~l~~l~~l~-----~~~i~i~~~~~p~~~~~a~~r~~~p~~~~~~~~~~~~~G 272 (293)
+. .|=.++ -.+|=|+.++.+|..++.++++.++ .-+|++-|| .|.+.. . ++-..++...++.+...+.|
T Consensus 266 ~~-t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~-Np~~~~-~-~~~ps~~~i~~F~~~L~~~g 341 (371)
T PRK14461 266 AK-TRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNLIPW-NPVPGT-P-LGRSERERVTTFQRILTDYG 341 (371)
T ss_pred Hh-hCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEEecC-CCCCCC-C-CCCCCHHHHHHHHHHHHHCC
Confidence 44 244444 3455577999999999999999872 123444433 343322 1 22234566788888888888
Q ss_pred cc
Q psy2895 273 FK 274 (293)
Q Consensus 273 ~~ 274 (293)
+.
T Consensus 342 i~ 343 (371)
T PRK14461 342 IP 343 (371)
T ss_pred ce
Confidence 75
No 147
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=98.94 E-value=9.2e-10 Score=87.27 Aligned_cols=81 Identities=22% Similarity=0.290 Sum_probs=52.1
Q ss_pred eCcccCCCCcCcccCCCCC----CCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEE
Q psy2895 67 MGSICTRRCKFCNISHGRP----DPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKI 142 (293)
Q Consensus 67 ~t~~C~~~C~fC~~~~~~~----~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i 142 (293)
.+++||.+|.||..+.... ..++.+.+.+.++.+...++..|.++||+| .+ ....+.+.++++.+++..+ ..+
T Consensus 11 ~t~~Cnl~C~yC~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~i~l~GGEP-ll-~~~~~~l~~i~~~~k~~~~-~~~ 87 (139)
T PF13353_consen 11 FTNGCNLRCKYCFNSEIWKFKRGKELSEEIIEEIIEELKNYGIKGIVLTGGEP-LL-HENYDELLEILKYIKEKFP-KKI 87 (139)
T ss_dssp EEC--SB--TT-TTCCCS-TT-SEEC-HHHHHHHCHHHCCCCCCEEEEECSTG-GG-HHSHHHHHHHHHHHHHTT--SEE
T ss_pred EcCcccccCcCcCCcccCcccccccccchhhhhhhhHHhcCCceEEEEcCCCe-ee-eccHhHHHHHHHHHHHhCC-CCe
Confidence 3788999999998766432 246777777777877778999999999995 23 1135889999999999865 245
Q ss_pred EEEcCCCc
Q psy2895 143 EILIPDFR 150 (293)
Q Consensus 143 ~~~~~~~~ 150 (293)
.+.+++..
T Consensus 88 ~~~tng~~ 95 (139)
T PF13353_consen 88 IILTNGYT 95 (139)
T ss_dssp EEEETT--
T ss_pred EEEECCCc
Confidence 55555443
No 148
>KOG2876|consensus
Probab=98.85 E-value=2.3e-09 Score=91.13 Aligned_cols=163 Identities=18% Similarity=0.284 Sum_probs=115.4
Q ss_pred eeeCcccCCCCcCcccCCCCC-----CCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCC
Q psy2895 65 MIMGSICTRRCKFCNISHGRP-----DPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTK 139 (293)
Q Consensus 65 ~~~t~~C~~~C~fC~~~~~~~-----~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~ 139 (293)
+..|..||.+|.||-.+.+++ +.++.++++.+++.....|++.+-|+||++ ... .++.+++..+... ++
T Consensus 15 islte~cnlrc~ycMpsegv~l~pk~~~lav~eilrl~~~F~~qgv~knrLtggep-tIr----~di~~i~~g~~~l-~g 88 (323)
T KOG2876|consen 15 ISLTEKCNLRCQYCMPSEGVPLKPKRKLLAVSEILRLAGLFAPQGVDKNRLTGGEP-LIR----QDIVPIVAGLSSL-PG 88 (323)
T ss_pred hhhhhccccccceechhcCCcCccchhhcchhhhHHhhhhhhHhhhhhhhhcCCCC-ccc----ccccchhhhhhcc-cc
Confidence 445799999999999988763 468899999999999999999999999995 332 2334444444432 23
Q ss_pred c-EEEEEcCCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCc---eeeEeEEee
Q psy2895 140 I-KIEILIPDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNI---LTKSGIMVG 214 (293)
Q Consensus 140 ~-~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi---~~~~~~ivG 214 (293)
+ .+.+.+++... ...+-.+.++|++.+++++++ ...-+..+.+...+..++..++.+.+. |. .++.-++=|
T Consensus 89 Lks~~ITtng~vl--~R~lp~lhkaglssiNiSldtl~~aKfa~~~rr~g~v~V~~~iq~a~~l--gy~pvkvn~v~~k~ 164 (323)
T KOG2876|consen 89 LKSIGITTNGLVL--ARLLPQLHKAGLSSINISLDTLVRAKFAKLTRRKGFVKVWASIQLAIEL--GYNPVKVNCVVMKG 164 (323)
T ss_pred hhhhceeccchhh--hhhhhHHHhhcccchhhhhhhhhHHHHHHHhhhccHHHHHHHHhHHhhh--CCCCcceeeEEEec
Confidence 2 34455555544 567778889999999999999 567777777777899999999999877 66 334434444
Q ss_pred cCCCHHHHHHHHHHHHhCCCCEEEe
Q psy2895 215 LGENDEEILTVIHDMRNHNIDILTI 239 (293)
Q Consensus 215 ~gEt~ed~~~~l~~l~~l~~~~i~i 239 (293)
+ +..++.+.+.+=+.-.+|...|
T Consensus 165 ~--n~~ev~Dfv~~tr~~p~DVrfI 187 (323)
T KOG2876|consen 165 L--NEDEVFDFVLLTRMRPLDVRFI 187 (323)
T ss_pred c--CCCcccceeeecCCCCcceEEE
Confidence 4 4445555555545555555445
No 149
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=98.83 E-value=5.6e-09 Score=80.61 Aligned_cols=83 Identities=22% Similarity=0.286 Sum_probs=49.6
Q ss_pred eCcccCCCCcCcccCCCC----CCCCChhHHHHHHHHHHHCCC--cEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCc
Q psy2895 67 MGSICTRRCKFCNISHGR----PDPLDIEEPKKIAYTINKLKL--NYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKI 140 (293)
Q Consensus 67 ~t~~C~~~C~fC~~~~~~----~~~~~~eei~~~~~~~~~~G~--~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~ 140 (293)
.|.+||.+|.||...... ...++.+++.+.++.+...+. ..|.|+||+| .+ ..+.+.+.++++.+++..|+.
T Consensus 4 ~t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~GGEP-ll-~~~~~~l~~~i~~~~~~~~~~ 81 (119)
T PF13394_consen 4 RTSGCNLRCSYCYNKSSWSPKKGEEMSIEELEEIIDELKEKGFRPSTVVFTGGEP-LL-YLNPEDLIELIEYLKERGPEI 81 (119)
T ss_dssp --S--S---TTTS-TTTSST-GGGS--HHHHHHHHHHHHHTT----EEEEESSSG-GG-STTHHHHHHHHCTSTT-----
T ss_pred ccCCcCCCCccCCcCccCCCccCCcccHhHHHHHHHHHHhcCCceEEEEEECCCC-cc-ccCHHHHHHHHHHHHhhCCCc
Confidence 489999999999985422 246788999999988888776 5699999996 22 223577899999999887777
Q ss_pred EEEEEcCCCcC
Q psy2895 141 KIEILIPDFRN 151 (293)
Q Consensus 141 ~i~~~~~~~~~ 151 (293)
.+.+.|+++..
T Consensus 82 ~i~i~TNg~~~ 92 (119)
T PF13394_consen 82 KIRIETNGTLP 92 (119)
T ss_dssp EEEEEE-STTH
T ss_pred eEEEEeCCeec
Confidence 88888876553
No 150
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=98.82 E-value=4.5e-07 Score=80.78 Aligned_cols=169 Identities=16% Similarity=0.166 Sum_probs=106.8
Q ss_pred CcccCCCCcCcccCCCC---C---CCCChhH-HHHHHHHH-HHCCCcEEEEeeec-CCCCCCC--ChhHHHHHHHHHHhh
Q psy2895 68 GSICTRRCKFCNISHGR---P---DPLDIEE-PKKIAYTI-NKLKLNYVVITSVN-RDDLHDG--GSSHFVSCIKHIRKL 136 (293)
Q Consensus 68 t~~C~~~C~fC~~~~~~---~---~~~~~ee-i~~~~~~~-~~~G~~~i~l~gg~-~~~l~~~--~~~~~~~ll~~i~~~ 136 (293)
-.||.+.|.||+..... + ..+..++ +.+.++.- .+.+.+...+..|. .+.+... ...-...+++.+.+.
T Consensus 36 y~GC~h~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l~~el~~~~~k~~~i~is~~TDpyqp~E~~~~ltR~ilei~~~~ 115 (297)
T COG1533 36 YRGCSHGCIYCYARPMHGYLPKSPTKVNVKENLLELLERELRKPGPKRTVIAISSVTDPYQPIEKEYRLTRKILEILLKY 115 (297)
T ss_pred cCCCCCCCceeecccccccccCCCceeeechhHHHHHHHHHhhccCCceEEEEecCCCCCCcchHHHHHHHHHHHHHHHc
Confidence 37999999999986421 1 1234443 66666544 33455544333333 2333221 111122233333333
Q ss_pred CCCcEEEEEc-CCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCC-CHHHHHHHHHHHHHhCCCceeeEeEEe
Q psy2895 137 STKIKIEILI-PDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGS-DYKHSLNLLKNFKKLYPNILTKSGIMV 213 (293)
Q Consensus 137 ~~~~~i~~~~-~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~-~~e~~l~~i~~~~~~~pgi~~~~~~iv 213 (293)
+..+.+.| +.+..+.-+.+..++.-+.-.+.+++.+ .+++.+.+-|+- ++++++++++.+.++ |+++...+--
T Consensus 116 --~~~v~I~TKS~lv~RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~ea--Gi~~~v~v~P 191 (297)
T COG1533 116 --GFPVSIVTKSALVLRDLDLLLELAERGKVRVAVSITTLDEELAKILEPRAPSPEERLEALKELSEA--GIPVGLFVAP 191 (297)
T ss_pred --CCcEEEEECCcchhhhHHHHHhhhhccceEEEEEeecCcHHHHHhcCCCCcCHHHHHHHHHHHHHC--CCeEEEEEec
Confidence 34677766 3333221566777766665667788877 467888888754 899999999999999 9987655433
Q ss_pred ec-CCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 214 GL-GENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 214 G~-gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
=+ +.|++|+.+.+..+.+.|+..+...
T Consensus 192 IiP~~~d~e~e~~l~~~~~ag~~~v~~~ 219 (297)
T COG1533 192 IIPGLNDEELERILEAAAEAGARVVVYG 219 (297)
T ss_pred ccCCCChHHHHHHHHHHHHcCCCeeEee
Confidence 34 7788999999999999999887664
No 151
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=98.73 E-value=1.6e-07 Score=75.16 Aligned_cols=137 Identities=15% Similarity=0.197 Sum_probs=97.2
Q ss_pred CcccCCCCcCcccCCCC------CCCCChhHHHHHHHHHH-HCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCc
Q psy2895 68 GSICTRRCKFCNISHGR------PDPLDIEEPKKIAYTIN-KLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKI 140 (293)
Q Consensus 68 t~~C~~~C~fC~~~~~~------~~~~~~eei~~~~~~~~-~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~ 140 (293)
+-|||..|.||.....+ ..+++++++.+...++. +.|...+-++|++| .+ ..+++.++|+.+.+ -
T Consensus 48 ~VGCnl~CayCw~y~r~~~~~rag~f~~P~eVaeRL~ei~K~~g~d~vRiSG~EP-~l---~~EHvlevIeLl~~----~ 119 (228)
T COG5014 48 TVGCNLLCAYCWNYFRNLRPKRAGDFLSPEEVAERLLEISKKRGCDLVRISGAEP-IL---GREHVLEVIELLVN----N 119 (228)
T ss_pred ccccceeeHHhhhhhhcCCccccccccCHHHHHHHHHHHHHhcCCcEEEeeCCCc-cc---cHHHHHHHHHhccC----c
Confidence 46999999999875422 24689999998887775 46999999999995 33 25889888887643 2
Q ss_pred EEEEEcCCCc--CcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCC--CCCHHHHHHHHHHHHHhCCCceeeEeEEeec
Q psy2895 141 KIEILIPDFR--NQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRP--GSDYKHSLNLLKNFKKLYPNILTKSGIMVGL 215 (293)
Q Consensus 141 ~i~~~~~~~~--~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~--~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~ 215 (293)
..-+-|+|++ -+ ...++.|...---.+.+++.+ .++-+.+|.. +.-|.--+++++.+.+. |+.+..-++.++
T Consensus 120 tFvlETNG~~~g~d-rslv~el~nr~nv~vRVsvKG~dpesF~kIT~asp~~F~~QL~aLr~L~~~--g~rf~pA~~~~f 196 (228)
T COG5014 120 TFVLETNGLMFGFD-RSLVDELVNRLNVLVRVSVKGWDPESFEKITGASPEYFRYQLKALRHLHGK--GHRFWPAVVYDF 196 (228)
T ss_pred eEEEEeCCeEEecC-HHHHHHHhcCCceEEEEEecCCCHHHHHHHhcCChHHHHHHHHHHHHHHhc--Cceeeehhhhcc
Confidence 4555566432 12 567777754322235567778 6888888762 22377788999999998 998877788877
No 152
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=98.68 E-value=3.6e-06 Score=75.64 Aligned_cols=195 Identities=15% Similarity=0.176 Sum_probs=121.6
Q ss_pred CcccCCCCcCcccCC-CCCCCCChhHHHHHHHHHHH-CC------CcEEEEeeecCCCCCCCChhHHHHHHHHHHhh-CC
Q psy2895 68 GSICTRRCKFCNISH-GRPDPLDIEEPKKIAYTINK-LK------LNYVVITSVNRDDLHDGGSSHFVSCIKHIRKL-ST 138 (293)
Q Consensus 68 t~~C~~~C~fC~~~~-~~~~~~~~eei~~~~~~~~~-~G------~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~-~~ 138 (293)
.-||+..|+||+... |..+-++..||++.+..+.+ .| +..|++-|-..|.+ +++.+...++.+... +.
T Consensus 108 QvGC~~~C~FCaTg~~G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGEPl~---N~dnV~~a~~i~~~~~G~ 184 (349)
T COG0820 108 QVGCPVGCTFCATGQGGLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEPLL---NLDNVVKALEIINDDEGL 184 (349)
T ss_pred CCCcCCCCCeeccccccceeccCHHHHHHHHHHHHHhcCccccceeeeEEEecCCchhh---hHHHHHHHHHhhcCcccc
Confidence 589999999999876 44577999999998887653 22 44577766544422 366777777766632 22
Q ss_pred Cc---EEEEEcCCCcCcHHHHHHHHHHcCCC-eeeecccc-chHHHhhcCC---CCCHHHHHHHHHHHHHhCCCceeeE-
Q psy2895 139 KI---KIEILIPDFRNQINHVLKIFKQALPD-VLNHNIET-VPRLYKKVRP---GSDYKHSLNLLKNFKKLYPNILTKS- 209 (293)
Q Consensus 139 ~~---~i~~~~~~~~~~~~e~l~~l~~aG~~-~i~~~les-s~~~~~~i~~---~~~~e~~l~~i~~~~~~~pgi~~~~- 209 (293)
++ +++++|+|+.. .+.+|.+..++ .+.+++-+ .+++.+.+-| .++.++.+++++.-.+. .|-.++-
T Consensus 185 ~ls~R~iTvSTsGi~~----~I~~l~~~~~~v~LAiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~-t~~rVt~E 259 (349)
T COG0820 185 GLSKRRITVSTSGIVP----RIRKLADEQLGVALAISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEK-SGRRVTFE 259 (349)
T ss_pred cccceEEEEecCCCch----hHHHHHhhcCCeEEEEecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhc-cCceEEEE
Confidence 22 46677767654 45555532222 36678777 5788887764 56888888888776554 2444443
Q ss_pred -eEEeecCCCHHHHHHHHHHHHhCCCCEEEeecCCCCCCCccccccccChhHHHHHHHHHHHhccc
Q psy2895 210 -GIMVGLGENDEEILTVIHDMRNHNIDILTIGQYLMPSRLHLPVHRYLHPKFFEKFKKIAYKLGFK 274 (293)
Q Consensus 210 -~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~~a~~r~~~p~~~~~~~~~~~~~G~~ 274 (293)
.++=|..++.++..+++++++.+.. ++.+-|| .|.+..- +.--..+...++.+.....|+.
T Consensus 260 Y~Ll~~VND~~e~A~~L~~ll~~~~~-~VNLIP~-Np~~~~~--y~r~~~~~i~~F~~~L~~~gv~ 321 (349)
T COG0820 260 YVLLDGVNDSLEHAKELAKLLKGIPC-KVNLIPY-NPVPGSD--YERSSKERIRKFLKILKKAGVL 321 (349)
T ss_pred eeecccccCCHHHHHHHHHHhcCCCc-eEEEeec-CCCCCCC--ccCCcHHHHHHHHHHHHhCCee
Confidence 3444668889999999999888764 3333222 2433321 1112223455666666666664
No 153
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=98.64 E-value=2.3e-07 Score=75.03 Aligned_cols=77 Identities=14% Similarity=0.248 Sum_probs=53.7
Q ss_pred CcccCCCCcCcccCCCC----CCCCChhHHHHHHHHHHHCCC--cEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcE
Q psy2895 68 GSICTRRCKFCNISHGR----PDPLDIEEPKKIAYTINKLKL--NYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIK 141 (293)
Q Consensus 68 t~~C~~~C~fC~~~~~~----~~~~~~eei~~~~~~~~~~G~--~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~ 141 (293)
-.|||.+|.||..+... ...++.+.+.+.++.+...+. ..|+|+||+| +...+.+.+.++++++++..++..
T Consensus 23 ~~GCnl~C~~C~n~~~~~~~~g~~~~~~~~~~il~~~~~~~~~~~gvt~sGGEP--l~~~~~~~l~~l~~~~k~~~~~~~ 100 (154)
T PRK11121 23 VSGCVHQCPGCYNKSTWRLNSGHPFTKEMEDQIIADLNDTRIKRQGLSLSGGDP--LHPQNVPDILKLVQRVKAECPGKD 100 (154)
T ss_pred cCCCCCcCcCCCChhhccCCCCcccCHHHHHHHHHHHHHhCCCCCcEEEECCCc--cchhhHHHHHHHHHHHHHHCCCCC
Confidence 48999999999887532 123565555555666555554 5799999996 322245778889999988777667
Q ss_pred EEEEc
Q psy2895 142 IEILI 146 (293)
Q Consensus 142 i~~~~ 146 (293)
|.+++
T Consensus 101 i~~~t 105 (154)
T PRK11121 101 IWVWT 105 (154)
T ss_pred EEEec
Confidence 76655
No 154
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=98.63 E-value=2.6e-06 Score=74.88 Aligned_cols=147 Identities=13% Similarity=0.164 Sum_probs=113.9
Q ss_pred CCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCC
Q psy2895 86 DPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALP 165 (293)
Q Consensus 86 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~ 165 (293)
..++.++..+.++.+.+.|+..|-++++.++.... ......++++.+++..++..+.+.++ .. .+.++.++++|+
T Consensus 14 ~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p-~~~~~~~~i~~l~~~~~~~~~~~l~~--~~--~~~i~~a~~~g~ 88 (265)
T cd03174 14 ATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVP-QMEDDWEVLRAIRKLVPNVKLQALVR--NR--EKGIERALEAGV 88 (265)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeccCcCccccc-cCCCHHHHHHHHHhccCCcEEEEEcc--Cc--hhhHHHHHhCCc
Confidence 45799999999999999999999999887632211 12356678888888766566655443 11 567899999999
Q ss_pred CeeeeccccchHHHhhc--CCC--CCHHHHHHHHHHHHHhCCCceeeEeEEeecC--CCHHHHHHHHHHHHhCCCCEEEe
Q psy2895 166 DVLNHNIETVPRLYKKV--RPG--SDYKHSLNLLKNFKKLYPNILTKSGIMVGLG--ENDEEILTVIHDMRNHNIDILTI 239 (293)
Q Consensus 166 ~~i~~~less~~~~~~i--~~~--~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~g--Et~ed~~~~l~~l~~l~~~~i~i 239 (293)
+.+.+.+.+++ .+.+. +++ ..++..++.++.+++. |+.+...++.-.+ .+.+++.+.++.+.++|++.+.+
T Consensus 89 ~~i~i~~~~s~-~~~~~~~~~~~~~~~~~~~~~i~~a~~~--G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l 165 (265)
T cd03174 89 DEVRIFDSASE-THSRKNLNKSREEDLENAEEAIEAAKEA--GLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISL 165 (265)
T ss_pred CEEEEEEecCH-HHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 99999887765 44433 333 3688899999999999 9988887766667 99999999999999999998877
Q ss_pred e
Q psy2895 240 G 240 (293)
Q Consensus 240 ~ 240 (293)
.
T Consensus 166 ~ 166 (265)
T cd03174 166 K 166 (265)
T ss_pred c
Confidence 3
No 155
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=98.59 E-value=5.8e-07 Score=71.94 Aligned_cols=96 Identities=15% Similarity=0.117 Sum_probs=66.2
Q ss_pred EeeeeCcccCCCCcCcccCCCC----CCCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCC
Q psy2895 63 TFMIMGSICTRRCKFCNISHGR----PDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLST 138 (293)
Q Consensus 63 ~~~~~t~~C~~~C~fC~~~~~~----~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~ 138 (293)
.++++..|||.+|.||..+... ...++.+++.+.+++... .+..|+|+||+ +. .+.+.++++.+++.
T Consensus 17 ~~~vfl~GCnlrC~~C~n~~~~~~~~g~~lt~eel~~~I~~~~~-~~~gVt~SGGE---l~---~~~l~~ll~~lk~~-- 87 (147)
T TIGR02826 17 SLAFYITGCPLGCKGCHSPESWHLSEGTKLTPEYLTKTLDKYRS-LISCVLFLGGE---WN---REALLSLLKIFKEK-- 87 (147)
T ss_pred EEEEEeCCCCCCCCCCCChHHcCCCCCcCCCHHHHHHHHHHhCC-CCCEEEEechh---cC---HHHHHHHHHHHHHC--
Confidence 3344567999999999987532 246899999999887653 36789999999 31 46789999999987
Q ss_pred CcEEEEEcCCCcCcHHHHHHHHHHcCCCeeeec
Q psy2895 139 KIKIEILIPDFRNQINHVLKIFKQALPDVLNHN 171 (293)
Q Consensus 139 ~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~ 171 (293)
+..+.+.|+++. ++..+.+.+ -+|.+..+
T Consensus 88 Gl~i~l~Tg~~~---~~~~~~il~-~iD~l~~g 116 (147)
T TIGR02826 88 GLKTCLYTGLEP---KDIPLELVQ-HLDYLKTG 116 (147)
T ss_pred CCCEEEECCCCC---HHHHHHHHH-hCCEEEEC
Confidence 456777775433 334444432 36665544
No 156
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=98.50 E-value=8.9e-07 Score=71.61 Aligned_cols=76 Identities=13% Similarity=0.216 Sum_probs=54.2
Q ss_pred CceeEeeeeCcccCCCCcCcccCCCC----CCCCChhHHHHHHHHHHHCC-CcEEEEeeecCCCCCCCChhHHHHHHHHH
Q psy2895 59 RGVATFMIMGSICTRRCKFCNISHGR----PDPLDIEEPKKIAYTINKLK-LNYVVITSVNRDDLHDGGSSHFVSCIKHI 133 (293)
Q Consensus 59 ~~~~~~~~~t~~C~~~C~fC~~~~~~----~~~~~~eei~~~~~~~~~~G-~~~i~l~gg~~~~l~~~~~~~~~~ll~~i 133 (293)
++..+.+ +..|||.+|.||..+... ...++.+++.+.++.+.+.+ +..|.|+||+| +...+.+.+.++++.+
T Consensus 14 ~G~r~~i-f~~gCnl~C~~C~n~~~~~~~~g~~~~~~~~~~i~~~l~~~~~~~gVt~sGGEP--llq~~~~~l~~ll~~~ 90 (154)
T TIGR02491 14 EGIRVSL-FVAGCKHHCEGCFNKETWNFNGGKEFTEALEKEIIRDLNDNPLIDGLTLSGGDP--LYPRNVEELIELVKKI 90 (154)
T ss_pred CCcEEEE-EECCCCCCCcCCCcccccCCCCCCcCCHHHHHHHHHHHHhcCCcCeEEEeChhh--CCCCCHHHHHHHHHHH
Confidence 3444433 247899999999987632 24688777777777777665 67899999996 3222357899999999
Q ss_pred HhhC
Q psy2895 134 RKLS 137 (293)
Q Consensus 134 ~~~~ 137 (293)
++..
T Consensus 91 k~~~ 94 (154)
T TIGR02491 91 KAEF 94 (154)
T ss_pred HHhC
Confidence 8764
No 157
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=98.44 E-value=1.1e-05 Score=72.27 Aligned_cols=160 Identities=12% Similarity=0.198 Sum_probs=108.3
Q ss_pred eeeeCcccCCCCcCcccCCC--C-CCCCChhHHHHHHHHHHHC-CCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCC
Q psy2895 64 FMIMGSICTRRCKFCNISHG--R-PDPLDIEEPKKIAYTINKL-KLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTK 139 (293)
Q Consensus 64 ~~~~t~~C~~~C~fC~~~~~--~-~~~~~~eei~~~~~~~~~~-G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~ 139 (293)
.+..|++|.-.|.||.-... . ...++.+++...++.+++. -+++|.|+||++-.++ ...+..+++.+++. |+
T Consensus 114 Lll~t~~C~vyCRyCfRr~~~~~~~~~~~~~~~~~al~YIa~hPeI~eVllSGGDPL~ls---~~~L~~ll~~L~~I-pH 189 (369)
T COG1509 114 LLLVTGVCAVYCRYCFRRRFVGQDNQGFNKEEWDKALDYIAAHPEIREVLLSGGDPLSLS---DKKLEWLLKRLRAI-PH 189 (369)
T ss_pred EEEecCcccceeeecccccccccccccCCHHHHHHHHHHHHcCchhheEEecCCCccccC---HHHHHHHHHHHhcC-Cc
Confidence 34469999999999986652 2 2337888988888888766 5799999999973333 46788888888875 33
Q ss_pred c-EEEEEc--C----CCcCcHHHHHHHHHHcCCCeeee-ccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceee--E
Q psy2895 140 I-KIEILI--P----DFRNQINHVLKIFKQALPDVLNH-NIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTK--S 209 (293)
Q Consensus 140 ~-~i~~~~--~----~~~~~~~e~l~~l~~aG~~~i~~-~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~--~ 209 (293)
+ .|++.| | .=++ ++..+.|++.+...+-. .++...+ =.....++++.++++ |+.+. +
T Consensus 190 v~iiRi~TR~pvv~P~RIt--~~L~~~l~~~~~~v~~~tH~NHp~E---------it~e~~~A~~~L~~a--Gv~l~NQs 256 (369)
T COG1509 190 VKIIRIGTRLPVVLPQRIT--DELCEILGKSRKPVWLVTHFNHPNE---------ITPEAREACAKLRDA--GVPLLNQS 256 (369)
T ss_pred eeEEEeecccceechhhcc--HHHHHHHhccCceEEEEcccCChhh---------cCHHHHHHHHHHHHc--Cceeecch
Confidence 3 466654 3 2233 67777776643322111 1111111 123456888899999 99754 4
Q ss_pred eEEeecCCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 210 GIMVGLGENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 210 ~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
-++=|.+++.+-+.++++.+.+.|+.=-+++
T Consensus 257 VLLrGVND~~evl~~L~~~L~~~gV~PYYl~ 287 (369)
T COG1509 257 VLLRGVNDDPEVLKELSRALFDAGVKPYYLH 287 (369)
T ss_pred heecccCCCHHHHHHHHHHHHHcCCcceEEe
Confidence 4566889999999999999999997644444
No 158
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=98.38 E-value=1e-05 Score=73.71 Aligned_cols=190 Identities=19% Similarity=0.197 Sum_probs=124.3
Q ss_pred cccCCC---CcCcccCCC--CCCCCChhHHHHHHHHHHHCCCc-----EEEEeeecCCCCCCCChhHHHHHHHHHHhhCC
Q psy2895 69 SICTRR---CKFCNISHG--RPDPLDIEEPKKIAYTINKLKLN-----YVVITSVNRDDLHDGGSSHFVSCIKHIRKLST 138 (293)
Q Consensus 69 ~~C~~~---C~fC~~~~~--~~~~~~~eei~~~~~~~~~~G~~-----~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~ 138 (293)
.-|... |.||+.... +....++..|.++..+ ++|.+ .+..+++. + .+. ..++.+..+..+..++
T Consensus 35 ~~c~~~~~~C~~cy~~v~~~~~~~~~~~~v~~e~~~--~lg~~~e~~~~~~~~~~~-d-~~c--~p~le~~~~r~~~~~~ 108 (414)
T COG1625 35 KDCIPYRFGCDDCYLSVNELDTGFIPPLMVEKEPDE--DLGLEFEEVLGAKQCGNG-D-TFC--YPDLEPRGRRARLYYK 108 (414)
T ss_pred CcCCCccccccceeeEEecccCCCCCHhHhhccccc--ccccccccccceeecCCC-C-ccc--CcchhhhhhHHHhhcC
Confidence 345554 888887542 2244566666655432 22332 23333332 2 222 3577888888888764
Q ss_pred CcEEEE--EcC-CCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEee
Q psy2895 139 KIKIEI--LIP-DFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVG 214 (293)
Q Consensus 139 ~~~i~~--~~~-~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG 214 (293)
+-++++ .+. ++.. .+..+.+-++|++-+++++.| .+++++++.+....++.++.++++.++ ++.+.+.+++-
T Consensus 109 d~~~rL~~tsG~~~~l--t~~~~~i~~~gvdev~~SVhtT~p~lR~klm~n~~A~~~le~L~~f~~~--~~~v~a~iVl~ 184 (414)
T COG1625 109 DDDIRLSFTSGSGFTL--TNRAERIIDAGVDEVYFSVHTTNPELRAKLMKNPNAEQLLELLRRFAER--CIEVHAQIVLC 184 (414)
T ss_pred Cccceeeeeeccceec--cchHHHHHHcCCCeeEEEEeeCCHHHHHHHhcCCcHHHHHHHHHHHHHh--hhheeeEEEEc
Confidence 444555 332 3333 456677889999999999998 699999988888999999999999999 98888888774
Q ss_pred cCCC-HHHHHHHHHHHHhCCCCEEEeecCCCCCCCc---cccccccChhHHHHHHHHHH
Q psy2895 215 LGEN-DEEILTVIHDMRNHNIDILTIGQYLMPSRLH---LPVHRYLHPKFFEKFKKIAY 269 (293)
Q Consensus 215 ~gEt-~ed~~~~l~~l~~l~~~~i~i~~~~~p~~~~---~a~~r~~~p~~~~~~~~~~~ 269 (293)
=|-+ -+++.+|++-|.++|+..+.+. ...|..-+ -+..+-..|+++..+++..+
T Consensus 185 PGvNdge~L~kT~~dL~~~g~~~~~~~-~~~pvGlt~~n~~~i~~~t~~~l~~~k~i~r 242 (414)
T COG1625 185 PGVNDGEELEKTLEDLEEWGAHEVILM-RVVPVGLTRYNRPGIRPPTPHELEEFKEIVR 242 (414)
T ss_pred CCcCcHHHHHHHHHHHHHhCcCceeEE-EeecceeeecCCCCCCCCCHHHHHHHHHHHH
Confidence 4655 7899999999999999877765 23343210 01233445666655554433
No 159
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=98.09 E-value=0.00028 Score=64.99 Aligned_cols=140 Identities=17% Similarity=0.150 Sum_probs=103.9
Q ss_pred cccCCCCC---CCCChhHHHHHHHHHHHC---CCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCC-c
Q psy2895 78 CNISHGRP---DPLDIEEPKKIAYTINKL---KLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDF-R 150 (293)
Q Consensus 78 C~~~~~~~---~~~~~eei~~~~~~~~~~---G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~-~ 150 (293)
|-+++... -+.+.|+|.+.++.+... +...|.++||++ +++ +++.++++.+++.+- .+|.+.|+|. +
T Consensus 78 CFa~A~~ag~vYEpt~eqi~~Ml~~lk~e~p~~~~aIq~tGGEP-Tvr----~DL~eiv~~a~e~g~-~hVqinTnGirl 151 (475)
T COG1964 78 CFAYAEEAGYIYEPTLEQIREMLRNLKKEHPVGANAVQFTGGEP-TLR----DDLIEIIKIAREEGY-DHVQLNTNGIRL 151 (475)
T ss_pred CcCchhhcCcccCCCHHHHHHHHHHHHhcCCCCCceeEecCCCc-cch----hhHHHHHHHHhhcCc-cEEEEccCceee
Confidence 76666432 367899999999998765 567899999995 453 689999999988742 3788888743 2
Q ss_pred CcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec--CCCHHHHHHHHH
Q psy2895 151 NQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL--GENDEEILTVIH 227 (293)
Q Consensus 151 ~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~--gEt~ed~~~~l~ 227 (293)
.+..+..+.|++||++.+.++.++ +++.+.+. .-++-.+++.++++ |+.. .-++.++ |-++.++-..++
T Consensus 152 A~~~~~~~~l~~ag~~tvYlsFDG~~e~~~~~~-----~~eIk~alen~r~~--g~~s-vVLVptl~rgvNd~~lG~iir 223 (475)
T COG1964 152 AFDPEYVKKLREAGVNTVYLSFDGVTPKTNWKN-----HWEIKQALENCRKA--GLPS-VVLVPTLIRGVNDHELGAIIR 223 (475)
T ss_pred ccCHHHHHHHHhcCCcEEEEecCCCCCCchhhH-----hhhhHHHHHHHHhc--CCCc-EEEEeehhcccChHHHHHHHH
Confidence 222789999999999999999998 67776655 22233478888888 8742 3345566 888889989998
Q ss_pred HHHh
Q psy2895 228 DMRN 231 (293)
Q Consensus 228 ~l~~ 231 (293)
+...
T Consensus 224 fa~~ 227 (475)
T COG1964 224 FALN 227 (475)
T ss_pred HHHh
Confidence 8763
No 160
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=2.7e-05 Score=66.20 Aligned_cols=81 Identities=16% Similarity=0.249 Sum_probs=54.4
Q ss_pred CceeEeeeeCcccCCCCcCcccCCCC-------CCCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHH
Q psy2895 59 RGVATFMIMGSICTRRCKFCNISHGR-------PDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIK 131 (293)
Q Consensus 59 ~~~~~~~~~t~~C~~~C~fC~~~~~~-------~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~ 131 (293)
+....|+- ..|||.+|.+|..+... ...++.++|++.++.+. .+.+.|+||||+| +. .+.+.++++
T Consensus 21 Gr~~vFVR-~~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~-~~~~~V~lTGGEP--~~---~~~l~~Ll~ 93 (212)
T COG0602 21 GRPSVFVR-FAGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLG-YKARGVSLTGGEP--LL---QPNLLELLE 93 (212)
T ss_pred cceeEEEE-cCCCCCCCCCCCChhhhcccccCCCCccCHHHHHHHHHhcC-CCcceEEEeCCcC--CC---cccHHHHHH
Confidence 33455554 57999999999976421 23577788887766542 2455899999996 32 236788888
Q ss_pred HHHhhCCCcEEEEEcCC
Q psy2895 132 HIRKLSTKIKIEILIPD 148 (293)
Q Consensus 132 ~i~~~~~~~~i~~~~~~ 148 (293)
.+++. ++++.+-|++
T Consensus 94 ~l~~~--g~~~~lETng 108 (212)
T COG0602 94 LLKRL--GFRIALETNG 108 (212)
T ss_pred HHHhC--CceEEecCCC
Confidence 88876 4566665553
No 161
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=97.78 E-value=0.0031 Score=55.47 Aligned_cols=141 Identities=18% Similarity=0.168 Sum_probs=99.3
Q ss_pred CCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCC
Q psy2895 86 DPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALP 165 (293)
Q Consensus 86 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~ 165 (293)
..++.++.+++++.+.+.|++.|-+++ | .. .+...+.++.+.+......+.... ..+ .+-++...++|+
T Consensus 17 ~~~s~~~k~~i~~~L~~~Gv~~IEvG~--P-~~----~~~~~~~~~~l~~~~~~~~v~~~~---r~~-~~di~~a~~~g~ 85 (262)
T cd07948 17 AFFDTEDKIEIAKALDAFGVDYIELTS--P-AA----SPQSRADCEAIAKLGLKAKILTHI---RCH-MDDARIAVETGV 85 (262)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEC--C-CC----CHHHHHHHHHHHhCCCCCcEEEEe---cCC-HHHHHHHHHcCc
Confidence 468999999999999999999887764 2 22 134455556665433222332221 111 556788888999
Q ss_pred CeeeeccccchHHHhh-cCC--CCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEe
Q psy2895 166 DVLNHNIETVPRLYKK-VRP--GSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTI 239 (293)
Q Consensus 166 ~~i~~~less~~~~~~-i~~--~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i 239 (293)
+.+.+.+-.|+...+. +++ ....+...+.++.+++. |+.+..++.-.++-+++.+.+.++.+.++|++.+.+
T Consensus 86 ~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~--G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l 160 (262)
T cd07948 86 DGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSK--GIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVGI 160 (262)
T ss_pred CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 9998876556544432 332 22455577777999999 999988888777778999999999999999998766
No 162
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=97.75 E-value=0.0053 Score=53.90 Aligned_cols=142 Identities=11% Similarity=0.072 Sum_probs=99.8
Q ss_pred CCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCC
Q psy2895 86 DPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALP 165 (293)
Q Consensus 86 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~ 165 (293)
..++.++..+.++.+.+.|++.|-++ . |.+. +.=.+.++.+.+..++..+..... .. .+.++...++|+
T Consensus 15 ~~~~~~~k~~i~~~L~~~Gv~~iE~g--~-p~~~----~~~~e~~~~l~~~~~~~~~~~~~r--~~--~~~v~~a~~~g~ 83 (259)
T cd07939 15 VAFSREEKLAIARALDEAGVDEIEVG--I-PAMG----EEEREAIRAIVALGLPARLIVWCR--AV--KEDIEAALRCGV 83 (259)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEe--c-CCCC----HHHHHHHHHHHhcCCCCEEEEecc--CC--HHHHHHHHhCCc
Confidence 35899999999999999999988764 2 2222 122356677766544444444331 12 556777788999
Q ss_pred Ceeeeccccch-HHHhhcCCC--CCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 166 DVLNHNIETVP-RLYKKVRPG--SDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 166 ~~i~~~less~-~~~~~i~~~--~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
+.+.+.+-.|+ ...+.++.+ ...+...+.++.+++. |+.+..+...+..-+++.+.+.++.+.+.|++.+.+.
T Consensus 84 ~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~--G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~ 159 (259)
T cd07939 84 TAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDR--GLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFA 159 (259)
T ss_pred CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeC
Confidence 99988765554 334455532 2456667888899999 9988766666556779999999999999999988763
No 163
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.65 E-value=0.002 Score=59.99 Aligned_cols=77 Identities=17% Similarity=0.195 Sum_probs=65.1
Q ss_pred HHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCH-HHHHHHHHHHHh
Q psy2895 154 NHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGEND-EEILTVIHDMRN 231 (293)
Q Consensus 154 ~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~-ed~~~~l~~l~~ 231 (293)
++.++++.+.+++-+++++.+ .+++.++|-+....+++++.++++.++ |+.+.+.+++=-|-+. +++..|+..|.+
T Consensus 128 ~~d~~RI~~~~lspl~iSVhat~p~lR~~ll~n~~a~~il~~l~~l~~~--~I~~h~qiVlcPGiNDg~~L~~Ti~dL~~ 205 (433)
T TIGR03279 128 PAEWQRIEQLRLSPLYVSVHATEPSLRARLLKNPRAGLILEQLKWFQER--RLQLHAQVVVCPGINDGKHLERTLRDLAQ 205 (433)
T ss_pred HHHHHHHHHcCCCCEEEEEecCCHHHHHHHhCCCCHHHHHHHHHHHHHc--CCeEEEEEEEcCCcCCHHHHHHHHHHHHh
Confidence 677888888999999999999 689999887666889999999999999 9988877655334444 689999999999
Q ss_pred C
Q psy2895 232 H 232 (293)
Q Consensus 232 l 232 (293)
+
T Consensus 206 ~ 206 (433)
T TIGR03279 206 F 206 (433)
T ss_pred h
Confidence 8
No 164
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=97.65 E-value=0.0068 Score=54.05 Aligned_cols=145 Identities=11% Similarity=0.106 Sum_probs=97.9
Q ss_pred CCCChhHHHHHHHHHHHCCCcEEEEeeecCCC-CCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcC
Q psy2895 86 DPLDIEEPKKIAYTINKLKLNYVVITSVNRDD-LHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQAL 164 (293)
Q Consensus 86 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~-l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG 164 (293)
..+++++.+++++.+.+.|++.|-+++-..|. ++. ..+-.+.++.+.+. ++..+..+.+ + .+-+++..++|
T Consensus 21 ~~~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~--~~d~~e~~~~l~~~-~~~~~~~l~~----~-~~~ie~A~~~g 92 (287)
T PRK05692 21 RFIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQ--MADAAEVMAGIQRR-PGVTYAALTP----N-LKGLEAALAAG 92 (287)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccc--cccHHHHHHhhhcc-CCCeEEEEec----C-HHHHHHHHHcC
Confidence 35899999999999999999988765332222 222 11225667777653 4445554443 2 45567777899
Q ss_pred CCeeeeccccchHH-HhhcCCC--CCHHHHHHHHHHHHHhCCCceeeEeEEeecC------CCHHHHHHHHHHHHhCCCC
Q psy2895 165 PDVLNHNIETVPRL-YKKVRPG--SDYKHSLNLLKNFKKLYPNILTKSGIMVGLG------ENDEEILTVIHDMRNHNID 235 (293)
Q Consensus 165 ~~~i~~~less~~~-~~~i~~~--~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~g------Et~ed~~~~l~~l~~l~~~ 235 (293)
++.+.+.+-.|+.. .++++++ ...+...+.++.+++. |+.+...+...++ -+++.+.+.++.+.+.|++
T Consensus 93 ~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~--g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d 170 (287)
T PRK05692 93 ADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQA--GVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCY 170 (287)
T ss_pred CCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCc
Confidence 99999876556543 2234322 2344567788889999 9987766655442 2678899999999999999
Q ss_pred EEEee
Q psy2895 236 ILTIG 240 (293)
Q Consensus 236 ~i~i~ 240 (293)
.|.+-
T Consensus 171 ~i~l~ 175 (287)
T PRK05692 171 EISLG 175 (287)
T ss_pred EEEec
Confidence 88763
No 165
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=97.63 E-value=0.0073 Score=55.13 Aligned_cols=138 Identities=14% Similarity=0.126 Sum_probs=97.1
Q ss_pred CCCChhHHHHHHHHHHHCCCcEEEEeeecC---CCC--CCCChhHHHHHHHHHHhhCCCcEEEEE-cCCCcCcHHHHHHH
Q psy2895 86 DPLDIEEPKKIAYTINKLKLNYVVITSVNR---DDL--HDGGSSHFVSCIKHIRKLSTKIKIEIL-IPDFRNQINHVLKI 159 (293)
Q Consensus 86 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~---~~l--~~~~~~~~~~ll~~i~~~~~~~~i~~~-~~~~~~~~~e~l~~ 159 (293)
..++.+++.++++.+.+.|+..|-++.|+. .++ ...... =.+.++.+++..++..+.++ .|+... .+.++.
T Consensus 20 ~~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~-~~e~i~~~~~~~~~~~~~~ll~pg~~~--~~dl~~ 96 (337)
T PRK08195 20 HQYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHT-DEEYIEAAAEVVKQAKIAALLLPGIGT--VDDLKM 96 (337)
T ss_pred CccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCC-HHHHHHHHHHhCCCCEEEEEeccCccc--HHHHHH
Confidence 358999999999999999999887753321 001 000011 12455556554455666653 365444 566788
Q ss_pred HHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEe
Q psy2895 160 FKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTI 239 (293)
Q Consensus 160 l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i 239 (293)
..++|++.+.+..-.+ ..+...+.++.+++. |+.+...++....-+++.+.+.++.+.+.|++.+.+
T Consensus 97 a~~~gvd~iri~~~~~-----------e~~~~~~~i~~ak~~--G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i 163 (337)
T PRK08195 97 AYDAGVRVVRVATHCT-----------EADVSEQHIGLAREL--GMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYV 163 (337)
T ss_pred HHHcCCCEEEEEEecc-----------hHHHHHHHHHHHHHC--CCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEe
Confidence 8889999988763211 234578889999999 998888877766788999999999999999998876
No 166
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=97.59 E-value=0.0072 Score=55.77 Aligned_cols=142 Identities=13% Similarity=0.112 Sum_probs=101.0
Q ss_pred CCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCC
Q psy2895 86 DPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALP 165 (293)
Q Consensus 86 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~ 165 (293)
..++.++.+++++.+.+.|++.|-++ .+ ..+ +.-.+.++.+.+..+...+..+.. .. .+.++...++|+
T Consensus 17 ~~~s~~~k~~ia~~L~~~Gv~~IEvG--~p-~~~----~~~~e~i~~i~~~~~~~~v~~~~r--~~--~~di~~a~~~g~ 85 (363)
T TIGR02090 17 VSLTVEQKVEIARKLDELGVDVIEAG--FP-IAS----EGEFEAIKKISQEGLNAEICSLAR--AL--KKDIDKAIDCGV 85 (363)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEe--CC-CCC----hHHHHHHHHHHhcCCCcEEEEEcc--cC--HHHHHHHHHcCc
Confidence 45899999999999999999988653 22 122 122366777766554444444332 11 566888889999
Q ss_pred CeeeeccccchHHH-hhcCCC--CCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 166 DVLNHNIETVPRLY-KKVRPG--SDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 166 ~~i~~~less~~~~-~~i~~~--~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
+.+.+.+-+|+... .+++++ ...+...+.++.+++. |+.+..++.-+..-+.+.+.+.++.+.+.|++.+.+.
T Consensus 86 ~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~--G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~ 161 (363)
T TIGR02090 86 DSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEH--GLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINIA 161 (363)
T ss_pred CEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 99988766665433 344432 2567778899999999 9988777655556778999999999999999988764
No 167
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=97.54 E-value=0.013 Score=51.59 Aligned_cols=136 Identities=13% Similarity=0.128 Sum_probs=95.4
Q ss_pred CCCChhHHHHHHHHHHHCCCcEEEEeeecC-----CC--CCCCChhHHHHHHHHHHhhCCCcEEEEEc-CCCcCcHHHHH
Q psy2895 86 DPLDIEEPKKIAYTINKLKLNYVVITSVNR-----DD--LHDGGSSHFVSCIKHIRKLSTKIKIEILI-PDFRNQINHVL 157 (293)
Q Consensus 86 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~-----~~--l~~~~~~~~~~ll~~i~~~~~~~~i~~~~-~~~~~~~~e~l 157 (293)
..++.++..+.++.+.+.|+..|-++.... .. ++.. + =.+.++.+++..++..+.++. ++... .+.+
T Consensus 17 ~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~--~-~~e~i~~~~~~~~~~~~~~~~~~~~~~--~~~i 91 (263)
T cd07943 17 HQFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAH--T-DEEYLEAAAEALKQAKLGVLLLPGIGT--VDDL 91 (263)
T ss_pred eecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCC--C-hHHHHHHHHHhccCCEEEEEecCCccC--HHHH
Confidence 358999999999999999999887662210 00 1111 1 234556665555566666543 33333 4567
Q ss_pred HHHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEE
Q psy2895 158 KIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDIL 237 (293)
Q Consensus 158 ~~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i 237 (293)
+...++|++.+.+..-.++ .+...+.++.+++. |+.+...++-...-+++.+.+.++.+.+.|++.+
T Consensus 92 ~~a~~~g~~~iri~~~~s~-----------~~~~~~~i~~ak~~--G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i 158 (263)
T cd07943 92 KMAADLGVDVVRVATHCTE-----------ADVSEQHIGAARKL--GMDVVGFLMMSHMASPEELAEQAKLMESYGADCV 158 (263)
T ss_pred HHHHHcCCCEEEEEechhh-----------HHHHHHHHHHHHHC--CCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEE
Confidence 8888899999887543232 23567889999999 9988777765556788999999999999999988
Q ss_pred Ee
Q psy2895 238 TI 239 (293)
Q Consensus 238 ~i 239 (293)
.+
T Consensus 159 ~l 160 (263)
T cd07943 159 YV 160 (263)
T ss_pred EE
Confidence 76
No 168
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=97.52 E-value=0.0092 Score=52.65 Aligned_cols=136 Identities=16% Similarity=0.199 Sum_probs=96.2
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecC--CCC----CCCChhHHHHHHHHHHhhCCCcEEEEEc-CCCcCcHHHHHHH
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNR--DDL----HDGGSSHFVSCIKHIRKLSTKIKIEILI-PDFRNQINHVLKI 159 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~--~~l----~~~~~~~~~~ll~~i~~~~~~~~i~~~~-~~~~~~~~e~l~~ 159 (293)
.++.++..++++.+.+.|+..|-+.-... ... ...+.+.+..+.+..+ ++..+.++. +.... .+.++.
T Consensus 16 ~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~--~~~l~~ 90 (266)
T cd07944 16 DFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK---GNTKIAVMVDYGNDD--IDLLEP 90 (266)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc---cCCEEEEEECCCCCC--HHHHHH
Confidence 58999999999999999999886652111 100 0011233433333322 245666654 33222 456777
Q ss_pred HHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEe
Q psy2895 160 FKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTI 239 (293)
Q Consensus 160 l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i 239 (293)
..+.|++.+.+... ....+...+.++.++++ |+.+...++-.++-+++.+.+.++.+.+.|++.+.+
T Consensus 91 a~~~gv~~iri~~~-----------~~~~~~~~~~i~~ak~~--G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l 157 (266)
T cd07944 91 ASGSVVDMIRVAFH-----------KHEFDEALPLIKAIKEK--GYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYI 157 (266)
T ss_pred HhcCCcCEEEEecc-----------cccHHHHHHHHHHHHHC--CCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 77889999887642 23788899999999999 999888888777888999999999999999998877
Q ss_pred e
Q psy2895 240 G 240 (293)
Q Consensus 240 ~ 240 (293)
.
T Consensus 158 ~ 158 (266)
T cd07944 158 V 158 (266)
T ss_pred e
Confidence 4
No 169
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=97.51 E-value=0.018 Score=52.40 Aligned_cols=136 Identities=15% Similarity=0.143 Sum_probs=95.2
Q ss_pred CCCChhHHHHHHHHHHHCCCcEEEEeeecC-----CC--CC-CCChhHHHHHHHHHHhhCCCcEEEEE-cCCCcCcHHHH
Q psy2895 86 DPLDIEEPKKIAYTINKLKLNYVVITSVNR-----DD--LH-DGGSSHFVSCIKHIRKLSTKIKIEIL-IPDFRNQINHV 156 (293)
Q Consensus 86 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~-----~~--l~-~~~~~~~~~ll~~i~~~~~~~~i~~~-~~~~~~~~~e~ 156 (293)
..++.+++.++++.+.+.|+..|-++.|+. -. .+ ..+.+++ +.+.+..++..+.++ .|+... .+.
T Consensus 19 ~~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i----~~~~~~~~~~~~~~ll~pg~~~--~~d 92 (333)
T TIGR03217 19 HQFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYI----EAAADVVKRAKVAVLLLPGIGT--VHD 92 (333)
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHH----HHHHHhCCCCEEEEEeccCccC--HHH
Confidence 358999999999999999999887762211 00 11 1123333 344333344566643 465444 566
Q ss_pred HHHHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCE
Q psy2895 157 LKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDI 236 (293)
Q Consensus 157 l~~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~ 236 (293)
++...++|++.+.+..-.+ ..+...+.++.+++. |+.+...++..+.-+++.+.+.++.+.+.|++.
T Consensus 93 l~~a~~~gvd~iri~~~~~-----------e~d~~~~~i~~ak~~--G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~ 159 (333)
T TIGR03217 93 LKAAYDAGARTVRVATHCT-----------EADVSEQHIGMAREL--GMDTVGFLMMSHMTPPEKLAEQAKLMESYGADC 159 (333)
T ss_pred HHHHHHCCCCEEEEEeccc-----------hHHHHHHHHHHHHHc--CCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCE
Confidence 8888889999988764211 234567889999999 998887777777888999999999999999998
Q ss_pred EEee
Q psy2895 237 LTIG 240 (293)
Q Consensus 237 i~i~ 240 (293)
+.+.
T Consensus 160 i~i~ 163 (333)
T TIGR03217 160 VYIV 163 (333)
T ss_pred EEEc
Confidence 8773
No 170
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=97.49 E-value=0.017 Score=50.95 Aligned_cols=142 Identities=15% Similarity=0.122 Sum_probs=99.7
Q ss_pred CCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcC-
Q psy2895 86 DPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQAL- 164 (293)
Q Consensus 86 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG- 164 (293)
..++.++.++.++.+.+.|++.|-+++.. .. .+.+ +.++.+.+..++..+..+... . .+.++...++|
T Consensus 15 ~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~---~~---~~~~-~~~~~l~~~~~~~~~~~l~r~--~--~~~v~~a~~~~~ 83 (268)
T cd07940 15 VSLTPEEKLEIARQLDELGVDVIEAGFPA---AS---PGDF-EAVKRIAREVLNAEICGLARA--V--KKDIDAAAEALK 83 (268)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeCCC---CC---HHHH-HHHHHHHHhCCCCEEEEEccC--C--HhhHHHHHHhCC
Confidence 35899999999999999999988775321 11 1222 667777776666666665421 1 34456666677
Q ss_pred ---CCeeeeccccch-HHHhhcCCC--CCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEE
Q psy2895 165 ---PDVLNHNIETVP-RLYKKVRPG--SDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILT 238 (293)
Q Consensus 165 ---~~~i~~~less~-~~~~~i~~~--~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~ 238 (293)
++.+.+..-.|+ ...++++++ ...+...+.++.+++. |+.+..+.+.+..-+++.+.+.++.+.++|++.+.
T Consensus 84 ~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~--G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~ 161 (268)
T cd07940 84 PAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSH--GLDVEFSAEDATRTDLDFLIEVVEAAIEAGATTIN 161 (268)
T ss_pred CCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 999887654454 334445532 2467788899999999 99877666555556788889999999999999887
Q ss_pred ee
Q psy2895 239 IG 240 (293)
Q Consensus 239 i~ 240 (293)
+.
T Consensus 162 l~ 163 (268)
T cd07940 162 IP 163 (268)
T ss_pred EC
Confidence 73
No 171
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=97.48 E-value=0.012 Score=54.67 Aligned_cols=142 Identities=12% Similarity=0.048 Sum_probs=98.5
Q ss_pred CCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCC
Q psy2895 86 DPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALP 165 (293)
Q Consensus 86 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~ 165 (293)
..++.++.+++++.+.+.|++.|-++ . |... +.-.+.++.+.+......+..... .. .+.++...++|+
T Consensus 21 ~~~s~e~k~~ia~~L~~~GV~~IE~G--~-p~~~----~~~~e~i~~i~~~~~~~~i~~~~r--~~--~~di~~a~~~g~ 89 (378)
T PRK11858 21 VVFTNEEKLAIARMLDEIGVDQIEAG--F-PAVS----EDEKEAIKAIAKLGLNASILALNR--AV--KSDIDASIDCGV 89 (378)
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEEEe--C-CCcC----hHHHHHHHHHHhcCCCeEEEEEcc--cC--HHHHHHHHhCCc
Confidence 35899999999999999999987653 3 2232 122356677766533333332221 11 556788889999
Q ss_pred CeeeeccccchH-HHhhcCCC--CCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 166 DVLNHNIETVPR-LYKKVRPG--SDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 166 ~~i~~~less~~-~~~~i~~~--~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
+.+.+.+-+|+. +..+++.. ...+...+.++.+++. |+.+..+..-+..-+.+.+.+.++.+.+.|++.+.+.
T Consensus 90 ~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~--G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~ 165 (378)
T PRK11858 90 DAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDH--GLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRVRFC 165 (378)
T ss_pred CEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 999988766654 33345432 2455566688889999 9988776665556778999999999999999988763
No 172
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=97.47 E-value=0.013 Score=53.41 Aligned_cols=145 Identities=13% Similarity=0.103 Sum_probs=96.5
Q ss_pred CCCChhHHHHHHHHHHHCCCcEEEEeeecCC-CCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcC
Q psy2895 86 DPLDIEEPKKIAYTINKLKLNYVVITSVNRD-DLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQAL 164 (293)
Q Consensus 86 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~-~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG 164 (293)
..++.|+-+++++.+.+.|++.|-++..-.| ..|. ..+-.++++.+++. ++..+....+ . .+-+++..++|
T Consensus 63 ~~~s~e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPq--mad~~ev~~~i~~~-~~~~~~~l~~---n--~~die~A~~~g 134 (347)
T PLN02746 63 NIVPTSVKVELIQRLVSSGLPVVEATSFVSPKWVPQ--LADAKDVMAAVRNL-EGARFPVLTP---N--LKGFEAAIAAG 134 (347)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEECCCcCcccccc--cccHHHHHHHHHhc-cCCceeEEcC---C--HHHHHHHHHcC
Confidence 4689999999999999999998866533222 1221 12344566666552 2334433333 2 56678888999
Q ss_pred CCeeeeccccchHHHhh-cCCC--CCHHHHHHHHHHHHHhCCCceeeEeE--Eeec---C-CCHHHHHHHHHHHHhCCCC
Q psy2895 165 PDVLNHNIETVPRLYKK-VRPG--SDYKHSLNLLKNFKKLYPNILTKSGI--MVGL---G-ENDEEILTVIHDMRNHNID 235 (293)
Q Consensus 165 ~~~i~~~less~~~~~~-i~~~--~~~e~~l~~i~~~~~~~pgi~~~~~~--ivG~---g-Et~ed~~~~l~~l~~l~~~ 235 (293)
++.+.+.+-+|+...++ +++. ...+.+.+.++.++++ |+.+...+ .+|. + -+++.+.+.++.+.+.|++
T Consensus 135 ~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~--Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~Gad 212 (347)
T PLN02746 135 AKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKH--SIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMGCY 212 (347)
T ss_pred cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcCCC
Confidence 99999888556654433 3322 2344455688889999 99887555 4553 2 3577788889999999999
Q ss_pred EEEee
Q psy2895 236 ILTIG 240 (293)
Q Consensus 236 ~i~i~ 240 (293)
.|.+.
T Consensus 213 ~I~l~ 217 (347)
T PLN02746 213 EISLG 217 (347)
T ss_pred EEEec
Confidence 88773
No 173
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=97.41 E-value=0.016 Score=53.52 Aligned_cols=141 Identities=9% Similarity=0.047 Sum_probs=97.5
Q ss_pred CCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCC
Q psy2895 86 DPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALP 165 (293)
Q Consensus 86 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~ 165 (293)
..++.++.+++++.+.+.|++.|-++ . |... +.=.+.++.+.+..++..+..+.. .. .+.++...++|+
T Consensus 18 ~~~s~~~k~~ia~~L~~~Gv~~IEvG--~-p~~~----~~~~e~i~~i~~~~~~~~i~~~~r--~~--~~di~~a~~~g~ 86 (365)
T TIGR02660 18 VAFTAAEKLAIARALDEAGVDELEVG--I-PAMG----EEERAVIRAIVALGLPARLMAWCR--AR--DADIEAAARCGV 86 (365)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEe--C-CCCC----HHHHHHHHHHHHcCCCcEEEEEcC--CC--HHHHHHHHcCCc
Confidence 35899999999999999999988663 2 2222 222356777776654444443321 12 567888889999
Q ss_pred CeeeeccccchHH-HhhcCCC--CCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEe
Q psy2895 166 DVLNHNIETVPRL-YKKVRPG--SDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTI 239 (293)
Q Consensus 166 ~~i~~~less~~~-~~~i~~~--~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i 239 (293)
+.+.+.+-+|+.. ..++++. ...+...+.++.+++. |+.+..+..-+..-+.+.+.+.++.+.+.|++.+.+
T Consensus 87 ~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~--g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l 161 (365)
T TIGR02660 87 DAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDR--GLFVSVGGEDASRADPDFLVELAEVAAEAGADRFRF 161 (365)
T ss_pred CEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhC--CCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEE
Confidence 9998877556433 3334432 2345556888889998 988776655554566888899999999999998766
No 174
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=97.39 E-value=0.0039 Score=53.87 Aligned_cols=144 Identities=14% Similarity=0.166 Sum_probs=93.3
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEc-CCCcCcHHHHHHHHHHcCC
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILI-PDFRNQINHVLKIFKQALP 165 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~-~~~~~~~~e~l~~l~~aG~ 165 (293)
.++.++..+.++.+.+.|+..|-+... .....+.+.+..+.+.+. ...+.... +... .++..++.++++|+
T Consensus 10 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~---~~~~~~~~~v~~~~~~~~----~~~~~~~~~~~~~-~i~~~~~~~~~~g~ 81 (237)
T PF00682_consen 10 AFSTEEKLEIAKALDEAGVDYIEVGFP---FASEDDFEQVRRLREALP----NARLQALCRANEE-DIERAVEAAKEAGI 81 (237)
T ss_dssp T--HHHHHHHHHHHHHHTTSEEEEEHC---TSSHHHHHHHHHHHHHHH----SSEEEEEEESCHH-HHHHHHHHHHHTTS
T ss_pred CcCHHHHHHHHHHHHHhCCCEEEEccc---ccCHHHHHHhhhhhhhhc----ccccceeeeehHH-HHHHHHHhhHhccC
Confidence 488999999999999999999876511 111112333444444333 33444433 2111 11444666778999
Q ss_pred CeeeeccccchHHHh-hcCC--CCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 166 DVLNHNIETVPRLYK-KVRP--GSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 166 ~~i~~~less~~~~~-~i~~--~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
+.+.+....|+...+ .++. ....+...+.++.+++. |+.+..+..-...-+++++.+.++.+.++|++.+.+.
T Consensus 82 ~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~--g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~ 157 (237)
T PF00682_consen 82 DIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKEL--GYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLA 157 (237)
T ss_dssp SEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHT--TSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEE
T ss_pred CEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhc--CCceEeCccccccccHHHHHHHHHHHHHcCCeEEEee
Confidence 999987666654433 3332 22466677788889999 9988666655557789999999999999999998774
No 175
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=97.24 E-value=0.024 Score=50.28 Aligned_cols=145 Identities=11% Similarity=0.120 Sum_probs=98.0
Q ss_pred CCCChhHHHHHHHHHHHCCCcEEEEeeecCCC-CCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcC
Q psy2895 86 DPLDIEEPKKIAYTINKLKLNYVVITSVNRDD-LHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQAL 164 (293)
Q Consensus 86 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~-l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG 164 (293)
..++.|+-+++++.+.+.|++.|-+++.-.|. .|. .....++++.+.+. ++..+..+.+ . .+-+++..++|
T Consensus 15 ~~~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~--~~d~~~~~~~l~~~-~~~~~~~~~~---~--~~dv~~A~~~g 86 (274)
T cd07938 15 TFIPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQ--MADAEEVLAGLPRR-PGVRYSALVP---N--LRGAERALAAG 86 (274)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccc--cCCHHHHHhhcccC-CCCEEEEECC---C--HHHHHHHHHcC
Confidence 46899999999999999999998776443222 221 11223455555442 2344544432 2 44577777899
Q ss_pred CCeeeeccccchHH-HhhcCCC--CCHHHHHHHHHHHHHhCCCceeeEeEEeecC------CCHHHHHHHHHHHHhCCCC
Q psy2895 165 PDVLNHNIETVPRL-YKKVRPG--SDYKHSLNLLKNFKKLYPNILTKSGIMVGLG------ENDEEILTVIHDMRNHNID 235 (293)
Q Consensus 165 ~~~i~~~less~~~-~~~i~~~--~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~g------Et~ed~~~~l~~l~~l~~~ 235 (293)
++.+.+.+-+|+.. .+.+++. ...+...+.++.+++. |+.+...+..-++ -+.+.+.+.++.+.+.|++
T Consensus 87 ~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~--G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~Ga~ 164 (274)
T cd07938 87 VDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAA--GLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLGCD 164 (274)
T ss_pred cCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHC--CCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 99998877666543 3345433 3567778888999999 9987666654442 2567888999999999999
Q ss_pred EEEee
Q psy2895 236 ILTIG 240 (293)
Q Consensus 236 ~i~i~ 240 (293)
.+.+.
T Consensus 165 ~i~l~ 169 (274)
T cd07938 165 EISLG 169 (274)
T ss_pred EEEEC
Confidence 88773
No 176
>PRK00915 2-isopropylmalate synthase; Validated
Probab=97.10 E-value=0.03 Score=54.05 Aligned_cols=145 Identities=14% Similarity=0.145 Sum_probs=95.3
Q ss_pred CCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCC
Q psy2895 86 DPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALP 165 (293)
Q Consensus 86 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~ 165 (293)
..++.++-+++++.+.+.|++.|-++ .| ... ...+ +.++.+.+..++..+..++.....+++..++.++++|.
T Consensus 21 ~~~s~e~K~~ia~~L~~~Gv~~IE~G--~p-~~s---~~d~-~~v~~i~~~~~~~~i~a~~r~~~~did~a~~a~~~~~~ 93 (513)
T PRK00915 21 ASLTVEEKLQIAKQLERLGVDVIEAG--FP-ASS---PGDF-EAVKRIARTVKNSTVCGLARAVKKDIDAAAEALKPAEA 93 (513)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEc--CC-CCC---hHHH-HHHHHHHhhCCCCEEEEEccCCHHHHHHHHHHhhcCCC
Confidence 35899999999999999999987663 22 111 1222 33466655444556665542112222455666668899
Q ss_pred CeeeeccccchH-HHhhcCCC--CCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEe
Q psy2895 166 DVLNHNIETVPR-LYKKVRPG--SDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTI 239 (293)
Q Consensus 166 ~~i~~~less~~-~~~~i~~~--~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i 239 (293)
+++++.+-+|+- +..+++.. ...+...+.++.++++ |+.+..+..-+..-+.+.+.+.++.+.+.|++.+.+
T Consensus 94 ~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~--g~~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l 168 (513)
T PRK00915 94 PRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSY--TDDVEFSAEDATRTDLDFLCRVVEAAIDAGATTINI 168 (513)
T ss_pred CEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 999987766543 33344432 2445566888899999 987765554444456777889999999999998766
No 177
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=96.94 E-value=0.16 Score=44.94 Aligned_cols=146 Identities=12% Similarity=0.095 Sum_probs=94.1
Q ss_pred CCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhC-CCcEEEEEc----CCCcCcHHHHHHHH
Q psy2895 86 DPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLS-TKIKIEILI----PDFRNQINHVLKIF 160 (293)
Q Consensus 86 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~-~~~~i~~~~----~~~~~~~~e~l~~l 160 (293)
..++.++..+.++.+.+.|++.|-++.+.. . +.-.+.++.+.+.. ++..+.... ++....-+..++.+
T Consensus 15 ~~~s~e~k~~i~~~L~~~Gv~~IE~G~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a 87 (273)
T cd07941 15 ISFSVEDKLRIARKLDELGVDYIEGGWPGS---N----PKDTEFFARAKKLKLKHAKLAAFGSTRRAGVKAEEDPNLQAL 87 (273)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEecCCcC---C----HHHHHHHHHHHHcCCCCcEEEEEecccccCCCccchHHHHHH
Confidence 358999999999999999999987744221 1 11223345554432 233444332 13211003467788
Q ss_pred HHcCCCeeeeccccchH-HHhhcCC--CCCHHHHHHHHHHHHHhCCCceeeEeEE---eecCCCHHHHHHHHHHHHhCCC
Q psy2895 161 KQALPDVLNHNIETVPR-LYKKVRP--GSDYKHSLNLLKNFKKLYPNILTKSGIM---VGLGENDEEILTVIHDMRNHNI 234 (293)
Q Consensus 161 ~~aG~~~i~~~less~~-~~~~i~~--~~~~e~~l~~i~~~~~~~pgi~~~~~~i---vG~gEt~ed~~~~l~~l~~l~~ 234 (293)
.++|++.+.+.+-+|+- ..+.+++ ....+...+.++.+++. |+.+..+.+ -|..-+++.+.+.++.+.+.|+
T Consensus 88 ~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~--G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~ 165 (273)
T cd07941 88 LEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSH--GREVIFDAEHFFDGYKANPEYALATLKAAAEAGA 165 (273)
T ss_pred HhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHc--CCeEEEeEEeccccCCCCHHHHHHHHHHHHhCCC
Confidence 89999998887655543 3334443 24667788888999999 998766433 2223457777888899999999
Q ss_pred CEEEee
Q psy2895 235 DILTIG 240 (293)
Q Consensus 235 ~~i~i~ 240 (293)
+.+.+.
T Consensus 166 ~~i~l~ 171 (273)
T cd07941 166 DWLVLC 171 (273)
T ss_pred CEEEEe
Confidence 987763
No 178
>PRK09389 (R)-citramalate synthase; Provisional
Probab=96.91 E-value=0.084 Score=50.67 Aligned_cols=141 Identities=10% Similarity=0.032 Sum_probs=95.5
Q ss_pred CCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCC
Q psy2895 86 DPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALP 165 (293)
Q Consensus 86 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~ 165 (293)
..++.++.+++++.+.+.|++.|-+. .+ ..+ ... .+.++.+.+...+..+..+... . .+.++...++|+
T Consensus 19 ~~~s~e~K~~ia~~L~~~Gv~~IE~G--~p-~~~---~~d-~e~v~~i~~~~~~~~i~a~~r~-~---~~di~~a~~~g~ 87 (488)
T PRK09389 19 VSLTPEEKLEIARKLDELGVDVIEAG--SA-ITS---EGE-REAIKAVTDEGLNAEICSFARA-V---KVDIDAALECDV 87 (488)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEEe--CC-cCC---HHH-HHHHHHHHhcCCCcEEEeeccc-C---HHHHHHHHhCCc
Confidence 46899999999999999999987654 22 112 122 2455666554333344443321 1 455788888999
Q ss_pred CeeeeccccchHHHh-hcCC--CCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEe
Q psy2895 166 DVLNHNIETVPRLYK-KVRP--GSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTI 239 (293)
Q Consensus 166 ~~i~~~less~~~~~-~i~~--~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i 239 (293)
+.+++.+-+|+-..+ +++. ....+...+.++.+++. |+.+..+..-+..-+++.+.+.++.+.+.|++.+.+
T Consensus 88 ~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~--g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l 162 (488)
T PRK09389 88 DSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDH--GLIVELSGEDASRADLDFLKELYKAGIEAGADRICF 162 (488)
T ss_pred CEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 999988766654333 3332 23456677777888888 988776666554556777889999999999998766
No 179
>KOG2535|consensus
Probab=96.89 E-value=0.11 Score=46.82 Aligned_cols=147 Identities=14% Similarity=0.080 Sum_probs=93.5
Q ss_pred hhHHHHHHHHHHHCCCc----EEEEeeecCCCCCCCChhHHH-HHHHHHH--------------hh--CCCcEEEEEc-C
Q psy2895 90 IEEPKKIAYTINKLKLN----YVVITSVNRDDLHDGGSSHFV-SCIKHIR--------------KL--STKIKIEILI-P 147 (293)
Q Consensus 90 ~eei~~~~~~~~~~G~~----~i~l~gg~~~~l~~~~~~~~~-~ll~~i~--------------~~--~~~~~i~~~~-~ 147 (293)
.++....++++..+|.. +.++-||..-++|..-.++|. .+-.++. ++ ..-++|++-+ |
T Consensus 152 ~~QaR~Rv~QLk~LGHsvDKVE~i~MGGTFMsLPe~YRd~FI~nLHdALSGhts~~v~EAv~yse~s~tKCiGiTIETRP 231 (554)
T KOG2535|consen 152 YLQARGRVEQLKQLGHSVDKVEFIVMGGTFMSLPEEYRDYFIRNLHDALSGHTSANVEEAVKYSERSLTKCIGITIETRP 231 (554)
T ss_pred HHHHHHHHHHHHHhCCccceeEEEEecceeecChHHHHHHHHHHHHHHhcCCCccCHHHHHHhhhhccceeeeEEeecCc
Confidence 46667778888888753 345667764444321001111 1111111 11 1123566655 6
Q ss_pred CCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec--CCCHHHHHH
Q psy2895 148 DFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL--GENDEEILT 224 (293)
Q Consensus 148 ~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~--gEt~ed~~~ 224 (293)
++-. ...|..+-..|+.++.+++|| -+++-+.-+|+|+...+-+....++++ |+.+.+.||.-+ -.-+.|++.
T Consensus 232 DyC~--~~Hl~~ML~YGCTRlEiGVQS~YEDVARDTNRGHTV~aVce~F~laKDa--G~KvV~HMMPdLPNVg~eRDieq 307 (554)
T KOG2535|consen 232 DYCL--KRHLSDMLTYGCTRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDA--GFKVVAHMMPDLPNVGMERDIEQ 307 (554)
T ss_pred ccch--hhhHHHHHhcCCceEEeccchhHHHhhhcccCCccHHHHHHHhhhhhcc--CceeehhhCCCCCCCchhhhHHH
Confidence 5433 456677667999999999999 589988889999999999999999999 999999999877 233445555
Q ss_pred HHHHHHh--CCCCEEEee
Q psy2895 225 VIHDMRN--HNIDILTIG 240 (293)
Q Consensus 225 ~l~~l~~--l~~~~i~i~ 240 (293)
..++... ...|-+.++
T Consensus 308 F~E~FenP~FR~DGLKiY 325 (554)
T KOG2535|consen 308 FKEYFENPAFRPDGLKIY 325 (554)
T ss_pred HHHHhcCcCcCCCcceec
Confidence 5555544 334444443
No 180
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=96.80 E-value=0.058 Score=47.82 Aligned_cols=140 Identities=11% Similarity=0.098 Sum_probs=93.9
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCC--CCCCChhHHHHHHHHHHhhCCCcEEEEEcC-----CC---cCc-HHH
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDD--LHDGGSSHFVSCIKHIRKLSTKIKIEILIP-----DF---RNQ-INH 155 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~--l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~-----~~---~~~-~~e 155 (293)
.++.++.++++..+.+.|+..|-+.++.... +.....+. .+.++.+.+..++..+..... ++ ..+ .++
T Consensus 17 ~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~-~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~ 95 (275)
T cd07937 17 RMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDP-WERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVEL 95 (275)
T ss_pred eccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCH-HHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHH
Confidence 5889999999999999999988766532100 00001111 355566666555555544321 11 001 266
Q ss_pred HHHHHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEe--ecCCCHHHHHHHHHHHHhCC
Q psy2895 156 VLKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMV--GLGENDEEILTVIHDMRNHN 233 (293)
Q Consensus 156 ~l~~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~iv--G~gEt~ed~~~~l~~l~~l~ 233 (293)
.++...++|++.+.+..-.+ +.+...+.++.+++. |+.+...+.. +-.-+++.+.+.++.+.+.|
T Consensus 96 di~~~~~~g~~~iri~~~~~-----------~~~~~~~~i~~ak~~--G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~G 162 (275)
T cd07937 96 FVEKAAKNGIDIFRIFDALN-----------DVRNLEVAIKAVKKA--GKHVEGAICYTGSPVHTLEYYVKLAKELEDMG 162 (275)
T ss_pred HHHHHHHcCCCEEEEeecCC-----------hHHHHHHHHHHHHHC--CCeEEEEEEecCCCCCCHHHHHHHHHHHHHcC
Confidence 78888889999988764322 367888999999999 9877655543 22567888999999999999
Q ss_pred CCEEEee
Q psy2895 234 IDILTIG 240 (293)
Q Consensus 234 ~~~i~i~ 240 (293)
++.+.+.
T Consensus 163 a~~i~l~ 169 (275)
T cd07937 163 ADSICIK 169 (275)
T ss_pred CCEEEEc
Confidence 9988774
No 181
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=96.77 E-value=0.11 Score=50.00 Aligned_cols=145 Identities=14% Similarity=0.126 Sum_probs=92.4
Q ss_pred CCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCC
Q psy2895 86 DPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALP 165 (293)
Q Consensus 86 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~ 165 (293)
..++.++-+++++.|.+.|++.|-+ |.+ ..+ ...+ +.++.+.+..++..+..+......+++..++.+..++.
T Consensus 18 ~~~s~e~K~~ia~~L~~~GV~~IEv--G~p-~~s---~~d~-e~v~~i~~~~~~~~i~al~r~~~~did~a~~al~~~~~ 90 (494)
T TIGR00973 18 ASLTVEEKLQIALALERLGVDIIEA--GFP-VSS---PGDF-EAVQRIARTVKNPRVCGLARCVEKDIDAAAEALKPAEK 90 (494)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEE--ECC-CCC---HHHH-HHHHHHHHhCCCCEEEEEcCCCHHhHHHHHHhccccCC
Confidence 3589999999999999999998764 332 112 2233 33466655444445555543112222344555656688
Q ss_pred CeeeeccccchHHH-hhcCC--CCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEe
Q psy2895 166 DVLNHNIETVPRLY-KKVRP--GSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTI 239 (293)
Q Consensus 166 ~~i~~~less~~~~-~~i~~--~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i 239 (293)
+++++.+-+|+-.. .+++. ....+...+.++.+++. |..+..+..-+..-+.+.+.+.++.+.+.|++.+.+
T Consensus 91 ~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~--g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l 165 (494)
T TIGR00973 91 FRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNF--TDDVEFSCEDAGRTEIPFLARIVEAAINAGATTINI 165 (494)
T ss_pred CEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCeEEEEcCCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 88888766654333 33442 22345555688888888 886655555454566788889999999999998766
No 182
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=96.66 E-value=0.14 Score=45.51 Aligned_cols=144 Identities=13% Similarity=0.161 Sum_probs=92.0
Q ss_pred CCCChhHHHHHHHHH-HHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHh--hCCCcEEEEEcCCCcCcHHHHHHHHHH
Q psy2895 86 DPLDIEEPKKIAYTI-NKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRK--LSTKIKIEILIPDFRNQINHVLKIFKQ 162 (293)
Q Consensus 86 ~~~~~eei~~~~~~~-~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~--~~~~~~i~~~~~~~~~~~~e~l~~l~~ 162 (293)
..++.++-+++++.+ .+.|++.|-+++- .....+.+.+.++.+.-.. ..++..+....+ . ...++...+
T Consensus 14 ~~~s~e~K~~i~~~L~~~~Gv~~IEvg~~---~~s~~e~~av~~~~~~~~~~~~~~~~~~~a~~~----~-~~~~~~A~~ 85 (280)
T cd07945 14 VSFSPSEKLNIAKILLQELKVDRIEVASA---RVSEGEFEAVQKIIDWAAEEGLLDRIEVLGFVD----G-DKSVDWIKS 85 (280)
T ss_pred CccCHHHHHHHHHHHHHHhCCCEEEecCC---CCCHHHHHHHHHHHHHhhhhccccCcEEEEecC----c-HHHHHHHHH
Confidence 358999999999997 6779998876532 1121111233333322111 111222222222 1 345788888
Q ss_pred cCCCeeeeccccchHH-HhhcCC--CCCHHHHHHHHHHHHHhCCCceeeEeEEeecC----CCHHHHHHHHHHHHhCCCC
Q psy2895 163 ALPDVLNHNIETVPRL-YKKVRP--GSDYKHSLNLLKNFKKLYPNILTKSGIMVGLG----ENDEEILTVIHDMRNHNID 235 (293)
Q Consensus 163 aG~~~i~~~less~~~-~~~i~~--~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~g----Et~ed~~~~l~~l~~l~~~ 235 (293)
+|++.+.+.+-+|+.. .+++++ ....+++.+.++.+++. |+.+..++.- ++ -+++.+.+.++.+.+.|++
T Consensus 86 ~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~--G~~v~~~~~d-~~~~~r~~~~~~~~~~~~~~~~G~~ 162 (280)
T cd07945 86 AGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKN--GIEVNIYLED-WSNGMRDSPDYVFQLVDFLSDLPIK 162 (280)
T ss_pred CCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhC--CCEEEEEEEe-CCCCCcCCHHHHHHHHHHHHHcCCC
Confidence 9999999887566433 334443 33566777888899999 9987766653 33 4688899999999999999
Q ss_pred EEEee
Q psy2895 236 ILTIG 240 (293)
Q Consensus 236 ~i~i~ 240 (293)
.+.+.
T Consensus 163 ~i~l~ 167 (280)
T cd07945 163 RIMLP 167 (280)
T ss_pred EEEec
Confidence 88773
No 183
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=96.63 E-value=0.16 Score=48.41 Aligned_cols=139 Identities=14% Similarity=0.112 Sum_probs=89.8
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCC--CCCCChhHHHHHHHHHHhhCCCcEEEEEc---C--CCc---Cc-HHH
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDD--LHDGGSSHFVSCIKHIRKLSTKIKIEILI---P--DFR---NQ-INH 155 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~--l~~~~~~~~~~ll~~i~~~~~~~~i~~~~---~--~~~---~~-~~e 155 (293)
.++.++.+.+++.+.+.|+..|-+.||..-+ ++.. .+.-.+.++.+++..|+..+..+. + ++. ++ ++.
T Consensus 21 ~~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl-~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~ 99 (467)
T PRK14041 21 RMRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFL-NENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVEL 99 (467)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccc-CCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHH
Confidence 5889999999999999999998776664311 1101 112346777777766666665532 1 221 11 133
Q ss_pred HHHHHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec--CCCHHHHHHHHHHHHhCC
Q psy2895 156 VLKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL--GENDEEILTVIHDMRNHN 233 (293)
Q Consensus 156 ~l~~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~--gEt~ed~~~~l~~l~~l~ 233 (293)
.++...++|++.+.+..-.++ .+.....++.+++. |..+...+-+.+ ..|.+.+.+.++.+.+.|
T Consensus 100 fv~~A~~~Gvd~irif~~lnd-----------~~n~~~~i~~ak~~--G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~G 166 (467)
T PRK14041 100 FVKKVAEYGLDIIRIFDALND-----------IRNLEKSIEVAKKH--GAHVQGAISYTVSPVHTLEYYLEFARELVDMG 166 (467)
T ss_pred HHHHHHHCCcCEEEEEEeCCH-----------HHHHHHHHHHHHHC--CCEEEEEEEeccCCCCCHHHHHHHHHHHHHcC
Confidence 467777899999887543333 23456677788888 876654443333 356777888888888888
Q ss_pred CCEEEe
Q psy2895 234 IDILTI 239 (293)
Q Consensus 234 ~~~i~i 239 (293)
++.|.+
T Consensus 167 ad~I~i 172 (467)
T PRK14041 167 VDSICI 172 (467)
T ss_pred CCEEEE
Confidence 887766
No 184
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=96.46 E-value=0.21 Score=48.91 Aligned_cols=139 Identities=12% Similarity=0.097 Sum_probs=91.6
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCC--CCCCChhHHHHHHHHHHhhCCCcEEEEEc---C--CCc---Cc-HHH
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDD--LHDGGSSHFVSCIKHIRKLSTKIKIEILI---P--DFR---NQ-INH 155 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~--l~~~~~~~~~~ll~~i~~~~~~~~i~~~~---~--~~~---~~-~~e 155 (293)
.++.++.+++++.+.+.|+..|-+.||..-+ ++..+ +.=.+.++.+++..|+..+.... + |+. ++ +++
T Consensus 17 ~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~-e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~ 95 (582)
T TIGR01108 17 RMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLN-EDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVER 95 (582)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCC-CCHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHH
Confidence 5889999999999999999999877664321 11111 22346677787766776666542 1 221 11 245
Q ss_pred HHHHHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec--CCCHHHHHHHHHHHHhCC
Q psy2895 156 VLKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL--GENDEEILTVIHDMRNHN 233 (293)
Q Consensus 156 ~l~~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~--gEt~ed~~~~l~~l~~l~ 233 (293)
.++...++|++.+.+..-.++ .+.....++.++++ |+.+...+-+.. --|.+.+.+.++.+.+.|
T Consensus 96 ~v~~a~~~Gvd~irif~~lnd-----------~~n~~~~i~~ak~~--G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~G 162 (582)
T TIGR01108 96 FVKKAVENGMDVFRIFDALND-----------PRNLQAAIQAAKKH--GAHAQGTISYTTSPVHTLETYLDLAEELLEMG 162 (582)
T ss_pred HHHHHHHCCCCEEEEEEecCc-----------HHHHHHHHHHHHHc--CCEEEEEEEeccCCCCCHHHHHHHHHHHHHcC
Confidence 677788899999877532222 23466777888888 886665533322 246788888888888888
Q ss_pred CCEEEe
Q psy2895 234 IDILTI 239 (293)
Q Consensus 234 ~~~i~i 239 (293)
++.+.+
T Consensus 163 ad~I~i 168 (582)
T TIGR01108 163 VDSICI 168 (582)
T ss_pred CCEEEE
Confidence 887766
No 185
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=96.35 E-value=0.28 Score=46.50 Aligned_cols=140 Identities=14% Similarity=0.093 Sum_probs=90.3
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCCC--CCCChhHHHHHHHHHHhhCCCcEEEEEc---C--CCc---Cc-HHH
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDDL--HDGGSSHFVSCIKHIRKLSTKIKIEILI---P--DFR---NQ-INH 155 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l--~~~~~~~~~~ll~~i~~~~~~~~i~~~~---~--~~~---~~-~~e 155 (293)
.++.++.+++++.+.+.|+..|-+.||..-+- +..+ +.=.+.++.+++..|+..+.... + ++. ++ +.+
T Consensus 22 ~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~-e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~ 100 (448)
T PRK12331 22 RMTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLN-EDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVES 100 (448)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCC-CCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHH
Confidence 58899999999999999999998877753110 1111 12245667777766666665322 1 321 11 256
Q ss_pred HHHHHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec--CCCHHHHHHHHHHHHhCC
Q psy2895 156 VLKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL--GENDEEILTVIHDMRNHN 233 (293)
Q Consensus 156 ~l~~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~--gEt~ed~~~~l~~l~~l~ 233 (293)
.+++..++|++.+.+..-.++- +...+.++.++++ |+.+...+-+-. --|.+.+.+.++.+.+.|
T Consensus 101 ~v~~A~~~Gvd~irif~~lnd~-----------~n~~~~v~~ak~~--G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~G 167 (448)
T PRK12331 101 FVQKSVENGIDIIRIFDALNDV-----------RNLETAVKATKKA--GGHAQVAISYTTSPVHTIDYFVKLAKEMQEMG 167 (448)
T ss_pred HHHHHHHCCCCEEEEEEecCcH-----------HHHHHHHHHHHHc--CCeEEEEEEeecCCCCCHHHHHHHHHHHHHcC
Confidence 6788888999998875432321 1355577888888 876544433322 346677888888888888
Q ss_pred CCEEEee
Q psy2895 234 IDILTIG 240 (293)
Q Consensus 234 ~~~i~i~ 240 (293)
++.|.+.
T Consensus 168 ad~I~i~ 174 (448)
T PRK12331 168 ADSICIK 174 (448)
T ss_pred CCEEEEc
Confidence 8887763
No 186
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=96.32 E-value=0.27 Score=48.29 Aligned_cols=139 Identities=13% Similarity=0.128 Sum_probs=88.8
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCC--CCCCChhHHHHHHHHHHhhCCCcEEEEEcCC-----CcC---c-HHH
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDD--LHDGGSSHFVSCIKHIRKLSTKIKIEILIPD-----FRN---Q-INH 155 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~--l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~-----~~~---~-~~e 155 (293)
.++.++.+.++..+.+.|+..+-+.||-.-+ ++.... .=.+.++.+++..|+..+.....+ +.. + +++
T Consensus 23 r~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e-~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~ 101 (593)
T PRK14040 23 RLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGE-DPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVER 101 (593)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCC-CHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHH
Confidence 5889999999999999999998776663211 111111 224667778877777777654432 111 1 245
Q ss_pred HHHHHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEe--ecCCCHHHHHHHHHHHHhCC
Q psy2895 156 VLKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMV--GLGENDEEILTVIHDMRNHN 233 (293)
Q Consensus 156 ~l~~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~iv--G~gEt~ed~~~~l~~l~~l~ 233 (293)
.++...++|++.+.+..-.+ ..+.....++.++++ |..+...+-+ .-..|.+.+.+.++.+.+.|
T Consensus 102 ~v~~a~~~Gid~~rifd~ln-----------d~~~~~~ai~~ak~~--G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~G 168 (593)
T PRK14040 102 FVERAVKNGMDVFRVFDAMN-----------DPRNLETALKAVRKV--GAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMG 168 (593)
T ss_pred HHHHHHhcCCCEEEEeeeCC-----------cHHHHHHHHHHHHHc--CCeEEEEEEEeeCCccCHHHHHHHHHHHHHcC
Confidence 67788889999988752111 234566777778877 7754333222 22456677777777777888
Q ss_pred CCEEEe
Q psy2895 234 IDILTI 239 (293)
Q Consensus 234 ~~~i~i 239 (293)
++.+.+
T Consensus 169 ad~i~i 174 (593)
T PRK14040 169 VDSLCI 174 (593)
T ss_pred CCEEEE
Confidence 877766
No 187
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=96.18 E-value=0.28 Score=45.99 Aligned_cols=144 Identities=13% Similarity=0.124 Sum_probs=94.3
Q ss_pred CCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCC
Q psy2895 86 DPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALP 165 (293)
Q Consensus 86 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~ 165 (293)
..++.|+-+++++.|.++|++.|-.+... .+ +.-.+.++.+.+..+. .+...........+..++.+.++|+
T Consensus 19 ~~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~---~s----~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~ea~~~a~~ 90 (409)
T COG0119 19 VSFSVEEKIRIAKALDDLGVDYIEAGFPV---AS----PGDFEFVRAIAEKAGL-FICALIAALARAIKRDIEALLEAGV 90 (409)
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEeCCc---CC----hhhHHHHHHHHHhcCc-ccchhhhhhHHhHHhhHHHHHhCCC
Confidence 36899999999999999999987654322 22 2334555655532221 1111111122222557899999999
Q ss_pred CeeeeccccchHHHhh-cC--CCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEe
Q psy2895 166 DVLNHNIETVPRLYKK-VR--PGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTI 239 (293)
Q Consensus 166 ~~i~~~less~~~~~~-i~--~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i 239 (293)
+++++-..+|+-..+. ++ +....+...+.++.++++ |+.+..+..-...-+++.+.+.++.+.+.|.+.+.+
T Consensus 91 ~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~--g~~~~~~~Ed~~rt~~~~l~~~~~~~~~~ga~~i~l 165 (409)
T COG0119 91 DRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDH--GLEVRFSAEDATRTDPEFLAEVVKAAIEAGADRINL 165 (409)
T ss_pred CEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCeEEEEeeccccCCHHHHHHHHHHHHHcCCcEEEE
Confidence 9999876666433332 22 233566677788889999 987765444444778888899999999888888776
No 188
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=96.14 E-value=0.39 Score=47.22 Aligned_cols=140 Identities=11% Similarity=0.106 Sum_probs=90.7
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCC--CCCCChhHHHHHHHHHHhhCCCcEEEEEc---C--CCc---Cc-HHH
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDD--LHDGGSSHFVSCIKHIRKLSTKIKIEILI---P--DFR---NQ-INH 155 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~--l~~~~~~~~~~ll~~i~~~~~~~~i~~~~---~--~~~---~~-~~e 155 (293)
.++.++.+.++..+.+.|+..|-+.||..-+ +... .+.-.+.++.+++..|+..+.... + ++. ++ +++
T Consensus 22 r~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl-~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~ 100 (592)
T PRK09282 22 RMRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYL-NEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEK 100 (592)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccC-CccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHH
Confidence 4889999999999999999998777764311 1111 123446667777777776666542 1 211 11 255
Q ss_pred HHHHHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec--CCCHHHHHHHHHHHHhCC
Q psy2895 156 VLKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL--GENDEEILTVIHDMRNHN 233 (293)
Q Consensus 156 ~l~~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~--gEt~ed~~~~l~~l~~l~ 233 (293)
.++...++|++.+.+..-.++ .+.....++.++++ |..+...+-+-. --|.+.+.+.++.+.+.|
T Consensus 101 ~v~~A~~~Gvd~irif~~lnd-----------~~n~~~~i~~ak~~--G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~G 167 (592)
T PRK09282 101 FVEKAAENGIDIFRIFDALND-----------VRNMEVAIKAAKKA--GAHVQGTISYTTSPVHTIEKYVELAKELEEMG 167 (592)
T ss_pred HHHHHHHCCCCEEEEEEecCh-----------HHHHHHHHHHHHHc--CCEEEEEEEeccCCCCCHHHHHHHHHHHHHcC
Confidence 677888899999877532222 23456667777777 776655443322 346777888888888888
Q ss_pred CCEEEee
Q psy2895 234 IDILTIG 240 (293)
Q Consensus 234 ~~~i~i~ 240 (293)
++.|.+.
T Consensus 168 ad~I~i~ 174 (592)
T PRK09282 168 CDSICIK 174 (592)
T ss_pred CCEEEEC
Confidence 8877663
No 189
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=96.09 E-value=0.4 Score=46.48 Aligned_cols=145 Identities=12% Similarity=0.099 Sum_probs=92.1
Q ss_pred CCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhC-CCcEEEEEc----CCCcCcHHHHHHHH
Q psy2895 86 DPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLS-TKIKIEILI----PDFRNQINHVLKIF 160 (293)
Q Consensus 86 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~-~~~~i~~~~----~~~~~~~~e~l~~l 160 (293)
..++.++.+++++.+.+.|++.|-++... ... .. .+.++.+.+.. .+..+..+. ++.....+..++.+
T Consensus 22 ~~~s~e~Kl~ia~~L~~~Gvd~IEvG~p~---as~---~d-~~~~~~i~~~~l~~~~i~~~~~~~~~~i~~~~d~~~e~~ 94 (524)
T PRK12344 22 ISFSVEDKLRIARKLDELGVDYIEGGWPG---SNP---KD-TEFFKRAKELKLKHAKLAAFGSTRRAGVSAEEDPNLQAL 94 (524)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEcCCc---CCh---hH-HHHHHHHHHhCCCCcEEEEEeeccccCCCcccHHHHHHH
Confidence 36899999999999999999988763211 111 11 23455554422 233444332 13321114567888
Q ss_pred HHcCCCeeeeccccchHHH-hhcCC--CCCHHHHHHHHHHHHHhCCCceeeEeEE---eecCCCHHHHHHHHHHHHhCCC
Q psy2895 161 KQALPDVLNHNIETVPRLY-KKVRP--GSDYKHSLNLLKNFKKLYPNILTKSGIM---VGLGENDEEILTVIHDMRNHNI 234 (293)
Q Consensus 161 ~~aG~~~i~~~less~~~~-~~i~~--~~~~e~~l~~i~~~~~~~pgi~~~~~~i---vG~gEt~ed~~~~l~~l~~l~~ 234 (293)
.++|++.+++.+-+|+-.. +.++. ....+...+.++.+++. |..+..+.. -|...+.+.+.+.++.+.+.|+
T Consensus 95 ~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~--G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~~Ga 172 (524)
T PRK12344 95 LDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAH--GREVIFDAEHFFDGYKANPEYALATLKAAAEAGA 172 (524)
T ss_pred HhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHc--CCeEEEccccccccccCCHHHHHHHHHHHHhCCC
Confidence 8999999998776665332 33442 23556667788889998 887654333 1223456667888888899999
Q ss_pred CEEEe
Q psy2895 235 DILTI 239 (293)
Q Consensus 235 ~~i~i 239 (293)
+.+.+
T Consensus 173 d~i~l 177 (524)
T PRK12344 173 DWVVL 177 (524)
T ss_pred CeEEE
Confidence 98776
No 190
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=96.07 E-value=0.34 Score=46.63 Aligned_cols=141 Identities=15% Similarity=0.108 Sum_probs=84.2
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCC---------cEEEEEcCCCcCcHHHHH
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTK---------IKIEILIPDFRNQINHVL 157 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~---------~~i~~~~~~~~~~~~e~l 157 (293)
.++.++-+++++.|.+.|++.|-+. .| ... +.-.+.++.|.+..+. ..+..+..-...+++-.+
T Consensus 102 ~fs~eeKi~Ia~~L~~~GVd~IEvG--~P-a~s----~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId~a~ 174 (503)
T PLN03228 102 SLTPPQKLEIARQLAKLRVDIMEVG--FP-GSS----EEEFEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEAAW 174 (503)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEe--CC-CCC----HHHHHHHHHHHHhcccccccccccceEEeeecccCHhhHHHHH
Confidence 5899999999999999999987653 32 222 2333446666543211 122222211111123344
Q ss_pred HHHHHcCCCeeeeccccchHH-HhhcCC--CCCHHHHHHHHHHHHHhCCCceeeEeEEeec---CCC-HHHHHHHHHHHH
Q psy2895 158 KIFKQALPDVLNHNIETVPRL-YKKVRP--GSDYKHSLNLLKNFKKLYPNILTKSGIMVGL---GEN-DEEILTVIHDMR 230 (293)
Q Consensus 158 ~~l~~aG~~~i~~~less~~~-~~~i~~--~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~---gEt-~ed~~~~l~~l~ 230 (293)
+.++.+|.+++++.+-+|+-. ..++++ ....+...+.++.++++ |+. .+.+|. +.+ .+.+.+.++.+.
T Consensus 175 ~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~--G~~---~v~f~~EDa~Rtd~efl~~~~~~a~ 249 (503)
T PLN03228 175 EALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSL--GFH---DIQFGCEDGGRSDKEFLCKILGEAI 249 (503)
T ss_pred HhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCc---eEEeccccccccCHHHHHHHHHHHH
Confidence 444445788888776566544 334443 23556677788889988 874 134444 344 444678888888
Q ss_pred hCCCCEEEe
Q psy2895 231 NHNIDILTI 239 (293)
Q Consensus 231 ~l~~~~i~i 239 (293)
+.|++.+.+
T Consensus 250 ~~Gad~I~l 258 (503)
T PLN03228 250 KAGATSVGI 258 (503)
T ss_pred hcCCCEEEE
Confidence 999998766
No 191
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=96.06 E-value=0.51 Score=40.57 Aligned_cols=130 Identities=12% Similarity=0.048 Sum_probs=82.7
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCe
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDV 167 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~ 167 (293)
.+.-.+.++++++.+.|++.+++-=-+....|+..+ =.++++.+++..| +.++++.. .. ...++.+.++|++.
T Consensus 22 ad~~~l~~el~~l~~~g~d~lHiDVMDG~FVPNitf--Gp~~i~~i~~~~~-~DvHLMv~--~P--~~~i~~~~~aGad~ 94 (228)
T PRK08091 22 SNWLKFNETLTTLSENQLRLLHFDIADGQFSPFFTV--GAIAIKQFPTHCF-KDVHLMVR--DQ--FEVAKACVAAGADI 94 (228)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCcccc--CHHHHHHhCCCCC-EEEEeccC--CH--HHHHHHHHHhCCCE
Confidence 345678888899999999988875433211122111 1234455544333 57777652 11 66889999999999
Q ss_pred eeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEeecCCCC
Q psy2895 168 LNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIGQYLMP 245 (293)
Q Consensus 168 i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p 245 (293)
+.+..|+. .+..+.++.+++. |+.+.+++.+.-+...+.+...+. .+|.+-+. -..|
T Consensus 95 It~H~Ea~-------------~~~~~~l~~Ik~~--g~~~kaGlalnP~Tp~~~i~~~l~-----~vD~VLiM-tV~P 151 (228)
T PRK08091 95 VTLQVEQT-------------HDLALTIEWLAKQ--KTTVLIGLCLCPETPISLLEPYLD-----QIDLIQIL-TLDP 151 (228)
T ss_pred EEEcccCc-------------ccHHHHHHHHHHC--CCCceEEEEECCCCCHHHHHHHHh-----hcCEEEEE-EECC
Confidence 99988853 1244677788888 987777777766666666655544 36666665 3345
No 192
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=95.94 E-value=0.56 Score=45.01 Aligned_cols=139 Identities=14% Similarity=0.116 Sum_probs=80.6
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCC--CCCCChhHHHHHHHHHHhhCCCcEEEEEc---C--CCcC---c-HHH
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDD--LHDGGSSHFVSCIKHIRKLSTKIKIEILI---P--DFRN---Q-INH 155 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~--l~~~~~~~~~~ll~~i~~~~~~~~i~~~~---~--~~~~---~-~~e 155 (293)
.++.++.+.++..+.+.|+..|-..||..-+ +.... +.=.+.++.+++..|+..+.... + ++.. + ++.
T Consensus 23 r~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~-Edpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~ 101 (499)
T PRK12330 23 RMAMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLN-EDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDR 101 (499)
T ss_pred cCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccC-CCHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHH
Confidence 4789999999999999999988777665322 11111 11235667777777777666543 1 2211 1 245
Q ss_pred HHHHHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeE--EeecCCCHHHHHHHHHHHHhCC
Q psy2895 156 VLKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGI--MVGLGENDEEILTVIHDMRNHN 233 (293)
Q Consensus 156 ~l~~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~--ivG~gEt~ed~~~~l~~l~~l~ 233 (293)
.++...++|+|.+.+..-.+ +.+.....++.++++ |..+...+ .++--.|.+.+.+.++.+.+.|
T Consensus 102 fv~~a~~~Gidi~RIfd~ln-----------dv~nl~~ai~~vk~a--g~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~G 168 (499)
T PRK12330 102 FVEKSAENGMDVFRVFDALN-----------DPRNLEHAMKAVKKV--GKHAQGTICYTVSPIHTVEGFVEQAKRLLDMG 168 (499)
T ss_pred HHHHHHHcCCCEEEEEecCC-----------hHHHHHHHHHHHHHh--CCeEEEEEEEecCCCCCHHHHHHHHHHHHHcC
Confidence 67777788999987642211 123344445555555 55432222 2233445666666666666666
Q ss_pred CCEEEe
Q psy2895 234 IDILTI 239 (293)
Q Consensus 234 ~~~i~i 239 (293)
++.|.+
T Consensus 169 ad~I~I 174 (499)
T PRK12330 169 ADSICI 174 (499)
T ss_pred CCEEEe
Confidence 665554
No 193
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=95.91 E-value=0.9 Score=44.11 Aligned_cols=146 Identities=13% Similarity=0.128 Sum_probs=94.0
Q ss_pred CCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCC-CcEEEEEc----CCCcCcHHHHHHHH
Q psy2895 86 DPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLST-KIKIEILI----PDFRNQINHVLKIF 160 (293)
Q Consensus 86 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~-~~~i~~~~----~~~~~~~~e~l~~l 160 (293)
..++.++-+++++.|.+.|++.|-+ |.| ..+ ... .+.++.|.+... +..|..+. ++.....+..++.+
T Consensus 18 ~~~s~eeKl~Ia~~L~~~GVd~IE~--G~p-~~s---~~d-~~~v~~i~~~~~~~~~i~~~~r~~r~~~~~~~d~~~ea~ 90 (526)
T TIGR00977 18 VSFSLEDKIRIAERLDDLGIHYIEG--GWP-GAN---PKD-VQFFWQLKEMNFKNAKIVAFCSTRRPHKKVEEDKMLQAL 90 (526)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEE--eCC-CCC---hHH-HHHHHHHHHhCCCCcEEEEEeeecCCCCCCchHHHHHHH
Confidence 3689999999999999999998765 322 111 122 234455544322 23444432 23221115578888
Q ss_pred HHcCCCeeeeccccchHHHh-hcCC--CCCHHHHHHHHHHHHHhCCCceeeEeEE---eecCCCHHHHHHHHHHHHhCCC
Q psy2895 161 KQALPDVLNHNIETVPRLYK-KVRP--GSDYKHSLNLLKNFKKLYPNILTKSGIM---VGLGENDEEILTVIHDMRNHNI 234 (293)
Q Consensus 161 ~~aG~~~i~~~less~~~~~-~i~~--~~~~e~~l~~i~~~~~~~pgi~~~~~~i---vG~gEt~ed~~~~l~~l~~l~~ 234 (293)
.++|.+.+++.+-+|+-..+ +++. ....+...+.++.++++ |..+..... -|..-+++.+.+.++.+.+.|+
T Consensus 91 ~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~--g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~~aGa 168 (526)
T TIGR00977 91 IKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQ--GDEVIYDAEHFFDGYKANPEYALATLATAQQAGA 168 (526)
T ss_pred hcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCeEEEEeeeeeecccCCHHHHHHHHHHHHhCCC
Confidence 89999999987766643333 3442 22455566678889999 887653222 3444567889999999999999
Q ss_pred CEEEee
Q psy2895 235 DILTIG 240 (293)
Q Consensus 235 ~~i~i~ 240 (293)
+.+.+.
T Consensus 169 d~i~i~ 174 (526)
T TIGR00977 169 DWLVLC 174 (526)
T ss_pred CeEEEe
Confidence 988773
No 194
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=95.81 E-value=0.21 Score=44.18 Aligned_cols=86 Identities=15% Similarity=0.093 Sum_probs=55.8
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeee-cCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCC-CcCcHHHHHHHHHHcC
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSV-NRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPD-FRNQINHVLKIFKQAL 164 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg-~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~-~~~~~~e~l~~l~~aG 164 (293)
.+++|||.+.+.++.+.|+.-+++-.= +.+.-+..+.+.|.++++.|++..|++-+.+++.+ ...+.++.++.+....
T Consensus 22 P~tpeEia~~A~~c~~AGAa~vH~H~R~~~~G~~s~d~~~~~e~~~~IR~~~pd~iv~~Ttg~~~~~~~~~R~~~v~~~~ 101 (272)
T PF05853_consen 22 PITPEEIAADAVACYEAGAAIVHIHARDDEDGRPSLDPELYAEVVEAIRAACPDLIVQPTTGGGGGPDPEERLAHVEAWK 101 (272)
T ss_dssp --SHHHHHHHHHHHHHHTESEEEE-EE-TTTS-EE--HHHHHHHHHHHHHHSTTSEEEEESSTTTTSGHHHHCTHHHHH-
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCHHHHHHHHHhcC
Confidence 478999999999999999998888765 22111224578999999999999889888887742 2222255555554435
Q ss_pred CCeeeecc
Q psy2895 165 PDVLNHNI 172 (293)
Q Consensus 165 ~~~i~~~l 172 (293)
.+..+++.
T Consensus 102 pd~asl~~ 109 (272)
T PF05853_consen 102 PDMASLNP 109 (272)
T ss_dssp -SEEEEE-
T ss_pred CCeEEecc
Confidence 66666543
No 195
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=95.65 E-value=0.92 Score=43.18 Aligned_cols=139 Identities=14% Similarity=0.155 Sum_probs=80.2
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCC--CCCCChhHHHHHHHHHHhhCCCcEEEEEc---C--CCcC---c-HHH
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDD--LHDGGSSHFVSCIKHIRKLSTKIKIEILI---P--DFRN---Q-INH 155 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~--l~~~~~~~~~~ll~~i~~~~~~~~i~~~~---~--~~~~---~-~~e 155 (293)
.++.++++.++..+.+.|+..+-+.||-.-+ +.....+. .+-++.+++..|+..+.... + ++.. + ++.
T Consensus 31 r~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~edp-werlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~ 109 (468)
T PRK12581 31 RLSIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNEDP-WERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDK 109 (468)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCH-HHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHH
Confidence 4889999999999999999988777775422 11111111 25566777777776666533 1 2221 2 144
Q ss_pred HHHHHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec--CCCHHHHHHHHHHHHhCC
Q psy2895 156 VLKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL--GENDEEILTVIHDMRNHN 233 (293)
Q Consensus 156 ~l~~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~--gEt~ed~~~~l~~l~~l~ 233 (293)
.++...+.|+|.+.+. +.++ ..+.....++.+++. |..+...+.+-. ..|.+-+.+.++.+.+.|
T Consensus 110 fv~~a~~~Gidi~Rif--------d~ln---d~~n~~~ai~~ak~~--G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~G 176 (468)
T PRK12581 110 FISLSAQNGIDVFRIF--------DALN---DPRNIQQALRAVKKT--GKEAQLCIAYTTSPVHTLNYYLSLVKELVEMG 176 (468)
T ss_pred HHHHHHHCCCCEEEEc--------ccCC---CHHHHHHHHHHHHHc--CCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcC
Confidence 5777778899887653 1122 444455556666666 664432222211 334455666666666666
Q ss_pred CCEEEe
Q psy2895 234 IDILTI 239 (293)
Q Consensus 234 ~~~i~i 239 (293)
++.|.+
T Consensus 177 ad~I~I 182 (468)
T PRK12581 177 ADSICI 182 (468)
T ss_pred CCEEEE
Confidence 666555
No 196
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=95.31 E-value=0.78 Score=45.09 Aligned_cols=83 Identities=13% Similarity=0.162 Sum_probs=52.6
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCC--CCCCChhHHHHHHHHHHhhCCCcEEEEEc-----CCCc---Cc-HHH
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDD--LHDGGSSHFVSCIKHIRKLSTKIKIEILI-----PDFR---NQ-INH 155 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~--l~~~~~~~~~~ll~~i~~~~~~~~i~~~~-----~~~~---~~-~~e 155 (293)
.++.++++.++..+.+.|+..+-+.||..-+ +... .+.=.+.++.+++..|++.+.... +++. ++ ++.
T Consensus 22 r~~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl-~edpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~ 100 (596)
T PRK14042 22 RMRTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFL-KEDPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRA 100 (596)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEeeCCcccceeeccc-CCCHHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHH
Confidence 4789999999999999999988777775311 1111 111135567777777777666543 1322 11 244
Q ss_pred HHHHHHHcCCCeeee
Q psy2895 156 VLKIFKQALPDVLNH 170 (293)
Q Consensus 156 ~l~~l~~aG~~~i~~ 170 (293)
.++...+.|+|.+.+
T Consensus 101 ~v~~a~~~Gidv~Ri 115 (596)
T PRK14042 101 FVKLAVNNGVDVFRV 115 (596)
T ss_pred HHHHHHHcCCCEEEE
Confidence 677777889988765
No 197
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=94.53 E-value=2.6 Score=35.75 Aligned_cols=128 Identities=16% Similarity=0.192 Sum_probs=88.1
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCe
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDV 167 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~ 167 (293)
.+.+.+...++....-|+.+|-+.. + .++++.+++.. ++-+|.+. .+ ++.+-.-.+||.|.
T Consensus 24 Fd~~~V~~i~~AA~~ggAt~vDIAa-d------------p~LV~~~~~~s---~lPICVSa-Ve--p~~f~~aV~AGAdl 84 (242)
T PF04481_consen 24 FDAESVAAIVKAAEIGGATFVDIAA-D------------PELVKLAKSLS---NLPICVSA-VE--PELFVAAVKAGADL 84 (242)
T ss_pred cCHHHHHHHHHHHHccCCceEEecC-C------------HHHHHHHHHhC---CCCeEeec-CC--HHHHHHHHHhCCCE
Confidence 5788899998888777888776542 1 15556565532 33344332 22 44444445689999
Q ss_pred eeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEe
Q psy2895 168 LNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTI 239 (293)
Q Consensus 168 i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i 239 (293)
+.+| ..|..|.+ .+..+.+++++..+.-|+..|++.++.++-- .-..++-..+...|.++|+|.|.-
T Consensus 85 iEIG--NfDsFY~q-Gr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPH--iL~ld~Qv~LA~~L~~~GaDiIQT 151 (242)
T PF04481_consen 85 IEIG--NFDSFYAQ-GRRFSAEEVLALTRETRSLLPDITLSVTVPH--ILPLDQQVQLAEDLVKAGADIIQT 151 (242)
T ss_pred EEec--chHHHHhc-CCeecHHHHHHHHHHHHHhCCCCceEEecCc--cccHHHHHHHHHHHHHhCCcEEEc
Confidence 8875 23677765 3366899999999999999999987776543 334456678888889999998754
No 198
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=94.52 E-value=2.5 Score=35.65 Aligned_cols=114 Identities=18% Similarity=0.144 Sum_probs=78.2
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCC
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPD 166 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~ 166 (293)
..+.++..+.++.+.+.|++.+-++--. +.-.+.++.+++.+|++.|-.- ..++ .+.++...++|.+
T Consensus 16 ~~~~e~a~~~~~al~~~Gi~~iEit~~t---------~~a~~~i~~l~~~~~~~~vGAG--TVl~--~~~a~~a~~aGA~ 82 (204)
T TIGR01182 16 IDDVDDALPLAKALIEGGLRVLEVTLRT---------PVALDAIRLLRKEVPDALIGAG--TVLN--PEQLRQAVDAGAQ 82 (204)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeCCC---------ccHHHHHHHHHHHCCCCEEEEE--eCCC--HHHHHHHHHcCCC
Confidence 3578999999999999999987776432 2345788888888875444332 2344 7889999999998
Q ss_pred eeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEeec
Q psy2895 167 VLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIGQ 241 (293)
Q Consensus 167 ~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~ 241 (293)
.+- + |+.+. +.++.+++. |+.. +.| --|+.|+... .+.|.+.+-+||
T Consensus 83 Fiv-s------------P~~~~----~v~~~~~~~--~i~~----iPG-~~TptEi~~A----~~~Ga~~vKlFP 129 (204)
T TIGR01182 83 FIV-S------------PGLTP----ELAKHAQDH--GIPI----IPG-VATPSEIMLA----LELGITALKLFP 129 (204)
T ss_pred EEE-C------------CCCCH----HHHHHHHHc--CCcE----ECC-CCCHHHHHHH----HHCCCCEEEECC
Confidence 763 2 22221 667778888 7754 334 3577776554 558888888764
No 199
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=94.46 E-value=2.8 Score=37.31 Aligned_cols=138 Identities=10% Similarity=0.125 Sum_probs=81.8
Q ss_pred CCCChhHHHHHHHHHHHCCCcEEEEeeecC-CCCCC----CChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHH
Q psy2895 86 DPLDIEEPKKIAYTINKLKLNYVVITSVNR-DDLHD----GGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIF 160 (293)
Q Consensus 86 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~-~~l~~----~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l 160 (293)
...+++++++.++++.+.|+.-|-+.|... |.... ...+++..+++.+++.. ++.|.+ |+.. .++++.-
T Consensus 33 ~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~-~~~ISI---DT~~--~~va~~A 106 (282)
T PRK11613 33 THNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF-EVWISV---DTSK--PEVIRES 106 (282)
T ss_pred CCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeEEE---ECCC--HHHHHHH
Confidence 346899999999999999999887765432 21111 12345677778877543 334444 3333 5666666
Q ss_pred HHcCCCeee-e-ccccchHHHh---hc-------C-CC--CC--------------HHHHHHHHHHHHHhCCCc---eee
Q psy2895 161 KQALPDVLN-H-NIETVPRLYK---KV-------R-PG--SD--------------YKHSLNLLKNFKKLYPNI---LTK 208 (293)
Q Consensus 161 ~~aG~~~i~-~-~less~~~~~---~i-------~-~~--~~--------------~e~~l~~i~~~~~~~pgi---~~~ 208 (293)
-++|++.++ + ++. .+++++ +. + ++ .+ .+...+.++.+.++ |+ .+-
T Consensus 107 L~~GadiINDI~g~~-d~~~~~~~a~~~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~--GI~~~~Ii 183 (282)
T PRK11613 107 AKAGAHIINDIRSLS-EPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAA--GIAKEKLL 183 (282)
T ss_pred HHcCCCEEEECCCCC-CHHHHHHHHHcCCCEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHHc--CCChhhEE
Confidence 667888773 2 332 122222 11 1 10 01 12344666778888 98 566
Q ss_pred EeEEeecCCCHHHHHHHHHHHHhC
Q psy2895 209 SGIMVGLGENDEEILTVIHDMRNH 232 (293)
Q Consensus 209 ~~~ivG~gEt~ed~~~~l~~l~~l 232 (293)
.|--+|||.|.++=.+++..+..+
T Consensus 184 lDPGiGF~k~~~~n~~ll~~l~~l 207 (282)
T PRK11613 184 LDPGFGFGKNLSHNYQLLARLAEF 207 (282)
T ss_pred EeCCCCcCCCHHHHHHHHHHHHHH
Confidence 666678888887766666665443
No 200
>PRK14847 hypothetical protein; Provisional
Probab=94.33 E-value=2.9 Score=38.08 Aligned_cols=138 Identities=8% Similarity=0.045 Sum_probs=78.0
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCC---CcEEEEEcCCCcCcHHHHHHHHHHc
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLST---KIKIEILIPDFRNQINHVLKIFKQA 163 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~---~~~i~~~~~~~~~~~~e~l~~l~~a 163 (293)
.++.++=+++++.+.+.|++.|-.+ . |... .+. .+.++.|.+... +..+..++.....+++..++....+
T Consensus 50 ~fs~eeKl~IA~~L~~lGVd~IEvG--~-Pa~s---~~e-~e~ir~I~~~~~~~~~~~i~~~~r~~~~dId~a~e~~~~~ 122 (333)
T PRK14847 50 PMDGARKLRLFEQLVAVGLKEIEVA--F-PSAS---QTD-FDFVRKLIDERRIPDDVTIEALTQSRPDLIARTFEALAGS 122 (333)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEee--C-CCCC---HHH-HHHHHHHHHhCCCCCCcEEEEEecCcHHHHHHHHHHhCCC
Confidence 5899999999999999999987643 3 2222 222 456666655421 3445554432222223455555555
Q ss_pred CCCeeeeccccchHHHh-hcCCCCCHHH----HHHHHHHHHHhCCCcee---eEeEEeec---CCC-HHHHHHHHHHHHh
Q psy2895 164 LPDVLNHNIETVPRLYK-KVRPGSDYKH----SLNLLKNFKKLYPNILT---KSGIMVGL---GEN-DEEILTVIHDMRN 231 (293)
Q Consensus 164 G~~~i~~~less~~~~~-~i~~~~~~e~----~l~~i~~~~~~~pgi~~---~~~~ivG~---gEt-~ed~~~~l~~l~~ 231 (293)
+.+++++.+-+|+-..+ +++ ++.++ ..++++.+++. |... ...+-+|. .-| .+-+.+.++.+.+
T Consensus 123 ~~~~Vhi~~p~Sd~h~~~kl~--~s~~~vl~~~~~~v~~Ak~~--~~~~~g~~~~V~~~~EDasRad~dfL~~~~~~a~~ 198 (333)
T PRK14847 123 PRAIVHLYNPIAPQWRRIVFG--MSRAEIKEIALAGTRQIRAL--ADANPGTQWIYEYSPETFSLAELDFAREVCDAVSA 198 (333)
T ss_pred CCCEEEEEecCCHHHHHHHhC--CCHHHHHHHHHHHHHHHHHh--ccccCCCceEEEEeeecCCCCCHHHHHHHHHHHHH
Confidence 66779988877765444 343 34444 44566777877 5421 11355665 223 3444555555534
Q ss_pred C-CCC
Q psy2895 232 H-NID 235 (293)
Q Consensus 232 l-~~~ 235 (293)
. |++
T Consensus 199 ~~ga~ 203 (333)
T PRK14847 199 IWGPT 203 (333)
T ss_pred HhCCC
Confidence 3 543
No 201
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=94.08 E-value=3.1 Score=37.90 Aligned_cols=142 Identities=17% Similarity=0.228 Sum_probs=79.4
Q ss_pred HHHHHCCCcEEEEeeecCCCC-CCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcC--------------c----------
Q psy2895 98 YTINKLKLNYVVITSVNRDDL-HDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRN--------------Q---------- 152 (293)
Q Consensus 98 ~~~~~~G~~~i~l~gg~~~~l-~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~--------------~---------- 152 (293)
+-+.+.|+..|.|---..|.- -..+.++..++.+++++.+-.+-+.+..+|+-. +
T Consensus 31 ~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~~v~~ 110 (332)
T PF07745_consen 31 QILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLAKAVYD 110 (332)
T ss_dssp HHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHHHHHHH
T ss_pred HHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHHHHHHH
Confidence 334567888776643332211 123567888888888887433334443332211 0
Q ss_pred -HHHHHHHHHHcCC--CeeeeccccchHHHhhcCCCCCHHHHHHHH----HHHHHhCCCceeeEeEEeec--CCCHHHHH
Q psy2895 153 -INHVLKIFKQALP--DVLNHNIETVPRLYKKVRPGSDYKHSLNLL----KNFKKLYPNILTKSGIMVGL--GENDEEIL 223 (293)
Q Consensus 153 -~~e~l~~l~~aG~--~~i~~~less~~~~~~i~~~~~~e~~l~~i----~~~~~~~pgi~~~~~~ivG~--gEt~ed~~ 223 (293)
+.++|..|+++|+ +.+.+|=|+...++--..+..+++.....+ +.+|+..|.+. +|+.+ +...+.+.
T Consensus 111 yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~~k----V~lH~~~~~~~~~~~ 186 (332)
T PF07745_consen 111 YTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPNIK----VMLHLANGGDNDLYR 186 (332)
T ss_dssp HHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSSTSE----EEEEES-TTSHHHHH
T ss_pred HHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCCCc----EEEEECCCCchHHHH
Confidence 2678899999986 567887666444443333344666655554 44555545554 46665 77777788
Q ss_pred HHHHHHHhCC--CCEEEeecCCC
Q psy2895 224 TVIHDMRNHN--IDILTIGQYLM 244 (293)
Q Consensus 224 ~~l~~l~~l~--~~~i~i~~~~~ 244 (293)
..++.+++.| .|.|.++ |++
T Consensus 187 ~~f~~l~~~g~d~DviGlS-yYP 208 (332)
T PF07745_consen 187 WFFDNLKAAGVDFDVIGLS-YYP 208 (332)
T ss_dssp HHHHHHHHTTGG-SEEEEE-E-S
T ss_pred HHHHHHHhcCCCcceEEEe-cCC
Confidence 8888888866 5678886 554
No 202
>PRK14057 epimerase; Provisional
Probab=94.01 E-value=3.9 Score=35.76 Aligned_cols=127 Identities=8% Similarity=0.110 Sum_probs=78.4
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecC---CCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcC
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNR---DDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQAL 164 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~---~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG 164 (293)
.+.-.+.++++++.+.|++.+++-=-+. |.+. .+. ++++.+++..| +.++++.. .. +..++.+.++|
T Consensus 29 aD~~~L~~el~~l~~~g~d~lHiDVMDG~FVPNit-fGp----~~i~~i~~~~p-~DvHLMV~--~P--~~~i~~~~~aG 98 (254)
T PRK14057 29 GQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFT-VGP----WAVGQLPQTFI-KDVHLMVA--DQ--WTAAQACVKAG 98 (254)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEeccCCccCCccc-cCH----HHHHHhccCCC-eeEEeeeC--CH--HHHHHHHHHhC
Confidence 3456788889999999999887754332 3331 122 34455544333 57787652 11 56889999999
Q ss_pred CCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCce-------eeEeEEeecCCCHHHHHHHHHHHHhCCCCEE
Q psy2895 165 PDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNIL-------TKSGIMVGLGENDEEILTVIHDMRNHNIDIL 237 (293)
Q Consensus 165 ~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~-------~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i 237 (293)
.|.+.+..|+.+ +..+.++.+|++ |++ +.+++.+.-+...+.+...+. .+|.+
T Consensus 99 ad~It~H~Ea~~-------------~~~~~l~~Ir~~--G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~-----~vD~V 158 (254)
T PRK14057 99 AHCITLQAEGDI-------------HLHHTLSWLGQQ--TVPVIGGEMPVIRGISLCPATPLDVIIPILS-----DVEVI 158 (254)
T ss_pred CCEEEEeecccc-------------CHHHHHHHHHHc--CCCcccccccceeEEEECCCCCHHHHHHHHH-----hCCEE
Confidence 999999888531 134566777777 764 345555554555555554443 36666
Q ss_pred EeecCCCC
Q psy2895 238 TIGQYLMP 245 (293)
Q Consensus 238 ~i~~~~~p 245 (293)
-+. -..|
T Consensus 159 LvM-tV~P 165 (254)
T PRK14057 159 QLL-AVNP 165 (254)
T ss_pred EEE-EECC
Confidence 665 3344
No 203
>PLN02321 2-isopropylmalate synthase
Probab=93.96 E-value=2.9 Score=41.48 Aligned_cols=147 Identities=13% Similarity=0.015 Sum_probs=78.0
Q ss_pred CCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCC-CcE-EEEEcCCCcCcHHHHHHHHHHc
Q psy2895 86 DPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLST-KIK-IEILIPDFRNQINHVLKIFKQA 163 (293)
Q Consensus 86 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~-~~~-i~~~~~~~~~~~~e~l~~l~~a 163 (293)
..++.++-+++++.|.+.|++.|-++ .+ ..+..+.+.+..+.+.+....+ +.. ..++...-.. .+-++...++
T Consensus 103 ~~~s~eeKl~Ia~~L~~lGVd~IEvG--fP-~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~--~~dId~A~~a 177 (632)
T PLN02321 103 ATLTSKEKLDIARQLAKLGVDIIEAG--FP-IASPDDLEAVKTIAKEVGNEVDEDGYVPVICGLSRCN--KKDIDAAWEA 177 (632)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEe--Cc-CCCccHHHHHHHHHHhcccCCCccccceeeeeehhcc--HHhHHHHHHH
Confidence 35899999999999999999988653 21 1222223333333332211100 111 1122111011 3334444444
Q ss_pred --C--CCeeeeccccchHHH-hhcCC--CCCHHHHHHHHHHHHHhCCCce-eeEeEEeecCCCHHHHHHHHHHHHhCCCC
Q psy2895 164 --L--PDVLNHNIETVPRLY-KKVRP--GSDYKHSLNLLKNFKKLYPNIL-TKSGIMVGLGENDEEILTVIHDMRNHNID 235 (293)
Q Consensus 164 --G--~~~i~~~less~~~~-~~i~~--~~~~e~~l~~i~~~~~~~pgi~-~~~~~ivG~gEt~ed~~~~l~~l~~l~~~ 235 (293)
+ ..++++.+-+|+-.. .+++. ....+...+.++.++++ |.. +..+.--+..-+.+.+.+.++.+.+.|++
T Consensus 178 l~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~--G~~~v~fs~EDa~rtd~d~l~~~~~~a~~aGa~ 255 (632)
T PLN02321 178 VKHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSL--GCEDVEFSPEDAGRSDPEFLYRILGEVIKAGAT 255 (632)
T ss_pred hcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCceEEEecccCCCCCHHHHHHHHHHHHHcCCC
Confidence 2 235776654554332 23432 22445555667778887 763 33332222234567777888888999998
Q ss_pred EEEe
Q psy2895 236 ILTI 239 (293)
Q Consensus 236 ~i~i 239 (293)
.+.+
T Consensus 256 ~I~L 259 (632)
T PLN02321 256 TLNI 259 (632)
T ss_pred EEEe
Confidence 8766
No 204
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=93.93 E-value=2.1 Score=35.90 Aligned_cols=114 Identities=16% Similarity=0.116 Sum_probs=75.5
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCC
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPD 166 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~ 166 (293)
..+.++..+.++.+.+.|++.+-+|--.+ ...+.++.+++.+|++.+-.-| .++ .+.++...++|.+
T Consensus 16 ~~~~~~a~~~~~al~~gGi~~iEiT~~t~---------~a~~~I~~l~~~~p~~~vGAGT--V~~--~e~a~~a~~aGA~ 82 (196)
T PF01081_consen 16 GDDPEDAVPIAEALIEGGIRAIEITLRTP---------NALEAIEALRKEFPDLLVGAGT--VLT--AEQAEAAIAAGAQ 82 (196)
T ss_dssp TSSGGGHHHHHHHHHHTT--EEEEETTST---------THHHHHHHHHHHHTTSEEEEES----S--HHHHHHHHHHT-S
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEecCCc---------cHHHHHHHHHHHCCCCeeEEEe--ccC--HHHHHHHHHcCCC
Confidence 45789999999999999999877764332 3457888888888876555533 344 7889999999998
Q ss_pred eeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEeec
Q psy2895 167 VLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIGQ 241 (293)
Q Consensus 167 ~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~ 241 (293)
.+--+ +.+ -+.++.++++ |+.+-.+. -|+.|+... .++|.+.+-+||
T Consensus 83 FivSP-------------~~~----~~v~~~~~~~--~i~~iPG~-----~TptEi~~A----~~~G~~~vK~FP 129 (196)
T PF01081_consen 83 FIVSP-------------GFD----PEVIEYAREY--GIPYIPGV-----MTPTEIMQA----LEAGADIVKLFP 129 (196)
T ss_dssp EEEES-------------S------HHHHHHHHHH--TSEEEEEE-----SSHHHHHHH----HHTT-SEEEETT
T ss_pred EEECC-------------CCC----HHHHHHHHHc--CCcccCCc-----CCHHHHHHH----HHCCCCEEEEec
Confidence 65422 212 2566788888 88653433 477777555 468999988864
No 205
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=93.61 E-value=3.7 Score=35.41 Aligned_cols=131 Identities=11% Similarity=0.082 Sum_probs=67.1
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCc-------CcHHHHHHHH
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFR-------NQINHVLKIF 160 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~-------~~~~e~l~~l 160 (293)
+++..+.+..+.+..+ +..+-|++|... +. +.+.+.+.++..+++ +|.+++.|+. +..++.++..
T Consensus 9 l~~~~~~d~Le~~g~y-ID~lKfg~Gt~~-l~--~~~~l~eki~la~~~----~V~v~~GGtl~E~~~~q~~~~~Yl~~~ 80 (237)
T TIGR03849 9 LPPKFVEDYLKVCGDY-ITFVKFGWGTSA-LI--DRDIVKEKIEMYKDY----GIKVYPGGTLFEIAHSKGKFDEYLNEC 80 (237)
T ss_pred CCHHHHHHHHHHhhhh-eeeEEecCceEe-ec--cHHHHHHHHHHHHHc----CCeEeCCccHHHHHHHhhhHHHHHHHH
Confidence 3444444444433332 455556666532 21 123466666665554 4556554321 1135666677
Q ss_pred HHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec--C-----CCHHHHHHHHHHHHhCC
Q psy2895 161 KQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL--G-----ENDEEILTVIHDMRNHN 233 (293)
Q Consensus 161 ~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~--g-----Et~ed~~~~l~~l~~l~ 233 (293)
++.|++.+-++--+. .-+.+++++.++.+++. |+.+-+- +|. . .+.+++.+.++.-.+.|
T Consensus 81 k~lGf~~IEiS~G~~---------~i~~~~~~rlI~~~~~~--g~~v~~E--vG~K~~~~~~~~~~~~~i~~~~~~LeAG 147 (237)
T TIGR03849 81 DELGFEAVEISDGSM---------EISLEERCNLIERAKDN--GFMVLSE--VGKKSPEKDSELTPDDRIKLINKDLEAG 147 (237)
T ss_pred HHcCCCEEEEcCCcc---------CCCHHHHHHHHHHHHhC--CCeEecc--ccccCCcccccCCHHHHHHHHHHHHHCC
Confidence 788888777652210 22556666666666666 6644332 232 1 34455555555555566
Q ss_pred CCEEEe
Q psy2895 234 IDILTI 239 (293)
Q Consensus 234 ~~~i~i 239 (293)
.+.+-+
T Consensus 148 A~~Vii 153 (237)
T TIGR03849 148 ADYVII 153 (237)
T ss_pred CcEEEE
Confidence 665544
No 206
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.58 E-value=2.4 Score=35.75 Aligned_cols=114 Identities=14% Similarity=0.135 Sum_probs=76.2
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCC
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPD 166 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~ 166 (293)
..+.++..+.++.+.+.|++.+-+|--.+ .-.+.++.+++.+|++.|-.-| .++ .+.++...++|.+
T Consensus 12 ~~~~~~a~~ia~al~~gGi~~iEit~~tp---------~a~~~I~~l~~~~~~~~vGAGT--Vl~--~e~a~~ai~aGA~ 78 (201)
T PRK06015 12 IDDVEHAVPLARALAAGGLPAIEITLRTP---------AALDAIRAVAAEVEEAIVGAGT--ILN--AKQFEDAAKAGSR 78 (201)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCCc---------cHHHHHHHHHHHCCCCEEeeEe--CcC--HHHHHHHHHcCCC
Confidence 35789999999999999999777664332 3457788888877764444322 344 7889999999998
Q ss_pred eeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEeec
Q psy2895 167 VLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIGQ 241 (293)
Q Consensus 167 ~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~ 241 (293)
.+--+ ..+ -+.++.++++ |+.. +.| --|+.|+... .+.|.+.+-+||
T Consensus 79 FivSP-------------~~~----~~vi~~a~~~--~i~~----iPG-~~TptEi~~A----~~~Ga~~vK~FP 125 (201)
T PRK06015 79 FIVSP-------------GTT----QELLAAANDS--DVPL----LPG-AATPSEVMAL----REEGYTVLKFFP 125 (201)
T ss_pred EEECC-------------CCC----HHHHHHHHHc--CCCE----eCC-CCCHHHHHHH----HHCCCCEEEECC
Confidence 65422 222 2455677777 6644 333 3477776554 457888887764
No 207
>KOG2550|consensus
Probab=93.40 E-value=0.65 Score=42.90 Aligned_cols=124 Identities=9% Similarity=0.042 Sum_probs=79.7
Q ss_pred HHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeeecccc
Q psy2895 95 KIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNHNIET 174 (293)
Q Consensus 95 ~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~les 174 (293)
...+.+...|++.|+|-+.... ..+..++++.|++.+|+..| ......+ .+..+.|.++|+|.+.++.-+
T Consensus 254 ~rl~ll~~aGvdvviLDSSqGn------S~~qiemik~iK~~yP~l~V--iaGNVVT--~~qa~nLI~aGaDgLrVGMGs 323 (503)
T KOG2550|consen 254 ERLDLLVQAGVDVVILDSSQGN------SIYQLEMIKYIKETYPDLQI--IAGNVVT--KEQAANLIAAGADGLRVGMGS 323 (503)
T ss_pred HHHHHhhhcCCcEEEEecCCCc------chhHHHHHHHHHhhCCCcee--eccceee--HHHHHHHHHccCceeEecccc
Confidence 3445556789999998665542 35778999999999996544 3323344 788999999999999988765
Q ss_pred -c----hHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEe
Q psy2895 175 -V----PRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTI 239 (293)
Q Consensus 175 -s----~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i 239 (293)
| .++.. ..++ .--.+.++.+.++.. |+++-++- =-++..++... -.+|.+.+-+
T Consensus 324 GSiCiTqevma-~Grp-Q~TAVy~va~~A~q~--gvpviADG---Giq~~Ghi~KA----l~lGAstVMm 382 (503)
T KOG2550|consen 324 GSICITQKVMA-CGRP-QGTAVYKVAEFANQF--GVPCIADG---GIQNVGHVVKA----LGLGASTVMM 382 (503)
T ss_pred Cceeeeceeee-ccCC-cccchhhHHHHHHhc--CCceeecC---CcCccchhHhh----hhcCchhhee
Confidence 4 33332 1122 223477888888888 88765542 13455555433 3356554443
No 208
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=93.33 E-value=1.8 Score=37.94 Aligned_cols=138 Identities=12% Similarity=0.139 Sum_probs=78.5
Q ss_pred CCCChhHHHHHHHHHHHCCCcEEEEeeecC-CCCC----CCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHH
Q psy2895 86 DPLDIEEPKKIAYTINKLKLNYVVITSVNR-DDLH----DGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIF 160 (293)
Q Consensus 86 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~-~~l~----~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l 160 (293)
..++.+++++.+.+..+.|+.-|-+.|... |... ..+.+++..+++.+++.. +..+.+ |+.. .+.+++-
T Consensus 19 ~~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~-~~plSI---DT~~--~~v~e~a 92 (257)
T cd00739 19 RFLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGEL-DVLISV---DTFR--AEVARAA 92 (257)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCcEEE---eCCC--HHHHHHH
Confidence 457899999999999999999888754321 2111 112345666777777643 233443 3233 5556554
Q ss_pred HHcCCCeee-ecccc-chHHHh---hc-------CC-C--CC----------HHH----HHHHHHHHHHhCCCc---eee
Q psy2895 161 KQALPDVLN-HNIET-VPRLYK---KV-------RP-G--SD----------YKH----SLNLLKNFKKLYPNI---LTK 208 (293)
Q Consensus 161 ~~aG~~~i~-~~les-s~~~~~---~i-------~~-~--~~----------~e~----~l~~i~~~~~~~pgi---~~~ 208 (293)
-++|.+.++ ++.+. .+++++ +. +. + .+ .++ ..+.++.+.++ |+ .+-
T Consensus 93 l~~G~~iINdisg~~~~~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--Gi~~~~Ii 170 (257)
T cd00739 93 LEAGADIINDVSGGSDDPAMLEVAAEYGAPLVLMHMRGTPKTMQENPYYEDVVDEVLSFLEARLEAAESA--GVARNRII 170 (257)
T ss_pred HHhCCCEEEeCCCCCCChHHHHHHHHcCCCEEEECCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHc--CCCHHHEE
Confidence 456777665 44332 233332 11 11 1 01 122 44556667888 98 466
Q ss_pred EeEEeecCCCHHHHHHHHHHHHh
Q psy2895 209 SGIMVGLGENDEEILTVIHDMRN 231 (293)
Q Consensus 209 ~~~ivG~gEt~ed~~~~l~~l~~ 231 (293)
.+-.+|++.|.++-.++++.++.
T Consensus 171 ~DPg~gf~ks~~~~~~~l~~i~~ 193 (257)
T cd00739 171 LDPGIGFGKTPEHNLELLRRLDE 193 (257)
T ss_pred EecCCCcccCHHHHHHHHHHHHH
Confidence 77777887776555555554443
No 209
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.29 E-value=1.9 Score=41.39 Aligned_cols=130 Identities=11% Similarity=0.176 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeee
Q psy2895 91 EEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNH 170 (293)
Q Consensus 91 eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~ 170 (293)
+++.+.++.+.+.|++.|.+-.-+.. ...+.++++.|++.+|+.. +...+..+ .|....|.++|+|.+.+
T Consensus 226 ~~~~~~a~~Lv~aGvd~i~~D~a~~~------~~~~~~~i~~ik~~~p~~~--v~agnv~t--~~~a~~l~~aGad~v~v 295 (479)
T PRK07807 226 GDVAAKARALLEAGVDVLVVDTAHGH------QEKMLEALRAVRALDPGVP--IVAGNVVT--AEGTRDLVEAGADIVKV 295 (479)
T ss_pred hhHHHHHHHHHHhCCCEEEEeccCCc------cHHHHHHHHHHHHHCCCCe--EEeeccCC--HHHHHHHHHcCCCEEEE
Confidence 56778889999999999887544432 3588999999999988644 33322333 67778888999999987
Q ss_pred cccc-c---hHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 171 NIET-V---PRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 171 ~les-s---~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
++=+ | -+.+-....+ .+.-+.++.+.+++. |+++-+ -|--.+..|+...+. +|.+.+-+.
T Consensus 296 gig~gsictt~~~~~~~~p-~~~av~~~~~~~~~~--~~~via---~ggi~~~~~~~~al~----~ga~~v~~g 359 (479)
T PRK07807 296 GVGPGAMCTTRMMTGVGRP-QFSAVLECAAAAREL--GAHVWA---DGGVRHPRDVALALA----AGASNVMIG 359 (479)
T ss_pred CccCCcccccccccCCchh-HHHHHHHHHHHHHhc--CCcEEe---cCCCCCHHHHHHHHH----cCCCeeecc
Confidence 7644 3 2222222221 455566666666666 665422 233467777766554 687776665
No 210
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=93.19 E-value=2.2 Score=37.84 Aligned_cols=112 Identities=19% Similarity=0.155 Sum_probs=66.3
Q ss_pred ChhHHHHHHHHHHhhCCCcEEEEEcCC-CcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHH
Q psy2895 122 GSSHFVSCIKHIRKLSTKIKIEILIPD-FRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFK 199 (293)
Q Consensus 122 ~~~~~~~ll~~i~~~~~~~~i~~~~~~-~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~ 199 (293)
+.+.+.+.++..++..++..+-+...+ ...+..+.++.+.++|+|.+.+++-+ .....+.+ ..+.+...+.++.++
T Consensus 81 g~~~~~~~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~--~~~~~~~~eiv~~vr 158 (289)
T cd02810 81 GLDVWLQDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQL--GQDPEAVANLLKAVK 158 (289)
T ss_pred CHHHHHHHHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCccc--ccCHHHHHHHHHHHH
Confidence 355666655555443122222221111 11122456777778889988887644 11111111 236777888888888
Q ss_pred HhCCCceeeEeEEeec--CCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 200 KLYPNILTKSGIMVGL--GENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 200 ~~~pgi~~~~~~ivG~--gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
+.. ++ -+++.+ +.+.++..+.++.+.+.|++.+.+.
T Consensus 159 ~~~-~~----pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~ 196 (289)
T cd02810 159 AAV-DI----PLLVKLSPYFDLEDIVELAKAAERAGADGLTAI 196 (289)
T ss_pred Hcc-CC----CEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 763 33 344544 6778899999999999999998875
No 211
>PLN02540 methylenetetrahydrofolate reductase
Probab=93.17 E-value=4.4 Score=39.57 Aligned_cols=60 Identities=17% Similarity=0.219 Sum_probs=43.5
Q ss_pred CCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCC------CCChhHHHHHHHHHHhhCCC-cEEEEE
Q psy2895 86 DPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLH------DGGSSHFVSCIKHIRKLSTK-IKIEIL 145 (293)
Q Consensus 86 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~------~~~~~~~~~ll~~i~~~~~~-~~i~~~ 145 (293)
+.++.+++.+.+..+.+.|++.|....|+++.-. ...+.+..+|++.|++.+.+ +.|-+.
T Consensus 68 rd~n~~~L~~~L~~a~~~GIrNILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~gd~f~IgVA 134 (565)
T PLN02540 68 TNMPVEKIDHALETIKSNGIQNILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYGDYFGITVA 134 (565)
T ss_pred cCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCCCCceEEEe
Confidence 3467788999999999999999988888864221 12346788999999987543 455553
No 212
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=93.14 E-value=3.3 Score=36.38 Aligned_cols=123 Identities=17% Similarity=0.197 Sum_probs=66.3
Q ss_pred HHHHHHHHHcCCCeeeeccccch----------HHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCC-HHHH
Q psy2895 154 NHVLKIFKQALPDVLNHNIETVP----------RLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGEN-DEEI 222 (293)
Q Consensus 154 ~e~l~~l~~aG~~~i~~~less~----------~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt-~ed~ 222 (293)
.+.+..|.++|+|.+-+|+--|+ ...+.+..+.+.++.++.++.+++..+++++ .+|.=.+.- .--+
T Consensus 34 ~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pi--vlm~Y~Npi~~~Gi 111 (265)
T COG0159 34 LEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPI--VLMTYYNPIFNYGI 111 (265)
T ss_pred HHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCE--EEEEeccHHHHhhH
Confidence 55666666677777766553321 2223345577899999999999987333333 222211221 1224
Q ss_pred HHHHHHHHhCCCCEEEeecCCCCCC----------CccccccccChhH-HHHHHHHHHH-hcccchhcc
Q psy2895 223 LTVIHDMRNHNIDILTIGQYLMPSR----------LHLPVHRYLHPKF-FEKFKKIAYK-LGFKNVLVG 279 (293)
Q Consensus 223 ~~~l~~l~~l~~~~i~i~~~~~p~~----------~~~a~~r~~~p~~-~~~~~~~~~~-~G~~~~~~~ 279 (293)
.+.++.+++.|++.+-+ +=+|+.. ..++.-.++.|.. .+++.+.+.. .||-|+-+.
T Consensus 112 e~F~~~~~~~GvdGliv-pDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~ 179 (265)
T COG0159 112 EKFLRRAKEAGVDGLLV-PDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVSR 179 (265)
T ss_pred HHHHHHHHHcCCCEEEe-CCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEec
Confidence 45577778889988766 3444321 1222223444433 3445544443 477776544
No 213
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=93.06 E-value=5.1 Score=35.33 Aligned_cols=120 Identities=17% Similarity=0.139 Sum_probs=71.6
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCC------CChhHHHHHHHHHHhhC-CCcEEEE-EcC-CC--cCcHHH
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHD------GGSSHFVSCIKHIRKLS-TKIKIEI-LIP-DF--RNQINH 155 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~------~~~~~~~~ll~~i~~~~-~~~~i~~-~~~-~~--~~~~~e 155 (293)
.++..++.+.+..+.+.|++.|++.+|+++...+ ....+-.++++.+++.. +++.+.+ ..| +. ..+.+.
T Consensus 69 ~~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~~~~~~~~igva~yPe~hp~~~~~~~ 148 (274)
T cd00537 69 DRNRIELQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKENGGGFSIGVAAYPEGHPEAPSLEE 148 (274)
T ss_pred CCCHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCCCccccccCCCcCCCCCCHHH
Confidence 3566889999999999999999999888653311 23345678888888753 3344443 223 11 111133
Q ss_pred HHHHHH---HcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-C-CCHHHH
Q psy2895 156 VLKIFK---QALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-G-ENDEEI 222 (293)
Q Consensus 156 ~l~~l~---~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-g-Et~ed~ 222 (293)
.+++|+ ++|.+.+-- +- -++.+.+.+.++.+++. |+ ..-++.|+ + .+...+
T Consensus 149 ~~~~L~~Ki~aGA~f~iT-----Q~-------~fd~~~~~~~~~~~~~~--gi--~vPIi~GI~p~~s~~~l 204 (274)
T cd00537 149 DIKRLKRKVDAGADFIIT-----QL-------FFDNDAFLRFVDRCRAA--GI--TVPIIPGIMPLTSYKQA 204 (274)
T ss_pred HHHHHHHHHHCCCCEEee-----cc-------cccHHHHHHHHHHHHHc--CC--CCCEEeeccccCCHHHH
Confidence 344433 467765421 11 23556677777788888 87 34677887 4 343443
No 214
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=93.02 E-value=5.8 Score=34.75 Aligned_cols=139 Identities=13% Similarity=0.145 Sum_probs=77.1
Q ss_pred CCCChhHHHHHHHHHHHCCCcEEEEeeec-CCCCCCC----ChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHH
Q psy2895 86 DPLDIEEPKKIAYTINKLKLNYVVITSVN-RDDLHDG----GSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIF 160 (293)
Q Consensus 86 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~-~~~l~~~----~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l 160 (293)
...+++++++.+++..+.|+..|-+.|.. .|..... +.+++..+++.+++.. ++.+.+=| .. .+.++.-
T Consensus 18 ~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~-~~plsiDT---~~--~~vi~~a 91 (257)
T TIGR01496 18 RFLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQP-DVPISVDT---YR--AEVARAA 91 (257)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeEEEeC---CC--HHHHHHH
Confidence 34789999999999999999998874322 1221111 2235777778777643 33444422 22 4555554
Q ss_pred HHcCCCeeee-ccccchHHHhhcC----------C-C--CC----------HHH----HHHHHHHHHHhCCCce---eeE
Q psy2895 161 KQALPDVLNH-NIETVPRLYKKVR----------P-G--SD----------YKH----SLNLLKNFKKLYPNIL---TKS 209 (293)
Q Consensus 161 ~~aG~~~i~~-~less~~~~~~i~----------~-~--~~----------~e~----~l~~i~~~~~~~pgi~---~~~ 209 (293)
-++|.+.++- +.+..+++.+.+. . + .+ .++ ..+.++.+.+. |+. +-.
T Consensus 92 l~~G~~iINsis~~~~~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--Gi~~~~iil 169 (257)
T TIGR01496 92 LEAGADIINDVSGGQDPAMLEVAAEYGVPLVLMHMRGTPRTMQENPHYEDVVEEVLRFLEARAEELVAA--GVAAERIIL 169 (257)
T ss_pred HHcCCCEEEECCCCCCchhHHHHHHcCCcEEEEeCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHc--CCCHHHEEE
Confidence 4567777652 3321122222111 0 1 11 222 33445667778 883 445
Q ss_pred eEEeecCCCHHHHHHHHHHHHhC
Q psy2895 210 GIMVGLGENDEEILTVIHDMRNH 232 (293)
Q Consensus 210 ~~ivG~gEt~ed~~~~l~~l~~l 232 (293)
+=.+|++.|.++-.++++.++.+
T Consensus 170 DPg~gf~ks~~~~~~~l~~i~~l 192 (257)
T TIGR01496 170 DPGIGFGKTPEHNLELLKHLEEF 192 (257)
T ss_pred ECCCCcccCHHHHHHHHHHHHHH
Confidence 55567866777666666666544
No 215
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=92.95 E-value=6.3 Score=34.99 Aligned_cols=135 Identities=10% Similarity=0.047 Sum_probs=81.1
Q ss_pred CChhHHHHHHHHHHHCC-----CcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHH
Q psy2895 88 LDIEEPKKIAYTINKLK-----LNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQ 162 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G-----~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~ 162 (293)
.+.++=++.++.+.+.| ++.|-+.+ +. .....++.+.+........+.... ..+ .+-+++..+
T Consensus 18 ~~~~~Kv~i~~~L~~~G~~~~~v~~IE~~s-----~~---~~d~~~v~~~~~~~~~~~~v~~~~---r~~-~~die~A~~ 85 (279)
T cd07947 18 YTVEQIVKIYDYLHELGGGSGVIRQTEFFL-----YT---EKDREAVEACLDRGYKFPEVTGWI---RAN-KEDLKLVKE 85 (279)
T ss_pred CCHHHHHHHHHHHHHcCCCCCccceEEecC-----cC---hHHHHHHHHHHHcCCCCCEEEEEe---cCC-HHHHHHHHH
Confidence 48999999999999999 99887622 21 134444444333211011343322 111 445677778
Q ss_pred cCCCeeeeccccchHHH-hhcCCC--CCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHH--------HHHHHHHHHHh
Q psy2895 163 ALPDVLNHNIETVPRLY-KKVRPG--SDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDE--------EILTVIHDMRN 231 (293)
Q Consensus 163 aG~~~i~~~less~~~~-~~i~~~--~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~e--------d~~~~l~~l~~ 231 (293)
+|++.+++.+-+|+... +++++. ...+.+.+.++.+++. |+.+..++ - +.+.. -+.+.++.+.+
T Consensus 86 ~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~--g~~v~~~~-e--d~~r~d~~~~v~~~~~~~~~~~~~ 160 (279)
T cd07947 86 MGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDH--GIKPRCHL-E--DITRADIYGFVLPFVNKLMKLSKE 160 (279)
T ss_pred cCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHC--CCeEEEEE-E--cccCCCcccchHHHHHHHHHHHHH
Confidence 99999998775565544 345533 3566677778888888 88765443 2 33333 23444555566
Q ss_pred CCCC-EEEe
Q psy2895 232 HNID-ILTI 239 (293)
Q Consensus 232 l~~~-~i~i 239 (293)
.|++ .+.+
T Consensus 161 ~G~~~~i~l 169 (279)
T cd07947 161 SGIPVKIRL 169 (279)
T ss_pred CCCCEEEEe
Confidence 8998 5655
No 216
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=92.94 E-value=6.2 Score=34.85 Aligned_cols=113 Identities=15% Similarity=0.133 Sum_probs=70.4
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCCC----CCCChhHHHHHHHHHHhhCCCcEEEEE-cC-CCc--CcHHHHHH
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDDL----HDGGSSHFVSCIKHIRKLSTKIKIEIL-IP-DFR--NQINHVLK 158 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l----~~~~~~~~~~ll~~i~~~~~~~~i~~~-~~-~~~--~~~~e~l~ 158 (293)
.++..++.+.+..+.+.|++.|+..+|+++.. ....+++-.+|++.+++..+++.|-+. .| +.. .+.++.++
T Consensus 69 ~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~ 148 (272)
T TIGR00676 69 GATREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIE 148 (272)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHH
Confidence 36788899999999999999998777776421 112345677888988887666666553 34 221 11133344
Q ss_pred HHH---HcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec
Q psy2895 159 IFK---QALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL 215 (293)
Q Consensus 159 ~l~---~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~ 215 (293)
+|+ ++|.+.+- . +- -++.+.+.+.++.+++. |+. .-++.|+
T Consensus 149 ~L~~K~~aGA~f~i-T----Q~-------~fd~~~~~~~~~~~~~~--gi~--~PIi~Gi 192 (272)
T TIGR00676 149 NLKRKVDAGADYAI-T----QL-------FFDNDDYYRFVDRCRAA--GID--VPIIPGI 192 (272)
T ss_pred HHHHHHHcCCCeEe-e----cc-------ccCHHHHHHHHHHHHHc--CCC--CCEeccc
Confidence 333 57887432 1 11 23566666667778887 774 3677777
No 217
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=92.77 E-value=5 Score=34.13 Aligned_cols=71 Identities=15% Similarity=0.030 Sum_probs=51.6
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCC
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPD 166 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~ 166 (293)
..+.++..+.++.+.+.|++-|-++--. +.-.+.++.+++.+|+..|-.-| .++ .+.++...++|.+
T Consensus 23 ~~~~~~a~~i~~al~~~Gi~~iEitl~~---------~~~~~~I~~l~~~~p~~~IGAGT--Vl~--~~~a~~a~~aGA~ 89 (212)
T PRK05718 23 INKLEDAVPLAKALVAGGLPVLEVTLRT---------PAALEAIRLIAKEVPEALIGAGT--VLN--PEQLAQAIEAGAQ 89 (212)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCC---------ccHHHHHHHHHHHCCCCEEEEee--ccC--HHHHHHHHHcCCC
Confidence 4679999999999999999987776211 23457788888888864443322 233 7888999999998
Q ss_pred eeee
Q psy2895 167 VLNH 170 (293)
Q Consensus 167 ~i~~ 170 (293)
.+..
T Consensus 90 Fivs 93 (212)
T PRK05718 90 FIVS 93 (212)
T ss_pred EEEC
Confidence 7653
No 218
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=92.76 E-value=6.9 Score=34.90 Aligned_cols=80 Identities=6% Similarity=0.001 Sum_probs=54.5
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEc-C--CCcCcHHHHHHHHHHcC
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILI-P--DFRNQINHVLKIFKQAL 164 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~-~--~~~~~~~e~l~~l~~aG 164 (293)
.+++.+.+.++.+.+.|+..|.|.--.. ...+..+.++++.+++..++..+.+.. + |+.. ...+..+ ++|
T Consensus 152 ~~~~~~~~~~~~~~~~G~d~i~l~DT~G----~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~--AN~laA~-~aG 224 (287)
T PRK05692 152 VPPEAVADVAERLFALGCYEISLGDTIG----VGTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQAL--ANIYASL-EEG 224 (287)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEeccccC----ccCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcHH--HHHHHHH-HhC
Confidence 5788899999999999998887742221 122567888999998877655555543 2 3322 4466666 589
Q ss_pred CCeeeecccc
Q psy2895 165 PDVLNHNIET 174 (293)
Q Consensus 165 ~~~i~~~les 174 (293)
++.+..++.+
T Consensus 225 ~~~id~s~~G 234 (287)
T PRK05692 225 ITVFDASVGG 234 (287)
T ss_pred CCEEEEEccc
Confidence 9998877655
No 219
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=92.71 E-value=1.7 Score=39.85 Aligned_cols=133 Identities=15% Similarity=0.123 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeee
Q psy2895 91 EEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNH 170 (293)
Q Consensus 91 eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~ 170 (293)
++-.+.++.+.+.|+..+++-+.+. ..+++.+.++.+++.+|++.|-.- ...+ .+..+.|.++|+|.+.+
T Consensus 107 ~~~~er~~~L~~agvD~ivID~a~g------~s~~~~~~ik~ik~~~~~~~viaG--NV~T--~e~a~~L~~aGad~vkV 176 (352)
T PF00478_consen 107 DDDFERAEALVEAGVDVIVIDSAHG------HSEHVIDMIKKIKKKFPDVPVIAG--NVVT--YEGAKDLIDAGADAVKV 176 (352)
T ss_dssp TCHHHHHHHHHHTT-SEEEEE-SST------TSHHHHHHHHHHHHHSTTSEEEEE--EE-S--HHHHHHHHHTT-SEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEccccCc------cHHHHHHHHHHHHHhCCCceEEec--ccCC--HHHHHHHHHcCCCEEEE
Confidence 3457777888889999998876553 246889999999999986555432 2233 78888999999999998
Q ss_pred cccc-c---hHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEeecCC
Q psy2895 171 NIET-V---PRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIGQYL 243 (293)
Q Consensus 171 ~les-s---~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~~~ 243 (293)
++=. | -+.-.-+..+ ..--+.++.+.+++. ++++.+|-= -.+.-|+... -..|.+.+-+...+
T Consensus 177 GiGpGsiCtTr~v~GvG~P-Q~tAv~~~a~~a~~~--~v~iIADGG---i~~sGDi~KA----la~GAd~VMlG~ll 243 (352)
T PF00478_consen 177 GIGPGSICTTREVTGVGVP-QLTAVYECAEAARDY--GVPIIADGG---IRTSGDIVKA----LAAGADAVMLGSLL 243 (352)
T ss_dssp SSSSSTTBHHHHHHSBSCT-HHHHHHHHHHHHHCT--TSEEEEESS----SSHHHHHHH----HHTT-SEEEESTTT
T ss_pred eccCCcccccccccccCCc-HHHHHHHHHHHhhhc--cCceeecCC---cCcccceeee----eeecccceeechhh
Confidence 8754 4 2333333333 455577777788877 877655521 2455565544 34788988776343
No 220
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=92.67 E-value=3.5 Score=36.21 Aligned_cols=133 Identities=12% Similarity=0.110 Sum_probs=78.2
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHc--C
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQA--L 164 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~a--G 164 (293)
..+.+.+++.+++..+.|+.-|-+.++.. +..+.+.+..+++.+++.. ++.+.+=| .. .+.++.--++ |
T Consensus 21 ~~d~~~i~~~A~~~~~~GAdiIDVg~~~~---~~eE~~r~~~~v~~l~~~~-~~plsIDT---~~--~~v~eaaL~~~~G 91 (261)
T PRK07535 21 AKDAAFIQKLALKQAEAGADYLDVNAGTA---VEEEPETMEWLVETVQEVV-DVPLCIDS---PN--PAAIEAGLKVAKG 91 (261)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCCC---chhHHHHHHHHHHHHHHhC-CCCEEEeC---CC--HHHHHHHHHhCCC
Confidence 46889999999999999999988876643 2233567888888887653 34454422 22 4444443344 6
Q ss_pred CCeee-ecccc--chHHHhhcC-------------C--CCCHH----HHHHHHHHHHHhCCCc---eeeEeEEeec-CCC
Q psy2895 165 PDVLN-HNIET--VPRLYKKVR-------------P--GSDYK----HSLNLLKNFKKLYPNI---LTKSGIMVGL-GEN 218 (293)
Q Consensus 165 ~~~i~-~~les--s~~~~~~i~-------------~--~~~~e----~~l~~i~~~~~~~pgi---~~~~~~ivG~-gEt 218 (293)
.+.++ ++.+. .+++...+. + +.+.+ ...+.++.+.++ |+ .+-.|-.+|. |-+
T Consensus 92 ~~iINsIs~~~~~~~~~~~l~~~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~--GI~~~~IilDPgi~~~~~~ 169 (261)
T PRK07535 92 PPLINSVSAEGEKLEVVLPLVKKYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEY--GIPPEDIYIDPLVLPLSAA 169 (261)
T ss_pred CCEEEeCCCCCccCHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHc--CCCHhHEEEeCCCCcccCC
Confidence 66554 33322 233322111 1 11233 344456667888 99 5777777774 666
Q ss_pred HHHHHHHHHHHH
Q psy2895 219 DEEILTVIHDMR 230 (293)
Q Consensus 219 ~ed~~~~l~~l~ 230 (293)
.++..++++.++
T Consensus 170 ~~~~~~~l~~i~ 181 (261)
T PRK07535 170 QDAGPEVLETIR 181 (261)
T ss_pred hHHHHHHHHHHH
Confidence 666645554443
No 221
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=92.60 E-value=2 Score=41.12 Aligned_cols=133 Identities=13% Similarity=0.169 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeee
Q psy2895 91 EEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNH 170 (293)
Q Consensus 91 eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~ 170 (293)
+++.+.++.+.+.|++.|++-.-+. ....+.++++.|++.+|++.+-+ |...+ .+....|.++|+|.+.+
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D~a~g------~~~~~~~~i~~i~~~~~~~~vi~---g~~~t-~~~~~~l~~~G~d~i~v 293 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVIDTAHG------HQVKMISAIKAVRALDLGVPIVA---GNVVS-AEGVRDLLEAGANIIKV 293 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEeCCCC------CcHHHHHHHHHHHHHCCCCeEEE---eccCC-HHHHHHHHHhCCCEEEE
Confidence 6778888999999999988855442 13689999999999887654433 32222 78889999999999987
Q ss_pred cccc-c---hHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEeecCC
Q psy2895 171 NIET-V---PRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIGQYL 243 (293)
Q Consensus 171 ~les-s---~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~~~ 243 (293)
+.-+ + -+.+.....+ ...-.+++.+.+++. |+++-++ |=-.+..|+...+ .+|.+.+-+..++
T Consensus 294 g~g~Gs~~ttr~~~~~g~~-~~~a~~~~~~~~~~~--~~~viad---Ggi~~~~di~kal----a~GA~~vm~g~~~ 360 (475)
T TIGR01303 294 GVGPGAMCTTRMMTGVGRP-QFSAVLECAAEARKL--GGHVWAD---GGVRHPRDVALAL----AAGASNVMVGSWF 360 (475)
T ss_pred CCcCCccccCccccCCCCc-hHHHHHHHHHHHHHc--CCcEEEe---CCCCCHHHHHHHH----HcCCCEEeechhh
Confidence 7644 3 2222222222 566677888888887 7654322 2246667766554 3788887775333
No 222
>PRK08005 epimerase; Validated
Probab=92.54 E-value=5.9 Score=33.62 Aligned_cols=124 Identities=10% Similarity=0.109 Sum_probs=74.7
Q ss_pred ChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhC-CCcEEEEEcCCCcCcHHHHHHHHHHcCCCe
Q psy2895 89 DIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLS-TKIKIEILIPDFRNQINHVLKIFKQALPDV 167 (293)
Q Consensus 89 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~-~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~ 167 (293)
+.-.+.++++++.+.|++.+++-=-+....|+..+ =.+.++.+++.. -.+.++++.. .. +..++.+.++|++.
T Consensus 11 d~~~l~~el~~l~~~g~d~lHiDvMDG~FVPN~tf--G~~~i~~l~~~t~~~~DvHLMv~--~P--~~~i~~~~~~gad~ 84 (210)
T PRK08005 11 DPLRYAEALTALHDAPLGSLHLDIEDTSFINNITF--GMKTIQAVAQQTRHPLSFHLMVS--SP--QRWLPWLAAIRPGW 84 (210)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeccCCCcCCcccc--CHHHHHHHHhcCCCCeEEEeccC--CH--HHHHHHHHHhCCCE
Confidence 45677888899999999988775433211122111 124555665532 1257777652 11 56889999999999
Q ss_pred eeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 168 LNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 168 i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
+.+..|+.+ +..+.++.+|+. |+.. ++-+.-+...+.+...+. .+|.+-+.
T Consensus 85 It~H~Ea~~-------------~~~~~l~~Ik~~--G~k~--GlAlnP~Tp~~~i~~~l~-----~vD~VlvM 135 (210)
T PRK08005 85 IFIHAESVQ-------------NPSEILADIRAI--GAKA--GLALNPATPLLPYRYLAL-----QLDALMIM 135 (210)
T ss_pred EEEcccCcc-------------CHHHHHHHHHHc--CCcE--EEEECCCCCHHHHHHHHH-----hcCEEEEE
Confidence 999888531 133566778888 8853 555544555555544433 45555554
No 223
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=92.33 E-value=3.9 Score=35.88 Aligned_cols=143 Identities=15% Similarity=0.144 Sum_probs=83.5
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCC---------------CCChhHHHHHHHHHHhhCCCcEEEEEc--C-CC
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLH---------------DGGSSHFVSCIKHIRKLSTKIKIEILI--P-DF 149 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~---------------~~~~~~~~~ll~~i~~~~~~~~i~~~~--~-~~ 149 (293)
-+.|.-.+.++.+.+.|+.-+-|.--..+.+. ....+...++++.+++.++.+.+-+++ + -+
T Consensus 28 P~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~ 107 (265)
T COG0159 28 PDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIF 107 (265)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHH
Confidence 36788888888888888887665322111111 122467888888888766665555543 2 11
Q ss_pred cCcHHHHHHHHHHcCCCeeee---ccccchHHHhhcC----------CCCCHHHHHHHHHHHHHhCCCce--eeEeEEee
Q psy2895 150 RNQINHVLKIFKQALPDVLNH---NIETVPRLYKKVR----------PGSDYKHSLNLLKNFKKLYPNIL--TKSGIMVG 214 (293)
Q Consensus 150 ~~~~~e~l~~l~~aG~~~i~~---~less~~~~~~i~----------~~~~~e~~l~~i~~~~~~~pgi~--~~~~~ivG 214 (293)
.--++..++.++++|+|.+-+ ++|-++++.+... ...+.+++++.+.... .|+. ++..-+.|
T Consensus 108 ~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a---~GFiY~vs~~GvTG 184 (265)
T COG0159 108 NYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAA---SGFIYYVSRMGVTG 184 (265)
T ss_pred HhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhC---CCcEEEEecccccC
Confidence 111256788999999999754 5554433333222 2345666766554442 2663 33333445
Q ss_pred c-CCCHHHHHHHHHHHHhCC
Q psy2895 215 L-GENDEEILTVIHDMRNHN 233 (293)
Q Consensus 215 ~-gEt~ed~~~~l~~l~~l~ 233 (293)
. .....++.+.++.++++-
T Consensus 185 ~~~~~~~~~~~~v~~vr~~~ 204 (265)
T COG0159 185 ARNPVSADVKELVKRVRKYT 204 (265)
T ss_pred CCcccchhHHHHHHHHHHhc
Confidence 5 343445778888888765
No 224
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=92.24 E-value=11 Score=37.11 Aligned_cols=140 Identities=11% Similarity=0.086 Sum_probs=79.9
Q ss_pred CCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhC---CCcEEEEEcCCCcCcHHHHHHHHHH
Q psy2895 86 DPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLS---TKIKIEILIPDFRNQINHVLKIFKQ 162 (293)
Q Consensus 86 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~---~~~~i~~~~~~~~~~~~e~l~~l~~ 162 (293)
..++.++=+++++.|.+.|+++|-++ .+ ... ..++ +.++.+.+.. ++..+..+++....+++..++.+..
T Consensus 43 ~~~s~e~Ki~ia~~L~~~Gvd~IE~G--fp-~~s---~~D~-e~v~~i~~~~l~~~~~~i~al~~~~~~did~a~~a~~~ 115 (564)
T TIGR00970 43 DPMSPARKRRYFDLLVRIGFKEIEVG--FP-SAS---QTDF-DFVREIIEQGAIPDDVTIQVLTQSREELIERTFEALSG 115 (564)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEe--CC-CCC---HHHH-HHHHHHHHhcCCCCCcEEEEEcCCchhhHHHHHHHhcC
Confidence 46899999999999999999987654 32 222 2333 3333343331 2345555554222212344555554
Q ss_pred cCCCeeeeccccchHHHh-hcCCC--CCHHHHHHHHHHHHHhCCCce----eeEeEEeec-CC----C-HHHHHHHHHHH
Q psy2895 163 ALPDVLNHNIETVPRLYK-KVRPG--SDYKHSLNLLKNFKKLYPNIL----TKSGIMVGL-GE----N-DEEILTVIHDM 229 (293)
Q Consensus 163 aG~~~i~~~less~~~~~-~i~~~--~~~e~~l~~i~~~~~~~pgi~----~~~~~ivG~-gE----t-~ed~~~~l~~l 229 (293)
++.+.+++.+-+|+-..+ +++.. ...+...+.++.++++ |.. +.+.+.+-+ +| + .+.+.+.++.+
T Consensus 116 ~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~--~~~~~~~~~~~~~v~f~~Ed~~r~d~~~l~~~~~~a 193 (564)
T TIGR00970 116 AKRATVHFYNATSILFREVVFRASRAEVQAIATDGTKLVRKC--TKQAAKYPGTQWRFEYSPESFSDTELEFAKEVCEAV 193 (564)
T ss_pred CCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHh--cccccccccceEEEEEecccCCCCCHHHHHHHHHHH
Confidence 555578887766654433 34322 2344455566667777 542 233333334 55 4 57778888888
Q ss_pred HhCCC
Q psy2895 230 RNHNI 234 (293)
Q Consensus 230 ~~l~~ 234 (293)
.+.|.
T Consensus 194 ~~ag~ 198 (564)
T TIGR00970 194 KEVWA 198 (564)
T ss_pred HHhCC
Confidence 88875
No 225
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=92.18 E-value=8.1 Score=34.35 Aligned_cols=117 Identities=18% Similarity=0.179 Sum_probs=70.9
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCC------CCCChhHHHHHHHHHHhhCCC-cEEEEE-cC-CC--cCcHHHH
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDL------HDGGSSHFVSCIKHIRKLSTK-IKIEIL-IP-DF--RNQINHV 156 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l------~~~~~~~~~~ll~~i~~~~~~-~~i~~~-~~-~~--~~~~~e~ 156 (293)
++.+++.+.+..+.+.|++.|...+|+++.. ....+++-.+|++.+++..+. +.|-+. .| +. ..+.+..
T Consensus 71 ~~~~~l~~~L~~~~~~Gi~niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~~~~~d 150 (281)
T TIGR00677 71 MPIEMIDDALERAYSNGIQNILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAESVELD 150 (281)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCCCCCCCCHHHH
Confidence 4567888888888999999998888886421 112346678899999876433 555543 35 21 1121222
Q ss_pred HHHHH---HcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec--CCCHH
Q psy2895 157 LKIFK---QALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL--GENDE 220 (293)
Q Consensus 157 l~~l~---~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~--gEt~e 220 (293)
+++|+ ++|.+.+- . +- -++.+.+.+.++.+++. |+. .-++.|+ -.+..
T Consensus 151 ~~~L~~Ki~aGA~f~i-T----Q~-------~Fd~~~~~~f~~~~~~~--gi~--~PIi~GI~pi~s~~ 203 (281)
T TIGR00677 151 LKYLKEKVDAGADFII-T----QL-------FYDVDNFLKFVNDCRAI--GID--CPIVPGIMPINNYA 203 (281)
T ss_pred HHHHHHHHHcCCCEee-c----cc-------eecHHHHHHHHHHHHHc--CCC--CCEEeeccccCCHH
Confidence 44444 47887432 1 11 23556666777778887 774 3567787 44444
No 226
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=92.16 E-value=8.5 Score=36.78 Aligned_cols=79 Identities=8% Similarity=0.076 Sum_probs=54.3
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcC---CCcCcHHHHHHHHHHcC
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIP---DFRNQINHVLKIFKQAL 164 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~---~~~~~~~e~l~~l~~aG 164 (293)
.+.+-..+.++++.+.|+..|.|.--.. -..+..+.++++.+++. +++.|.+.+- |+.. .-.+..+ ++|
T Consensus 160 ~t~~y~~~~a~~l~~~Gad~I~IkDtaG----~l~P~~v~~Lv~alk~~-~~~pi~~H~Hnt~GlA~--An~laAi-eAG 231 (468)
T PRK12581 160 HTLNYYLSLVKELVEMGADSICIKDMAG----ILTPKAAKELVSGIKAM-TNLPLIVHTHATSGISQ--MTYLAAV-EAG 231 (468)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEECCCCC----CcCHHHHHHHHHHHHhc-cCCeEEEEeCCCCccHH--HHHHHHH-HcC
Confidence 4667788999999999999988842211 11256888999999874 4566666542 4332 4456666 689
Q ss_pred CCeeeecccc
Q psy2895 165 PDVLNHNIET 174 (293)
Q Consensus 165 ~~~i~~~les 174 (293)
++.+..++.+
T Consensus 232 ad~vD~ai~g 241 (468)
T PRK12581 232 ADRIDTALSP 241 (468)
T ss_pred CCEEEeeccc
Confidence 9999887755
No 227
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=92.06 E-value=6.9 Score=37.43 Aligned_cols=80 Identities=13% Similarity=0.117 Sum_probs=56.1
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcC---CCcCcHHHHHHHHHHc
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIP---DFRNQINHVLKIFKQA 163 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~---~~~~~~~e~l~~l~~a 163 (293)
..+++.+.+.++++.+.|+..|.|.--.. -.....+.++++.+++..+ +.|.+.+- |+.. .-.+..+ ++
T Consensus 149 ~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G----~l~P~~v~~Lv~~lk~~~~-vpI~~H~Hnt~GlA~--AN~laAi-ea 220 (467)
T PRK14041 149 VHTLEYYLEFARELVDMGVDSICIKDMAG----LLTPKRAYELVKALKKKFG-VPVEVHSHCTTGLAS--LAYLAAV-EA 220 (467)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCccC----CcCHHHHHHHHHHHHHhcC-CceEEEecCCCCcHH--HHHHHHH-Hh
Confidence 35789999999999999999988842211 1125688899999998764 55666442 4332 4456665 68
Q ss_pred CCCeeeecccc
Q psy2895 164 LPDVLNHNIET 174 (293)
Q Consensus 164 G~~~i~~~les 174 (293)
|++.+..++.+
T Consensus 221 Gad~vD~sv~~ 231 (467)
T PRK14041 221 GADMFDTAISP 231 (467)
T ss_pred CCCEEEeeccc
Confidence 99999887654
No 228
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=92.01 E-value=7 Score=37.66 Aligned_cols=81 Identities=14% Similarity=0.106 Sum_probs=58.2
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCC-CcEEEEEcC---CCcCcHHHHHHHHHH
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLST-KIKIEILIP---DFRNQINHVLKIFKQ 162 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~-~~~i~~~~~---~~~~~~~e~l~~l~~ 162 (293)
..+++.+++.++++.+.|+..|.|.---. -.....+.++++.+++..| ++.|.+.+- |+.. .-.++.+ +
T Consensus 151 ~~t~e~~~~~a~~l~~~Gad~I~IkDtaG----ll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~--An~laAi-e 223 (499)
T PRK12330 151 IHTVEGFVEQAKRLLDMGADSICIKDMAA----LLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTL--VSLMKAI-E 223 (499)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCcc----CCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHH--HHHHHHH-H
Confidence 35899999999999999999988842211 1225788999999998875 666776542 4332 4456665 6
Q ss_pred cCCCeeeecccc
Q psy2895 163 ALPDVLNHNIET 174 (293)
Q Consensus 163 aG~~~i~~~les 174 (293)
+|++.+..++.+
T Consensus 224 AGad~vDtai~G 235 (499)
T PRK12330 224 AGVDVVDTAISS 235 (499)
T ss_pred cCCCEEEeeccc
Confidence 899999887665
No 229
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=91.99 E-value=0.99 Score=41.70 Aligned_cols=140 Identities=14% Similarity=0.163 Sum_probs=77.9
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecC-CCC-CCCChhHHHHHHHHHHhhCCCcEEEEEc---C--CCc---Cc-HHH
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNR-DDL-HDGGSSHFVSCIKHIRKLSTKIKIEILI---P--DFR---NQ-INH 155 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~-~~l-~~~~~~~~~~ll~~i~~~~~~~~i~~~~---~--~~~---~~-~~e 155 (293)
.+..++.+-+++.+.+.|+-..-+-||-. +.. ...+ ++=-+-++++++..|+..+.... + |+. ++ ++.
T Consensus 24 Rmrt~DmlPi~e~lD~~G~~slE~WGGATFDaciRfLn-EDPWeRLr~lk~~~~nT~LQMLlRGQNlvGYrhyaDDvVe~ 102 (472)
T COG5016 24 RMRTEDMLPIAEALDKVGYWSLEVWGGATFDACIRFLN-EDPWERLRELKKAVPNTKLQMLLRGQNLVGYRHYADDVVEK 102 (472)
T ss_pred HHhHHhhHHHHHHHHhcCeeEEEecCCccHHHHHHHhc-CCHHHHHHHHHHhCCCcHHHHHHccCccccccCCchHHHHH
Confidence 36789999999999999997775555542 100 0000 11225567777776654433221 1 211 11 134
Q ss_pred HHHHHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec--CCCHHHHHHHHHHHHhCC
Q psy2895 156 VLKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL--GENDEEILTVIHDMRNHN 233 (293)
Q Consensus 156 ~l~~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~--gEt~ed~~~~l~~l~~l~ 233 (293)
.+++..+.|+|.+.+ ++.++ +.......++.+++. |..+...+-+-. --|.+-+.+..+.+.++|
T Consensus 103 Fv~ka~~nGidvfRi--------FDAlN---D~RNl~~ai~a~kk~--G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g 169 (472)
T COG5016 103 FVEKAAENGIDVFRI--------FDALN---DVRNLKTAIKAAKKH--GAHVQGTISYTTSPVHTLEYYVELAKELLEMG 169 (472)
T ss_pred HHHHHHhcCCcEEEe--------chhcc---chhHHHHHHHHHHhc--CceeEEEEEeccCCcccHHHHHHHHHHHHHcC
Confidence 445555567776543 34444 223334455566666 665544444444 567777777777777777
Q ss_pred CCEEEee
Q psy2895 234 IDILTIG 240 (293)
Q Consensus 234 ~~~i~i~ 240 (293)
+|+|-|.
T Consensus 170 ~DSIciK 176 (472)
T COG5016 170 VDSICIK 176 (472)
T ss_pred CCEEEee
Confidence 7777663
No 230
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=91.97 E-value=4.7 Score=34.54 Aligned_cols=117 Identities=12% Similarity=0.038 Sum_probs=70.7
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCC
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPD 166 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~ 166 (293)
..+.++..+.++.+.+.|++.+-+|--.+. ..+.+.++.+++++.+|++.|-.- ..++ .+.++...++|.+
T Consensus 23 ~~~~~~a~~~~~al~~gGi~~iEiT~~tp~-----a~~~i~~l~~~~~~~~p~~~vGaG--TVl~--~e~a~~a~~aGA~ 93 (222)
T PRK07114 23 HADVEVAKKVIKACYDGGARVFEFTNRGDF-----AHEVFAELVKYAAKELPGMILGVG--SIVD--AATAALYIQLGAN 93 (222)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCCCc-----HHHHHHHHHHHHHhhCCCeEEeeE--eCcC--HHHHHHHHHcCCC
Confidence 357899999999999999997766643321 134455555555566665444332 2344 7888999999998
Q ss_pred eeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 167 VLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 167 ~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
.+--+ +.+ -+.++.+++. |+.. +-| --|+.|+... .+.|.+.+-+|
T Consensus 94 FiVsP-------------~~~----~~v~~~~~~~--~i~~----iPG-~~TpsEi~~A----~~~Ga~~vKlF 139 (222)
T PRK07114 94 FIVTP-------------LFN----PDIAKVCNRR--KVPY----SPG-CGSLSEIGYA----EELGCEIVKLF 139 (222)
T ss_pred EEECC-------------CCC----HHHHHHHHHc--CCCE----eCC-CCCHHHHHHH----HHCCCCEEEEC
Confidence 65322 212 1445566666 5543 233 2466665444 34677766665
No 231
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=91.95 E-value=6.1 Score=33.87 Aligned_cols=114 Identities=11% Similarity=0.138 Sum_probs=66.6
Q ss_pred ChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCC--CcEEEEEcCCCcCcHHHHHHHHHHcCCC
Q psy2895 89 DIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLST--KIKIEILIPDFRNQINHVLKIFKQALPD 166 (293)
Q Consensus 89 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~--~~~i~~~~~~~~~~~~e~l~~l~~aG~~ 166 (293)
+.-.+.++++.+.+.|++.+++-=-+....|+..+ =.++++.+++..+ .+.++++.. +.+..++.+.++|.+
T Consensus 14 d~~~l~~~i~~l~~~g~d~lHiDimDG~FVPN~tf--g~~~i~~lr~~~~~~~~dvHLMv~----~P~~~i~~~~~~gad 87 (223)
T PRK08745 14 DFARLGEEVDNVLKAGADWVHFDVMDNHYVPNLTI--GPMVCQALRKHGITAPIDVHLMVE----PVDRIVPDFADAGAT 87 (223)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCccCCCccc--CHHHHHHHHhhCCCCCEEEEeccC----CHHHHHHHHHHhCCC
Confidence 45577888888989999988775443211122111 1245566665411 256777652 115678999999999
Q ss_pred eeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHH
Q psy2895 167 VLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTV 225 (293)
Q Consensus 167 ~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~ 225 (293)
.+.+..|+.+ +..+.++.+|++ |+. +++.+.-+...+.+...
T Consensus 88 ~I~~H~Ea~~-------------~~~~~l~~Ir~~--g~k--~GlalnP~T~~~~i~~~ 129 (223)
T PRK08745 88 TISFHPEASR-------------HVHRTIQLIKSH--GCQ--AGLVLNPATPVDILDWV 129 (223)
T ss_pred EEEEcccCcc-------------cHHHHHHHHHHC--CCc--eeEEeCCCCCHHHHHHH
Confidence 9999888621 133455666666 663 34443334444444333
No 232
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=91.93 E-value=6.1 Score=32.39 Aligned_cols=131 Identities=8% Similarity=0.045 Sum_probs=79.7
Q ss_pred ChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCC--cEEEEEcC-CC----cCcHHHHHHHHH
Q psy2895 89 DIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTK--IKIEILIP-DF----RNQINHVLKIFK 161 (293)
Q Consensus 89 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~--~~i~~~~~-~~----~~~~~e~l~~l~ 161 (293)
+.+.+.+.++.+.+.|++.+++.| ++++.+.+..++ +.+-+.+. .. .....+.++..+
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g---------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~ 75 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP---------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAI 75 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH---------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHH
Confidence 678889999999999999887765 333333333222 33333222 11 222356777888
Q ss_pred HcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhC-CCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 162 QALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLY-PNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 162 ~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~-pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
++|+|.+.+... .+-. +..+.+...+.++.+.+.. +++++....+.+.--+.+.+.+..+.+.+.|++.+-.+
T Consensus 76 ~~Gad~i~v~~~----~~~~--~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~ 149 (201)
T cd00945 76 DLGADEIDVVIN----IGSL--KEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTS 149 (201)
T ss_pred HcCCCEEEEecc----HHHH--hCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeC
Confidence 899999876421 1211 1113566666666666653 36776555554432367778777777788999988764
No 233
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=91.89 E-value=4.7 Score=33.72 Aligned_cols=121 Identities=13% Similarity=0.099 Sum_probs=71.3
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEE----EEcCCCcCcHHHHHHHHHHc
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIE----ILIPDFRNQINHVLKIFKQA 163 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~----~~~~~~~~~~~e~l~~l~~a 163 (293)
.+.++..+.++.+ +.|++.|-++.- +. ...=.+.++.+++.+|+..+- ++.++ ...++.+.++
T Consensus 9 ~~~~~a~~~~~~l-~~~v~~iev~~~----l~---~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~-----~~~~~~~~~~ 75 (206)
T TIGR03128 9 LDIEEALELAEKV-ADYVDIIEIGTP----LI---KNEGIEAVKEMKEAFPDRKVLADLKTMDAG-----EYEAEQAFAA 75 (206)
T ss_pred CCHHHHHHHHHHc-ccCeeEEEeCCH----HH---HHhCHHHHHHHHHHCCCCEEEEEEeeccch-----HHHHHHHHHc
Confidence 5688899999888 677876655211 11 112246777887776543222 22221 1247888899
Q ss_pred CCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 164 LPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 164 G~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
|.|.+.+..++.. ....+.++.+++. |+.+...++ + ..| ..+.+..+.+++++.+.++
T Consensus 76 Gad~i~vh~~~~~------------~~~~~~i~~~~~~--g~~~~~~~~-~-~~t---~~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 76 GADIVTVLGVADD------------ATIKGAVKAAKKH--GKEVQVDLI-N-VKD---KVKRAKELKELGADYIGVH 133 (206)
T ss_pred CCCEEEEeccCCH------------HHHHHHHHHHHHc--CCEEEEEec-C-CCC---hHHHHHHHHHcCCCEEEEc
Confidence 9999987655421 2345677788888 886533211 1 122 2233344466799988775
No 234
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=91.88 E-value=8 Score=33.66 Aligned_cols=126 Identities=11% Similarity=0.054 Sum_probs=82.5
Q ss_pred hhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcC-CCcCcHHHHHHHHHHcCCCee
Q psy2895 90 IEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIP-DFRNQINHVLKIFKQALPDVL 168 (293)
Q Consensus 90 ~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~-~~~~~~~e~l~~l~~aG~~~i 168 (293)
.+.+.+.++.+.+.|+..++|..-+++ - ..+.+.+.++++... +..+++... |...+..+.++.|.+.|++++
T Consensus 72 ~~~M~~di~~~~~~GadGvV~G~L~~d-g-~vD~~~~~~Li~~a~----~~~vTFHRAfD~~~d~~~al~~l~~lG~~rI 145 (248)
T PRK11572 72 FAAMLEDIATVRELGFPGLVTGVLDVD-G-HVDMPRMRKIMAAAG----PLAVTFHRAFDMCANPLNALKQLADLGVARI 145 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeECCC-C-CcCHHHHHHHHHHhc----CCceEEechhhccCCHHHHHHHHHHcCCCEE
Confidence 455566777778899999888666542 1 234566777776653 356766554 544444678999999999987
Q ss_pred eeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 169 NHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 169 ~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
-=+-. ..+..+-++.++.+.+...+. . +|+|-|=+.+.+.+. .+.|+..++.+
T Consensus 146 LTSGg-----------~~~a~~g~~~L~~lv~~a~~~---~-Im~GgGV~~~Nv~~l----~~tG~~~~H~s 198 (248)
T PRK11572 146 LTSGQ-----------QQDAEQGLSLIMELIAASDGP---I-IMAGAGVRLSNLHKF----LDAGVREVHSS 198 (248)
T ss_pred ECCCC-----------CCCHHHHHHHHHHHHHhcCCC---E-EEeCCCCCHHHHHHH----HHcCCCEEeeC
Confidence 53211 123455566666666653342 2 899999999888775 25898888775
No 235
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=91.81 E-value=10 Score=37.43 Aligned_cols=79 Identities=13% Similarity=0.139 Sum_probs=56.0
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEc-C--CCcCcHHHHHHHHHHcC
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILI-P--DFRNQINHVLKIFKQAL 164 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~-~--~~~~~~~e~l~~l~~aG 164 (293)
.+++.+++.++++.+.|+..|.|.--.. ......+.++++.+++..+ +.|.+.+ + |+.. .-.+..+ ++|
T Consensus 151 ~t~~~~~~~a~~l~~~Gad~I~i~Dt~G----~~~P~~~~~lv~~lk~~~~-~pi~~H~Hnt~Gla~--An~laAv-~aG 222 (592)
T PRK09282 151 HTIEKYVELAKELEEMGCDSICIKDMAG----LLTPYAAYELVKALKEEVD-LPVQLHSHCTSGLAP--MTYLKAV-EAG 222 (592)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCcCC----CcCHHHHHHHHHHHHHhCC-CeEEEEEcCCCCcHH--HHHHHHH-HhC
Confidence 5789999999999999999988842221 1124688899999998764 5555544 2 4332 4466666 689
Q ss_pred CCeeeecccc
Q psy2895 165 PDVLNHNIET 174 (293)
Q Consensus 165 ~~~i~~~les 174 (293)
++.+...+.+
T Consensus 223 ad~vD~ai~g 232 (592)
T PRK09282 223 VDIIDTAISP 232 (592)
T ss_pred CCEEEeeccc
Confidence 9999887765
No 236
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=91.62 E-value=6.6 Score=33.72 Aligned_cols=101 Identities=9% Similarity=0.106 Sum_probs=61.7
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCc--EEEEEcCCCcCcHHHHHHHHHHcCC
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKI--KIEILIPDFRNQINHVLKIFKQALP 165 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~--~i~~~~~~~~~~~~e~l~~l~~aG~ 165 (293)
.++-.+.++++.+.+.|++.+++---+....|+... =.+.++.+++..|++ .+++++. +....++.+.++|+
T Consensus 16 ~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~--G~~~v~~lr~~~~~~~lDvHLm~~----~p~~~i~~~~~~Ga 89 (228)
T PTZ00170 16 ADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSF--GPPVVKSLRKHLPNTFLDCHLMVS----NPEKWVDDFAKAGA 89 (228)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcCc--CHHHHHHHHhcCCCCCEEEEECCC----CHHHHHHHHHHcCC
Confidence 345677888899999999988775443211122111 135677777765443 5555531 11557788999999
Q ss_pred CeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceee
Q psy2895 166 DVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTK 208 (293)
Q Consensus 166 ~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~ 208 (293)
|.+++-.|+.+. ...++++.+++. |..+.
T Consensus 90 d~itvH~ea~~~------------~~~~~l~~ik~~--G~~~g 118 (228)
T PTZ00170 90 SQFTFHIEATED------------DPKAVARKIREA--GMKVG 118 (228)
T ss_pred CEEEEeccCCch------------HHHHHHHHHHHC--CCeEE
Confidence 999987765211 133556666666 76443
No 237
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=91.58 E-value=8.5 Score=33.39 Aligned_cols=141 Identities=8% Similarity=0.058 Sum_probs=82.9
Q ss_pred HHHHHCCCcEEEEeeec------CCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcC-CCcC--cHHHHHHHHHHcCCCee
Q psy2895 98 YTINKLKLNYVVITSVN------RDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIP-DFRN--QINHVLKIFKQALPDVL 168 (293)
Q Consensus 98 ~~~~~~G~~~i~l~gg~------~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~-~~~~--~~~e~l~~l~~aG~~~i 168 (293)
+.+.+.|++-+.++|.. .||....+.+.+.+.++.|.+.. .+.+..=.+ |+.+ +..+.++++.++|+..+
T Consensus 23 ~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~-~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv 101 (243)
T cd00377 23 RLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAV-DLPVIADADTGYGNALNVARTVRELEEAGAAGI 101 (243)
T ss_pred HHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhc-cCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 34455688888776542 13332233455666666665532 122332122 3333 23556778888999888
Q ss_pred eeccccchHHHhhcC--CCCCHHHHHHHHHHHHHhCCCceeeEeEEee-----cC-CCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 169 NHNIETVPRLYKKVR--PGSDYKHSLNLLKNFKKLYPNILTKSGIMVG-----LG-ENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 169 ~~~less~~~~~~i~--~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG-----~g-Et~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
++-=+..++-.-... .-.+.++..+.++.++++..++ ...-++.+ .| +..++..+-.+...+.|.|.+.+.
T Consensus 102 ~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~-~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~ 180 (243)
T cd00377 102 HIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDL-PDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVE 180 (243)
T ss_pred EEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhcc-CCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 763221111111111 1238899999999998886564 33445555 44 678888888888899999988773
No 238
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=91.58 E-value=7.6 Score=38.28 Aligned_cols=79 Identities=11% Similarity=0.130 Sum_probs=56.1
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEc-C--CCcCcHHHHHHHHHHcC
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILI-P--DFRNQINHVLKIFKQAL 164 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~-~--~~~~~~~e~l~~l~~aG 164 (293)
.+++.+.+.++++.+.|+..|.|.--.. ......+.++++.+++..+ +.|.+.+ + |+.. .-.+..+ ++|
T Consensus 146 ~~~~~~~~~~~~~~~~Gad~I~i~Dt~G----~~~P~~v~~lv~~lk~~~~-~pi~~H~Hnt~Gla~--An~laAv-eaG 217 (582)
T TIGR01108 146 HTLETYLDLAEELLEMGVDSICIKDMAG----ILTPKAAYELVSALKKRFG-LPVHLHSHATTGMAE--MALLKAI-EAG 217 (582)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCC----CcCHHHHHHHHHHHHHhCC-CceEEEecCCCCcHH--HHHHHHH-HhC
Confidence 5789999999999999999988742221 1124678899999998764 4555544 2 4332 4466666 689
Q ss_pred CCeeeecccc
Q psy2895 165 PDVLNHNIET 174 (293)
Q Consensus 165 ~~~i~~~les 174 (293)
++.+...+.+
T Consensus 218 a~~vd~ai~G 227 (582)
T TIGR01108 218 ADGIDTAISS 227 (582)
T ss_pred CCEEEecccc
Confidence 9999987766
No 239
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=91.52 E-value=1.9 Score=37.00 Aligned_cols=80 Identities=11% Similarity=0.129 Sum_probs=50.7
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEc-C--CCcCcHHHHHHHHHHcC
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILI-P--DFRNQINHVLKIFKQAL 164 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~-~--~~~~~~~e~l~~l~~aG 164 (293)
.+++++.+.++.+.+.|+..|.|.--.. ...+..+.++++.+++..|+..+.+.. + |+.. ...+..+ ++|
T Consensus 134 ~~~~~~~~~~~~~~~~g~~~i~l~Dt~G----~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~--An~laA~-~aG 206 (237)
T PF00682_consen 134 TDPEELLELAEALAEAGADIIYLADTVG----IMTPEDVAELVRALREALPDIPLGFHAHNDLGLAV--ANALAAL-EAG 206 (237)
T ss_dssp SSHHHHHHHHHHHHHHT-SEEEEEETTS-----S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HH--HHHHHHH-HTT
T ss_pred ccHHHHHHHHHHHHHcCCeEEEeeCccC----CcCHHHHHHHHHHHHHhccCCeEEEEecCCccchh--HHHHHHH-HcC
Confidence 5678888888888888888877753221 112567888888888887766666644 2 3322 4456666 478
Q ss_pred CCeeeecccc
Q psy2895 165 PDVLNHNIET 174 (293)
Q Consensus 165 ~~~i~~~les 174 (293)
++++..++-+
T Consensus 207 a~~id~t~~G 216 (237)
T PF00682_consen 207 ADRIDGTLGG 216 (237)
T ss_dssp -SEEEEBGGG
T ss_pred CCEEEccCcc
Confidence 8888776654
No 240
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=91.48 E-value=9.8 Score=33.89 Aligned_cols=134 Identities=10% Similarity=0.084 Sum_probs=80.1
Q ss_pred CCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhC---CCcEEEEEcCCCcCcHHHHHHHHHH
Q psy2895 86 DPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLS---TKIKIEILIPDFRNQINHVLKIFKQ 162 (293)
Q Consensus 86 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~---~~~~i~~~~~~~~~~~~e~l~~l~~ 162 (293)
..++.++=+++++.+.+.|++.|-++ . |.+. +.-.+.++.|.+.. ++..+....+.. .+.++...+
T Consensus 18 ~~~s~~~Ki~ia~~L~~~Gv~~IE~g--f-P~~~----~~e~e~~~~i~~~~~~~~~~~~~al~r~~----~~die~a~~ 86 (284)
T cd07942 18 EPMSVEQKLRFFKLLVKIGFKEIEVG--F-PSAS----QTDFDFVRELIEEDLIPDDVTIQVLTQAR----EDLIERTFE 86 (284)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEe--C-CCCC----HHHHHHHHHHHHccCCCCCCEEEEEcCCC----hhhHHHHHH
Confidence 36899999999999999999988664 3 4343 22336677774442 234454444321 233445445
Q ss_pred c--CCC--eeeeccccchHHH-hhcCCC--CCHHHHHHHHHHHHHhCCCce-eeEeEEeec-C----CC-HHHHHHHHHH
Q psy2895 163 A--LPD--VLNHNIETVPRLY-KKVRPG--SDYKHSLNLLKNFKKLYPNIL-TKSGIMVGL-G----EN-DEEILTVIHD 228 (293)
Q Consensus 163 a--G~~--~i~~~less~~~~-~~i~~~--~~~e~~l~~i~~~~~~~pgi~-~~~~~ivG~-g----Et-~ed~~~~l~~ 228 (293)
+ |++ .+++.+-+|+... ++++++ ...+.+.+.++.++++ |+. +++.+.+-+ + .+ .+.+.+.++.
T Consensus 87 ~~~~~~~~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~--g~~~~~~~~~~~~~~EDasr~~~~~l~~~~~~ 164 (284)
T cd07942 87 ALRGAKKAIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKEL--AAKYPETDWRFEYSPESFSDTELDFALEVCEA 164 (284)
T ss_pred HhCCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHh--cccccCceEEEEECCccCCCCCHHHHHHHHHH
Confidence 4 665 5777665665443 345532 2455566677788888 764 233343433 4 34 5667777777
Q ss_pred HHhC
Q psy2895 229 MRNH 232 (293)
Q Consensus 229 l~~l 232 (293)
+.+.
T Consensus 165 ~~~~ 168 (284)
T cd07942 165 VIDV 168 (284)
T ss_pred HHHh
Confidence 7666
No 241
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=91.41 E-value=3.3 Score=35.71 Aligned_cols=131 Identities=9% Similarity=0.109 Sum_probs=78.4
Q ss_pred hhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcC-CCcCcHHHHHHHHHHcCCCee
Q psy2895 90 IEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIP-DFRNQINHVLKIFKQALPDVL 168 (293)
Q Consensus 90 ~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~-~~~~~~~e~l~~l~~aG~~~i 168 (293)
.+++.+.++.+.+.|+++++++.-+.... . ...-.++++.+++.. .+.+... |..+ .+.++.+.+.|++.+
T Consensus 26 ~~d~~~~a~~~~~~G~~~i~i~d~~~~~~-~--~~~~~~~i~~i~~~~---~~pv~~~GGI~s--~~d~~~~l~~G~~~v 97 (243)
T cd04731 26 AGDPVELAKRYNEQGADELVFLDITASSE-G--RETMLDVVERVAEEV---FIPLTVGGGIRS--LEDARRLLRAGADKV 97 (243)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEcCCcccc-c--CcccHHHHHHHHHhC---CCCEEEeCCCCC--HHHHHHHHHcCCceE
Confidence 44677788888889999998876553211 1 122347777787753 3444443 5555 666777777899988
Q ss_pred eeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEe------------ecCCCHHHHHHHHHHHHhCCCCE
Q psy2895 169 NHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMV------------GLGENDEEILTVIHDMRNHNIDI 236 (293)
Q Consensus 169 ~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~iv------------G~gEt~ed~~~~l~~l~~l~~~~ 236 (293)
.++-.. + .+++...+..+.+.+. .+.++.++-. |..++..+..+.++.+.+.|++.
T Consensus 98 ~ig~~~----~------~~p~~~~~i~~~~~~~--~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~ 165 (243)
T cd04731 98 SINSAA----V------ENPELIREIAKRFGSQ--CVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGE 165 (243)
T ss_pred EECchh----h------hChHHHHHHHHHcCCC--CEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCE
Confidence 776321 1 1333333433333222 3444554331 12345666777888889999998
Q ss_pred EEee
Q psy2895 237 LTIG 240 (293)
Q Consensus 237 i~i~ 240 (293)
+.++
T Consensus 166 i~v~ 169 (243)
T cd04731 166 ILLT 169 (243)
T ss_pred EEEe
Confidence 8886
No 242
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=91.41 E-value=5.5 Score=30.84 Aligned_cols=94 Identities=12% Similarity=0.110 Sum_probs=60.4
Q ss_pred hhHHHHHHHHHHhhCCCcEEEEE-cCCC-----------cCcHHHHHHHHHHcCCCeeee-ccccchHHHhhcCCCCCHH
Q psy2895 123 SSHFVSCIKHIRKLSTKIKIEIL-IPDF-----------RNQINHVLKIFKQALPDVLNH-NIETVPRLYKKVRPGSDYK 189 (293)
Q Consensus 123 ~~~~~~ll~~i~~~~~~~~i~~~-~~~~-----------~~~~~e~l~~l~~aG~~~i~~-~less~~~~~~i~~~~~~e 189 (293)
.+.+..+.+.+++.+|+..+... ++.. ..++.+.++.|.+.|++++.+ ++- +-+++.++
T Consensus 16 ~~~~~~i~~~l~~~~p~~~V~~afts~~i~~~l~~~~~~~p~~~eaL~~l~~~G~~~V~V~Pl~--------l~~G~e~~ 87 (127)
T cd03412 16 EKTIDAIEDKVRAAFPDYEVRWAFTSRMIRKKLKKRGIEVDTPEEALAKLAADGYTEVIVQSLH--------IIPGEEYE 87 (127)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEecHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCEEEEEeCe--------eECcHHHH
Confidence 45788888888888998777763 3211 233478888888888888764 321 22344566
Q ss_pred HHHHHHHHHHHhCCCceeeEeEEeec--CCCHHHHHHHHHHHH
Q psy2895 190 HSLNLLKNFKKLYPNILTKSGIMVGL--GENDEEILTVIHDMR 230 (293)
Q Consensus 190 ~~l~~i~~~~~~~pgi~~~~~~ivG~--gEt~ed~~~~l~~l~ 230 (293)
+..+.++.++ .|+. .+.+|- +.+.+|....+..+.
T Consensus 88 di~~~v~~~~--~~~~----~i~~g~pLl~~~~d~~~v~~al~ 124 (127)
T cd03412 88 KLKREVDAFK--KGFK----KIKLGRPLLYSPEDYEEVAAALK 124 (127)
T ss_pred HHHHHHHHHh--CCCc----eEEEccCCCCCHHHHHHHHHHHH
Confidence 6666666665 2333 344453 777888887777664
No 243
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=91.40 E-value=2.7 Score=32.89 Aligned_cols=73 Identities=14% Similarity=0.048 Sum_probs=50.3
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCC
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPD 166 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~ 166 (293)
..++|++.+.+ .+.++.-|.+++-... ..+.+.++++.+++..++ .+.++..|... .+..+.|+++|++
T Consensus 39 ~~s~e~~v~aa---~e~~adii~iSsl~~~-----~~~~~~~~~~~L~~~g~~-~i~vivGG~~~--~~~~~~l~~~Gvd 107 (132)
T TIGR00640 39 FQTPEEIARQA---VEADVHVVGVSSLAGG-----HLTLVPALRKELDKLGRP-DILVVVGGVIP--PQDFDELKEMGVA 107 (132)
T ss_pred CCCHHHHHHHH---HHcCCCEEEEcCchhh-----hHHHHHHHHHHHHhcCCC-CCEEEEeCCCC--hHhHHHHHHCCCC
Confidence 36788777655 4568888888765431 146788899999887543 45565555444 5567889999999
Q ss_pred eeee
Q psy2895 167 VLNH 170 (293)
Q Consensus 167 ~i~~ 170 (293)
.+-.
T Consensus 108 ~~~~ 111 (132)
T TIGR00640 108 EIFG 111 (132)
T ss_pred EEEC
Confidence 8764
No 244
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=91.39 E-value=7.9 Score=33.07 Aligned_cols=80 Identities=10% Similarity=0.169 Sum_probs=51.0
Q ss_pred ChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhC--CCcEEEEEcCCCcCcHHHHHHHHHHcCCC
Q psy2895 89 DIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLS--TKIKIEILIPDFRNQINHVLKIFKQALPD 166 (293)
Q Consensus 89 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~--~~~~i~~~~~~~~~~~~e~l~~l~~aG~~ 166 (293)
+.-.+.++++.+.+.|++.+++-=-+....|+..+ =.++++.+++.. -.+.+++++. +-...++.+.++|++
T Consensus 10 d~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~tf--g~~~i~~i~~~~~~~~~dvHLMv~----~p~~~i~~~~~~gad 83 (220)
T PRK08883 10 DFARLGEDVEKVLAAGADVVHFDVMDNHYVPNLTF--GAPICKALRDYGITAPIDVHLMVK----PVDRIIPDFAKAGAS 83 (220)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCcccCcccc--CHHHHHHHHHhCCCCCEEEEeccC----CHHHHHHHHHHhCCC
Confidence 45677888888888999988775433211122111 124556665531 1257777652 115688999999999
Q ss_pred eeeecccc
Q psy2895 167 VLNHNIET 174 (293)
Q Consensus 167 ~i~~~les 174 (293)
.+.+..|+
T Consensus 84 ~i~~H~Ea 91 (220)
T PRK08883 84 MITFHVEA 91 (220)
T ss_pred EEEEcccC
Confidence 99999886
No 245
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=91.37 E-value=6.2 Score=34.15 Aligned_cols=128 Identities=7% Similarity=0.130 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeeec
Q psy2895 92 EPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNHN 171 (293)
Q Consensus 92 ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~ 171 (293)
+..+.++.+.+.|++++++.--+.. . . ...-.++++.|.+.. .+.+.+- .|+.+ .|.++++-++|++++.++
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~-~-g--~~~n~~~i~~i~~~~-~~pv~vg-GGirs--~edv~~~l~~Ga~kvviG 104 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAA-F-G--RGSNRELLAEVVGKL-DVKVELS-GGIRD--DESLEAALATGCARVNIG 104 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEecccc-C-C--CCccHHHHHHHHHHc-CCCEEEc-CCCCC--HHHHHHHHHCCCCEEEEC
Confidence 6778888888999999988755421 1 1 122337788887653 2233332 25555 788888889999998877
Q ss_pred cccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeE------EeecCCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 172 IETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGI------MVGLGENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 172 less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~------ivG~gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
-... . +++-+.+.++.+.+. +.++.++ +-|..++..+..+.++.+.+.|++.+.++
T Consensus 105 s~~l-------~---~p~l~~~i~~~~~~~---i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~iiv~ 166 (241)
T PRK14024 105 TAAL-------E---NPEWCARVIAEHGDR---VAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRYVVT 166 (241)
T ss_pred chHh-------C---CHHHHHHHHHHhhhh---EEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCEEEEE
Confidence 4331 0 222233333333222 2222222 12443455667788888899999988776
No 246
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=91.25 E-value=2.2 Score=35.92 Aligned_cols=128 Identities=16% Similarity=0.253 Sum_probs=74.1
Q ss_pred ChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCC-CcEEEEEcCCCcCcHHHHHHHHHHcCCCe
Q psy2895 89 DIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLST-KIKIEILIPDFRNQINHVLKIFKQALPDV 167 (293)
Q Consensus 89 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~-~~~i~~~~~~~~~~~~e~l~~l~~aG~~~ 167 (293)
+.-.+.++++.+.+.|+..+++-=-+....|.. ..=.++++.+++... .+.+++++.. . ...++.++++|.+.
T Consensus 10 d~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~--~~g~~~i~~i~~~~~~~~DvHLMv~~--P--~~~i~~~~~~g~~~ 83 (201)
T PF00834_consen 10 DFLNLEEEIKRLEEAGADWLHIDIMDGHFVPNL--TFGPDIIKAIRKITDLPLDVHLMVEN--P--ERYIEEFAEAGADY 83 (201)
T ss_dssp -GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSSB---B-HHHHHHHHTTSSSEEEEEEESSS--G--GGHHHHHHHHT-SE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeecccccCCcc--cCCHHHHHHHhhcCCCcEEEEeeecc--H--HHHHHHHHhcCCCE
Confidence 456678888999999999888755543212221 112356677776521 2467776531 1 45789999999999
Q ss_pred eeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEeecCCCC
Q psy2895 168 LNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIGQYLMP 245 (293)
Q Consensus 168 i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~~~~p 245 (293)
+.+.+|+.+ +..+.++.+|++ |+.+ ++.+.-+...+.+... +. .+|.+-+. ...|
T Consensus 84 i~~H~E~~~-------------~~~~~i~~ik~~--g~k~--GialnP~T~~~~~~~~---l~--~vD~VlvM-sV~P 138 (201)
T PF00834_consen 84 ITFHAEATE-------------DPKETIKYIKEA--GIKA--GIALNPETPVEELEPY---LD--QVDMVLVM-SVEP 138 (201)
T ss_dssp EEEEGGGTT-------------THHHHHHHHHHT--TSEE--EEEE-TTS-GGGGTTT---GC--CSSEEEEE-SS-T
T ss_pred EEEcccchh-------------CHHHHHHHHHHh--CCCE--EEEEECCCCchHHHHH---hh--hcCEEEEE-EecC
Confidence 998887421 234567788888 8865 4443333333333222 22 57888776 4455
No 247
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=91.24 E-value=7.6 Score=32.18 Aligned_cols=113 Identities=15% Similarity=0.087 Sum_probs=74.5
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCe
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDV 167 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~ 167 (293)
.+++++.+.++.+.+.|++-+.++--++ .-.+.++.+++.+|+..+-.. ...+ .+.++...++|.+.
T Consensus 13 ~~~~~~~~~~~~l~~~G~~~vev~~~~~---------~~~~~i~~l~~~~~~~~iGag--~v~~--~~~~~~a~~~Ga~~ 79 (190)
T cd00452 13 DDAEDALALAEALIEGGIRAIEITLRTP---------GALEAIRALRKEFPEALIGAG--TVLT--PEQADAAIAAGAQF 79 (190)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCh---------hHHHHHHHHHHHCCCCEEEEE--eCCC--HHHHHHHHHcCCCE
Confidence 5689999999999999999887763322 234578888888765433332 2333 67788888899999
Q ss_pred eeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEeec
Q psy2895 168 LNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIGQ 241 (293)
Q Consensus 168 i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~ 241 (293)
++.+- +. .+.++.+++. |. .+|+|.. |.+|..+. .+.|.|.+.+++
T Consensus 80 i~~p~-~~----------------~~~~~~~~~~--~~----~~i~gv~-t~~e~~~A----~~~Gad~i~~~p 125 (190)
T cd00452 80 IVSPG-LD----------------PEVVKAANRA--GI----PLLPGVA-TPTEIMQA----LELGADIVKLFP 125 (190)
T ss_pred EEcCC-CC----------------HHHHHHHHHc--CC----cEECCcC-CHHHHHHH----HHCCCCEEEEcC
Confidence 87542 11 1345555555 54 3466654 66665444 458888888863
No 248
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=91.18 E-value=1.2 Score=39.24 Aligned_cols=46 Identities=7% Similarity=-0.016 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhCCCcEEEE-EcCCCc------------CcHHHHHHHHHHcCCCeeee
Q psy2895 125 HFVSCIKHIRKLSTKIKIEI-LIPDFR------------NQINHVLKIFKQALPDVLNH 170 (293)
Q Consensus 125 ~~~~ll~~i~~~~~~~~i~~-~~~~~~------------~~~~e~l~~l~~aG~~~i~~ 170 (293)
.+..+-+.+++.+|+..+.. +|+.++ ....+.|+.|++.|.+.+.+
T Consensus 19 ti~~ie~~~~~~fp~~~V~~AfTS~~I~~kl~~~~g~~i~~~~eaL~~L~~~G~~~V~V 77 (262)
T PF06180_consen 19 TIDAIEKAVREAFPDYDVRRAFTSRIIRKKLAERDGIKIDSPEEALAKLADEGYTEVVV 77 (262)
T ss_dssp HHHHHHHHHHHCSTTSEEEEEES-HHHHHHHHHCHT-----HHHHHHHHHHCT--EEEE
T ss_pred HHHHHHHHHHHHCCCCcEEEEchHHHHHHHHHhcCCCCcCCHHHHHHHHHHCCCCEEEE
Confidence 67777888999999988876 454221 22368999999999998764
No 249
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=91.15 E-value=8.2 Score=33.82 Aligned_cols=79 Identities=10% Similarity=0.038 Sum_probs=37.5
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEc-C--CCcCcHHHHHHHHHHcC
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILI-P--DFRNQINHVLKIFKQAL 164 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~-~--~~~~~~~e~l~~l~~aG 164 (293)
.+++.+.+.++.+.+.|+..|.|.-- .-...+..+.++++.+++..+.+.+.+.. + |+.. .-.+..+ ++|
T Consensus 138 ~~~~~~~~~~~~~~~~G~d~i~l~DT----~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~--AN~laAi-~aG 210 (263)
T cd07943 138 ASPEELAEQAKLMESYGADCVYVTDS----AGAMLPDDVRERVRALREALDPTPVGFHGHNNLGLAV--ANSLAAV-EAG 210 (263)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCC----CCCcCHHHHHHHHHHHHHhCCCceEEEEecCCcchHH--HHHHHHH-HhC
Confidence 45666666666666666666555211 11112355666666666554332333322 1 2211 2334444 356
Q ss_pred CCeeeeccc
Q psy2895 165 PDVLNHNIE 173 (293)
Q Consensus 165 ~~~i~~~le 173 (293)
++.+..++.
T Consensus 211 a~~vd~s~~ 219 (263)
T cd07943 211 ATRIDGSLA 219 (263)
T ss_pred CCEEEeecc
Confidence 666655443
No 250
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=91.04 E-value=5 Score=31.75 Aligned_cols=74 Identities=11% Similarity=0.074 Sum_probs=50.3
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCC
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPD 166 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~ 166 (293)
..+++|+.+.+ .+..+.-|.+++-... ....+.++++.+++.+.+ .|.+...+.+. .+.+..|++.|++
T Consensus 49 ~~tp~e~v~aA---~~~dv~vIgvSsl~g~-----h~~l~~~lve~lre~G~~-~i~v~~GGvip--~~d~~~l~~~G~~ 117 (143)
T COG2185 49 FQTPEEAVRAA---VEEDVDVIGVSSLDGG-----HLTLVPGLVEALREAGVE-DILVVVGGVIP--PGDYQELKEMGVD 117 (143)
T ss_pred cCCHHHHHHHH---HhcCCCEEEEEeccch-----HHHHHHHHHHHHHHhCCc-ceEEeecCccC--chhHHHHHHhCcc
Confidence 35677777655 5556776666654421 146788899999988654 45555555565 6678999999999
Q ss_pred eeeec
Q psy2895 167 VLNHN 171 (293)
Q Consensus 167 ~i~~~ 171 (293)
++..+
T Consensus 118 ~if~p 122 (143)
T COG2185 118 RIFGP 122 (143)
T ss_pred eeeCC
Confidence 98754
No 251
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=91.03 E-value=5.6 Score=35.39 Aligned_cols=112 Identities=15% Similarity=0.114 Sum_probs=62.7
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCC------CCChhHHHHHHHHHHhhCCC-cEEEEE-cCC---CcCcHHHH
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLH------DGGSSHFVSCIKHIRKLSTK-IKIEIL-IPD---FRNQINHV 156 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~------~~~~~~~~~ll~~i~~~~~~-~~i~~~-~~~---~~~~~~e~ 156 (293)
++.+++.+.+..+.+.|++.|.+..|+++... ..+..+..+|++.+++...+ +.+.+. .|. ...+.+..
T Consensus 82 ~n~~~l~~~L~~~~~~Gi~niL~l~GD~~~~g~~~~~~~~~~~~~~~Li~~i~~~~~~~~~i~va~~P~~hp~~~~~~~~ 161 (287)
T PF02219_consen 82 RNREALQSDLLGAHALGIRNILALTGDPPKGGDHFAKPVFDFDYALDLIRLIRQEYGDDFSIGVAGYPEGHPEAPDFEAE 161 (287)
T ss_dssp SBHHHHHHHHHHHHHTT--EEEEESS-TSTTSSS----TTS-SSHHHHHHHHHHHHGGGSEEEEEE-TTHHTTCSSHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCCCCCCccccCCCchhHHHHHHHHHHHHhcCcccccccccCCCCCccccCHHHH
Confidence 56788999999999999999988888864221 11234577888888854322 455553 241 11122333
Q ss_pred HHHH---HHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec
Q psy2895 157 LKIF---KQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL 215 (293)
Q Consensus 157 l~~l---~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~ 215 (293)
+++| .+||.+.+- . | .-++.+.+.+.++.+++. |+ ..-+++|+
T Consensus 162 ~~~l~~Ki~aGA~f~i-T-Q----------~~fd~~~~~~~~~~~~~~--g~--~~pIi~GI 207 (287)
T PF02219_consen 162 LKRLKKKIDAGADFII-T-Q----------PFFDAEAFERFLDRLREA--GI--DVPIIPGI 207 (287)
T ss_dssp HHHHHHHHHTTESEEE-E-E----------E-SSHHHHHHHHHHHHHT--TH--TSEEEEEE
T ss_pred HHHHHHHHHCCCCEEe-c-c----------ccCCHHHHHHHHHHHHHc--CC--CCcEEEEE
Confidence 3333 347877542 1 1 123566677777788888 77 22334454
No 252
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=90.98 E-value=6.3 Score=33.65 Aligned_cols=129 Identities=10% Similarity=0.094 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcC-CCcCcHHHHHHHHHHcCCCeee
Q psy2895 91 EEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIP-DFRNQINHVLKIFKQALPDVLN 169 (293)
Q Consensus 91 eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~-~~~~~~~e~l~~l~~aG~~~i~ 169 (293)
.+..+.++.+.+.|++.++++.-+.. +.. ...-.++++.+.+.. .+.+... +..+ .+.++++.++|++.+.
T Consensus 30 ~~~~~~a~~~~~~g~~~i~v~dld~~-~~g--~~~~~~~i~~i~~~~---~~pv~~~GGI~~--~ed~~~~~~~Ga~~vi 101 (233)
T PRK00748 30 DDPVAQAKAWEDQGAKWLHLVDLDGA-KAG--KPVNLELIEAIVKAV---DIPVQVGGGIRS--LETVEALLDAGVSRVI 101 (233)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCcc-ccC--CcccHHHHHHHHHHC---CCCEEEcCCcCC--HHHHHHHHHcCCCEEE
Confidence 46777778888899999998875431 111 123346667676643 2334333 4444 6778888889999987
Q ss_pred eccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeE------Eeec-CCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 170 HNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGI------MVGL-GENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 170 ~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~------ivG~-gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
++-.. ++ +.+...+..+...+ .+.++.++ +-|. ..+..+..+..+.+.+.|++.+.++
T Consensus 102 lg~~~----l~------~~~~l~ei~~~~~~---~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~ 166 (233)
T PRK00748 102 IGTAA----VK------NPELVKEACKKFPG---KIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIYT 166 (233)
T ss_pred ECchH----Hh------CHHHHHHHHHHhCC---CceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEEe
Confidence 76432 11 12222233333211 23333332 1232 3345566777888889999976664
No 253
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=90.89 E-value=1.8 Score=33.17 Aligned_cols=74 Identities=14% Similarity=0.100 Sum_probs=49.8
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCC
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPD 166 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~ 166 (293)
..+++++.+.+. +.+...|.+++-... . .+.+.++++.+++..++ .+.+...|-.. .+..++++++|++
T Consensus 36 ~vp~e~~~~~a~---~~~~d~V~iS~~~~~-~----~~~~~~~~~~L~~~~~~-~i~i~~GG~~~--~~~~~~~~~~G~d 104 (122)
T cd02071 36 RQTPEEIVEAAI---QEDVDVIGLSSLSGG-H----MTLFPEVIELLRELGAG-DILVVGGGIIP--PEDYELLKEMGVA 104 (122)
T ss_pred CCCHHHHHHHHH---HcCCCEEEEcccchh-h----HHHHHHHHHHHHhcCCC-CCEEEEECCCC--HHHHHHHHHCCCC
Confidence 367787776654 557888888766531 1 46788889999887553 45554443333 5668889999999
Q ss_pred eeeec
Q psy2895 167 VLNHN 171 (293)
Q Consensus 167 ~i~~~ 171 (293)
.+-.+
T Consensus 105 ~~~~~ 109 (122)
T cd02071 105 EIFGP 109 (122)
T ss_pred EEECC
Confidence 87654
No 254
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=90.80 E-value=11 Score=33.31 Aligned_cols=144 Identities=15% Similarity=0.149 Sum_probs=82.7
Q ss_pred ChhHHHHHHHHHHHCCCcEEEEeeecCCCCC----CCChhHHHHHHHHHHhhC-CCcEEEEEcCCCc-CcHHHHHHHHHH
Q psy2895 89 DIEEPKKIAYTINKLKLNYVVITSVNRDDLH----DGGSSHFVSCIKHIRKLS-TKIKIEILIPDFR-NQINHVLKIFKQ 162 (293)
Q Consensus 89 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~----~~~~~~~~~ll~~i~~~~-~~~~i~~~~~~~~-~~~~e~l~~l~~ 162 (293)
+++++.+.++.+.+.|+..|-|..+.+.... ..+.+.+.++++.+++.. ..+.+++. ++.. ++..+.++.+.+
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~-~~~~~~~~~~~a~~l~~ 187 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLS-PYFDLEDIVELAKAAER 187 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeC-CCCCHHHHHHHHHHHHH
Confidence 6789999999998889998888766542110 123467888999998753 11334443 2221 123567888889
Q ss_pred cCCCeeeecc--cc-chHH------HhhcCCCCC----HHHHHHHHHHHHHhCC-CceeeEeEEeecCCCHHHHHHHHHH
Q psy2895 163 ALPDVLNHNI--ET-VPRL------YKKVRPGSD----YKHSLNLLKNFKKLYP-NILTKSGIMVGLGENDEEILTVIHD 228 (293)
Q Consensus 163 aG~~~i~~~l--es-s~~~------~~~i~~~~~----~e~~l~~i~~~~~~~p-gi~~~~~~ivG~gEt~ed~~~~l~~ 228 (293)
+|+|.+.+.- -. .... ......+.+ ..-.++.++.+++..| ++++ +..|=-.|.+|+.+.+.
T Consensus 188 ~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipi---ia~GGI~~~~da~~~l~- 263 (289)
T cd02810 188 AGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPI---IGVGGIDSGEDVLEMLM- 263 (289)
T ss_pred cCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCE---EEECCCCCHHHHHHHHH-
Confidence 9999987631 11 1000 000111111 1123666777777654 4432 22332467788777764
Q ss_pred HHhCCCCEEEee
Q psy2895 229 MRNHNIDILTIG 240 (293)
Q Consensus 229 l~~l~~~~i~i~ 240 (293)
.|.+.+.+.
T Consensus 264 ---~GAd~V~vg 272 (289)
T cd02810 264 ---AGASAVQVA 272 (289)
T ss_pred ---cCccHheEc
Confidence 588877764
No 255
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=90.76 E-value=12 Score=33.73 Aligned_cols=139 Identities=13% Similarity=-0.002 Sum_probs=84.9
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCC----------CCCCCChhHHHHHHHHHHhhCC-CcEEEEE-cCCCc--CcH
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRD----------DLHDGGSSHFVSCIKHIRKLST-KIKIEIL-IPDFR--NQI 153 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~----------~l~~~~~~~~~~ll~~i~~~~~-~~~i~~~-~~~~~--~~~ 153 (293)
-+++++.+.++.+.+.|+..|-|..|.|. .+ ..+.+.+.++++.+++..+ ++.|++= ..++. +..
T Consensus 72 ~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~L-l~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~ 150 (312)
T PRK10550 72 QYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATL-LKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERK 150 (312)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHh-hcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHH
Confidence 46888998888888899999888877641 11 1245778899999988753 3344441 12322 112
Q ss_pred HHHHHHHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCC
Q psy2895 154 NHVLKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHN 233 (293)
Q Consensus 154 ~e~l~~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~ 233 (293)
.+.++.+.++|++.+++..-+...-| . +. .-+| +.++.+++.. ++++ +..|=-.|.+|..+.+ ..-+
T Consensus 151 ~~~a~~l~~~Gvd~i~Vh~Rt~~~~y---~-g~-~~~~-~~i~~ik~~~-~iPV---i~nGdI~t~~da~~~l---~~~g 217 (312)
T PRK10550 151 FEIADAVQQAGATELVVHGRTKEDGY---R-AE-HINW-QAIGEIRQRL-TIPV---IANGEIWDWQSAQQCM---AITG 217 (312)
T ss_pred HHHHHHHHhcCCCEEEECCCCCccCC---C-CC-cccH-HHHHHHHhhc-CCcE---EEeCCcCCHHHHHHHH---hccC
Confidence 57778888999999987643321111 1 11 1122 5666666652 4433 2233346777777666 4468
Q ss_pred CCEEEee
Q psy2895 234 IDILTIG 240 (293)
Q Consensus 234 ~~~i~i~ 240 (293)
.|.+.+.
T Consensus 218 ~DgVmiG 224 (312)
T PRK10550 218 CDAVMIG 224 (312)
T ss_pred CCEEEEc
Confidence 8888775
No 256
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=90.74 E-value=6.1 Score=36.79 Aligned_cols=116 Identities=9% Similarity=0.038 Sum_probs=72.2
Q ss_pred ChhHHHHHHHHHHhhCCCcEEEEEcCC-C-cCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcC--CCCCHHHHHHHHH
Q psy2895 122 GSSHFVSCIKHIRKLSTKIKIEILIPD-F-RNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVR--PGSDYKHSLNLLK 196 (293)
Q Consensus 122 ~~~~~~~ll~~i~~~~~~~~i~~~~~~-~-~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~--~~~~~e~~l~~i~ 196 (293)
+.+.+.+.++.+++..|+..+-++..+ . .++..+.++.+.++|+|.+.+++-. .-...+.+. -+++++...+.++
T Consensus 96 g~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~ 175 (385)
T PLN02495 96 PFETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCG 175 (385)
T ss_pred CHHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHH
Confidence 466777777777766655444333311 1 1222467777888899998888744 211112222 1346777777777
Q ss_pred HHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEeecC
Q psy2895 197 NFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIGQY 242 (293)
Q Consensus 197 ~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~~ 242 (293)
++++. +..-+++-+.-+..++.+..+.+.+-|.+-+.+.+-
T Consensus 176 ~Vk~~-----~~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT 216 (385)
T PLN02495 176 WINAK-----ATVPVWAKMTPNITDITQPARVALKSGCEGVAAINT 216 (385)
T ss_pred HHHHh-----hcCceEEEeCCChhhHHHHHHHHHHhCCCEEEEecc
Confidence 77765 234567777666677999999999999998766433
No 257
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=90.70 E-value=8.9 Score=33.53 Aligned_cols=137 Identities=12% Similarity=0.117 Sum_probs=77.0
Q ss_pred CCCChhHHHHHHHHHHHCCCcEEEEeeecC-CCC----CCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHH
Q psy2895 86 DPLDIEEPKKIAYTINKLKLNYVVITSVNR-DDL----HDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIF 160 (293)
Q Consensus 86 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~-~~l----~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l 160 (293)
...+.+++.+.++++.+.|+.-|-+.++.. |.. ...+.+++..+++.+++.. +..+.+-| .. .+.++.-
T Consensus 19 ~~~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~-~~piSIDT---~~--~~v~~aa 92 (258)
T cd00423 19 KFLSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEP-DVPISVDT---FN--AEVAEAA 92 (258)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcC-CCeEEEeC---Cc--HHHHHHH
Confidence 347899999999999999999888776543 211 0112356777888887643 33454422 22 4555554
Q ss_pred HHcCCCeee-ecccc-chHHHhhc----------C-CC------------CC----HHHHHHHHHHHHHhCCCc---eee
Q psy2895 161 KQALPDVLN-HNIET-VPRLYKKV----------R-PG------------SD----YKHSLNLLKNFKKLYPNI---LTK 208 (293)
Q Consensus 161 ~~aG~~~i~-~~les-s~~~~~~i----------~-~~------------~~----~e~~l~~i~~~~~~~pgi---~~~ 208 (293)
-++|.+.++ ++.+. .+++.+.+ + ++ .. .+...+.++.+.++ |+ .+-
T Consensus 93 L~~g~~iINdis~~~~~~~~~~l~~~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--Gi~~~~Ii 170 (258)
T cd00423 93 LKAGADIINDVSGGRGDPEMAPLAAEYGAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAATEA--GIPPEDII 170 (258)
T ss_pred HHhCCCEEEeCCCCCCChHHHHHHHHcCCCEEEECcCCCCcccccCCCcchHHHHHHHHHHHHHHHHHHc--CCCHHHEE
Confidence 455655543 23322 13332211 1 11 01 34455566668888 86 356
Q ss_pred EeEEeecCCCHHHHHHHHHHHH
Q psy2895 209 SGIMVGLGENDEEILTVIHDMR 230 (293)
Q Consensus 209 ~~~ivG~gEt~ed~~~~l~~l~ 230 (293)
.|-.+|++-+.++-.++++.+.
T Consensus 171 lDPg~g~~k~~~~~~~~l~~i~ 192 (258)
T cd00423 171 LDPGIGFGKTEEHNLELLRRLD 192 (258)
T ss_pred EeCCCCccCCHHHHHHHHHHHH
Confidence 7777788435555444544443
No 258
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=90.68 E-value=3.2 Score=36.87 Aligned_cols=80 Identities=10% Similarity=0.055 Sum_probs=45.2
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEc-C--CCcCcHHHHHHHHHHcC
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILI-P--DFRNQINHVLKIFKQAL 164 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~-~--~~~~~~~e~l~~l~~aG 164 (293)
.+++.+.+.++.+.+.|++.|.+.--.. ...+..+.++++.+++..|+..+.+.. + |+.. ...+..+ ++|
T Consensus 144 ~~~~~~~~~~~~~~~~G~~~i~l~DT~G----~~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~Gla~--AN~laA~-~aG 216 (280)
T cd07945 144 DSPDYVFQLVDFLSDLPIKRIMLPDTLG----ILSPFETYTYISDMVKRYPNLHFDFHAHNDYDLAV--ANVLAAV-KAG 216 (280)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCCC----CCCHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHH--HHHHHHH-HhC
Confidence 3567777777777777777766632111 112456777777777666555555533 2 2221 3445555 467
Q ss_pred CCeeeecccc
Q psy2895 165 PDVLNHNIET 174 (293)
Q Consensus 165 ~~~i~~~les 174 (293)
++.+..++.+
T Consensus 217 a~~vd~s~~G 226 (280)
T cd07945 217 IKGLHTTVNG 226 (280)
T ss_pred CCEEEEeccc
Confidence 7777655544
No 259
>PRK15452 putative protease; Provisional
Probab=90.64 E-value=13 Score=35.41 Aligned_cols=74 Identities=14% Similarity=0.023 Sum_probs=44.7
Q ss_pred HHHHHHHHCCCcEEEEeeecCCCCC----CCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCc-----HHHHHHHHHHcCC
Q psy2895 95 KIAYTINKLKLNYVVITSVNRDDLH----DGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQ-----INHVLKIFKQALP 165 (293)
Q Consensus 95 ~~~~~~~~~G~~~i~l~gg~~~~l~----~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~-----~~e~l~~l~~aG~ 165 (293)
+.++.+.+.|++.|++.+... .+. ..+.+.+.+.++.+++. +..+.+.+|.+..+ +.+.++.+.++|+
T Consensus 14 e~l~aAi~~GADaVY~G~~~~-~~R~~~~~f~~edl~eav~~ah~~--g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gv 90 (443)
T PRK15452 14 KNMRYAFAYGADAVYAGQPRY-SLRVRNNEFNHENLALGINEAHAL--GKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKP 90 (443)
T ss_pred HHHHHHHHCCCCEEEECCCcc-chhhhccCCCHHHHHHHHHHHHHc--CCEEEEEecCcCCHHHHHHHHHHHHHHHhCCC
Confidence 344566678999998854421 110 12346788888888776 34555544432221 2445777888899
Q ss_pred Ceeeec
Q psy2895 166 DVLNHN 171 (293)
Q Consensus 166 ~~i~~~ 171 (293)
|.+-++
T Consensus 91 DgvIV~ 96 (443)
T PRK15452 91 DALIMS 96 (443)
T ss_pred CEEEEc
Confidence 988764
No 260
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=90.53 E-value=4.4 Score=35.89 Aligned_cols=80 Identities=8% Similarity=0.049 Sum_probs=56.1
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEc-C--CCcCcHHHHHHHHHHcC
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILI-P--DFRNQINHVLKIFKQAL 164 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~-~--~~~~~~~e~l~~l~~aG 164 (293)
.+++.+.+.++.+.+.|+..|.+.--.. ...+..+.++++.+++..|++.+.+.. + |+.. ...+..+ ++|
T Consensus 146 ~~~~~~~~~~~~~~~~Ga~~i~l~DT~G----~~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~--AN~laA~-~aG 218 (274)
T cd07938 146 VPPERVAEVAERLLDLGCDEISLGDTIG----VATPAQVRRLLEAVLERFPDEKLALHFHDTRGQAL--ANILAAL-EAG 218 (274)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCC----ccCHHHHHHHHHHHHHHCCCCeEEEEECCCCChHH--HHHHHHH-HhC
Confidence 4789999999999999999888742221 122568889999999887766666644 2 3322 4456666 589
Q ss_pred CCeeeecccc
Q psy2895 165 PDVLNHNIET 174 (293)
Q Consensus 165 ~~~i~~~les 174 (293)
++.+..++-+
T Consensus 219 a~~id~t~~G 228 (274)
T cd07938 219 VRRFDSSVGG 228 (274)
T ss_pred CCEEEEeccc
Confidence 9998876553
No 261
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=90.51 E-value=5 Score=35.15 Aligned_cols=139 Identities=12% Similarity=0.098 Sum_probs=76.5
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCC---------------CChhHHHHHHHHHHhhCCCcEEEEE--c-C--
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHD---------------GGSSHFVSCIKHIRKLSTKIKIEIL--I-P-- 147 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~---------------~~~~~~~~ll~~i~~~~~~~~i~~~--~-~-- 147 (293)
-+.+.-.+.++.+.+.|+.-|-|.--..+++.+ .+.+.+.++++.+++..+++.+-++ . |
T Consensus 21 P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~ 100 (256)
T TIGR00262 21 PTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIF 100 (256)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHh
Confidence 367777888888888899877664322111111 1235677888888765333332232 2 2
Q ss_pred CCcCcHHHHHHHHHHcCCCeeeecccc---chHHHhhcCC----------CCCHHHHHHHHHHHHHhCCCceeeEeEEee
Q psy2895 148 DFRNQINHVLKIFKQALPDVLNHNIET---VPRLYKKVRP----------GSDYKHSLNLLKNFKKLYPNILTKSGIMVG 214 (293)
Q Consensus 148 ~~~~~~~e~l~~l~~aG~~~i~~~les---s~~~~~~i~~----------~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG 214 (293)
.+. .++.++.++++|++.+-+.-+. ..++.+.++. ..+..++++ .+.+.-+|+-...+.. |
T Consensus 101 ~~G--~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~---~i~~~~~gfiy~vs~~-G 174 (256)
T TIGR00262 101 RKG--VEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLK---QIAEKSQGFVYLVSRA-G 174 (256)
T ss_pred hhh--HHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHH---HHHHhCCCCEEEEECC-C
Confidence 111 1567899999999998765433 2344443321 223333333 3323333664333333 7
Q ss_pred c-CCC---HHHHHHHHHHHHhC
Q psy2895 215 L-GEN---DEEILTVIHDMRNH 232 (293)
Q Consensus 215 ~-gEt---~ed~~~~l~~l~~l 232 (293)
. |+. ..++.+.++.+++.
T Consensus 175 ~TG~~~~~~~~~~~~i~~lr~~ 196 (256)
T TIGR00262 175 VTGARNRAASALNELVKRLKAY 196 (256)
T ss_pred CCCCcccCChhHHHHHHHHHhh
Confidence 7 663 45677777777765
No 262
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=90.50 E-value=3 Score=37.30 Aligned_cols=113 Identities=16% Similarity=0.128 Sum_probs=70.0
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCC--CCCCCChhHHHHHHHHHHhhCCC-cEEEEE-cCCCcC---cHHHHHHH
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRD--DLHDGGSSHFVSCIKHIRKLSTK-IKIEIL-IPDFRN---QINHVLKI 159 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~--~l~~~~~~~~~~ll~~i~~~~~~-~~i~~~-~~~~~~---~~~e~l~~ 159 (293)
..+..++.+.++.+.+.|++.|+...|+++ +.+.....+-.++++.+++...+ +.|.+. .|.... +..+.+.+
T Consensus 88 d~n~~~i~~~l~~~~~~Gi~~ilaLrGDpp~g~~~~~~~~~s~dLv~lik~~~~~~f~i~~A~~Pe~h~~s~~~~~d~~~ 167 (291)
T COG0685 88 DRNRIEIISILKGAAALGIRNILALRGDPPAGDKPGGKDLYSVDLVELIKKMRGGIFDIGVAAYPEGHPESKDVKEDIKR 167 (291)
T ss_pred CCCHHHHHHHHHHHHHhCCceEEEecCCCCCCCCCCccccCHHHHHHHHHHhcCCeEEEEEEeCCCCCccchhhHHHHHH
Confidence 357899999999999999999999999975 22221134677889988876545 556553 353221 11223334
Q ss_pred HH---HcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec
Q psy2895 160 FK---QALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL 215 (293)
Q Consensus 160 l~---~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~ 215 (293)
|+ ++|.+.+- +.- -++.+.+.+-.+.++++ |+ ..-++.|+
T Consensus 168 lkrKv~aGAd~~i-----TQ~-------~fd~e~~~~~~~~~~~~--g~--~~pI~~Gi 210 (291)
T COG0685 168 LKRKVDAGADFFI-----TQF-------FFDVEAFERFAERVRAA--GI--DIPIIPGI 210 (291)
T ss_pred HHHHHhcchHHHH-----HHH-------ccCHHHHHHHHHHHHhc--CC--CCCeeecc
Confidence 43 35554421 011 23667777777788887 76 44556665
No 263
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=90.48 E-value=4.8 Score=34.92 Aligned_cols=82 Identities=21% Similarity=0.190 Sum_probs=51.1
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCC---------------hhHHHHHHHHHHhhCCCcEEEEEc--CCCc
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGG---------------SSHFVSCIKHIRKLSTKIKIEILI--PDFR 150 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~---------------~~~~~~ll~~i~~~~~~~~i~~~~--~~~~ 150 (293)
-+.+...+.++.+.+.|+..+.+.--..+..-+.. .+...++++.+++.. ++.+.+++ +-+.
T Consensus 11 P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~-~~pv~lm~y~n~~~ 89 (242)
T cd04724 11 PDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN-TIPIVLMGYYNPIL 89 (242)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC-CCCEEEEEecCHHH
Confidence 35688899999999999998887521111111110 125667888887643 34455533 2111
Q ss_pred C-cHHHHHHHHHHcCCCeeee
Q psy2895 151 N-QINHVLKIFKQALPDVLNH 170 (293)
Q Consensus 151 ~-~~~e~l~~l~~aG~~~i~~ 170 (293)
. -++..++.++++|++.+.+
T Consensus 90 ~~G~~~fi~~~~~aG~~giii 110 (242)
T cd04724 90 QYGLERFLRDAKEAGVDGLII 110 (242)
T ss_pred HhCHHHHHHHHHHCCCcEEEE
Confidence 1 1266899999999999887
No 264
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=90.46 E-value=11 Score=32.56 Aligned_cols=131 Identities=15% Similarity=0.224 Sum_probs=82.4
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCC----------CCCCCChhHHHHHHHHHHhhCCCcEEEE-EcCCCc-CcHH
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRD----------DLHDGGSSHFVSCIKHIRKLSTKIKIEI-LIPDFR-NQIN 154 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~----------~l~~~~~~~~~~ll~~i~~~~~~~~i~~-~~~~~~-~~~~ 154 (293)
..++++..+.++.+.+ ++..|-|.-|-|- .+ -.+.+.+.++++.+++. +..|.+ ..++.. .+..
T Consensus 76 ~~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~L-l~dp~~l~~iv~av~~~--~~PVsvKiR~~~~~~~~~ 151 (231)
T TIGR00736 76 FVDLEEAYDVLLTIAE-HADIIEINAHCRQPEITEIGIGQEL-LKNKELLKEFLTKMKEL--NKPIFVKIRGNCIPLDEL 151 (231)
T ss_pred cCCHHHHHHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhh-cCCHHHHHHHHHHHHcC--CCcEEEEeCCCCCcchHH
Confidence 3578999988888765 6777766544321 12 23467899999999864 233444 233222 1225
Q ss_pred HHHHHHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec--CCCHHHHHHHHHHHHhC
Q psy2895 155 HVLKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL--GENDEEILTVIHDMRNH 232 (293)
Q Consensus 155 e~l~~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~--gEt~ed~~~~l~~l~~l 232 (293)
+..+.+.++|++.+++. .+.++..+. -++.++.+++..++++ |+|- -.|.+|..+.++ .
T Consensus 152 ~~a~~l~~aGad~i~Vd---------~~~~g~~~a-~~~~I~~i~~~~~~ip-----IIgNGgI~s~eda~e~l~----~ 212 (231)
T TIGR00736 152 IDALNLVDDGFDGIHVD---------AMYPGKPYA-DMDLLKILSEEFNDKI-----IIGNNSIDDIESAKEMLK----A 212 (231)
T ss_pred HHHHHHHHcCCCEEEEe---------eCCCCCchh-hHHHHHHHHHhcCCCc-----EEEECCcCCHHHHHHHHH----h
Confidence 78888999999999873 122332222 3577888888743343 4555 467788777764 4
Q ss_pred CCCEEEee
Q psy2895 233 NIDILTIG 240 (293)
Q Consensus 233 ~~~~i~i~ 240 (293)
|.+.+.+.
T Consensus 213 GAd~Vmvg 220 (231)
T TIGR00736 213 GADFVSVA 220 (231)
T ss_pred CCCeEEEc
Confidence 88888774
No 265
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=90.40 E-value=12 Score=33.06 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=12.3
Q ss_pred CChhHHHHHHHHHHHCCCcEEEE
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVI 110 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l 110 (293)
.+++.+.+.++++.+.|+..|.+
T Consensus 146 ~~~~~~~~~~~~~~~~Ga~~i~l 168 (275)
T cd07937 146 HTLEYYVKLAKELEDMGADSICI 168 (275)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE
Confidence 34555555555555555555544
No 266
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=90.36 E-value=8.6 Score=33.34 Aligned_cols=78 Identities=10% Similarity=0.131 Sum_probs=36.8
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEc-C--CCcCcHHHHHHHHHHcC
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILI-P--DFRNQINHVLKIFKQAL 164 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~-~--~~~~~~~e~l~~l~~aG 164 (293)
.+++++.+.++.+.+.|++.|.+.--.. ...++.+.++++.+++..+++.+.+.. + |+.. .-.+..+ ++|
T Consensus 143 ~~~~~l~~~~~~~~~~g~~~i~l~Dt~G----~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~--an~laA~-~aG 215 (265)
T cd03174 143 TDPEYVLEVAKALEEAGADEISLKDTVG----LATPEEVAELVKALREALPDVPLGLHTHNTLGLAV--ANSLAAL-EAG 215 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEechhcC----CcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHH--HHHHHHH-HcC
Confidence 4556666666666666666555521111 011345556666666555434444332 1 2221 3344444 356
Q ss_pred CCeeeecc
Q psy2895 165 PDVLNHNI 172 (293)
Q Consensus 165 ~~~i~~~l 172 (293)
++++..++
T Consensus 216 ~~~id~s~ 223 (265)
T cd03174 216 ADRVDGSV 223 (265)
T ss_pred CCEEEecc
Confidence 66655444
No 267
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=90.29 E-value=7.6 Score=34.82 Aligned_cols=112 Identities=13% Similarity=0.038 Sum_probs=62.7
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEE-EcC-CC--cCcHHHHHHHHH-
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEI-LIP-DF--RNQINHVLKIFK- 161 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~-~~~-~~--~~~~~e~l~~l~- 161 (293)
..+.+++.+.+..+.+.|++.|...+|++|...+....+-.++++.|++.. ...+.+ ..| +. ..+.+..++.|+
T Consensus 93 ~~n~~~l~~~L~~~~~~GI~niLaLrGD~p~~~~~~~~~a~dLv~li~~~~-~~~i~va~yPeghp~~~~~~~dl~~Lk~ 171 (296)
T PRK09432 93 DATPDELRTIAKDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKSVA-DFDISVAAYPEVHPEAKSAQADLINLKR 171 (296)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCcCHHHHHHHHHHhC-CCccceeeCCCCCCCCCCHHHHHHHHHH
Confidence 357889999999999999999999999865332222234457777777642 233333 223 11 111122333443
Q ss_pred --HcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec
Q psy2895 162 --QALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL 215 (293)
Q Consensus 162 --~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~ 215 (293)
++|.+.+- . +- -++.+.+.+-++.+++. |+ +.-+++|+
T Consensus 172 K~~aGA~~~i-T----Q~-------~Fd~~~~~~f~~~~~~~--Gi--~vPIi~GI 211 (296)
T PRK09432 172 KVDAGANRAI-T----QF-------FFDVESYLRFRDRCVSA--GI--DVEIVPGI 211 (296)
T ss_pred HHHcCCCeee-c----cc-------ccchHHHHHHHHHHHHc--CC--CCCEEeec
Confidence 46776321 1 11 23555566666667676 65 22455555
No 268
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=90.29 E-value=3.9 Score=36.12 Aligned_cols=14 Identities=7% Similarity=0.057 Sum_probs=7.7
Q ss_pred hhHHHHHHHHHHhh
Q psy2895 123 SSHFVSCIKHIRKL 136 (293)
Q Consensus 123 ~~~~~~ll~~i~~~ 136 (293)
.+++.++++.+.+.
T Consensus 150 ~~~~~~~~~~~~~~ 163 (273)
T cd07941 150 PEYALATLKAAAEA 163 (273)
T ss_pred HHHHHHHHHHHHhC
Confidence 45555666555544
No 269
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=90.26 E-value=12 Score=32.88 Aligned_cols=47 Identities=11% Similarity=0.053 Sum_probs=21.7
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCC
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLST 138 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~ 138 (293)
.+++.+.+.++++.+.|+..|.|.-- .-...+..+.++++.+++..+
T Consensus 140 ~~~~~~~~~~~~~~~~G~~~i~l~DT----~G~~~P~~v~~lv~~l~~~~~ 186 (268)
T cd07940 140 TDLDFLIEVVEAAIEAGATTINIPDT----VGYLTPEEFGELIKKLKENVP 186 (268)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCC----CCCCCHHHHHHHHHHHHHhCC
Confidence 34555555555555555555544211 101113455555555555444
No 270
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=90.19 E-value=2.6 Score=37.97 Aligned_cols=88 Identities=16% Similarity=0.197 Sum_probs=59.6
Q ss_pred HHHHHHHHHcCCCeeeecccc-chHHHhhcCCC---CCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHH
Q psy2895 154 NHVLKIFKQALPDVLNHNIET-VPRLYKKVRPG---SDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDM 229 (293)
Q Consensus 154 ~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~---~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l 229 (293)
.+.++.+.+.|++.|.+++=- ++.+.+.=... .+++...+.++.+++.. ++++++-+=+|..++.++..+.++.+
T Consensus 69 ~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~-~~pvsvKiR~g~~~~~~~~~~~~~~l 147 (309)
T PF01207_consen 69 AEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAV-PIPVSVKIRLGWDDSPEETIEFARIL 147 (309)
T ss_dssp HHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH--SSEEEEEEESECT--CHHHHHHHHHH
T ss_pred HHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhccc-ccceEEecccccccchhHHHHHHHHh
Confidence 344555555688888777644 45555442211 37888999999998764 58899999999888889999999999
Q ss_pred HhCCCCEEEeecC
Q psy2895 230 RNHNIDILTIGQY 242 (293)
Q Consensus 230 ~~l~~~~i~i~~~ 242 (293)
.+.|++.+.|+..
T Consensus 148 ~~~G~~~i~vH~R 160 (309)
T PF01207_consen 148 EDAGVSAITVHGR 160 (309)
T ss_dssp HHTT--EEEEECS
T ss_pred hhcccceEEEecC
Confidence 9999999999844
No 271
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=90.11 E-value=11 Score=32.21 Aligned_cols=110 Identities=17% Similarity=0.283 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHHhhCCCc--EEEEEc--CCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcC--CCCCHHHHHHHH
Q psy2895 123 SSHFVSCIKHIRKLSTKI--KIEILI--PDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVR--PGSDYKHSLNLL 195 (293)
Q Consensus 123 ~~~~~~ll~~i~~~~~~~--~i~~~~--~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~--~~~~~e~~l~~i 195 (293)
.+.+..-++.+++.+-.+ +|.+-. ..+..+ .+.++.|.+...|.+-+.+=. .+- -+|. |+-+.|+.++++
T Consensus 135 v~dyl~~l~~L~e~~irvvpHitiGL~~gki~~e-~kaIdiL~~~~~DalVl~vliPtpG--tkm~~~~pp~~eE~i~v~ 211 (275)
T COG1856 135 VEDYLRSLLLLKENGIRVVPHITIGLDFGKIHGE-FKAIDILVNYEPDALVLVVLIPTPG--TKMGNSPPPPVEEAIKVV 211 (275)
T ss_pred HHHHHHHHHHHHHcCceeceeEEEEeccCcccch-HHHHHHHhcCCCCeEEEEEEecCCc--hhccCCCCcCHHHHHHHH
Confidence 456667777777753211 222211 122232 678888888888887653322 122 2333 455899999999
Q ss_pred HHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEe
Q psy2895 196 KNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTI 239 (293)
Q Consensus 196 ~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i 239 (293)
+.||+.||+ +++.+-+==.||+.-++. ..+...|+|.|.+
T Consensus 212 ~~AR~~f~~-pv~iGCmrP~Ge~rvk~d---~~av~~gVd~It~ 251 (275)
T COG1856 212 KYARKKFPN-PVSIGCMRPRGEWRVKLD---KEAVLAGVDRITF 251 (275)
T ss_pred HHHHHhCCC-CeeEeecCcCchhHHHHH---HHHHHcCCceeec
Confidence 999999999 666666544577655444 5556789998754
No 272
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=90.02 E-value=12 Score=35.68 Aligned_cols=79 Identities=16% Similarity=0.192 Sum_probs=56.1
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEc-C--CCcCcHHHHHHHHHHcC
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILI-P--DFRNQINHVLKIFKQAL 164 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~-~--~~~~~~~e~l~~l~~aG 164 (293)
.+++-+.+.++++.+.|+..|.|.---. -..+..+.++++.+++..+ +.|.+.+ + |+.. .-.+..+ ++|
T Consensus 151 ~~~~~~~~~a~~l~~~Gad~I~i~Dt~G----~l~P~~v~~lv~alk~~~~-~pi~~H~Hnt~GlA~--AN~laAi-eaG 222 (448)
T PRK12331 151 HTIDYFVKLAKEMQEMGADSICIKDMAG----ILTPYVAYELVKRIKEAVT-VPLEVHTHATSGIAE--MTYLKAI-EAG 222 (448)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCC----CCCHHHHHHHHHHHHHhcC-CeEEEEecCCCCcHH--HHHHHHH-HcC
Confidence 6789999999999999999988842211 1225688899999998764 5666654 2 4332 4466666 689
Q ss_pred CCeeeecccc
Q psy2895 165 PDVLNHNIET 174 (293)
Q Consensus 165 ~~~i~~~les 174 (293)
++.+..++.+
T Consensus 223 ad~vD~sv~g 232 (448)
T PRK12331 223 ADIIDTAISP 232 (448)
T ss_pred CCEEEeeccc
Confidence 9999887765
No 273
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=89.91 E-value=7.7 Score=32.77 Aligned_cols=73 Identities=8% Similarity=-0.042 Sum_probs=50.9
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCC
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPD 166 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~ 166 (293)
..+.++..+.++.+.+.|++-+-++--.+ .-.+.++.+++.++. .+.+-...+++ .+.++...++|.+
T Consensus 18 ~~~~~~~~~~~~a~~~gGi~~iEvt~~~~---------~~~~~i~~l~~~~~~-~~~iGaGTV~~--~~~~~~a~~aGA~ 85 (206)
T PRK09140 18 GITPDEALAHVGALIEAGFRAIEIPLNSP---------DPFDSIAALVKALGD-RALIGAGTVLS--PEQVDRLADAGGR 85 (206)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeCCCc---------cHHHHHHHHHHHcCC-CcEEeEEecCC--HHHHHHHHHcCCC
Confidence 35789999999999999999887763322 123567777776653 23332223444 7788999999999
Q ss_pred eeeec
Q psy2895 167 VLNHN 171 (293)
Q Consensus 167 ~i~~~ 171 (293)
.+..+
T Consensus 86 fivsp 90 (206)
T PRK09140 86 LIVTP 90 (206)
T ss_pred EEECC
Confidence 88765
No 274
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=89.90 E-value=7.9 Score=32.92 Aligned_cols=115 Identities=17% Similarity=0.089 Sum_probs=69.2
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCc-EEEEEcCCCcCcHHHHHHHHHHcCC
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKI-KIEILIPDFRNQINHVLKIFKQALP 165 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~-~i~~~~~~~~~~~~e~l~~l~~aG~ 165 (293)
..+.++....++.+.+.|++.+-+|--.+ .-.+.++.+++.+++- .+.+-....++ .+.++...++|.
T Consensus 21 ~~~~~~a~~~~~al~~~Gi~~iEit~~~~---------~a~~~i~~l~~~~~~~p~~~vGaGTV~~--~~~~~~a~~aGA 89 (213)
T PRK06552 21 GESKEEALKISLAVIKGGIKAIEVTYTNP---------FASEVIKELVELYKDDPEVLIGAGTVLD--AVTARLAILAGA 89 (213)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCc---------cHHHHHHHHHHHcCCCCCeEEeeeeCCC--HHHHHHHHHcCC
Confidence 35789999999999999999766653322 2457778887766321 24343322344 788899999999
Q ss_pred CeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 166 DVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 166 ~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
+.+--+ +.+ -+.++.+++. |+.. +.| -.|++|+...+ +.|.+.+.+|
T Consensus 90 ~FivsP-------------~~~----~~v~~~~~~~--~i~~----iPG-~~T~~E~~~A~----~~Gad~vklF 136 (213)
T PRK06552 90 QFIVSP-------------SFN----RETAKICNLY--QIPY----LPG-CMTVTEIVTAL----EAGSEIVKLF 136 (213)
T ss_pred CEEECC-------------CCC----HHHHHHHHHc--CCCE----ECC-cCCHHHHHHHH----HcCCCEEEEC
Confidence 865421 211 1344455565 5533 334 23555554442 4677766664
No 275
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=89.89 E-value=14 Score=36.58 Aligned_cols=79 Identities=11% Similarity=0.135 Sum_probs=54.2
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcC---CCcCcHHHHHHHHHHcC
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIP---DFRNQINHVLKIFKQAL 164 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~---~~~~~~~e~l~~l~~aG 164 (293)
.+.+.+.+.++++.+.|+..|.|.--.. ......+.++++.+++.. ++.|.+.+- |+.. .-.+..+ ++|
T Consensus 152 ~~~~~~~~~a~~l~~~Gad~i~i~Dt~G----~l~P~~~~~lv~~lk~~~-~~pi~~H~Hnt~GlA~--An~laAi-eAG 223 (593)
T PRK14040 152 HTLQTWVDLAKQLEDMGVDSLCIKDMAG----LLKPYAAYELVSRIKKRV-DVPLHLHCHATTGLST--ATLLKAI-EAG 223 (593)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCC----CcCHHHHHHHHHHHHHhc-CCeEEEEECCCCchHH--HHHHHHH-HcC
Confidence 4678889999999999999888742221 112467889999998875 455555442 3332 4456665 689
Q ss_pred CCeeeecccc
Q psy2895 165 PDVLNHNIET 174 (293)
Q Consensus 165 ~~~i~~~les 174 (293)
++.+...+.+
T Consensus 224 a~~vD~ai~g 233 (593)
T PRK14040 224 IDGVDTAISS 233 (593)
T ss_pred CCEEEecccc
Confidence 9999887766
No 276
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=89.61 E-value=12 Score=31.75 Aligned_cols=113 Identities=17% Similarity=0.107 Sum_probs=73.1
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCC
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPD 166 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~ 166 (293)
..++|+.+..++.+.+-|++-|-++--.+ .-.+.|+.+++.+|+. .+-....++ .+.++...++|.+
T Consensus 21 ~~~~e~a~~~a~Ali~gGi~~IEITl~sp---------~a~e~I~~l~~~~p~~--lIGAGTVL~--~~q~~~a~~aGa~ 87 (211)
T COG0800 21 GDDVEEALPLAKALIEGGIPAIEITLRTP---------AALEAIRALAKEFPEA--LIGAGTVLN--PEQARQAIAAGAQ 87 (211)
T ss_pred eCCHHHHHHHHHHHHHcCCCeEEEecCCC---------CHHHHHHHHHHhCccc--EEccccccC--HHHHHHHHHcCCC
Confidence 35799999999999999999777663332 3458889999888743 332223445 8899999999987
Q ss_pred eeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 167 VLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 167 ~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
.+-- |+.+. +.++.+.++ |+.+.-++ -|..|+... .++|.+.+-+|
T Consensus 88 fiVs-------------P~~~~----ev~~~a~~~--~ip~~PG~-----~TptEi~~A----le~G~~~lK~F 133 (211)
T COG0800 88 FIVS-------------PGLNP----EVAKAANRY--GIPYIPGV-----ATPTEIMAA----LELGASALKFF 133 (211)
T ss_pred EEEC-------------CCCCH----HHHHHHHhC--CCcccCCC-----CCHHHHHHH----HHcChhheeec
Confidence 6531 22222 456677777 77553333 255555443 44676666554
No 277
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=89.59 E-value=3.5 Score=36.48 Aligned_cols=77 Identities=9% Similarity=0.054 Sum_probs=47.7
Q ss_pred HHHHHHHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHHHHHhC
Q psy2895 154 NHVLKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHDMRNH 232 (293)
Q Consensus 154 ~e~l~~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~~l~~l 232 (293)
...++.+.++|++.+.++-.+. +.+ .-+.+++.+.++.+.+...| ...+++|. +.+.++..+.++.++++
T Consensus 24 ~~~i~~l~~~Gv~gl~v~GstG-E~~-----~lt~~Er~~l~~~~~~~~~~---~~~vi~gv~~~~~~~~~~~a~~a~~~ 94 (284)
T cd00950 24 ERLIEFQIENGTDGLVVCGTTG-ESP-----TLSDEEHEAVIEAVVEAVNG---RVPVIAGTGSNNTAEAIELTKRAEKA 94 (284)
T ss_pred HHHHHHHHHcCCCEEEECCCCc-chh-----hCCHHHHHHHHHHHHHHhCC---CCcEEeccCCccHHHHHHHHHHHHHc
Confidence 5566666777777776542211 111 23677777777777666322 23466777 56777777777777777
Q ss_pred CCCEEEe
Q psy2895 233 NIDILTI 239 (293)
Q Consensus 233 ~~~~i~i 239 (293)
|++.+-+
T Consensus 95 G~d~v~~ 101 (284)
T cd00950 95 GADAALV 101 (284)
T ss_pred CCCEEEE
Confidence 7776554
No 278
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=89.52 E-value=4 Score=33.62 Aligned_cols=22 Identities=9% Similarity=0.040 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhCCCCEEEee
Q psy2895 219 DEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 219 ~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
.+.+.+.++.++.+|.+.+.+.
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~ 91 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVH 91 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEE
T ss_pred HHHHHHHHHHHHHhCCCceeec
Confidence 4555566666666666665554
No 279
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=89.48 E-value=5.9 Score=36.04 Aligned_cols=128 Identities=14% Similarity=0.099 Sum_probs=78.6
Q ss_pred HHHHHHHHH--CCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeeec
Q psy2895 94 KKIAYTINK--LKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNHN 171 (293)
Q Consensus 94 ~~~~~~~~~--~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~ 171 (293)
.+.++.+.+ .|+..|++-..+. ..+++.+.++.|++.+|+..|-. ....+ .|..+.|.++|+|.+.++
T Consensus 110 ~er~~~L~~~~~g~D~iviD~AhG------hs~~~i~~ik~ik~~~P~~~vIa--GNV~T--~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 110 FEKTKQILALSPALNFICIDVANG------YSEHFVQFVAKAREAWPDKTICA--GNVVT--GEMVEELILSGADIVKVG 179 (346)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCC------cHHHHHHHHHHHHHhCCCCcEEE--ecccC--HHHHHHHHHcCCCEEEEc
Confidence 445566666 4889888855443 24689999999999998754433 22333 788899999999999877
Q ss_pred ccc-chHHHhhcCC-CC-CHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 172 IET-VPRLYKKVRP-GS-DYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 172 les-s~~~~~~i~~-~~-~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
+=. |==+-+.... +. ...-+.++-+.+++. |.++-++-= -.+.-|+...+ ..|.+.+-+.
T Consensus 180 IGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~--gvpiIADGG---i~~sGDI~KAl----aaGAd~VMlG 242 (346)
T PRK05096 180 IGPGSVCTTRVKTGVGYPQLSAVIECADAAHGL--GGQIVSDGG---CTVPGDVAKAF----GGGADFVMLG 242 (346)
T ss_pred ccCCccccCccccccChhHHHHHHHHHHHHHHc--CCCEEecCC---cccccHHHHHH----HcCCCEEEeC
Confidence 643 3111111111 11 345567777777777 776655421 13334444433 3677777665
No 280
>PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=89.41 E-value=16 Score=33.12 Aligned_cols=123 Identities=13% Similarity=0.174 Sum_probs=73.2
Q ss_pred HHHHHHHHCCCcEEEEeeecCCCC-CCC----ChhHHHHHHHHHHhhCCCcEEEEEcC-CCcCcHHHHHHHHHHcCCCee
Q psy2895 95 KIAYTINKLKLNYVVITSVNRDDL-HDG----GSSHFVSCIKHIRKLSTKIKIEILIP-DFRNQINHVLKIFKQALPDVL 168 (293)
Q Consensus 95 ~~~~~~~~~G~~~i~l~gg~~~~l-~~~----~~~~~~~ll~~i~~~~~~~~i~~~~~-~~~~~~~e~l~~l~~aG~~~i 168 (293)
++++.+.+ |++.|.|- + |.+ ... ..+.+.+.++.+.+.. +..+.+++- +... ...+..|.+..++.+
T Consensus 165 ~e~~~L~~-G~~~IQiD--E-P~L~~~~~~~~~~~~~~~a~~~~~~~~-~~~i~l~tyfg~~~--~~~~~~l~~~~vd~l 237 (326)
T PRK08575 165 SLIKELSS-VVDAVEIH--E-PSIFAKGIKRDTLEKLPEVYKTMAKNV-NIEKHLMTYFEINN--LKRLDILFSLPVTYF 237 (326)
T ss_pred HHHHHHHc-CCCEEEec--C-cceeCCCCCHHHHHHHHHHHHHHHhcC-CCCEEEECCCCCcc--ccHHHHHhcCCCcEE
Confidence 34455555 99977662 3 444 221 1244445566654432 234555543 3211 236888888888887
Q ss_pred eeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec---CCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 169 NHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL---GENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 169 ~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~---gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
++-+= + +. ++ ++ .+.+.+|+-.+..++|=|. -||.+++.+.++.+.+++++.+.++
T Consensus 238 ~ld~~---------~-~~--~~-l~---~~~~~~~~k~l~~GviD~rn~~vE~~eev~~~i~~~~~~~~~~l~v~ 296 (326)
T PRK08575 238 GIDVI---------E-NL--KK-LG---RVYTYLKGRKVYLGILNARNTKMEKISTIRRIVNKVKRKGVSDIIVG 296 (326)
T ss_pred EEEec---------C-Ch--hH-HH---HHHhhCCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHHhcCCCeEEEe
Confidence 76431 1 11 11 22 3333345666778888776 6999999999999988888888776
No 281
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=89.41 E-value=4.5 Score=34.52 Aligned_cols=131 Identities=11% Similarity=0.125 Sum_probs=74.1
Q ss_pred hhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcC-CCcCcHHHHHHHHHHcCCCee
Q psy2895 90 IEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIP-DFRNQINHVLKIFKQALPDVL 168 (293)
Q Consensus 90 ~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~-~~~~~~~e~l~~l~~aG~~~i 168 (293)
..+..+.++.+.+.|++.+++..-+. .+. +...-.++++.+++.. .+.+... +..+ .+.++.+.++|++.+
T Consensus 28 ~~dp~~~a~~~~~~g~d~l~v~dl~~-~~~--~~~~~~~~i~~i~~~~---~~pv~~~GgI~~--~e~~~~~~~~Gad~v 99 (234)
T cd04732 28 SDDPVEVAKKWEEAGAKWLHVVDLDG-AKG--GEPVNLELIEEIVKAV---GIPVQVGGGIRS--LEDIERLLDLGVSRV 99 (234)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCCc-ccc--CCCCCHHHHHHHHHhc---CCCEEEeCCcCC--HHHHHHHHHcCCCEE
Confidence 45778888888889999998874332 111 1122346667776653 2334333 4444 777888888999998
Q ss_pred eeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEe------ec-CCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 169 NHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMV------GL-GENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 169 ~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~iv------G~-gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
-++-.. +. +++.+.+..+.+.+. -+.++.++-. |. ..+..+..+.++.+.+.|++.+.+.
T Consensus 100 vigs~~----l~------dp~~~~~i~~~~g~~--~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~ 166 (234)
T cd04732 100 IIGTAA----VK------NPELVKELLKEYGGE--RIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYT 166 (234)
T ss_pred EECchH----Hh------ChHHHHHHHHHcCCc--eEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEE
Confidence 776322 10 122222222222111 2233333222 11 2345566777888889999988775
No 282
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=89.38 E-value=12 Score=31.66 Aligned_cols=139 Identities=15% Similarity=0.146 Sum_probs=80.4
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCC------C---CCCChhHHHHHHHHHHhhCC-CcEEEEEcC-CCcCcHHHH
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDD------L---HDGGSSHFVSCIKHIRKLST-KIKIEILIP-DFRNQINHV 156 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~------l---~~~~~~~~~~ll~~i~~~~~-~~~i~~~~~-~~~~~~~e~ 156 (293)
-++++..+.++.+.+.|+..|-|..|.+.. + .....+.+.++++.+++..+ .+.+++... +...+..+.
T Consensus 64 ~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~ 143 (231)
T cd02801 64 SDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLEL 143 (231)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHH
Confidence 358899999999988899999887665310 0 01235678899999987653 234443222 111123567
Q ss_pred HHHHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCE
Q psy2895 157 LKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDI 236 (293)
Q Consensus 157 l~~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~ 236 (293)
++.+.++|++.+++.--+.+. ...++.++ +.++.+++. +++++ +..|--.|.+++.+.+. .-+++.
T Consensus 144 ~~~l~~~Gvd~i~v~~~~~~~---~~~~~~~~----~~~~~i~~~-~~ipv---i~~Ggi~~~~d~~~~l~---~~gad~ 209 (231)
T cd02801 144 AKALEDAGASALTVHGRTREQ---RYSGPADW----DYIAEIKEA-VSIPV---IANGDIFSLEDALRCLE---QTGVDG 209 (231)
T ss_pred HHHHHHhCCCEEEECCCCHHH---cCCCCCCH----HHHHHHHhC-CCCeE---EEeCCCCCHHHHHHHHH---hcCCCE
Confidence 888888999998874222121 11222333 445556554 23332 11232357777666543 347888
Q ss_pred EEee
Q psy2895 237 LTIG 240 (293)
Q Consensus 237 i~i~ 240 (293)
+.+.
T Consensus 210 V~ig 213 (231)
T cd02801 210 VMIG 213 (231)
T ss_pred EEEc
Confidence 8775
No 283
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=89.35 E-value=3.5 Score=35.27 Aligned_cols=69 Identities=16% Similarity=0.220 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcC-CCcCcHHHHHHHHHHcCCCeee
Q psy2895 91 EEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIP-DFRNQINHVLKIFKQALPDVLN 169 (293)
Q Consensus 91 eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~-~~~~~~~e~l~~l~~aG~~~i~ 169 (293)
+++.+.++.+.+.|++.|.+. + + .+++.+++.+|++.+.+.+. ...+ .+.++.+++.|++++.
T Consensus 2 ~~~~~~l~~l~~~g~dgi~v~--~---~---------g~~~~~k~~~~~~~i~~~~~~nv~N--~~s~~~~~~~G~~~i~ 65 (233)
T PF01136_consen 2 EELEKYLDKLKELGVDGILVS--N---P---------GLLELLKELGPDLKIIADYSLNVFN--SESARFLKELGASRIT 65 (233)
T ss_pred hHHHHHHHHHHhCCCCEEEEc--C---H---------HHHHHHHHhCCCCcEEEecCccCCC--HHHHHHHHHcCCCEEE
Confidence 577888888999999987764 1 1 45667778877777777553 3333 7889999999999999
Q ss_pred eccccc
Q psy2895 170 HNIETV 175 (293)
Q Consensus 170 ~~less 175 (293)
++.|-+
T Consensus 66 ls~EL~ 71 (233)
T PF01136_consen 66 LSPELS 71 (233)
T ss_pred ECccCC
Confidence 988763
No 284
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=89.19 E-value=15 Score=32.28 Aligned_cols=83 Identities=16% Similarity=0.149 Sum_probs=51.7
Q ss_pred ChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCC---------------ChhHHHHHHHHHHhhCCCcEEEEEc--CCCcC
Q psy2895 89 DIEEPKKIAYTINKLKLNYVVITSVNRDDLHDG---------------GSSHFVSCIKHIRKLSTKIKIEILI--PDFRN 151 (293)
Q Consensus 89 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~---------------~~~~~~~ll~~i~~~~~~~~i~~~~--~~~~~ 151 (293)
+.+.-.+.++.+.+.|+.-|-|.--..+++.+. +.+.+.++++++++..+++.+-+++ +-+..
T Consensus 24 ~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~ 103 (258)
T PRK13111 24 DLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPIFQ 103 (258)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHhh
Confidence 677788888888889999776643221112111 2345677778887554455544543 31111
Q ss_pred -cHHHHHHHHHHcCCCeeeec
Q psy2895 152 -QINHVLKIFKQALPDVLNHN 171 (293)
Q Consensus 152 -~~~e~l~~l~~aG~~~i~~~ 171 (293)
.+++.++.++++|++.+.++
T Consensus 104 ~G~e~f~~~~~~aGvdGviip 124 (258)
T PRK13111 104 YGVERFAADAAEAGVDGLIIP 124 (258)
T ss_pred cCHHHHHHHHHHcCCcEEEEC
Confidence 12678999999999998763
No 285
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=89.11 E-value=11 Score=36.50 Aligned_cols=126 Identities=11% Similarity=0.043 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeee
Q psy2895 91 EEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNH 170 (293)
Q Consensus 91 eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~ 170 (293)
+++.+.++++.+.|+.-|-+.++... + +.+.+..+++.+++.. +..+.+ |+.. .+.+++--++|.+.++
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st~--p--~~~~v~~~V~~l~~~~-~~pISI---DT~~--~~v~eaAL~aGAdiIN- 233 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSFD--D--DPDVVKEKVKTALDAL-DSPVIA---DTPT--LDELYEALKAGASGVI- 233 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCC--C--cHHHHHHHHHHHHhhC-CCcEEE---eCCC--HHHHHHHHHcCCCEEE-
Confidence 88999999999999998888766431 1 2457888888888753 334544 3333 5566665567988776
Q ss_pred cccc--chHHHhhcC---------C---CCCHHHHHHHHHHHHHhCCCc-eeeEeEEeecCCCHHHHHHHHHHHHh
Q psy2895 171 NIET--VPRLYKKVR---------P---GSDYKHSLNLLKNFKKLYPNI-LTKSGIMVGLGENDEEILTVIHDMRN 231 (293)
Q Consensus 171 ~les--s~~~~~~i~---------~---~~~~e~~l~~i~~~~~~~pgi-~~~~~~ivG~gEt~ed~~~~l~~l~~ 231 (293)
++.. .+++.+.+. + ...++...+.++.+.++ |+ .+-.|=++|+ ...++.+++..++.
T Consensus 234 sVs~~~~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~~ie~a~~~--Gi~~IIlDPglg~--~~~~l~~sL~~l~~ 305 (499)
T TIGR00284 234 MPDVENAVELASEKKLPEDAFVVVPGNQPTNYEELAKAVKKLRTS--GYSKVAADPSLSP--PLLGLLESIIRFRR 305 (499)
T ss_pred ECCccchhHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHHHHC--CCCcEEEeCCCCc--chHHHHHHHHHHHH
Confidence 3333 244432111 1 22456777888999999 99 5666666665 23346666666653
No 286
>TIGR02146 LysS_fung_arch homocitrate synthase. This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs.
Probab=89.10 E-value=17 Score=32.92 Aligned_cols=140 Identities=14% Similarity=0.099 Sum_probs=88.8
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCC
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPD 166 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~ 166 (293)
.++.++.++.+..+.+.|++.+-++... .. ....+..+.+........+..+.+ .. .+.++...++|++
T Consensus 16 ~~~~~~ki~i~~~l~~~Gv~~iE~g~p~---~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~a~~~~~~ 84 (344)
T TIGR02146 16 NFSTEQKIEIAKALDEFGIDYIEVTHPA---AS----KQSRIDIEIIASLGLKANIVTHIR--CR--LDDAKVAVELGVD 84 (344)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCC---CC----HHHHHHHHHHHhcCCCcEEEEECC--CC--HHHHHHHHHCCcC
Confidence 5789999999999999999988776532 11 112233343433221123333332 11 4456677788998
Q ss_pred eeeeccccc-hHHHhhcCC--CCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEe
Q psy2895 167 VLNHNIETV-PRLYKKVRP--GSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTI 239 (293)
Q Consensus 167 ~i~~~less-~~~~~~i~~--~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i 239 (293)
.+.+..-.+ -.....+.. ....+.....++.+++. |+.+...++-.+....+++.+..+.+.+.+++.+.+
T Consensus 85 ~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~~~e~a~~~--g~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~i~~ 158 (344)
T TIGR02146 85 GIDIFFGTSKLLRIAEHRSDAKSILESARETIEYAKSA--GLEVRFSAEDTFRSELADLLSIYETVGVFGVDRVGI 158 (344)
T ss_pred EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEEeeCCCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 877654222 122222321 22345677888889988 988777776666677889999999999999998766
No 287
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=88.93 E-value=9.8 Score=32.06 Aligned_cols=126 Identities=15% Similarity=0.097 Sum_probs=67.8
Q ss_pred hhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcC-CCcCcHHHHHHHHHHcCCCee
Q psy2895 90 IEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIP-DFRNQINHVLKIFKQALPDVL 168 (293)
Q Consensus 90 ~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~-~~~~~~~e~l~~l~~aG~~~i 168 (293)
.+.+.+.++.+.+.|++.++|..-+++ - ..+.+...++++..+ +..+++... |...+..+.++.|.+.|++++
T Consensus 71 ~~~M~~dI~~~~~~GadG~VfG~L~~d-g-~iD~~~~~~Li~~a~----~~~~tFHRAfD~~~d~~~al~~L~~lG~~rV 144 (201)
T PF03932_consen 71 IEIMKEDIRMLRELGADGFVFGALTED-G-EIDEEALEELIEAAG----GMPVTFHRAFDEVPDPEEALEQLIELGFDRV 144 (201)
T ss_dssp HHHHHHHHHHHHHTT-SEEEE--BETT-S-SB-HHHHHHHHHHHT----TSEEEE-GGGGGSSTHHHHHHHHHHHT-SEE
T ss_pred HHHHHHHHHHHHHcCCCeeEEEeECCC-C-CcCHHHHHHHHHhcC----CCeEEEeCcHHHhCCHHHHHHHHHhcCCCEE
Confidence 455667777888899999888665532 1 234566666666654 457777654 555555778999999999998
Q ss_pred ee--ccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 169 NH--NIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 169 ~~--~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
-= +..+. ....+...+.++.+. +.+ .+|+|=|=+.+.+.+.+ ++.|+..++.+
T Consensus 145 LTSGg~~~a---------~~g~~~L~~lv~~a~---~~i----~Im~GgGv~~~nv~~l~---~~tg~~~~H~s 199 (201)
T PF03932_consen 145 LTSGGAPTA---------LEGIENLKELVEQAK---GRI----EIMPGGGVRAENVPELV---EETGVREIHGS 199 (201)
T ss_dssp EESTTSSST---------TTCHHHHHHHHHHHT---TSS----EEEEESS--TTTHHHHH---HHHT-SEEEET
T ss_pred ECCCCCCCH---------HHHHHHHHHHHHHcC---CCc----EEEecCCCCHHHHHHHH---HhhCCeEEeec
Confidence 42 21111 112333333233221 123 57888766655555443 33677766653
No 288
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=88.89 E-value=18 Score=35.70 Aligned_cols=80 Identities=5% Similarity=0.043 Sum_probs=56.9
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcC---CCcCcHHHHHHHHHHc
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIP---DFRNQINHVLKIFKQA 163 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~---~~~~~~~e~l~~l~~a 163 (293)
..+++.+.+.++++.+.|+..|.|.---. -.....+.++++.+++.. ++.|.+.+- |+.. .-.+..+ ++
T Consensus 150 ~~t~e~~~~~ak~l~~~Gad~I~IkDtaG----~l~P~~v~~lv~alk~~~-~ipi~~H~Hnt~Gla~--an~laAi-ea 221 (596)
T PRK14042 150 VHTLDNFLELGKKLAEMGCDSIAIKDMAG----LLTPTVTVELYAGLKQAT-GLPVHLHSHSTSGLAS--ICHYEAV-LA 221 (596)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCccc----CCCHHHHHHHHHHHHhhc-CCEEEEEeCCCCCcHH--HHHHHHH-Hh
Confidence 47899999999999999999988842211 112568889999999875 356666542 3332 4455555 68
Q ss_pred CCCeeeecccc
Q psy2895 164 LPDVLNHNIET 174 (293)
Q Consensus 164 G~~~i~~~les 174 (293)
|++.+..++.+
T Consensus 222 Gad~iD~ai~g 232 (596)
T PRK14042 222 GCNHIDTAISS 232 (596)
T ss_pred CCCEEEecccc
Confidence 99999887765
No 289
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=88.76 E-value=11 Score=33.98 Aligned_cols=88 Identities=9% Similarity=-0.004 Sum_probs=51.1
Q ss_pred CChhHHHHHHHHHHHCCCcEEE--EeeecCC--C---CCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHH
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVV--ITSVNRD--D---LHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIF 160 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~--l~gg~~~--~---l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l 160 (293)
-+++++.+.++++.+.|+..|- .+|+... + ....+.+.+..+++..++. +..+.+...+ ...++.+
T Consensus 117 ~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~--g~~v~~H~~~-----~~~i~~~ 189 (342)
T cd01299 117 DGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKA--GLYVAAHAYG-----AEAIRRA 189 (342)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHc--CCEEEEEeCC-----HHHHHHH
Confidence 4589999999999999998763 3333210 0 0122357788888888876 3445544321 2334444
Q ss_pred HHcCCCeeeeccccchHHHhhc
Q psy2895 161 KQALPDVLNHNIETVPRLYKKV 182 (293)
Q Consensus 161 ~~aG~~~i~~~less~~~~~~i 182 (293)
.++|++.+.+..-.+++.++.|
T Consensus 190 l~~G~~~i~H~~~~~~~~~~~l 211 (342)
T cd01299 190 IRAGVDTIEHGFLIDDETIELM 211 (342)
T ss_pred HHcCCCEEeecCCCCHHHHHHH
Confidence 5677777766543334443333
No 290
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=88.74 E-value=10 Score=33.24 Aligned_cols=142 Identities=18% Similarity=0.177 Sum_probs=79.1
Q ss_pred ChhHHHHHHHHHHHCCCcEEEEeeecCCCCCC---------------CChhHHHHHHHHHHhhCCCcEEEEEc--CCCcC
Q psy2895 89 DIEEPKKIAYTINKLKLNYVVITSVNRDDLHD---------------GGSSHFVSCIKHIRKLSTKIKIEILI--PDFRN 151 (293)
Q Consensus 89 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~---------------~~~~~~~~ll~~i~~~~~~~~i~~~~--~~~~~ 151 (293)
+.+.-.+.++.+.+.|+.-+-|.--..+++.+ .+.+.+.++++.+++..+++.+-+++ +.+..
T Consensus 22 ~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~ 101 (259)
T PF00290_consen 22 DLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMTYYNPIFQ 101 (259)
T ss_dssp SHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEeeccHHhc
Confidence 57777888888888888865553222111211 12456778888888555677776654 21110
Q ss_pred -cHHHHHHHHHHcCCCeeee---ccccchHHHhhcC----------CCCCHHHHHHHHHHHHHhCCCce--eeEeEEeec
Q psy2895 152 -QINHVLKIFKQALPDVLNH---NIETVPRLYKKVR----------PGSDYKHSLNLLKNFKKLYPNIL--TKSGIMVGL 215 (293)
Q Consensus 152 -~~~e~l~~l~~aG~~~i~~---~less~~~~~~i~----------~~~~~e~~l~~i~~~~~~~pgi~--~~~~~ivG~ 215 (293)
-++..++.++++|++.+-+ +.|-++++.+... ...+.+++++.+.... +|+- ++..-+.|.
T Consensus 102 ~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a---~gFiY~vs~~GvTG~ 178 (259)
T PF00290_consen 102 YGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQA---SGFIYLVSRMGVTGS 178 (259)
T ss_dssp H-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH----SSEEEEESSSSSSST
T ss_pred cchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhC---CcEEEeeccCCCCCC
Confidence 1256788888999998765 4444444433221 2335566665544332 2552 112222333
Q ss_pred -CCCHHHHHHHHHHHHhCC
Q psy2895 216 -GENDEEILTVIHDMRNHN 233 (293)
Q Consensus 216 -gEt~ed~~~~l~~l~~l~ 233 (293)
.+-..++.+.+..+++.-
T Consensus 179 ~~~~~~~l~~~i~~ik~~~ 197 (259)
T PF00290_consen 179 RTELPDELKEFIKRIKKHT 197 (259)
T ss_dssp TSSCHHHHHHHHHHHHHTT
T ss_pred cccchHHHHHHHHHHHhhc
Confidence 334677888888888876
No 291
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=88.61 E-value=8.5 Score=33.07 Aligned_cols=46 Identities=13% Similarity=0.169 Sum_probs=35.3
Q ss_pred CCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhh
Q psy2895 86 DPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKL 136 (293)
Q Consensus 86 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~ 136 (293)
..++.|||.+...++.+.|-.-+.|.+|++ ++ +.-+.|-++++.+.
T Consensus 57 a~~tLeeIi~~m~~a~~~Gk~VvRLhSGDp-si----YgA~~EQm~~L~~~ 102 (254)
T COG2875 57 ASLTLEEIIDLMVDAVREGKDVVRLHSGDP-SI----YGALAEQMRELEAL 102 (254)
T ss_pred CcCCHHHHHHHHHHHHHcCCeEEEeecCCh-hH----HHHHHHHHHHHHHc
Confidence 468999999999999999998889999995 33 23455556666654
No 292
>PRK03739 2-isopropylmalate synthase; Validated
Probab=88.55 E-value=26 Score=34.35 Aligned_cols=137 Identities=10% Similarity=0.099 Sum_probs=78.3
Q ss_pred CCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhC---CCcEEEEEcCCCcCcHHHHHHHHHH
Q psy2895 86 DPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLS---TKIKIEILIPDFRNQINHVLKIFKQ 162 (293)
Q Consensus 86 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~---~~~~i~~~~~~~~~~~~e~l~~l~~ 162 (293)
..++.++=+++++.|.+.|++.|-++ . |...+ .=.+.++.|.+.. ++..+...++....+++..++.++.
T Consensus 47 v~~s~~~Ki~ia~~L~~~GV~~IE~G--f-P~~s~----~e~e~v~~i~~~~~~~~~~~i~~l~r~~~~di~~a~~a~~~ 119 (552)
T PRK03739 47 EPMSPERKLRMFDLLVKIGFKEIEVG--F-PSASQ----TDFDFVRELIEEGLIPDDVTIQVLTQAREHLIERTFEALEG 119 (552)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEE--C-CCcCh----HHHHHHHHHHHhcCCCCCCEEEEEeccchhHHHHHHHHhcC
Confidence 46899999999999999999987654 3 33332 2235666665442 2445555554222222344445544
Q ss_pred cCCCeeeeccccchHHHh-hcCCC--CCHHHHHHHHHHHHHhCCCce-eeEeEEeec-CC----C-HHHHHHHHHHHHh
Q psy2895 163 ALPDVLNHNIETVPRLYK-KVRPG--SDYKHSLNLLKNFKKLYPNIL-TKSGIMVGL-GE----N-DEEILTVIHDMRN 231 (293)
Q Consensus 163 aG~~~i~~~less~~~~~-~i~~~--~~~e~~l~~i~~~~~~~pgi~-~~~~~ivG~-gE----t-~ed~~~~l~~l~~ 231 (293)
++...+++.+-+|+-..+ ++++. ...+.+.+.++.++++ |.. ..+.+-+-+ +| + .+.+.+.++.+.+
T Consensus 120 ~~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~--~~~~~~~~~~v~f~~EDasR~d~~~l~~~~~~a~~ 196 (552)
T PRK03739 120 AKRAIVHLYNSTSPLQRRVVFGKDRDGIKAIAVDGARLVKEL--AAKYPETEWRFEYSPESFTGTELDFALEVCDAVID 196 (552)
T ss_pred CCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHh--cccccCceeEEEEecccCCCCCHHHHHHHHHHHHH
Confidence 455578877666654443 44432 2445556667777777 642 122233333 55 4 4556667777655
No 293
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=88.50 E-value=5.5 Score=36.55 Aligned_cols=16 Identities=13% Similarity=0.156 Sum_probs=9.8
Q ss_pred ChhHHHHHHHHHHhhC
Q psy2895 122 GSSHFVSCIKHIRKLS 137 (293)
Q Consensus 122 ~~~~~~~ll~~i~~~~ 137 (293)
+.+++.++++.+.+.+
T Consensus 195 ~~~~l~~~~~~~~~~G 210 (347)
T PLN02746 195 PPSKVAYVAKELYDMG 210 (347)
T ss_pred CHHHHHHHHHHHHHcC
Confidence 4566666666666553
No 294
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=88.29 E-value=9.2 Score=32.85 Aligned_cols=130 Identities=8% Similarity=0.070 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcC-CCcCcHHHHHHHHHHcCCCeee
Q psy2895 91 EEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIP-DFRNQINHVLKIFKQALPDVLN 169 (293)
Q Consensus 91 eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~-~~~~~~~e~l~~l~~aG~~~i~ 169 (293)
.+..+.++.+.+.|++.+++.--+. ...+.....+.++.+.+.. .+.+... |..+ .+.++.+-++|++.+.
T Consensus 32 ~~~~e~a~~~~~~G~~~l~i~dl~~---~~~~~~~~~~~i~~i~~~~---~~~l~v~GGi~~--~~~~~~~~~~Ga~~v~ 103 (241)
T PRK13585 32 GDPVEVAKRWVDAGAETLHLVDLDG---AFEGERKNAEAIEKIIEAV---GVPVQLGGGIRS--AEDAASLLDLGVDRVI 103 (241)
T ss_pred CCHHHHHHHHHHcCCCEEEEEechh---hhcCCcccHHHHHHHHHHc---CCcEEEcCCcCC--HHHHHHHHHcCCCEEE
Confidence 3567777888889999987763331 1111223345556665543 2333333 5555 6677887789999998
Q ss_pred eccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeE----E--eec-CCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 170 HNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGI----M--VGL-GENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 170 ~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~----i--vG~-gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
++-...+ +.+.+.+..+.+... .+.++.++ + -|. .++..+..+..+.+.+.|++.+.+.
T Consensus 104 iGs~~~~----------~~~~~~~i~~~~g~~--~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~ 169 (241)
T PRK13585 104 LGTAAVE----------NPEIVRELSEEFGSE--RVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSILFT 169 (241)
T ss_pred EChHHhh----------ChHHHHHHHHHhCCC--cEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEE
Confidence 8743211 122222222222111 12223332 1 233 2333366777777888999988775
No 295
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=88.28 E-value=4.5 Score=36.02 Aligned_cols=77 Identities=9% Similarity=0.022 Sum_probs=44.5
Q ss_pred HHHHHHHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHHHHHhC
Q psy2895 154 NHVLKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHDMRNH 232 (293)
Q Consensus 154 ~e~l~~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~~l~~l 232 (293)
...++.+.+.|++.+.+.--+. +.+ .-+.+++.+.++.+.+..+| ...+++|. +.+.++..+.++.++++
T Consensus 25 ~~~i~~l~~~Gv~gi~~~Gs~G-E~~-----~ls~~Er~~~~~~~~~~~~~---~~~vi~gv~~~~~~~~i~~a~~a~~~ 95 (292)
T PRK03170 25 RKLVDYLIANGTDGLVVVGTTG-ESP-----TLTHEEHEELIRAVVEAVNG---RVPVIAGTGSNSTAEAIELTKFAEKA 95 (292)
T ss_pred HHHHHHHHHcCCCEEEECCcCC-ccc-----cCCHHHHHHHHHHHHHHhCC---CCcEEeecCCchHHHHHHHHHHHHHc
Confidence 4555666666777765432111 111 23666777777766665333 13456666 45667777777777777
Q ss_pred CCCEEEe
Q psy2895 233 NIDILTI 239 (293)
Q Consensus 233 ~~~~i~i 239 (293)
|++.+.+
T Consensus 96 G~d~v~~ 102 (292)
T PRK03170 96 GADGALV 102 (292)
T ss_pred CCCEEEE
Confidence 7776554
No 296
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=88.23 E-value=7.4 Score=35.56 Aligned_cols=80 Identities=8% Similarity=0.008 Sum_probs=54.9
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhC-CCcEEEEEc--C-CCcCcHHHHHHHHHHc
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLS-TKIKIEILI--P-DFRNQINHVLKIFKQA 163 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~-~~~~i~~~~--~-~~~~~~~e~l~~l~~a 163 (293)
.+++++.+.++.+.+.|+..|.+.--.. ...++.+.++++.+++.. |++.+.+.. + ++.. --.+..+ ++
T Consensus 141 ~~~e~l~~~a~~~~~~Ga~~i~i~DT~G----~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~--ANslaAi-~a 213 (337)
T PRK08195 141 APPEKLAEQAKLMESYGAQCVYVVDSAG----ALLPEDVRDRVRALRAALKPDTQVGFHGHNNLGLGV--ANSLAAV-EA 213 (337)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEeCCCCC----CCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHH--HHHHHHH-Hh
Confidence 5789999999999999999888742221 122578889999998875 566666644 2 3321 3455665 58
Q ss_pred CCCeeeecccc
Q psy2895 164 LPDVLNHNIET 174 (293)
Q Consensus 164 G~~~i~~~les 174 (293)
|++++..++-+
T Consensus 214 Ga~~iD~Sl~G 224 (337)
T PRK08195 214 GATRIDGSLAG 224 (337)
T ss_pred CCCEEEecChh
Confidence 99998876654
No 297
>PRK12999 pyruvate carboxylase; Reviewed
Probab=88.15 E-value=27 Score=37.51 Aligned_cols=139 Identities=10% Similarity=0.084 Sum_probs=81.3
Q ss_pred CCChhHHHHHHHHHHHC--CCcEEEEeeecCCCC--CCCChhHHHHHHHHHHhhCCCcEEEEEc---C--CCc---CcH-
Q psy2895 87 PLDIEEPKKIAYTINKL--KLNYVVITSVNRDDL--HDGGSSHFVSCIKHIRKLSTKIKIEILI---P--DFR---NQI- 153 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~--G~~~i~l~gg~~~~l--~~~~~~~~~~ll~~i~~~~~~~~i~~~~---~--~~~---~~~- 153 (293)
.++.++.+.++..+.+. |+..|-..||..-+. +... +.=.+.++.+++..|++.+.... + ++. +++
T Consensus 551 r~~~~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~-e~p~erl~~~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~ 629 (1146)
T PRK12999 551 RVRTKDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLK-EDPWERLAELREAAPNVLFQMLLRGSNAVGYTNYPDNVV 629 (1146)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccC-CCHHHHHHHHHHhCCCCeEEEEecccccccccCCCchHH
Confidence 47899999999999999 999887777643111 1111 11135567777777776666533 1 221 122
Q ss_pred HHHHHHHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEee------c--CCCHHHHHHH
Q psy2895 154 NHVLKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVG------L--GENDEEILTV 225 (293)
Q Consensus 154 ~e~l~~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG------~--gEt~ed~~~~ 225 (293)
.+.++...++|+|.+.+.--.+ ..+.....++.++++ |......+-+- . .-|.+-+.+.
T Consensus 630 ~~~i~~a~~~Gid~~rifd~ln-----------d~~~~~~~i~~vk~~--g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~ 696 (1146)
T PRK12999 630 RAFVREAAAAGIDVFRIFDSLN-----------WVENMRVAIDAVRET--GKIAEAAICYTGDILDPARAKYDLDYYVDL 696 (1146)
T ss_pred HHHHHHHHHcCCCEEEEeccCC-----------hHHHHHHHHHHHHHc--CCeEEEEEEEEecCCCCCCCCCCHHHHHHH
Confidence 4557888889999988752111 133345556666666 64322211111 1 1366666777
Q ss_pred HHHHHhCCCCEEEe
Q psy2895 226 IHDMRNHNIDILTI 239 (293)
Q Consensus 226 l~~l~~l~~~~i~i 239 (293)
++.+.+.|++.+.+
T Consensus 697 a~~l~~~Ga~~i~i 710 (1146)
T PRK12999 697 AKELEKAGAHILAI 710 (1146)
T ss_pred HHHHHHcCCCEEEE
Confidence 77777777776665
No 298
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=88.11 E-value=10 Score=36.68 Aligned_cols=129 Identities=14% Similarity=0.157 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeeec
Q psy2895 92 EPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNHN 171 (293)
Q Consensus 92 ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~ 171 (293)
+..+.++.+.+.|+..|.+...+.. .....+.+++|++.+|+ +.+...+..+ .+..+.+.++|+|.+.++
T Consensus 241 ~~~~~~~~l~~ag~d~i~id~a~G~------s~~~~~~i~~ik~~~~~--~~v~aG~V~t--~~~a~~~~~aGad~I~vg 310 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVDSSQGN------SIYQIDMIKKLKSNYPH--VDIIAGNVVT--ADQAKNLIDAGADGLRIG 310 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEecCCCC------chHHHHHHHHHHhhCCC--ceEEECCcCC--HHHHHHHHHcCCCEEEEC
Confidence 3378889999999999988764431 23457889999998775 3443333344 778888999999999776
Q ss_pred ccc-chHHHh-hcCCCC-CHHHHHHHHHHHHHhCCCceeeEeEEe-ecCCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 172 IET-VPRLYK-KVRPGS-DYKHSLNLLKNFKKLYPNILTKSGIMV-GLGENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 172 les-s~~~~~-~i~~~~-~~e~~l~~i~~~~~~~pgi~~~~~~iv-G~gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
+-. +-..-+ ...-+. .+..+.++.+.+++. |+++ |. |=-.|..|+...+ .+|.+.+-+.
T Consensus 311 ~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~--~v~v----IadGGi~~~~di~kAl----a~GA~~Vm~G 373 (495)
T PTZ00314 311 MGSGSICITQEVCAVGRPQASAVYHVARYARER--GVPC----IADGGIKNSGDICKAL----ALGADCVMLG 373 (495)
T ss_pred CcCCcccccchhccCCCChHHHHHHHHHHHhhc--CCeE----EecCCCCCHHHHHHHH----HcCCCEEEEC
Confidence 532 211111 111121 344555666666766 7643 44 1135666766554 4888887765
No 299
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=87.87 E-value=15 Score=33.68 Aligned_cols=127 Identities=18% Similarity=0.242 Sum_probs=73.1
Q ss_pred CCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCC
Q psy2895 86 DPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALP 165 (293)
Q Consensus 86 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~ 165 (293)
...+.+.-++++.++.+.|..-|-++-.+ ..-.+.+..|++..+ +-+.. |..=+ ...+-.-.++|+
T Consensus 37 ~T~Dv~atv~Qi~~L~~aGceiVRvav~~---------~~~a~al~~I~~~~~---iPlvA-DIHFd-~~lAl~a~~~G~ 102 (360)
T PRK00366 37 DTADVEATVAQIKRLARAGCEIVRVAVPD---------MEAAAALPEIKKQLP---VPLVA-DIHFD-YRLALAAAEAGA 102 (360)
T ss_pred CchhHHHHHHHHHHHHHcCCCEEEEccCC---------HHHHHhHHHHHHcCC---CCEEE-ecCCC-HHHHHHHHHhCC
Confidence 34567888888889999999987775322 234566677776532 22211 11111 223333335677
Q ss_pred CeeeeccccchHHHhhcCCC--CC-HHHHHHHHHHHHHhCCCceeeEeEEeec---------CC-CHHH----HHHHHHH
Q psy2895 166 DVLNHNIETVPRLYKKVRPG--SD-YKHSLNLLKNFKKLYPNILTKSGIMVGL---------GE-NDEE----ILTVIHD 228 (293)
Q Consensus 166 ~~i~~~less~~~~~~i~~~--~~-~e~~l~~i~~~~~~~pgi~~~~~~ivG~---------gE-t~ed----~~~~l~~ 228 (293)
+.+.++ |+ .+ .+.+.+.++.++++ |+++..++=-|- |+ |.+- ..++++.
T Consensus 103 ~~iRIN------------PGNig~~~~~v~~vv~~ak~~--~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~ 168 (360)
T PRK00366 103 DALRIN------------PGNIGKRDERVREVVEAAKDY--GIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKI 168 (360)
T ss_pred CEEEEC------------CCCCCchHHHHHHHHHHHHHC--CCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 777543 22 13 56677778888888 777666555442 33 4433 3445567
Q ss_pred HHhCCCCEEEee
Q psy2895 229 MRNHNIDILTIG 240 (293)
Q Consensus 229 l~~l~~~~i~i~ 240 (293)
+++++++.+-++
T Consensus 169 le~~~f~~iviS 180 (360)
T PRK00366 169 LEELGFDDIKIS 180 (360)
T ss_pred HHHCCCCcEEEE
Confidence 777887765553
No 300
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=87.78 E-value=5.4 Score=35.17 Aligned_cols=77 Identities=9% Similarity=0.083 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHHHHHhC
Q psy2895 154 NHVLKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHDMRNH 232 (293)
Q Consensus 154 ~e~l~~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~~l~~l 232 (293)
.+.++.+.+.|++.+.+.--+. +.+ .-+.+++.+.++.+.+..+| ...+|+|. +.+.++..+..+.++++
T Consensus 21 ~~~i~~l~~~Gv~gi~~~GstG-E~~-----~ls~~Er~~l~~~~~~~~~~---~~~vi~gv~~~~~~~~i~~a~~a~~~ 91 (281)
T cd00408 21 RRLVEFLIEAGVDGLVVLGTTG-EAP-----TLTDEERKEVIEAVVEAVAG---RVPVIAGVGANSTREAIELARHAEEA 91 (281)
T ss_pred HHHHHHHHHcCCCEEEECCCCc-ccc-----cCCHHHHHHHHHHHHHHhCC---CCeEEEecCCccHHHHHHHHHHHHHc
Confidence 4455555556666655432111 111 22556666666666555221 23455666 45556666666666666
Q ss_pred CCCEEEe
Q psy2895 233 NIDILTI 239 (293)
Q Consensus 233 ~~~~i~i 239 (293)
|++.+-+
T Consensus 92 Gad~v~v 98 (281)
T cd00408 92 GADGVLV 98 (281)
T ss_pred CCCEEEE
Confidence 6665544
No 301
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=87.64 E-value=16 Score=33.24 Aligned_cols=137 Identities=16% Similarity=0.173 Sum_probs=83.9
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecC----------CCCCCCChhHHHHHHHHHHhhCCCcEEEE-EcCCCcC---cH
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNR----------DDLHDGGSSHFVSCIKHIRKLSTKIKIEI-LIPDFRN---QI 153 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~----------~~l~~~~~~~~~~ll~~i~~~~~~~~i~~-~~~~~~~---~~ 153 (293)
-+++.+.+.++.+.+.|+..|-|.-|-| ..| -.+.+.+.++++++++..+++.|++ +.-|..+ ..
T Consensus 76 sdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~L-l~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~ 154 (323)
T COG0042 76 SDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAAL-LKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILA 154 (323)
T ss_pred CCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhh-cCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccH
Confidence 3578888888888889989888876654 112 2346889999999998764233333 1112111 12
Q ss_pred HHHHHHHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecC--CCHHHHHHHHHHHHh
Q psy2895 154 NHVLKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLG--ENDEEILTVIHDMRN 231 (293)
Q Consensus 154 ~e~l~~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~g--Et~ed~~~~l~~l~~ 231 (293)
.+..+.+.++|++.+.+..-+ ......+ . --++.|..+++..+.+++ +|=| -|.++..++++ .
T Consensus 155 ~~ia~~~~~~g~~~ltVHgRt----r~~~y~~--~-ad~~~I~~vk~~~~~ipv-----i~NGdI~s~~~a~~~l~---~ 219 (323)
T COG0042 155 LEIARILEDAGADALTVHGRT----RAQGYLG--P-ADWDYIKELKEAVPSIPV-----IANGDIKSLEDAKEMLE---Y 219 (323)
T ss_pred HHHHHHHHhcCCCEEEEeccc----HHhcCCC--c-cCHHHHHHHHHhCCCCeE-----EeCCCcCCHHHHHHHHH---h
Confidence 678888889999998875433 1111111 1 234677788877544332 3334 47777666654 4
Q ss_pred CCCCEEEee
Q psy2895 232 HNIDILTIG 240 (293)
Q Consensus 232 l~~~~i~i~ 240 (293)
.|+|-+-+.
T Consensus 220 tg~DgVMig 228 (323)
T COG0042 220 TGADGVMIG 228 (323)
T ss_pred hCCCEEEEc
Confidence 677766553
No 302
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=87.62 E-value=25 Score=33.01 Aligned_cols=131 Identities=15% Similarity=0.156 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeee
Q psy2895 91 EEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNH 170 (293)
Q Consensus 91 eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~ 170 (293)
++-.+.++.+.+.|+.-|++-..++. ...+.++++.+++.+|+..+ ...+..+ .+....+.++|+|.+.+
T Consensus 152 ~~~~~~v~~lv~aGvDvI~iD~a~g~------~~~~~~~v~~ik~~~p~~~v--i~g~V~T--~e~a~~l~~aGaD~I~v 221 (404)
T PRK06843 152 IDTIERVEELVKAHVDILVIDSAHGH------STRIIELVKKIKTKYPNLDL--IAGNIVT--KEAALDLISVGADCLKV 221 (404)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCC------ChhHHHHHHHHHhhCCCCcE--EEEecCC--HHHHHHHHHcCCCEEEE
Confidence 44677888899999999887655531 24688999999998886543 2223333 66777788899999987
Q ss_pred cccc-chHHHhhcCC-CC-CHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 171 NIET-VPRLYKKVRP-GS-DYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 171 ~les-s~~~~~~i~~-~~-~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
+... +--.-+.+.. +. .+..+.++-+.+++. ++++-+ =|=-.+.+|+...+. +|.+.+-+.
T Consensus 222 G~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~--~vpVIA---dGGI~~~~Di~KALa----lGA~aVmvG 285 (404)
T PRK06843 222 GIGPGSICTTRIVAGVGVPQITAICDVYEVCKNT--NICIIA---DGGIRFSGDVVKAIA----AGADSVMIG 285 (404)
T ss_pred CCCCCcCCcceeecCCCCChHHHHHHHHHHHhhc--CCeEEE---eCCCCCHHHHHHHHH----cCCCEEEEc
Confidence 7543 3111111111 11 334444444444444 554322 132467777766654 888887775
No 303
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=87.49 E-value=9.6 Score=34.70 Aligned_cols=111 Identities=17% Similarity=0.234 Sum_probs=63.7
Q ss_pred ChhHHHHHHHHHHhhCCCcEEEEEcCCC-cCcHHHHHHHHHHcCCCeeeeccccchHHHhhcCCCCCH-HHHHHHHHHHH
Q psy2895 122 GSSHFVSCIKHIRKLSTKIKIEILIPDF-RNQINHVLKIFKQALPDVLNHNIETVPRLYKKVRPGSDY-KHSLNLLKNFK 199 (293)
Q Consensus 122 ~~~~~~~ll~~i~~~~~~~~i~~~~~~~-~~~~~e~l~~l~~aG~~~i~~~less~~~~~~i~~~~~~-e~~l~~i~~~~ 199 (293)
+.+.+.+.++.+++.. +..+-+...+. .....+.++.+.++|+|.+.+++-..+. ....+ +.+. +.+.+.++.++
T Consensus 85 g~d~~~~~i~~~~~~~-~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~-~~~~~-g~~~~~~~~eil~~v~ 161 (334)
T PRK07565 85 GPEEYLELIRRAKEAV-DIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPT-DPDIS-GAEVEQRYLDILRAVK 161 (334)
T ss_pred CHHHHHHHHHHHHHhc-CCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCC-CCCCc-cccHHHHHHHHHHHHH
Confidence 3567777777776543 23333322211 1112467777888899999887632111 11112 2233 44678888887
Q ss_pred HhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 200 KLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 200 ~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
+.. +++ +++-++-...++.+..+.+.+.|++.+.+.
T Consensus 162 ~~~-~iP----V~vKl~p~~~~~~~~a~~l~~~G~dgI~~~ 197 (334)
T PRK07565 162 SAV-SIP----VAVKLSPYFSNLANMAKRLDAAGADGLVLF 197 (334)
T ss_pred hcc-CCc----EEEEeCCCchhHHHHHHHHHHcCCCeEEEE
Confidence 752 333 344332233467888888999999988775
No 304
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=87.47 E-value=4.6 Score=37.06 Aligned_cols=81 Identities=10% Similarity=-0.017 Sum_probs=58.0
Q ss_pred HHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHHHHHhC
Q psy2895 155 HVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHDMRNH 232 (293)
Q Consensus 155 e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~~l~~l 232 (293)
+.+...-++|+|.+.+|.+. .-+.+. ...+.+++.+.++.++++ |.++...+=.-+ .+..+.+.+.++.+.++
T Consensus 17 ~~l~~ai~~GADaVY~G~~~~~~R~~a---~nfs~~~l~e~i~~ah~~--gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~ 91 (347)
T COG0826 17 EDLKAAIAAGADAVYIGEKEFGLRRRA---LNFSVEDLAEAVELAHSA--GKKVYVAVNTLLHNDELETLERYLDRLVEL 91 (347)
T ss_pred HHHHHHHHcCCCEEEeCCccccccccc---ccCCHHHHHHHHHHHHHc--CCeEEEEeccccccchhhHHHHHHHHHHHc
Confidence 45666667899999998652 211111 246889999999999999 996443332222 66677789999999999
Q ss_pred CCCEEEee
Q psy2895 233 NIDILTIG 240 (293)
Q Consensus 233 ~~~~i~i~ 240 (293)
|+|-+-+.
T Consensus 92 GvDaviv~ 99 (347)
T COG0826 92 GVDAVIVA 99 (347)
T ss_pred CCCEEEEc
Confidence 99987664
No 305
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=87.28 E-value=12 Score=31.90 Aligned_cols=132 Identities=8% Similarity=0.076 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeee
Q psy2895 91 EEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNH 170 (293)
Q Consensus 91 eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~ 170 (293)
.+..+.++.+.+.|+++++++--+..... ...-.++++.+.+.. +..+.+. .|..+ .+.++.+.++|++.+-+
T Consensus 30 ~dp~~~a~~~~~~g~~~i~i~dl~~~~~~---~~~n~~~~~~i~~~~-~~pv~~~-ggi~~--~~d~~~~~~~G~~~vil 102 (232)
T TIGR03572 30 GDPVNAARIYNAKGADELIVLDIDASKRG---REPLFELISNLAEEC-FMPLTVG-GGIRS--LEDAKKLLSLGADKVSI 102 (232)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCCcccC---CCCCHHHHHHHHHhC-CCCEEEE-CCCCC--HHHHHHHHHcCCCEEEE
Confidence 36677778888899999988755432110 011235566665542 2234332 24444 56677777889999877
Q ss_pred ccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-------------CCCHHHHHHHHHHHHhCCCCEE
Q psy2895 171 NIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-------------GENDEEILTVIHDMRNHNIDIL 237 (293)
Q Consensus 171 ~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-------------gEt~ed~~~~l~~l~~l~~~~i 237 (293)
+-.. ++ +++...+..+...+. .+.++.++--|+ .++..+..+.++.+.+.|++.+
T Consensus 103 g~~~----l~------~~~~~~~~~~~~~~~--~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i 170 (232)
T TIGR03572 103 NTAA----LE------NPDLIEEAARRFGSQ--CVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEI 170 (232)
T ss_pred ChhH----hc------CHHHHHHHHHHcCCc--eEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcCCCEE
Confidence 6322 11 122222222222111 134444443321 1234556778888889999998
Q ss_pred Eeec
Q psy2895 238 TIGQ 241 (293)
Q Consensus 238 ~i~~ 241 (293)
.++.
T Consensus 171 ~i~~ 174 (232)
T TIGR03572 171 LLNS 174 (232)
T ss_pred EEeC
Confidence 8863
No 306
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=87.23 E-value=9.2 Score=34.14 Aligned_cols=77 Identities=9% Similarity=0.027 Sum_probs=46.2
Q ss_pred HHHHHHHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCC
Q psy2895 154 NHVLKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHN 233 (293)
Q Consensus 154 ~e~l~~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~ 233 (293)
...++.+.+.|++.+.+.-.+.+ .+ .-+.+++.+.++.+.+...| ...+|+|.|.+.++-.+..+...++|
T Consensus 29 ~~li~~l~~~Gv~gi~v~GstGE-~~-----~Lt~eEr~~v~~~~~~~~~g---~~pvi~gv~~~t~~ai~~a~~a~~~G 99 (296)
T TIGR03249 29 RENIEWLLGYGLEALFAAGGTGE-FF-----SLTPAEYEQVVEIAVSTAKG---KVPVYTGVGGNTSDAIEIARLAEKAG 99 (296)
T ss_pred HHHHHHHHhcCCCEEEECCCCcC-cc-----cCCHHHHHHHHHHHHHHhCC---CCcEEEecCccHHHHHHHHHHHHHhC
Confidence 55666666777777765322211 11 23677777777766665323 23456666446677777777777777
Q ss_pred CCEEEe
Q psy2895 234 IDILTI 239 (293)
Q Consensus 234 ~~~i~i 239 (293)
++-+-+
T Consensus 100 adav~~ 105 (296)
T TIGR03249 100 ADGYLL 105 (296)
T ss_pred CCEEEE
Confidence 776544
No 307
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=87.09 E-value=10 Score=34.62 Aligned_cols=80 Identities=6% Similarity=0.052 Sum_probs=53.4
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCC-CcEEEEEc--C-CCcCcHHHHHHHHHHc
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLST-KIKIEILI--P-DFRNQINHVLKIFKQA 163 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~-~~~i~~~~--~-~~~~~~~e~l~~l~~a 163 (293)
.+++++.+.++.+.+.|+..|.+.--.. ...++.+.++++.+++..+ ++.|.+.. + ++.- .-.+..+ ++
T Consensus 140 ~~~e~l~~~a~~~~~~Ga~~i~i~DT~G----~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~--ANslaAi-~a 212 (333)
T TIGR03217 140 TPPEKLAEQAKLMESYGADCVYIVDSAG----AMLPDDVRDRVRALKAVLKPETQVGFHAHHNLSLAV--ANSIAAI-EA 212 (333)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEccCCC----CCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCchHH--HHHHHHH-Hh
Confidence 5789999999999999999887752221 1225788899999887653 45555543 2 3321 3355555 58
Q ss_pred CCCeeeecccc
Q psy2895 164 LPDVLNHNIET 174 (293)
Q Consensus 164 G~~~i~~~les 174 (293)
|++++..++.+
T Consensus 213 Ga~~iD~Sl~G 223 (333)
T TIGR03217 213 GATRIDASLRG 223 (333)
T ss_pred CCCEEEeeccc
Confidence 99998876654
No 308
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=87.05 E-value=19 Score=31.02 Aligned_cols=124 Identities=16% Similarity=0.258 Sum_probs=73.0
Q ss_pred ChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhC-CCcEEEEEcCCCcCcHHHHHHHHHHcCCCe
Q psy2895 89 DIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLS-TKIKIEILIPDFRNQINHVLKIFKQALPDV 167 (293)
Q Consensus 89 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~-~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~ 167 (293)
+.-.+.++++.+.+ |++.+++-=-+....|+..+ =.++++.+++.. -.+.++++.. .. ...++.+.++|.+.
T Consensus 13 d~~~l~~el~~l~~-g~d~lH~DiMDG~FVPN~tf--g~~~i~~ir~~t~~~~DvHLMv~--~P--~~~i~~~~~aGad~ 85 (229)
T PRK09722 13 DLLKFKEQIEFLNS-KADYFHIDIMDGHFVPNLTL--SPFFVSQVKKLASKPLDVHLMVT--DP--QDYIDQLADAGADF 85 (229)
T ss_pred CHHHHHHHHHHHHh-CCCEEEEecccCccCCCccc--CHHHHHHHHhcCCCCeEEEEEec--CH--HHHHHHHHHcCCCE
Confidence 34566777787777 89988775443211122111 124556666531 1257777652 11 56889999999999
Q ss_pred eeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 168 LNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 168 i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
+.+..|+.+ .+..+.++.+|++ |+.. ++.+.-+...+.+...+. .+|.+-+.
T Consensus 86 it~H~Ea~~------------~~~~~~i~~Ik~~--G~ka--GlalnP~T~~~~l~~~l~-----~vD~VLvM 137 (229)
T PRK09722 86 ITLHPETIN------------GQAFRLIDEIRRA--GMKV--GLVLNPETPVESIKYYIH-----LLDKITVM 137 (229)
T ss_pred EEECccCCc------------chHHHHHHHHHHc--CCCE--EEEeCCCCCHHHHHHHHH-----hcCEEEEE
Confidence 999888531 1234667788888 8753 555544545555544443 34666554
No 309
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=87.03 E-value=14 Score=32.24 Aligned_cols=128 Identities=11% Similarity=0.174 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcC-CCcCcHHHHHHHHHHcCCCeee
Q psy2895 91 EEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIP-DFRNQINHVLKIFKQALPDVLN 169 (293)
Q Consensus 91 eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~-~~~~~~~e~l~~l~~aG~~~i~ 169 (293)
.++.+.++.+.+.|++.++++.-+...- ....-.++++.+++.. .+.+... |..+ .+.++.+..+|++.+.
T Consensus 30 ~dp~~~a~~~~~~G~~~l~v~Dl~~~~~---~~~~n~~~i~~i~~~~---~~pv~~~GGi~s--~~d~~~~~~~Ga~~vi 101 (254)
T TIGR00735 30 GDPVELAQRYDEEGADELVFLDITASSE---GRTTMIDVVERTAETV---FIPLTVGGGIKS--IEDVDKLLRAGADKVS 101 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCcccc---cChhhHHHHHHHHHhc---CCCEEEECCCCC--HHHHHHHHHcCCCEEE
Confidence 3566777888889999998876553211 1233456777777653 2333332 5555 6777777789999988
Q ss_pred eccccchHHHhhcCCCCCHHHHHHHHHHHHHhCC--CceeeEeEE-----------e----ecCCCHHHHHHHHHHHHhC
Q psy2895 170 HNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYP--NILTKSGIM-----------V----GLGENDEEILTVIHDMRNH 232 (293)
Q Consensus 170 ~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~p--gi~~~~~~i-----------v----G~gEt~ed~~~~l~~l~~l 232 (293)
++-... + ++ +.++.+.+.+| -+.++.++- | |..++..+..+.++.+.+.
T Consensus 102 vgt~~~----~------~p----~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~ 167 (254)
T TIGR00735 102 INTAAV----K------NP----ELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKL 167 (254)
T ss_pred EChhHh----h------Ch----HHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHc
Confidence 874321 0 11 12222333332 233444421 1 1134566778888889999
Q ss_pred CCCEEEee
Q psy2895 233 NIDILTIG 240 (293)
Q Consensus 233 ~~~~i~i~ 240 (293)
|++.+.++
T Consensus 168 G~~~iivt 175 (254)
T TIGR00735 168 GAGEILLT 175 (254)
T ss_pred CCCEEEEe
Confidence 99988885
No 310
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=87.01 E-value=19 Score=31.33 Aligned_cols=67 Identities=16% Similarity=0.187 Sum_probs=39.2
Q ss_pred HHHHHHHCCCcEEEEe-----eecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEc-C---CCcCc------HHHHHHHH
Q psy2895 96 IAYTINKLKLNYVVIT-----SVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILI-P---DFRNQ------INHVLKIF 160 (293)
Q Consensus 96 ~~~~~~~~G~~~i~l~-----gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~-~---~~~~~------~~e~l~~l 160 (293)
.+..+.+.|++.|-|. ||..|++ .+++.+++.. ++.+.++. | +|.=+ ..+.++.+
T Consensus 13 ~a~~A~~~GAdRiELc~~L~~GGlTPS~---------g~i~~~~~~~-~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~~ 82 (248)
T PRK11572 13 CALTAQQAGADRIELCAAPKEGGLTPSL---------GVLKSVRERV-TIPVHPIIRPRGGDFCYSDGEFAAMLEDIATV 82 (248)
T ss_pred HHHHHHHcCCCEEEEccCcCCCCcCCCH---------HHHHHHHHhc-CCCeEEEEecCCCCCCCCHHHHHHHHHHHHHH
Confidence 3445567799988664 3333322 3444444432 35566654 4 44311 25667888
Q ss_pred HHcCCCeeeecc
Q psy2895 161 KQALPDVLNHNI 172 (293)
Q Consensus 161 ~~aG~~~i~~~l 172 (293)
+++|++.+-+|.
T Consensus 83 ~~~GadGvV~G~ 94 (248)
T PRK11572 83 RELGFPGLVTGV 94 (248)
T ss_pred HHcCCCEEEEee
Confidence 889999998765
No 311
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=86.90 E-value=21 Score=31.41 Aligned_cols=80 Identities=14% Similarity=0.110 Sum_probs=55.5
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCC-cEEEEEc-C--CCcCcHHHHHHHHHHc
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTK-IKIEILI-P--DFRNQINHVLKIFKQA 163 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~-~~i~~~~-~--~~~~~~~e~l~~l~~a 163 (293)
.+++.+.+.++.+.+.|+..|.+.--.. ...++.+.++++.+++..+. +.+.+.. + ++.. .-.+..+ ++
T Consensus 135 ~~~~~~~~~~~~~~~~g~~~i~l~DT~G----~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~--AN~laA~-~a 207 (266)
T cd07944 135 YSDEELLELLELVNEIKPDVFYIVDSFG----SMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLAL--ANTLEAI-EL 207 (266)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEecCCC----CCCHHHHHHHHHHHHHhcCCCceEEEEeCCCccHHH--HHHHHHH-Hc
Confidence 5789999999999999999887742211 12357899999999887642 5566544 2 3322 4466666 58
Q ss_pred CCCeeeecccc
Q psy2895 164 LPDVLNHNIET 174 (293)
Q Consensus 164 G~~~i~~~les 174 (293)
|++.+..++.+
T Consensus 208 Ga~~vd~s~~G 218 (266)
T cd07944 208 GVEIIDATVYG 218 (266)
T ss_pred CCCEEEEeccc
Confidence 99998877655
No 312
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=86.87 E-value=8 Score=33.79 Aligned_cols=23 Identities=9% Similarity=-0.055 Sum_probs=12.4
Q ss_pred CChhHHHHHHHHHHHCCCcEEEE
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVI 110 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l 110 (293)
.+++.+.+.++.+.+.|+..|.|
T Consensus 136 ~~~~~~~~~~~~~~~~G~~~i~l 158 (259)
T cd07939 136 ADPDFLIEFAEVAQEAGADRLRF 158 (259)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEe
Confidence 34555555555555555555544
No 313
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=86.83 E-value=17 Score=32.96 Aligned_cols=187 Identities=17% Similarity=0.168 Sum_probs=94.7
Q ss_pred hhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEE-EcCCCcCc---HHHHHHHHHHcCC
Q psy2895 90 IEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEI-LIPDFRNQ---INHVLKIFKQALP 165 (293)
Q Consensus 90 ~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~-~~~~~~~~---~~e~l~~l~~aG~ 165 (293)
.++-.+.++.+.++|++.|+-+-+.+.+-...-...+.++++..++. ++.+-+ ..|.++.. ....++.+.+.|+
T Consensus 15 ~~~~~~Yi~~~~~~Gf~~IFtsl~~~~~~~~~~~~~~~ell~~Ankl--g~~vivDvnPsil~~l~~S~~~l~~f~e~G~ 92 (360)
T COG3589 15 KEKDIAYIDRMHKYGFKRIFTSLLIPEEDAELYFHRFKELLKEANKL--GLRVIVDVNPSILKELNISLDNLSRFQELGV 92 (360)
T ss_pred chhHHHHHHHHHHcCccceeeecccCCchHHHHHHHHHHHHHHHHhc--CcEEEEEcCHHHHhhcCCChHHHHHHHHhhh
Confidence 46667788888999999886433322110001246788888888875 233322 12443221 1556888888888
Q ss_pred Ceeeeccccc-hHH---Hhh-cCCCCCHHHHHHHHHHHHHhCCCc---eeeEeEEee-c-CCCHHHHHHHHHHHHhCCCC
Q psy2895 166 DVLNHNIETV-PRL---YKK-VRPGSDYKHSLNLLKNFKKLYPNI---LTKSGIMVG-L-GENDEEILTVIHDMRNHNID 235 (293)
Q Consensus 166 ~~i~~~less-~~~---~~~-i~~~~~~e~~l~~i~~~~~~~pgi---~~~~~~ivG-~-gEt~ed~~~~l~~l~~l~~~ 235 (293)
+.+.+..-.| +++ -+. |.=.-+....-+-+..+.+..+++ .-+-++-.- . |=+.+.+.+.=+++++.++.
T Consensus 93 ~glRlD~gfS~eei~~ms~~~lkieLN~S~it~~l~~l~~~~an~~nl~~cHNyYPr~yTGLS~e~f~~kn~~fk~~~i~ 172 (360)
T COG3589 93 DGLRLDYGFSGEEIAEMSKNPLKIELNASTITELLDSLLAYKANLENLEGCHNYYPRPYTGLSREHFKRKNEIFKEYNIK 172 (360)
T ss_pred hheeecccCCHHHHHHHhcCCeEEEEchhhhHHHHHHHHHhccchhhhhhcccccCCcccCccHHHHHHHHHHHHhcCCc
Confidence 8876532222 222 222 110011111112222222221122 111222111 1 77999999999999999987
Q ss_pred EEEeecC--C-CCCC------CccccccccChhHHHHHHHHHHHhcccchhcccc
Q psy2895 236 ILTIGQY--L-MPSR------LHLPVHRYLHPKFFEKFKKIAYKLGFKNVLVGSM 281 (293)
Q Consensus 236 ~i~i~~~--~-~p~~------~~~a~~r~~~p~~~~~~~~~~~~~G~~~~~~~~~ 281 (293)
..-+-.- . -|.+ -++-..|.+.|.... +...+.|+..+.+|+-
T Consensus 173 t~AFis~~~~~g~r~~~~~GlpTlE~hR~~~p~~qa---k~l~~~giD~VlIgd~ 224 (360)
T COG3589 173 TAAFISSDGAEGPRGPLYEGLPTLEAHRYVEPFVQA---KDLFKTGIDDVLIGDQ 224 (360)
T ss_pred eEEEEecCCcCCcccccccCccchHHhcCCCHHHHH---HHHHHhCCCeEEecCC
Confidence 5433101 1 0111 234455666664322 2334567777777763
No 314
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=86.75 E-value=3 Score=35.33 Aligned_cols=78 Identities=17% Similarity=0.161 Sum_probs=48.4
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecC-CCCC----CCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHH
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNR-DDLH----DGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFK 161 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~-~~l~----~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~ 161 (293)
..+.++..+.+++..+.|+..|-+.++.. |... ...++++..+++.+++..+++.+.+=| .. .+.++.--
T Consensus 15 ~~~~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT---~~--~~v~~~aL 89 (210)
T PF00809_consen 15 KFSEDEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDT---FN--PEVAEAAL 89 (210)
T ss_dssp HHHHHHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEE---SS--HHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEEC---CC--HHHHHHHH
Confidence 35678888889999999999998877652 1111 123467888888887633456666633 22 45555544
Q ss_pred HcCCCeee
Q psy2895 162 QALPDVLN 169 (293)
Q Consensus 162 ~aG~~~i~ 169 (293)
++|.+.+.
T Consensus 90 ~~g~~~in 97 (210)
T PF00809_consen 90 KAGADIIN 97 (210)
T ss_dssp HHTSSEEE
T ss_pred HcCcceEE
Confidence 45776654
No 315
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=86.67 E-value=14 Score=31.49 Aligned_cols=131 Identities=10% Similarity=0.131 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeee
Q psy2895 91 EEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNH 170 (293)
Q Consensus 91 eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~ 170 (293)
.+..+.++.+.+.|++++++..-+. ... +...-.++++.+.+.. +..+.+- .+..+ .+.++.+.++|++.+-+
T Consensus 28 ~dp~~~a~~~~~~g~~~l~v~dl~~--~~~-g~~~~~~~i~~i~~~~-~~pi~~g-gGI~~--~ed~~~~~~~Ga~~vvl 100 (230)
T TIGR00007 28 DDPVEAAKKWEEEGAERIHVVDLDG--AKE-GGPVNLPVIKKIVRET-GVPVQVG-GGIRS--LEDVEKLLDLGVDRVII 100 (230)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCc--ccc-CCCCcHHHHHHHHHhc-CCCEEEe-CCcCC--HHHHHHHHHcCCCEEEE
Confidence 3667777888889999988854332 111 1111235666666543 2233331 24444 77888888999999876
Q ss_pred ccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEe------ec-CCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 171 NIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMV------GL-GENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 171 ~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~iv------G~-gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
+-.. ++ +.+.+.+..+.+... .+.++.++-- |. ..+..+..+.++.+.+.|++.+.+.
T Consensus 101 gs~~----l~------d~~~~~~~~~~~g~~--~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~ 165 (230)
T TIGR00007 101 GTAA----VE------NPDLVKELLKEYGPE--RIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEGIIYT 165 (230)
T ss_pred ChHH----hh------CHHHHHHHHHHhCCC--cEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEEEE
Confidence 6322 11 233334433333211 2334444332 22 1223455677788888999977664
No 316
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=86.40 E-value=17 Score=31.31 Aligned_cols=142 Identities=15% Similarity=0.227 Sum_probs=78.3
Q ss_pred eeEeccCChhcHHHHHHHHHh-cC---chhhhhhcCC---CCccccccCceeEeeeeCcccC--CCCcCcccCCCCCCCC
Q psy2895 18 IRVKLISNIDNFNKTKNILRA-NN---LVTVCEEASC---PNIGECFGRGVATFMIMGSICT--RRCKFCNISHGRPDPL 88 (293)
Q Consensus 18 ~~~~~~~g~~~~~~~~~l~~~-~~---~~~l~~~a~~---~~~~~~~~~~~~~~~~~t~~C~--~~C~fC~~~~~~~~~~ 88 (293)
++.-++.|..+.+++..++.. +| +++- ...++ .+..++||.+-....+-...=+ ..|.|+.+..+-.. -
T Consensus 75 iPltVGGGI~s~eD~~~ll~aGADKVSINsa-Av~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~-~ 152 (256)
T COG0107 75 IPLTVGGGIRSVEDARKLLRAGADKVSINSA-AVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGRE-D 152 (256)
T ss_pred eeeEecCCcCCHHHHHHHHHcCCCeeeeChh-HhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCc-C
Confidence 334456678999999998853 22 1110 01110 0122357766444333221111 68888887664211 2
Q ss_pred ChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCe
Q psy2895 89 DIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDV 167 (293)
Q Consensus 89 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~ 167 (293)
+--+.++.+++..+.|+-+|+|++-+.+-.. . -+=.++++.+++.. +|-+..++=..+.+..++.+.+..+|.
T Consensus 153 t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk-~--GyDl~l~~~v~~~v---~iPvIASGGaG~~ehf~eaf~~~~adA 225 (256)
T COG0107 153 TGLDAVEWAKEVEELGAGEILLTSMDRDGTK-A--GYDLELTRAVREAV---NIPVIASGGAGKPEHFVEAFTEGKADA 225 (256)
T ss_pred CCcCHHHHHHHHHHcCCceEEEeeecccccc-c--CcCHHHHHHHHHhC---CCCEEecCCCCcHHHHHHHHHhcCccH
Confidence 3445677788888999999999998754321 1 12247778887753 444444321223255677776654554
No 317
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=86.32 E-value=25 Score=33.05 Aligned_cols=141 Identities=13% Similarity=0.154 Sum_probs=82.5
Q ss_pred ChhHHHHHHHHHHHCCCcEEEEeeecCCCC--------CCCChhHHHHHHHHHHhhCCCcEEEE-EcCCCcCcHHHHHHH
Q psy2895 89 DIEEPKKIAYTINKLKLNYVVITSVNRDDL--------HDGGSSHFVSCIKHIRKLSTKIKIEI-LIPDFRNQINHVLKI 159 (293)
Q Consensus 89 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~l--------~~~~~~~~~~ll~~i~~~~~~~~i~~-~~~~~~~~~~e~l~~ 159 (293)
+++++.+.++.+.+.|+..|-|.-+-|... ...+.+.+.++++.+++.. .+.|.+ .+|++. ++.+.++.
T Consensus 111 ~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~-~~Pv~vKl~p~~~-~~~~~a~~ 188 (420)
T PRK08318 111 NEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGS-RLPVIVKLTPNIT-DIREPARA 188 (420)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhcc-CCcEEEEcCCCcc-cHHHHHHH
Confidence 578889999988888988887755443211 0134578899999998753 223333 234432 24678888
Q ss_pred HHHcCCCeeee----------cccc---chHHHhhcC-CCCC----HHHHHHHHHHHHHhCC--CceeeEeEEeec--CC
Q psy2895 160 FKQALPDVLNH----------NIET---VPRLYKKVR-PGSD----YKHSLNLLKNFKKLYP--NILTKSGIMVGL--GE 217 (293)
Q Consensus 160 l~~aG~~~i~~----------~les---s~~~~~~i~-~~~~----~e~~l~~i~~~~~~~p--gi~~~~~~ivG~--gE 217 (293)
+.++|++.+.+ .+++ .+.++..-. .+.+ ..-.++.+..+++..+ +++ |+|. -.
T Consensus 189 ~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ip-----Iig~GGI~ 263 (420)
T PRK08318 189 AKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLP-----ISGIGGIE 263 (420)
T ss_pred HHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCC-----EEeecCcC
Confidence 88999999873 1111 011211111 1222 2224777878877632 333 3455 36
Q ss_pred CHHHHHHHHHHHHhCCCCEEEee
Q psy2895 218 NDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 218 t~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
|.+|..+.+. .|.+.+.+.
T Consensus 264 s~~da~e~i~----aGA~~Vqi~ 282 (420)
T PRK08318 264 TWRDAAEFIL----LGAGTVQVC 282 (420)
T ss_pred CHHHHHHHHH----hCCChheee
Confidence 7777766653 787777664
No 318
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=86.30 E-value=11 Score=33.44 Aligned_cols=108 Identities=8% Similarity=0.125 Sum_probs=68.9
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCC-------CC-CCCChhHHHHHHHHHHhhCCCcEEEEEc--CC------Cc
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRD-------DL-HDGGSSHFVSCIKHIRKLSTKIKIEILI--PD------FR 150 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~-------~l-~~~~~~~~~~ll~~i~~~~~~~~i~~~~--~~------~~ 150 (293)
..+.+...+.++-+++.|+..+.+-.|-.. ++ ...+...+.++++..+++ ++.|.+.. .+ +.
T Consensus 28 g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~K--gVgi~lw~~~~~~~~~~~~~ 105 (273)
T PF10566_consen 28 GATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEK--GVGIWLWYHSETGGNVANLE 105 (273)
T ss_dssp SSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHT--T-EEEEEEECCHTTBHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHc--CCCEEEEEeCCcchhhHhHH
Confidence 478999999999999999999998555310 01 011236799999999998 45555543 22 22
Q ss_pred CcHHHHHHHHHHcCCCeeeecc-cc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCcee
Q psy2895 151 NQINHVLKIFKQALPDVLNHNI-ET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILT 207 (293)
Q Consensus 151 ~~~~e~l~~l~~aG~~~i~~~l-es-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~ 207 (293)
..+++.++.+++.|+..|.++. ++ +.+ ..+.+.++++.+.++ ++-+
T Consensus 106 ~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~---------~v~~y~~i~~~AA~~--~Lmv 153 (273)
T PF10566_consen 106 KQLDEAFKLYAKWGVKGVKIDFMDRDDQE---------MVNWYEDILEDAAEY--KLMV 153 (273)
T ss_dssp CCHHHHHHHHHHCTEEEEEEE--SSTSHH---------HHHHHHHHHHHHHHT--T-EE
T ss_pred HHHHHHHHHHHHcCCCEEeeCcCCCCCHH---------HHHHHHHHHHHHHHc--CcEE
Confidence 3347889999999999988864 33 122 234466777788777 5533
No 319
>KOG2900|consensus
Probab=86.27 E-value=5.5 Score=34.58 Aligned_cols=94 Identities=18% Similarity=0.260 Sum_probs=62.1
Q ss_pred HHHHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeE-Ee-----------ec---------
Q psy2895 157 LKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGI-MV-----------GL--------- 215 (293)
Q Consensus 157 l~~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~-iv-----------G~--------- 215 (293)
.+..|++|-.++.++. .-.+...|+.++.++++.|+.++.. |+.++.++ |+ |+
T Consensus 126 Ak~AK~~GSTRFCmGa----AWRD~~GRk~~fk~IlE~ikevr~M--gmEvCvTLGMv~~qQAkeLKdAGLTAYNHNlDT 199 (380)
T KOG2900|consen 126 AKEAKRNGSTRFCMGA----AWRDMKGRKSAFKRILEMIKEVRDM--GMEVCVTLGMVDQQQAKELKDAGLTAYNHNLDT 199 (380)
T ss_pred HHHHHhcCCceeecch----hhhhhccchhHHHHHHHHHHHHHcC--CceeeeeeccccHHHHHHHHhccceecccCccc
Confidence 3445556888887762 2233344566889999999999988 88766442 21 11
Q ss_pred ----------CCCHHHHHHHHHHHHhCCCC---------------EEEee---cCCCCCCCcccccccc
Q psy2895 216 ----------GENDEEILTVIHDMRNHNID---------------ILTIG---QYLMPSRLHLPVHRYL 256 (293)
Q Consensus 216 ----------gEt~ed~~~~l~~l~~l~~~---------------~i~i~---~~~~p~~~~~a~~r~~ 256 (293)
..|.+|..+++..+++.|+. +|.+- .-++|.|..+|+.+++
T Consensus 200 SREyYskvItTRtYDdRL~Ti~nvr~aGikvCsGGIlGLGE~e~DriGlihtLatmp~HPESvPiN~Lv 268 (380)
T KOG2900|consen 200 SREYYSKVITTRTYDDRLQTIKNVREAGIKVCSGGILGLGESEDDRIGLIHTLATMPPHPESVPINRLV 268 (380)
T ss_pred hhhhhcccceecchHHHHHHHHHHHHhcceecccccccccccccceeeeeeeeccCCCCCcccccceEE
Confidence 24568889999999987753 33221 2356788888888886
No 320
>PLN02433 uroporphyrinogen decarboxylase
Probab=86.19 E-value=15 Score=33.63 Aligned_cols=72 Identities=8% Similarity=0.005 Sum_probs=38.7
Q ss_pred HHHHHHHCCCcEEEEeeecCCCCCC-----CChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeee
Q psy2895 96 IAYTINKLKLNYVVITSVNRDDLHD-----GGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNH 170 (293)
Q Consensus 96 ~~~~~~~~G~~~i~l~gg~~~~l~~-----~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~ 170 (293)
.++...+.|+.-+.+.-....-++. ....++.++++.+++..++..+-++.-|. ...++.+++.|++.+++
T Consensus 184 ~~~~~ieaGa~~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh~cG~----~~~~~~~~~~~~~~i~~ 259 (345)
T PLN02433 184 YVDYQIDAGAQVVQIFDSWAGHLSPVDFEEFSKPYLEKIVDEVKARHPDVPLILYANGS----GGLLERLAGTGVDVIGL 259 (345)
T ss_pred HHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCC----HHHHHHHHhcCCCEEEc
Confidence 3444455798866544211111221 11355677888888764333333332222 24688899999997775
Q ss_pred c
Q psy2895 171 N 171 (293)
Q Consensus 171 ~ 171 (293)
.
T Consensus 260 d 260 (345)
T PLN02433 260 D 260 (345)
T ss_pred C
Confidence 3
No 321
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=86.13 E-value=2.9 Score=35.92 Aligned_cols=103 Identities=18% Similarity=0.296 Sum_probs=65.2
Q ss_pred ChhHHHHHHHHHHhhCCCcEEEEEc-CCCcCcHHHHHHHHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHH
Q psy2895 122 GSSHFVSCIKHIRKLSTKIKIEILI-PDFRNQINHVLKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKK 200 (293)
Q Consensus 122 ~~~~~~~ll~~i~~~~~~~~i~~~~-~~~~~~~~e~l~~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~ 200 (293)
..+.+.++++.+++. ++.++++. |+ .+.++.-++.|.+++-+.-..--+.+..-.....++.+.++.+.+++
T Consensus 108 ~~~~l~~~i~~l~~~--gI~VSLFiDPd-----~~qi~~A~~~GAd~VELhTG~Ya~a~~~~~~~~el~~i~~aa~~a~~ 180 (234)
T cd00003 108 QAEKLKPIIERLKDA--GIRVSLFIDPD-----PEQIEAAKEVGADRVELHTGPYANAYDKAEREAELERIAKAAKLARE 180 (234)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEeCCC-----HHHHHHHHHhCcCEEEEechhhhcCCCchhHHHHHHHHHHHHHHHHH
Confidence 457888999999886 57788876 43 67889989999999876432211111100011246667777788888
Q ss_pred hCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 201 LYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 201 ~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
. |+.+++ |+|=|.+.+..... --++..++|.
T Consensus 181 ~--GL~VnA----GHgLny~Nv~~i~~---ip~i~ElnIG 211 (234)
T cd00003 181 L--GLGVNA----GHGLNYENVKPIAK---IPGIAELNIG 211 (234)
T ss_pred c--CCEEec----CCCCCHHHHHHHHh---CCCCeEEccC
Confidence 8 887654 67777766644432 2245556665
No 322
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=86.11 E-value=23 Score=31.08 Aligned_cols=116 Identities=17% Similarity=0.183 Sum_probs=67.3
Q ss_pred HHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeee-cccc-
Q psy2895 97 AYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNH-NIET- 174 (293)
Q Consensus 97 ~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~-~les- 174 (293)
++++.+.|++.+.+ ||++ .+...++++.+++.+-. .|-+++|... ++.++.+.+..-..+.. +..+
T Consensus 110 ~~~~~~aGvdGvii-----pDLp---~ee~~~~~~~~~~~gl~-~I~lvap~t~---~eri~~i~~~s~gfIY~vs~~Gv 177 (258)
T PRK13111 110 AADAAEAGVDGLII-----PDLP---PEEAEELRAAAKKHGLD-LIFLVAPTTT---DERLKKIASHASGFVYYVSRAGV 177 (258)
T ss_pred HHHHHHcCCcEEEE-----CCCC---HHHHHHHHHHHHHcCCc-EEEEeCCCCC---HHHHHHHHHhCCCcEEEEeCCCC
Confidence 45566778888776 4564 46777778888776322 4555666432 56677666665555543 3322
Q ss_pred chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecC-CCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 175 VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLG-ENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 175 s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~g-Et~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
... . ........+.++.++++ ...-+++|+| .|.+++.+.+. . .|-+-+.
T Consensus 178 TG~-----~-~~~~~~~~~~i~~vk~~-----~~~pv~vGfGI~~~e~v~~~~~----~-ADGviVG 228 (258)
T PRK13111 178 TGA-----R-SADAADLAELVARLKAH-----TDLPVAVGFGISTPEQAAAIAA----V-ADGVIVG 228 (258)
T ss_pred CCc-----c-cCCCccHHHHHHHHHhc-----CCCcEEEEcccCCHHHHHHHHH----h-CCEEEEc
Confidence 110 0 11223455667777765 1345688995 47788777653 3 6666664
No 323
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=86.06 E-value=7.7 Score=34.49 Aligned_cols=48 Identities=8% Similarity=0.068 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHHHHHhCCCCEE
Q psy2895 187 DYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHDMRNHNIDIL 237 (293)
Q Consensus 187 ~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~~l~~l~~~~i 237 (293)
+.+++.+.++.+.+...| ...+|+|. ..+.++..+..+.+++.|++-+
T Consensus 52 t~~Er~~~~~~~~~~~~~---~~~viagv~~~~~~~ai~~a~~a~~~Gad~v 100 (288)
T cd00954 52 SVEERKQIAEIVAEAAKG---KVTLIAHVGSLNLKESQELAKHAEELGYDAI 100 (288)
T ss_pred CHHHHHHHHHHHHHHhCC---CCeEEeccCCCCHHHHHHHHHHHHHcCCCEE
Confidence 445555555544444222 12345555 3445555555555555555544
No 324
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=86.03 E-value=2.9 Score=35.92 Aligned_cols=102 Identities=15% Similarity=0.198 Sum_probs=65.1
Q ss_pred ChhHHHHHHHHHHhhCCCcEEEEEc-CCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHH
Q psy2895 122 GSSHFVSCIKHIRKLSTKIKIEILI-PDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFK 199 (293)
Q Consensus 122 ~~~~~~~ll~~i~~~~~~~~i~~~~-~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~ 199 (293)
..+.+.++++.+++. ++.++++. |+ .+.++.-++.|.+++-+.-.. +....+. .....++.+.++.+.++
T Consensus 108 ~~~~l~~~i~~l~~~--gI~VSLFiDP~-----~~qi~~A~~~GAd~VELhTG~YA~a~~~~-~~~~el~~i~~aa~~A~ 179 (237)
T TIGR00559 108 LKDKLCELVKRFHAA--GIEVSLFIDAD-----KDQISAAAEVGADRIEIHTGPYANAYNKK-EMAEELQRIVKASVHAH 179 (237)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEeCCC-----HHHHHHHHHhCcCEEEEechhhhcCCCch-hHHHHHHHHHHHHHHHH
Confidence 357788899999876 57888876 32 678999999999998764322 1111000 00113566777777788
Q ss_pred HhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCC-CCEEEee
Q psy2895 200 KLYPNILTKSGIMVGLGENDEEILTVIHDMRNHN-IDILTIG 240 (293)
Q Consensus 200 ~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~-~~~i~i~ 240 (293)
+. |+.+++ |+|=|.+.+.... +..+ +..++|.
T Consensus 180 ~l--GL~VnA----GHgLny~Nv~~i~---~~~~~i~EvnIG 212 (237)
T TIGR00559 180 SL--GLKVNA----GHGLNYHNVKYFA---EILPYLDELNIG 212 (237)
T ss_pred Hc--CCEEec----CCCCCHHhHHHHH---hCCCCceEEecC
Confidence 88 886654 6777766654432 3334 5666665
No 325
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=86.01 E-value=7.3 Score=34.95 Aligned_cols=77 Identities=8% Similarity=0.067 Sum_probs=46.8
Q ss_pred HHHHHHHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCC
Q psy2895 154 NHVLKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHN 233 (293)
Q Consensus 154 ~e~l~~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~ 233 (293)
...++.+.+.|++.+.+.--+. +.+ .-+.+++.+.++.+.+..+| ...+|+|.|.+.++..+.++.+.++|
T Consensus 31 ~~li~~l~~~Gv~Gi~~~GstG-E~~-----~Lt~eEr~~~~~~~~~~~~~---~~pvi~gv~~~t~~~i~~~~~a~~~G 101 (303)
T PRK03620 31 REHLEWLAPYGAAALFAAGGTG-EFF-----SLTPDEYSQVVRAAVETTAG---RVPVIAGAGGGTAQAIEYAQAAERAG 101 (303)
T ss_pred HHHHHHHHHcCCCEEEECcCCc-Ccc-----cCCHHHHHHHHHHHHHHhCC---CCcEEEecCCCHHHHHHHHHHHHHhC
Confidence 5566666667777776532111 111 23677777777777665323 23456666446777777777778888
Q ss_pred CCEEEe
Q psy2895 234 IDILTI 239 (293)
Q Consensus 234 ~~~i~i 239 (293)
++.+-+
T Consensus 102 adav~~ 107 (303)
T PRK03620 102 ADGILL 107 (303)
T ss_pred CCEEEE
Confidence 776644
No 326
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=85.80 E-value=18 Score=32.82 Aligned_cols=124 Identities=10% Similarity=0.154 Sum_probs=65.2
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcC-CCcCcHHHHHHHHHHcCC
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIP-DFRNQINHVLKIFKQALP 165 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~-~~~~~~~e~l~~l~~aG~ 165 (293)
..+.+.-++++.++.+.|+.-|.++-.+ ..-.+.+..|++..+ +-+..- -|.- .-.+..+ ++|+
T Consensus 30 T~Dv~atv~QI~~L~~aGceiVRvavp~---------~~~A~al~~I~~~~~---iPlVADIHFd~--~lAl~a~-~~g~ 94 (346)
T TIGR00612 30 TIDIDSTVAQIRALEEAGCDIVRVTVPD---------RESAAAFEAIKEGTN---VPLVADIHFDY--RLAALAM-AKGV 94 (346)
T ss_pred chhHHHHHHHHHHHHHcCCCEEEEcCCC---------HHHHHhHHHHHhCCC---CCEEEeeCCCc--HHHHHHH-Hhcc
Confidence 4567788888888999999987775322 133455666666432 111110 1111 2233333 3566
Q ss_pred CeeeeccccchHHHhhcCCC--CCHHHHHHHHHHHHHhCCCceeeEeEEeec---------C-CCH----HHHHHHHHHH
Q psy2895 166 DVLNHNIETVPRLYKKVRPG--SDYKHSLNLLKNFKKLYPNILTKSGIMVGL---------G-END----EEILTVIHDM 229 (293)
Q Consensus 166 ~~i~~~less~~~~~~i~~~--~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~---------g-Et~----ed~~~~l~~l 229 (293)
+.+.++ |+ .+.+.+.+.++.+++. |+++..++=-|- | .|. +...++++.+
T Consensus 95 dkiRIN------------PGNig~~e~v~~vv~~ak~~--~ipIRIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~l 160 (346)
T TIGR00612 95 AKVRIN------------PGNIGFRERVRDVVEKARDH--GKAMRIGVNHGSLERRLLEKYGDATAEAMVQSALEEAAIL 160 (346)
T ss_pred CeEEEC------------CCCCCCHHHHHHHHHHHHHC--CCCEEEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 665543 22 1345566666677776 666555544441 2 233 2333445566
Q ss_pred HhCCCCEEEe
Q psy2895 230 RNHNIDILTI 239 (293)
Q Consensus 230 ~~l~~~~i~i 239 (293)
++++++.+-+
T Consensus 161 e~~~F~divi 170 (346)
T TIGR00612 161 EKLGFRNVVL 170 (346)
T ss_pred HHCCCCcEEE
Confidence 6666665444
No 327
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=85.46 E-value=11 Score=32.00 Aligned_cols=85 Identities=19% Similarity=0.288 Sum_probs=54.2
Q ss_pred HHHHHHHHHcCCCeeeecccc-chHHHhh-cCC--CCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHH
Q psy2895 154 NHVLKIFKQALPDVLNHNIET-VPRLYKK-VRP--GSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDM 229 (293)
Q Consensus 154 ~e~l~~l~~aG~~~i~~~les-s~~~~~~-i~~--~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l 229 (293)
.+..+.++++|+|.+.+++-. .....+. ... ....+...+.++.+++..+ +.+...+-.|..+. ++..+.++.+
T Consensus 70 ~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~-~~v~vk~r~~~~~~-~~~~~~~~~l 147 (231)
T cd02801 70 AEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVP-IPVTVKIRLGWDDE-EETLELAKAL 147 (231)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcC-CCEEEEEeeccCCc-hHHHHHHHHH
Confidence 456777888899999876533 2222211 110 1256777888888887643 44544444443222 5788888999
Q ss_pred HhCCCCEEEee
Q psy2895 230 RNHNIDILTIG 240 (293)
Q Consensus 230 ~~l~~~~i~i~ 240 (293)
.+.|++.+.++
T Consensus 148 ~~~Gvd~i~v~ 158 (231)
T cd02801 148 EDAGASALTVH 158 (231)
T ss_pred HHhCCCEEEEC
Confidence 99999999876
No 328
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=85.46 E-value=29 Score=32.32 Aligned_cols=138 Identities=16% Similarity=0.164 Sum_probs=0.0
Q ss_pred CCCCChhHHHHHHHHHH-------HCCCcEEEEeeec--------------------CCCCCCCChhHHHHHHHHHHhhC
Q psy2895 85 PDPLDIEEPKKIAYTIN-------KLKLNYVVITSVN--------------------RDDLHDGGSSHFVSCIKHIRKLS 137 (293)
Q Consensus 85 ~~~~~~eei~~~~~~~~-------~~G~~~i~l~gg~--------------------~~~l~~~~~~~~~~ll~~i~~~~ 137 (293)
++.+|.+||.+.+++.. +.|+..|-|.+.+ ..++..+ ..-+.++++.|++..
T Consensus 137 p~~mt~~eI~~ii~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR-~rf~~eii~~vr~~~ 215 (382)
T cd02931 137 CRELTTEEVETFVGKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENR-LRFAIEIVEEIKARC 215 (382)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHH-hHHHHHHHHHHHHhc
Q ss_pred CC---cEEEEEcCCCc--------------------CcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHH
Q psy2895 138 TK---IKIEILIPDFR--------------------NQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLN 193 (293)
Q Consensus 138 ~~---~~i~~~~~~~~--------------------~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~ 193 (293)
+. +.+++...+.. .+..+.++.|.++|+|.++++.-+ ....+..-........+++
T Consensus 216 g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~ 295 (382)
T cd02931 216 GEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLP 295 (382)
T ss_pred CCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHH
Q ss_pred HHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHH
Q psy2895 194 LLKNFKKLYPNILTKSGIMVGLGENDEEILTVIH 227 (293)
Q Consensus 194 ~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~ 227 (293)
.++.+++.. ++++ +.+|--.|.++..+.++
T Consensus 296 ~~~~ik~~~-~~pv---i~~G~i~~~~~~~~~l~ 325 (382)
T cd02931 296 YCKALKEVV-DVPV---IMAGRMEDPELASEAIN 325 (382)
T ss_pred HHHHHHHHC-CCCE---EEeCCCCCHHHHHHHHH
No 329
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=85.46 E-value=8.5 Score=34.12 Aligned_cols=77 Identities=9% Similarity=0.062 Sum_probs=42.8
Q ss_pred HHHHHHHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHHHHHhC
Q psy2895 154 NHVLKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHDMRNH 232 (293)
Q Consensus 154 ~e~l~~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~~l~~l 232 (293)
...++.+.++|++.+.+.-.+. +.+ .-+.+++.+.++.+.+...| ...+++|. ..+.++..+..+..++.
T Consensus 22 ~~~i~~l~~~Gv~Gi~~~GstG-E~~-----~Ls~~Er~~~~~~~~~~~~~---~~~vi~gv~~~s~~~~i~~a~~a~~~ 92 (285)
T TIGR00674 22 EKLIDFQIENGTDAIVVVGTTG-ESP-----TLSHEEHKKVIEFVVDLVNG---RVPVIAGTGSNATEEAISLTKFAEDV 92 (285)
T ss_pred HHHHHHHHHcCCCEEEECccCc-ccc-----cCCHHHHHHHHHHHHHHhCC---CCeEEEeCCCccHHHHHHHHHHHHHc
Confidence 4455556666777765432111 111 23566666666666654222 23456666 45666667777777777
Q ss_pred CCCEEEe
Q psy2895 233 NIDILTI 239 (293)
Q Consensus 233 ~~~~i~i 239 (293)
|++.+.+
T Consensus 93 Gad~v~v 99 (285)
T TIGR00674 93 GADGFLV 99 (285)
T ss_pred CCCEEEE
Confidence 7776544
No 330
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=85.28 E-value=5.2 Score=32.71 Aligned_cols=65 Identities=12% Similarity=0.207 Sum_probs=44.1
Q ss_pred HHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeeec
Q psy2895 95 KIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNHN 171 (293)
Q Consensus 95 ~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~ 171 (293)
++++++.+.|+..|.|--. +.+.+.++++.++...+.+.+.++- |+. .+.+..+.+.|+|.+.++
T Consensus 91 ee~~ea~~~g~d~I~lD~~--------~~~~~~~~v~~l~~~~~~v~ie~SG-GI~---~~ni~~ya~~gvD~isvg 155 (169)
T PF01729_consen 91 EEAEEALEAGADIIMLDNM--------SPEDLKEAVEELRELNPRVKIEASG-GIT---LENIAEYAKTGVDVISVG 155 (169)
T ss_dssp HHHHHHHHTT-SEEEEES---------CHHHHHHHHHHHHHHTTTSEEEEES-SSS---TTTHHHHHHTT-SEEEEC
T ss_pred HHHHHHHHhCCCEEEecCc--------CHHHHHHHHHHHhhcCCcEEEEEEC-CCC---HHHHHHHHhcCCCEEEcC
Confidence 4556667789998887422 2478899999888887765555532 333 456888889999999876
No 331
>PRK15452 putative protease; Provisional
Probab=85.25 E-value=6.4 Score=37.43 Aligned_cols=81 Identities=7% Similarity=-0.076 Sum_probs=57.3
Q ss_pred HHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEe--EEeecCCCHHHHHHHHHHHH
Q psy2895 154 NHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSG--IMVGLGENDEEILTVIHDMR 230 (293)
Q Consensus 154 ~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~--~ivG~gEt~ed~~~~l~~l~ 230 (293)
.+.++..-++|+|.|.++.+. +-+.. ....+.+++.+.++.+++. |.++... .++. .+..+.+.+.++.+.
T Consensus 13 ~e~l~aAi~~GADaVY~G~~~~~~R~~---~~~f~~edl~eav~~ah~~--g~kvyvt~n~i~~-e~el~~~~~~l~~l~ 86 (443)
T PRK15452 13 LKNMRYAFAYGADAVYAGQPRYSLRVR---NNEFNHENLALGINEAHAL--GKKFYVVVNIAPH-NAKLKTFIRDLEPVI 86 (443)
T ss_pred HHHHHHHHHCCCCEEEECCCccchhhh---ccCCCHHHHHHHHHHHHHc--CCEEEEEecCcCC-HHHHHHHHHHHHHHH
Confidence 556777778999999999876 33322 1355789999999999999 9865433 2221 334556677777788
Q ss_pred hCCCCEEEee
Q psy2895 231 NHNIDILTIG 240 (293)
Q Consensus 231 ~l~~~~i~i~ 240 (293)
++++|-+-+.
T Consensus 87 ~~gvDgvIV~ 96 (443)
T PRK15452 87 AMKPDALIMS 96 (443)
T ss_pred hCCCCEEEEc
Confidence 8999977664
No 332
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=85.11 E-value=5.2 Score=36.85 Aligned_cols=143 Identities=15% Similarity=0.173 Sum_probs=71.5
Q ss_pred ChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEE-EcCCCcCcH---HHHHHHHHHcC
Q psy2895 89 DIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEI-LIPDFRNQI---NHVLKIFKQAL 164 (293)
Q Consensus 89 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~-~~~~~~~~~---~e~l~~l~~aG 164 (293)
+.++..+.++.+.+.|++.|+.+-..+.+-...-.+.+.++++..++. ++.+-+ .+|..+..+ .+.++.+++.|
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~--~~~v~~Disp~~l~~lg~~~~dl~~~~~lG 89 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKEL--GMEVIADISPKVLKKLGISYDDLSFFKELG 89 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHC--T-EEEEEE-CCHHHTTT-BTTBTHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHC--CCEEEEECCHHHHHHcCCCHHHHHHHHHcC
Confidence 678899999999999999886443332110111246777888888876 344444 234322110 23477888889
Q ss_pred CCeeee--ccccc--hHHHhh-cC----CCCCHHHHHHHHHHHHHhCC---CceeeEeEEee--cCCCHHHHHHHHHHHH
Q psy2895 165 PDVLNH--NIETV--PRLYKK-VR----PGSDYKHSLNLLKNFKKLYP---NILTKSGIMVG--LGENDEEILTVIHDMR 230 (293)
Q Consensus 165 ~~~i~~--~less--~~~~~~-i~----~~~~~e~~l~~i~~~~~~~p---gi~~~~~~ivG--~gEt~ed~~~~l~~l~ 230 (293)
++.+-+ ++... -++-+. |. -+.-.++.++ .+.+.-+ .+..+-++-.= -|=+.+.+.+.-++++
T Consensus 90 i~~lRlD~Gf~~~~ia~ls~ng~~I~LNASti~~~~l~---~L~~~~~~~~~i~a~HNfYPr~~TGLs~~~f~~~n~~~k 166 (357)
T PF05913_consen 90 IDGLRLDYGFSGEEIAKLSKNGIKIELNASTITEEELD---ELIKYGANFSNIIACHNFYPRPYTGLSEEFFIEKNQLLK 166 (357)
T ss_dssp -SEEEESSS-SCHHHHHHTTT-SEEEEETTT--CCHHH---HHCCTT--GGGEEEE---B-STT-SB-HHHHHHHHHHHH
T ss_pred CCEEEECCCCCHHHHHHHHhCCCEEEEECCCCChHHHH---HHHHhcCCHHHeEEEecccCCCCCCCCHHHHHHHHHHHH
Confidence 998876 33321 222222 11 1110233333 3333311 12222222221 1678899999999999
Q ss_pred hCCCCE
Q psy2895 231 NHNIDI 236 (293)
Q Consensus 231 ~l~~~~ 236 (293)
+.|+..
T Consensus 167 ~~gi~~ 172 (357)
T PF05913_consen 167 EYGIKT 172 (357)
T ss_dssp HTT-EE
T ss_pred HCCCcE
Confidence 999754
No 333
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=84.90 E-value=4 Score=35.12 Aligned_cols=100 Identities=15% Similarity=0.232 Sum_probs=66.1
Q ss_pred ChhHHHHHHHHHHhhCCCcEEEEEc-CCCcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHH
Q psy2895 122 GSSHFVSCIKHIRKLSTKIKIEILI-PDFRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFK 199 (293)
Q Consensus 122 ~~~~~~~ll~~i~~~~~~~~i~~~~-~~~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~ 199 (293)
..+.+.++++.+++. +++++++. |+ .+.++.-++.|.+++-+.-.. ++. +.. .....++.+..+.+.++
T Consensus 111 ~~~~l~~~i~~L~~~--gIrVSLFidP~-----~~qi~~A~~~GAd~VELhTG~yA~a-~~~-~~~~el~~~~~aa~~a~ 181 (239)
T PRK05265 111 QFDKLKPAIARLKDA--GIRVSLFIDPD-----PEQIEAAAEVGADRIELHTGPYADA-KTE-AEAAELERIAKAAKLAA 181 (239)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEeCCC-----HHHHHHHHHhCcCEEEEechhhhcC-CCc-chHHHHHHHHHHHHHHH
Confidence 457888899999886 57888876 32 678899999999998764322 121 111 11224667777778888
Q ss_pred HhCCCceeeEeEEeecCCCHHHHHHHHHHHHhC-CCCEEEee
Q psy2895 200 KLYPNILTKSGIMVGLGENDEEILTVIHDMRNH-NIDILTIG 240 (293)
Q Consensus 200 ~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l-~~~~i~i~ 240 (293)
+. |+.++ .|+|=+.+.+... ..+ ++..++|.
T Consensus 182 ~l--GL~Vn----AGHgLny~Nv~~i----~~ip~i~EvnIG 213 (239)
T PRK05265 182 SL--GLGVN----AGHGLNYHNVKPI----AAIPGIEELNIG 213 (239)
T ss_pred Hc--CCEEe----cCCCCCHHhHHHH----hhCCCCeEEccC
Confidence 88 88665 4677777776552 333 45666665
No 334
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=84.84 E-value=5.3 Score=35.15 Aligned_cols=172 Identities=12% Similarity=0.124 Sum_probs=74.5
Q ss_pred ChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCC-cEEEEEcCCCc-----CcHHHHHHHHHH
Q psy2895 89 DIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTK-IKIEILIPDFR-----NQINHVLKIFKQ 162 (293)
Q Consensus 89 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~-~~i~~~~~~~~-----~~~~e~l~~l~~ 162 (293)
....+.+...++.+.|+++|+++.-.- ++. ..+.++.+.+++.... ..+.+..|=+. +. .+.++.+.+
T Consensus 56 ~i~~~~eaL~~L~~~G~~~V~VQplhi--ipG---~Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~-~~D~~~va~ 129 (262)
T PF06180_consen 56 KIDSPEEALAKLADEGYTEVVVQPLHI--IPG---EEYEKLRATVEAYKHDFKKIVLGRPLLYTMGQENS-PEDYEAVAE 129 (262)
T ss_dssp ----HHHHHHHHHHCT--EEEEEE--S--CSS---HHHHHHHHHHHHHCCCSSEEEEE--SCSS-----S-HHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCCEEEEeecce--eCc---HhHHHHHHHHHHhhccCCeEEecccccccccccCC-hHHHHHHHH
Confidence 344455555778889999999997764 343 3455555555443222 26777666222 11 333333333
Q ss_pred cCCCeeeeccccchHHHhhcCC--CCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 163 ALPDVLNHNIETVPRLYKKVRP--GSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 163 aG~~~i~~~less~~~~~~i~~--~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
+-.+.+.-. ..++..=.|.. .|........++..-+.. |. .++.+|.-|..-++.+.+..+++-|+..+.+.
T Consensus 130 aL~~~~~~~--~~~~a~vlmGHGt~h~an~~Y~~l~~~l~~~-~~---~~v~vgtvEG~P~~~~vi~~L~~~g~k~V~L~ 203 (262)
T PF06180_consen 130 ALAEEFPKK--RKDEAVVLMGHGTPHPANAAYSALQAMLKKH-GY---PNVFVGTVEGYPSLEDVIARLKKKGIKKVHLI 203 (262)
T ss_dssp HHHCCS-TT---TTEEEEEEE---SCHHHHHHHHHHHHHHCC-T----TTEEEEETTSSSBHHHHHHHHHHHT-SEEEEE
T ss_pred HHHHhcccc--CCCCEEEEEeCCCCCCccHHHHHHHHHHHhC-CC---CeEEEEEeCCCCCHHHHHHHHHhcCCCeEEEE
Confidence 211111100 01111111321 233333445554443331 32 23455552323347778888888999998888
Q ss_pred cCCCCCCCccccccccChhHHHHHHHHHHHhccc
Q psy2895 241 QYLMPSRLHLPVHRYLHPKFFEKFKKIAYKLGFK 274 (293)
Q Consensus 241 ~~~~p~~~~~a~~r~~~p~~~~~~~~~~~~~G~~ 274 (293)
|++. ..+-++...+.. ++-+.++......|+.
T Consensus 204 PlMl-VAGdHa~nDmaG-de~dSWks~L~~~G~~ 235 (262)
T PF06180_consen 204 PLML-VAGDHAKNDMAG-DEEDSWKSRLEAAGFE 235 (262)
T ss_dssp EESS-S--HHHHCCCCS-SSTTSHHHHHHHTT-E
T ss_pred eccc-ccchhhhhhhcC-CCcchHHHHHHHCCCE
Confidence 6653 334444444333 2223344444555664
No 335
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=84.51 E-value=31 Score=31.24 Aligned_cols=141 Identities=14% Similarity=0.167 Sum_probs=82.8
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCC---------CCCChhHHHHHHHHHHhhCC-CcEEEEEcCCCc-----Cc
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDL---------HDGGSSHFVSCIKHIRKLST-KIKIEILIPDFR-----NQ 152 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l---------~~~~~~~~~~ll~~i~~~~~-~~~i~~~~~~~~-----~~ 152 (293)
-+++++.+.++.+.+.|++.|-|..|-|..- .-.+.+.+.++++.+++..+ .+.+++-. ++. .+
T Consensus 64 ~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~-g~~~~~~~~~ 142 (318)
T TIGR00742 64 SDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRI-GIDPLDSYEF 142 (318)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEec-CCCCcchHHH
Confidence 4689999988888888999888877764110 01345778899999987531 13344322 211 11
Q ss_pred HHHHHHHHHHcCCCeeeeccccchHHHhhcCC----CCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHH
Q psy2895 153 INHVLKIFKQALPDVLNHNIETVPRLYKKVRP----GSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHD 228 (293)
Q Consensus 153 ~~e~l~~l~~aG~~~i~~~less~~~~~~i~~----~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~ 228 (293)
..+.++.+.++|++.+.+..-+. ..+.+.+ ....-+ ++.+..+++..|.+++ +..|=-.|.+|..+.+.
T Consensus 143 ~~~~~~~l~~~G~~~itvHgRt~--~~qg~sg~~~~~~~~~~-~~~i~~vk~~~~~ipV---i~NGdI~s~~da~~~l~- 215 (318)
T TIGR00742 143 LCDFVEIVSGKGCQNFIVHARKA--WLSGLSPKENREIPPLR-YERVYQLKKDFPHLTI---EINGGIKNSEQIKQHLS- 215 (318)
T ss_pred HHHHHHHHHHcCCCEEEEeCCch--hhcCCCccccccCCchh-HHHHHHHHHhCCCCcE---EEECCcCCHHHHHHHHh-
Confidence 24567888889999987643221 0111111 111112 3556677776555553 12333578888888762
Q ss_pred HHhCCCCEEEee
Q psy2895 229 MRNHNIDILTIG 240 (293)
Q Consensus 229 l~~l~~~~i~i~ 240 (293)
+++.+-+.
T Consensus 216 ----g~dgVMig 223 (318)
T TIGR00742 216 ----HVDGVMVG 223 (318)
T ss_pred ----CCCEEEEC
Confidence 78877664
No 336
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=84.29 E-value=6.4 Score=33.82 Aligned_cols=83 Identities=13% Similarity=0.153 Sum_probs=59.7
Q ss_pred HHHHHHHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEe-------ec-CCCH-----H
Q psy2895 154 NHVLKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMV-------GL-GEND-----E 220 (293)
Q Consensus 154 ~e~l~~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~iv-------G~-gEt~-----e 220 (293)
.|.|..-|++|.|.+.++++-+++-+.++ ..+.++++..++.+.+. |+.+.+.-+- |- .++. +
T Consensus 21 ~erl~~AK~~GFDFvEmSvDEsDeRLaRL--DWs~~er~~l~~ai~et--gv~ipSmClSaHRRfPfGS~D~~~r~~ale 96 (287)
T COG3623 21 LERLALAKELGFDFVEMSVDESDERLARL--DWSKEERLALVNAIQET--GVRIPSMCLSAHRRFPFGSKDEATRQQALE 96 (287)
T ss_pred HHHHHHHHHcCCCeEEEeccchHHHHHhc--CCCHHHHHHHHHHHHHh--CCCccchhhhhhccCCCCCCCHHHHHHHHH
Confidence 78899999999999999997766555444 56788999999999999 8876554333 33 2222 2
Q ss_pred HHHHHHHHHHhCCCCEEEee
Q psy2895 221 EILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 221 d~~~~l~~l~~l~~~~i~i~ 240 (293)
=+...+.+.+++|+..|.+.
T Consensus 97 iM~KaI~LA~dLGIRtIQLA 116 (287)
T COG3623 97 IMEKAIQLAQDLGIRTIQLA 116 (287)
T ss_pred HHHHHHHHHHHhCceeEeec
Confidence 23444566688999988774
No 337
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=83.97 E-value=8.3 Score=34.22 Aligned_cols=77 Identities=14% Similarity=0.195 Sum_probs=53.2
Q ss_pred HHHHHHHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHHHHHhC
Q psy2895 154 NHVLKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHDMRNH 232 (293)
Q Consensus 154 ~e~l~~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~~l~~l 232 (293)
++.++.+.++|++.+.+.--+. +.+ .-+.+++.+.++.+.+..+| ...+|+|. +.+.++..+.++.++++
T Consensus 25 ~~~i~~l~~~Gv~gl~~~GstG-E~~-----~Lt~~Er~~l~~~~~~~~~~---~~~vi~gv~~~st~~~i~~a~~a~~~ 95 (289)
T PF00701_consen 25 KRLIDFLIEAGVDGLVVLGSTG-EFY-----SLTDEERKELLEIVVEAAAG---RVPVIAGVGANSTEEAIELARHAQDA 95 (289)
T ss_dssp HHHHHHHHHTTSSEEEESSTTT-TGG-----GS-HHHHHHHHHHHHHHHTT---SSEEEEEEESSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCEEEECCCCc-ccc-----cCCHHHHHHHHHHHHHHccC---ceEEEecCcchhHHHHHHHHHHHhhc
Confidence 6677777788999887643222 221 23778888888887775332 23578888 77889999999999999
Q ss_pred CCCEEEe
Q psy2895 233 NIDILTI 239 (293)
Q Consensus 233 ~~~~i~i 239 (293)
|++-+-+
T Consensus 96 Gad~v~v 102 (289)
T PF00701_consen 96 GADAVLV 102 (289)
T ss_dssp T-SEEEE
T ss_pred CceEEEE
Confidence 9987655
No 338
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=83.87 E-value=11 Score=33.90 Aligned_cols=48 Identities=8% Similarity=0.156 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHHHHHhCCCCEE
Q psy2895 187 DYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHDMRNHNIDIL 237 (293)
Q Consensus 187 ~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~~l~~l~~~~i 237 (293)
+.+++.+.++.+.+...| ...+|+|. ..+.++..+..+...+.|++-+
T Consensus 59 t~eEr~~v~~~~~~~~~g---rvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~v 107 (309)
T cd00952 59 TWEEKQAFVATVVETVAG---RVPVFVGATTLNTRDTIARTRALLDLGADGT 107 (309)
T ss_pred CHHHHHHHHHHHHHHhCC---CCCEEEEeccCCHHHHHHHHHHHHHhCCCEE
Confidence 445555555544443212 12344555 3444555555555555555543
No 339
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=83.75 E-value=11 Score=33.99 Aligned_cols=86 Identities=16% Similarity=0.172 Sum_probs=55.8
Q ss_pred HHHHHHHHHcCCCeeeecccc-chHHHhhcCC---CCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHH
Q psy2895 154 NHVLKIFKQALPDVLNHNIET-VPRLYKKVRP---GSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDM 229 (293)
Q Consensus 154 ~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~---~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l 229 (293)
.+.++.+.++|+|.|.++.-. ....-+.-.. ..+++...++++.+++.. ++++.+-+-.|..++..+..+.+..+
T Consensus 78 ~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~-~~pv~vKir~g~~~~~~~~~~~a~~l 156 (319)
T TIGR00737 78 AEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAV-DIPVTVKIRIGWDDAHINAVEAARIA 156 (319)
T ss_pred HHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhc-CCCEEEEEEcccCCCcchHHHHHHHH
Confidence 456667777899998887643 2222221111 124577778888887753 56666665556644555677888888
Q ss_pred HhCCCCEEEee
Q psy2895 230 RNHNIDILTIG 240 (293)
Q Consensus 230 ~~l~~~~i~i~ 240 (293)
.+.|++.+.++
T Consensus 157 ~~~G~d~i~vh 167 (319)
T TIGR00737 157 EDAGAQAVTLH 167 (319)
T ss_pred HHhCCCEEEEE
Confidence 99999998886
No 340
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=83.60 E-value=28 Score=29.99 Aligned_cols=136 Identities=14% Similarity=0.130 Sum_probs=0.0
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEc-CCC------cCcHHHHHHHH
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILI-PDF------RNQINHVLKIF 160 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~-~~~------~~~~~e~l~~l 160 (293)
+.++.+...+......|+.+|-+.--...+. ..-.+.+..+.+.++...++..+-... .|. .. .+..+..
T Consensus 64 ~~p~~~~~aa~~~a~~GvdyvKvGl~g~~~~-~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p--~~l~~~a 140 (235)
T PF04476_consen 64 MKPGTASLAALGAAATGVDYVKVGLFGCKDY-DEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISP--LDLPEIA 140 (235)
T ss_pred CCchHHHHHHHHHHhcCCCEEEEecCCCCCH-HHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCH--HHHHHHH
Q ss_pred HHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHHHHHhCCCCEEEe
Q psy2895 161 KQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHDMRNHNIDILTI 239 (293)
Q Consensus 161 ~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~~l~~l~~~~i~i 239 (293)
+++|++. +-++|..+--..+-...+.++.-+.++.+|++ +++.|+ |.= -.+++..|+.+++|++.+
T Consensus 141 ~~aG~~g--vMlDTa~Kdg~~L~d~~~~~~L~~Fv~~ar~~--------gL~~aLAGSL---~~~di~~L~~l~pD~lGf 207 (235)
T PF04476_consen 141 AEAGFDG--VMLDTADKDGGSLFDHLSEEELAEFVAQARAH--------GLMCALAGSL---RFEDIPRLKRLGPDILGF 207 (235)
T ss_pred HHcCCCE--EEEecccCCCCchhhcCCHHHHHHHHHHHHHc--------cchhhccccC---ChhHHHHHHhcCCCEEEe
No 341
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=83.58 E-value=9.9 Score=32.14 Aligned_cols=75 Identities=12% Similarity=0.104 Sum_probs=52.4
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcC-CCcCcHHHHHHHHHHcCC
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIP-DFRNQINHVLKIFKQALP 165 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~-~~~~~~~e~l~~l~~aG~ 165 (293)
.+++|++...+..+...|.+.+++..++.... ..+ .++++.+++.. .+.+... |..+ .|.++.+.++|.
T Consensus 130 ~~~~e~~~~~a~aa~~~G~~~i~Le~~sGa~~-~v~----~e~i~~Vk~~~---~~Pv~vGGGIrs--~e~a~~l~~~GA 199 (205)
T TIGR01769 130 YNKPEIAAAYCLAAKYFGMKWVYLEAGSGASY-PVN----PETISLVKKAS---GIPLIVGGGIRS--PEIAYEIVLAGA 199 (205)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCC-CCC----HHHHHHHHHhh---CCCEEEeCCCCC--HHHHHHHHHcCC
Confidence 47899999999888888999999976654211 111 46777777753 2334333 5555 888999988899
Q ss_pred Ceeeec
Q psy2895 166 DVLNHN 171 (293)
Q Consensus 166 ~~i~~~ 171 (293)
|.+-+|
T Consensus 200 D~VVVG 205 (205)
T TIGR01769 200 DAIVTG 205 (205)
T ss_pred CEEEeC
Confidence 987653
No 342
>PRK08444 hypothetical protein; Provisional
Probab=83.53 E-value=10 Score=34.94 Aligned_cols=108 Identities=18% Similarity=0.220 Sum_probs=61.0
Q ss_pred HHHHHHHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEe----E-----EeecCCCHHHHHH
Q psy2895 154 NHVLKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSG----I-----MVGLGENDEEILT 224 (293)
Q Consensus 154 ~e~l~~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~----~-----ivG~gEt~ed~~~ 224 (293)
.+.++..++.|++.+.+- +. .++...++.+.+.++.+++.+|++.+++- + .. |-+ ..+
T Consensus 86 ~~~a~~a~~~G~~ei~iv--~G------~~p~~~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~--g~~---~~e 152 (353)
T PRK08444 86 LEIVKNSVKRGIKEVHIV--SA------HNPNYGYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKF--GKS---YEE 152 (353)
T ss_pred HHHHHHHHHCCCCEEEEe--cc------CCCCCCHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHc--CCC---HHH
Confidence 344555566788887752 21 23344788899999999998888876541 0 11 233 345
Q ss_pred HHHHHHhCCCCEEEee--cCCCCCC-CccccccccChhHHHHHHHHHHHhcccc
Q psy2895 225 VIHDMRNHNIDILTIG--QYLMPSR-LHLPVHRYLHPKFFEKFKKIAYKLGFKN 275 (293)
Q Consensus 225 ~l~~l~~l~~~~i~i~--~~~~p~~-~~~a~~r~~~p~~~~~~~~~~~~~G~~~ 275 (293)
.+..+++.|++.++-. .++.|.- ..+.-.. ...+.+..+.+.++++|++.
T Consensus 153 ~l~~LkeAGl~~~~g~~aEi~~~~vr~~I~p~k-~~~~~~~~i~~~a~~~Gi~~ 205 (353)
T PRK08444 153 VLEDMLEYGVDSMPGGGAEIFDEEVRKKICKGK-VSSERWLEIHKYWHKKGKMS 205 (353)
T ss_pred HHHHHHHhCcccCCCCCchhcCHHHHhhhCCCC-CCHHHHHHHHHHHHHcCCCc
Confidence 6777888898865431 1111100 0000000 12245667766777777764
No 343
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=83.51 E-value=33 Score=30.69 Aligned_cols=141 Identities=10% Similarity=0.143 Sum_probs=83.4
Q ss_pred ChhHHHHHHHHHHHCCCcEEEEeeecCCCC--------CCCChhHHHHHHHHHHhhC-CCcEEEEEcCCCcCcHHHHHHH
Q psy2895 89 DIEEPKKIAYTINKLKLNYVVITSVNRDDL--------HDGGSSHFVSCIKHIRKLS-TKIKIEILIPDFRNQINHVLKI 159 (293)
Q Consensus 89 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~l--------~~~~~~~~~~ll~~i~~~~-~~~~i~~~~~~~~~~~~e~l~~ 159 (293)
+++++.+.++.+.+.|+..|-|.-+-|... ...+.+.+.++++.+++.. ..+.+++ +|++. ++.+.++.
T Consensus 111 ~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl-~~~~~-~~~~~a~~ 188 (299)
T cd02940 111 NKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKL-TPNIT-DIREIARA 188 (299)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEEC-CCCch-hHHHHHHH
Confidence 778999999988878888777755443210 0123577889999998753 1234443 34432 33678888
Q ss_pred HHHcCCCeeee--------ccc--cchH---HHhhc-CCCC----CHHHHHHHHHHHHHhCC-CceeeEeEEeec--CCC
Q psy2895 160 FKQALPDVLNH--------NIE--TVPR---LYKKV-RPGS----DYKHSLNLLKNFKKLYP-NILTKSGIMVGL--GEN 218 (293)
Q Consensus 160 l~~aG~~~i~~--------~le--ss~~---~~~~i-~~~~----~~e~~l~~i~~~~~~~p-gi~~~~~~ivG~--gEt 218 (293)
+.++|++.+.+ .++ +... ++.+- ..++ ...-.++.+..+++..+ .++ |+|- -.|
T Consensus 189 ~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ip-----Iig~GGI~~ 263 (299)
T cd02940 189 AKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLP-----ISGIGGIES 263 (299)
T ss_pred HHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCc-----EEEECCCCC
Confidence 99999999873 222 1100 11110 0111 23345788888888742 333 3444 467
Q ss_pred HHHHHHHHHHHHhCCCCEEEee
Q psy2895 219 DEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 219 ~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
.+|..+.+. .|.+.+.+.
T Consensus 264 ~~da~~~l~----aGA~~V~i~ 281 (299)
T cd02940 264 WEDAAEFLL----LGASVVQVC 281 (299)
T ss_pred HHHHHHHHH----cCCChheEc
Confidence 777776652 788877764
No 344
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=83.50 E-value=12 Score=33.43 Aligned_cols=26 Identities=12% Similarity=0.088 Sum_probs=11.4
Q ss_pred EEeec-CCCHHHHHHHHHHHHhCCCCE
Q psy2895 211 IMVGL-GENDEEILTVIHDMRNHNIDI 236 (293)
Q Consensus 211 ~ivG~-gEt~ed~~~~l~~l~~l~~~~ 236 (293)
+|+|. ..+.++..+..+..+++|++.
T Consensus 73 vi~gv~~~~t~~~i~la~~a~~~Gad~ 99 (290)
T TIGR00683 73 LIAQVGSVNLKEAVELGKYATELGYDC 99 (290)
T ss_pred EEEecCCCCHHHHHHHHHHHHHhCCCE
Confidence 34444 234444444444444444443
No 345
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=83.49 E-value=13 Score=32.47 Aligned_cols=18 Identities=17% Similarity=0.056 Sum_probs=8.6
Q ss_pred HHHHHHHHHcCCCeeeec
Q psy2895 154 NHVLKIFKQALPDVLNHN 171 (293)
Q Consensus 154 ~e~l~~l~~aG~~~i~~~ 171 (293)
++.++.++++|.+.+.+.
T Consensus 19 ~e~~~~~~~~G~~~iEl~ 36 (284)
T PRK13210 19 EERLVFAKELGFDFVEMS 36 (284)
T ss_pred HHHHHHHHHcCCCeEEEe
Confidence 444455555555544443
No 346
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=83.13 E-value=29 Score=29.80 Aligned_cols=127 Identities=14% Similarity=0.067 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcC-CCcCcHHHHHHHHHHcCCCee
Q psy2895 90 IEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIP-DFRNQINHVLKIFKQALPDVL 168 (293)
Q Consensus 90 ~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~-~~~~~~~e~l~~l~~aG~~~i 168 (293)
.+-+.+-++.+.+.|+..|++..-+.+ -..+.+.+.++++.. .+..+++... |...+-.+.++.+.+.|+.++
T Consensus 72 ~~iM~~DI~~~~~lG~~GVV~G~lt~d--g~iD~~~le~Li~aA----~gL~vTFHrAFD~~~d~~~ale~li~~Gv~RI 145 (241)
T COG3142 72 LEIMLEDIRLARELGVQGVVLGALTAD--GNIDMPRLEKLIEAA----GGLGVTFHRAFDECPDPLEALEQLIELGVERI 145 (241)
T ss_pred HHHHHHHHHHHHHcCCCcEEEeeecCC--CccCHHHHHHHHHHc----cCCceeeehhhhhcCCHHHHHHHHHHCCCcEE
Confidence 334566677778899999988665532 122345555555443 2456776543 433333678999999999997
Q ss_pred eeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEe
Q psy2895 169 NHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTI 239 (293)
Q Consensus 169 ~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i 239 (293)
-=+-+. .+..+-++.++.+.+.- +- ...+|.|-|=+.+.+++... ..|+..++.
T Consensus 146 LTsGg~-----------~sa~eg~~~l~~li~~a-~g--ri~Im~GaGV~~~N~~~l~~---~tg~~e~H~ 199 (241)
T COG3142 146 LTSGGK-----------ASALEGLDLLKRLIEQA-KG--RIIIMAGAGVRAENIAELVL---LTGVTEVHG 199 (241)
T ss_pred ecCCCc-----------CchhhhHHHHHHHHHHh-cC--CEEEEeCCCCCHHHHHHHHH---hcCchhhhh
Confidence 532111 12222233333333321 11 24578888888877766543 455544433
No 347
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=83.11 E-value=12 Score=33.40 Aligned_cols=48 Identities=6% Similarity=0.101 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEE
Q psy2895 187 DYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDIL 237 (293)
Q Consensus 187 ~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i 237 (293)
+.+++.+.++.+.+..+| ...+|+|.+.+.++..+..+.+++.|++.+
T Consensus 51 s~eEr~~l~~~~~~~~~~---~~pvi~gv~~~t~~~i~~a~~a~~~Gad~v 98 (289)
T cd00951 51 TPDEYAQVVRAAVEETAG---RVPVLAGAGYGTATAIAYAQAAEKAGADGI 98 (289)
T ss_pred CHHHHHHHHHHHHHHhCC---CCCEEEecCCCHHHHHHHHHHHHHhCCCEE
Confidence 445555555554444212 122344442244555555555555555544
No 348
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=83.10 E-value=21 Score=32.48 Aligned_cols=128 Identities=14% Similarity=0.161 Sum_probs=74.2
Q ss_pred HHHHHHHHHC--CCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeeec
Q psy2895 94 KKIAYTINKL--KLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNHN 171 (293)
Q Consensus 94 ~~~~~~~~~~--G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~ 171 (293)
.+.++.+.+. |+..|++-.-+. ...++.+.++.|++.+|+..|-. ....+ .|..+.|.++|+|.+-++
T Consensus 109 ~er~~~L~~a~~~~d~iviD~AhG------hs~~~i~~ik~ir~~~p~~~via--GNV~T--~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 109 LEKMTSILEAVPQLKFICLDVANG------YSEHFVEFVKLVREAFPEHTIMA--GNVVT--GEMVEELILSGADIVKVG 178 (343)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCC------cHHHHHHHHHHHHhhCCCCeEEE--ecccC--HHHHHHHHHcCCCEEEEc
Confidence 4556666666 478888754443 24689999999999888643322 22344 788889999999999877
Q ss_pred ccc-chHHHhhcCC-C-CCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 172 IET-VPRLYKKVRP-G-SDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 172 les-s~~~~~~i~~-~-~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
+=. |-=.-+.+.. + -...-+.++.+.++.. +.++-++- | -.+-.|+...+ .+|.+.+-+.
T Consensus 179 iGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~--~v~VIaDG--G-Ir~~gDI~KAL----A~GAd~VMlG 241 (343)
T TIGR01305 179 IGPGSVCTTRTKTGVGYPQLSAVIECADAAHGL--KGHIISDG--G-CTCPGDVAKAF----GAGADFVMLG 241 (343)
T ss_pred ccCCCcccCceeCCCCcCHHHHHHHHHHHhccC--CCeEEEcC--C-cCchhHHHHHH----HcCCCEEEEC
Confidence 533 3111122221 2 1344455555555544 55443321 1 23334544433 3788877665
No 349
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=82.85 E-value=28 Score=31.58 Aligned_cols=130 Identities=15% Similarity=0.175 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeee
Q psy2895 91 EEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNH 170 (293)
Q Consensus 91 eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~ 170 (293)
++..+.++.+.+.|++.|.+...... .+...++++.+++.+|++ .+......+ .+.+..+.++|+|.+.+
T Consensus 93 ~~~~~~~~~l~eagv~~I~vd~~~G~------~~~~~~~i~~ik~~~p~v--~Vi~G~v~t--~~~A~~l~~aGaD~I~v 162 (325)
T cd00381 93 EDDKERAEALVEAGVDVIVIDSAHGH------SVYVIEMIKFIKKKYPNV--DVIAGNVVT--AEAARDLIDAGADGVKV 162 (325)
T ss_pred hhHHHHHHHHHhcCCCEEEEECCCCC------cHHHHHHHHHHHHHCCCc--eEEECCCCC--HHHHHHHHhcCCCEEEE
Confidence 34566778888889998887543321 246778999999887643 333222233 67788888999999987
Q ss_pred cccc-chH-HHhhcCCCC-CHHHHHHHHHHHHHhCCCceeeEeEEe-ecCCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 171 NIET-VPR-LYKKVRPGS-DYKHSLNLLKNFKKLYPNILTKSGIMV-GLGENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 171 ~les-s~~-~~~~i~~~~-~~e~~l~~i~~~~~~~pgi~~~~~~iv-G~gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
++-. +.- .......+. ++.-+.++.+.+++. ++++ |. |=-.+..|+.+.+ .+|.+.+.+.
T Consensus 163 g~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~--~vpV----IA~GGI~~~~di~kAl----a~GA~~VmiG 226 (325)
T cd00381 163 GIGPGSICTTRIVTGVGVPQATAVADVAAAARDY--GVPV----IADGGIRTSGDIVKAL----AAGADAVMLG 226 (325)
T ss_pred CCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhc--CCcE----EecCCCCCHHHHHHHH----HcCCCEEEec
Confidence 5321 211 111111111 334444444445444 5543 32 2134556665554 3888877764
No 350
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=82.84 E-value=6.7 Score=34.07 Aligned_cols=132 Identities=12% Similarity=0.080 Sum_probs=76.8
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCc-------CcHHHHHHHH
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFR-------NQINHVLKIF 160 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~-------~~~~e~l~~l 160 (293)
+++..+.+..+.+.++ +..+-|.+|...-++ .+.+.+.++..++. +|.+++.|++ +.+++.++..
T Consensus 22 lg~~~~~dlLe~ag~y-ID~~K~g~Gt~~l~~---~~~l~eki~l~~~~----gV~v~~GGtl~E~a~~q~~~~~yl~~~ 93 (244)
T PF02679_consen 22 LGLRYLEDLLESAGDY-IDFLKFGWGTSALYP---EEILKEKIDLAHSH----GVYVYPGGTLFEVAYQQGKFDEYLEEC 93 (244)
T ss_dssp --HHHHHHHHHHHGGG--SEEEE-TTGGGGST---CHHHHHHHHHHHCT----T-EEEE-HHHHHHHHHTT-HHHHHHHH
T ss_pred CCHHHHHHHHHHhhhh-ccEEEecCceeeecC---HHHHHHHHHHHHHc----CCeEeCCcHHHHHHHhcChHHHHHHHH
Confidence 5555555555554443 677888888743222 35677788777765 5777664332 2347889999
Q ss_pred HHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-------CCCHHHHHHHHHHHHhCC
Q psy2895 161 KQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-------GENDEEILTVIHDMRNHN 233 (293)
Q Consensus 161 ~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-------gEt~ed~~~~l~~l~~l~ 233 (293)
++.|++.+-++--+. .-+.+++.+.|+.+++. |+.+-+- ||- ..|.+++.+.++.-.+.|
T Consensus 94 k~lGf~~IEiSdGti---------~l~~~~r~~~I~~~~~~--Gf~v~~E--vG~K~~~~~~~~~~~~~i~~~~~dLeAG 160 (244)
T PF02679_consen 94 KELGFDAIEISDGTI---------DLPEEERLRLIRKAKEE--GFKVLSE--VGKKDPESDFSLDPEELIEQAKRDLEAG 160 (244)
T ss_dssp HHCT-SEEEE--SSS------------HHHHHHHHHHHCCT--TSEEEEE--ES-SSHHHHTT--CCHHHHHHHHHHHHT
T ss_pred HHcCCCEEEecCCce---------eCCHHHHHHHHHHHHHC--CCEEeec--ccCCCchhcccCCHHHHHHHHHHHHHCC
Confidence 999999988762110 23677788888888888 8865443 343 133556667776667778
Q ss_pred CCEEEee
Q psy2895 234 IDILTIG 240 (293)
Q Consensus 234 ~~~i~i~ 240 (293)
.+.|-+-
T Consensus 161 A~~ViiE 167 (244)
T PF02679_consen 161 ADKVIIE 167 (244)
T ss_dssp ECEEEE-
T ss_pred CCEEEEe
Confidence 8877663
No 351
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=82.81 E-value=24 Score=30.88 Aligned_cols=11 Identities=9% Similarity=0.033 Sum_probs=5.0
Q ss_pred HHHHHHHHHHh
Q psy2895 191 SLNLLKNFKKL 201 (293)
Q Consensus 191 ~l~~i~~~~~~ 201 (293)
+.+.++.+++.
T Consensus 101 ~~~~i~~a~~l 111 (283)
T PRK13209 101 MRKAIQLAQDL 111 (283)
T ss_pred HHHHHHHHHHc
Confidence 33444444544
No 352
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=82.78 E-value=26 Score=31.14 Aligned_cols=80 Identities=24% Similarity=0.288 Sum_probs=51.6
Q ss_pred HHHHHHHHHcCCCeeeeccccchHHHhhcCC--CCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHh
Q psy2895 154 NHVLKIFKQALPDVLNHNIETVPRLYKKVRP--GSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRN 231 (293)
Q Consensus 154 ~e~l~~l~~aG~~~i~~~less~~~~~~i~~--~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~ 231 (293)
.+.++.+.++|+|.+.+++-+ +.. +.... ..+.+...+.++.+++.. +++ +.+.++-+.++..+.++.+.+
T Consensus 105 ~~~a~~~~~~G~d~iElN~~c-P~~-~~~g~~~~~~~~~~~eiv~~vr~~~-~~P----v~vKl~~~~~~~~~~a~~~~~ 177 (296)
T cd04740 105 VEVAEKLADAGADAIELNISC-PNV-KGGGMAFGTDPEAVAEIVKAVKKAT-DVP----VIVKLTPNVTDIVEIARAAEE 177 (296)
T ss_pred HHHHHHHHHcCCCEEEEECCC-CCC-CCCcccccCCHHHHHHHHHHHHhcc-CCC----EEEEeCCCchhHHHHHHHHHH
Confidence 456777778889988887644 211 11111 246677888888888763 333 344444445578888888999
Q ss_pred CCCCEEEee
Q psy2895 232 HNIDILTIG 240 (293)
Q Consensus 232 l~~~~i~i~ 240 (293)
.|++.+.+.
T Consensus 178 ~G~d~i~~~ 186 (296)
T cd04740 178 AGADGLTLI 186 (296)
T ss_pred cCCCEEEEE
Confidence 999987663
No 353
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=82.78 E-value=30 Score=30.19 Aligned_cols=131 Identities=8% Similarity=0.078 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeee
Q psy2895 91 EEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNH 170 (293)
Q Consensus 91 eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~ 170 (293)
.++.+.++.+.+.|+++++++--+.... . ...-.++++.+.+.. ++.+.+. .+..+ .+.++++.++|++.+.+
T Consensus 30 ~dp~~~a~~~~~~g~~~l~i~Dl~~~~~-~--~~~n~~~i~~i~~~~-~~pv~~g-GGi~s--~~d~~~l~~~G~~~vvi 102 (258)
T PRK01033 30 GDPINAVRIFNEKEVDELIVLDIDASKR-G--SEPNYELIENLASEC-FMPLCYG-GGIKT--LEQAKKIFSLGVEKVSI 102 (258)
T ss_pred CCHHHHHHHHHHcCCCEEEEEECCCCcC-C--CcccHHHHHHHHHhC-CCCEEEC-CCCCC--HHHHHHHHHCCCCEEEE
Confidence 3677788889999999999876553211 1 112246666666642 3334332 24444 56677777889999888
Q ss_pred ccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec------------CCCHHHHHHHHHHHHhCCCCEEE
Q psy2895 171 NIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL------------GENDEEILTVIHDMRNHNIDILT 238 (293)
Q Consensus 171 ~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~------------gEt~ed~~~~l~~l~~l~~~~i~ 238 (293)
+-.. ++ +.+-+.+..+...+. -+.++.++--|. ..+..+..+.++.+.+.+++.+.
T Consensus 103 gs~~----~~------~~~~~~~~~~~~~~~--~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii 170 (258)
T PRK01033 103 NTAA----LE------DPDLITEAAERFGSQ--SVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGEIL 170 (258)
T ss_pred ChHH----hc------CHHHHHHHHHHhCCC--cEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEEE
Confidence 7321 11 122222222222111 244555544331 13444567788888899999887
Q ss_pred ee
Q psy2895 239 IG 240 (293)
Q Consensus 239 i~ 240 (293)
++
T Consensus 171 ~~ 172 (258)
T PRK01033 171 LN 172 (258)
T ss_pred EE
Confidence 75
No 354
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=82.78 E-value=4.6 Score=37.89 Aligned_cols=17 Identities=24% Similarity=0.698 Sum_probs=14.6
Q ss_pred CcccCCCCcCcccCCCC
Q psy2895 68 GSICTRRCKFCNISHGR 84 (293)
Q Consensus 68 t~~C~~~C~fC~~~~~~ 84 (293)
+-||+..|.||+++...
T Consensus 6 ~~gC~~~C~wC~~p~~~ 22 (404)
T TIGR03278 6 GIDCRGFCRYCYFKKVD 22 (404)
T ss_pred CCCCCCcCCCCCCCCCC
Confidence 46999999999998754
No 355
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=82.77 E-value=34 Score=30.37 Aligned_cols=139 Identities=15% Similarity=0.227 Sum_probs=80.5
Q ss_pred ChhHHHHHHHHHHHCCCcEEEEeeecCC------CCCCCChhHHHHHHHHHHhhC-CCcEEEEEcCCCcCcHHHHHHHHH
Q psy2895 89 DIEEPKKIAYTINKLKLNYVVITSVNRD------DLHDGGSSHFVSCIKHIRKLS-TKIKIEILIPDFRNQINHVLKIFK 161 (293)
Q Consensus 89 ~~eei~~~~~~~~~~G~~~i~l~gg~~~------~l~~~~~~~~~~ll~~i~~~~-~~~~i~~~~~~~~~~~~e~l~~l~ 161 (293)
++++..+.++.+.+.|++.|-|..+.|. .+ ..+.+.+.++++.+++.. -.+.+++ +++.. +..+.++.+.
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~-~~~~~~~~eiv~~vr~~~~~Pv~vKl-~~~~~-~~~~~a~~~~ 176 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAF-GTDPEAVAEIVKAVKKATDVPVIVKL-TPNVT-DIVEIARAAE 176 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccc-cCCHHHHHHHHHHHHhccCCCEEEEe-CCCch-hHHHHHHHHH
Confidence 5788899999888889998877554421 11 123567888999998763 1234443 34322 2356778888
Q ss_pred HcCCCeeee-c--------cccchHHHh----hcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec--CCCHHHHHHHH
Q psy2895 162 QALPDVLNH-N--------IETVPRLYK----KVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL--GENDEEILTVI 226 (293)
Q Consensus 162 ~aG~~~i~~-~--------less~~~~~----~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~--gEt~ed~~~~l 226 (293)
++|+|.+.+ + .++...... .+.........++.++.+++.. +++ ++|. -.|.+|..+.+
T Consensus 177 ~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~-~ip-----ii~~GGI~~~~da~~~l 250 (296)
T cd04740 177 EAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAV-EIP-----IIGVGGIASGEDALEFL 250 (296)
T ss_pred HcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhc-CCC-----EEEECCCCCHHHHHHHH
Confidence 899998764 1 111000000 0111111223566677777652 332 2333 35778877766
Q ss_pred HHHHhCCCCEEEee
Q psy2895 227 HDMRNHNIDILTIG 240 (293)
Q Consensus 227 ~~l~~l~~~~i~i~ 240 (293)
. .|.+.+.+.
T Consensus 251 ~----~GAd~V~ig 260 (296)
T cd04740 251 M----AGASAVQVG 260 (296)
T ss_pred H----cCCCEEEEc
Confidence 3 789988885
No 356
>KOG4175|consensus
Probab=82.74 E-value=28 Score=29.32 Aligned_cols=52 Identities=13% Similarity=0.214 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCceeeEeEEeec-CCC-HHHHHHHHHHHHhCCCCEEEe
Q psy2895 185 GSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GEN-DEEILTVIHDMRNHNIDILTI 239 (293)
Q Consensus 185 ~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt-~ed~~~~l~~l~~l~~~~i~i 239 (293)
+.++..+++.++.++.. |+.+ --++.|. +-- .--.+..+..+++.|..-+-+
T Consensus 76 g~tl~~i~emvk~ar~~--gvt~-PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfii 129 (268)
T KOG4175|consen 76 GTTLNSIIEMVKEARPQ--GVTC-PIILMGYYNPILRYGVENYIQVAKNAGANGFII 129 (268)
T ss_pred CCcHHHHHHHHHHhccc--Cccc-ceeeeecccHHHhhhHHHHHHHHHhcCCCceEe
Confidence 55788888888888777 7733 2234454 110 011245666677777765444
No 357
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=82.70 E-value=15 Score=33.17 Aligned_cols=87 Identities=8% Similarity=0.003 Sum_probs=59.8
Q ss_pred HHHHHHHHHcCCCeeeecccc-chHHHhhcCC---CCCHHHHHHHHHHHHHhCC-CceeeEeEEeecCCCHHHHHHHHHH
Q psy2895 154 NHVLKIFKQALPDVLNHNIET-VPRLYKKVRP---GSDYKHSLNLLKNFKKLYP-NILTKSGIMVGLGENDEEILTVIHD 228 (293)
Q Consensus 154 ~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~---~~~~e~~l~~i~~~~~~~p-gi~~~~~~ivG~gEt~ed~~~~l~~ 228 (293)
.+.++.+.++|.|.+.++.-- ++.+.+.=.. -.+++...+.++.+++..| ++++++-+=+|. ++.++..+.++.
T Consensus 78 ~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~-~~~~~~~~~a~~ 156 (312)
T PRK10550 78 AENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGW-DSGERKFEIADA 156 (312)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCC-CCchHHHHHHHH
Confidence 345566777899988887655 4555542111 1367778888888888764 577766665665 333457788899
Q ss_pred HHhCCCCEEEeec
Q psy2895 229 MRNHNIDILTIGQ 241 (293)
Q Consensus 229 l~~l~~~~i~i~~ 241 (293)
+.+.|++.+.++.
T Consensus 157 l~~~Gvd~i~Vh~ 169 (312)
T PRK10550 157 VQQAGATELVVHG 169 (312)
T ss_pred HHhcCCCEEEECC
Confidence 9999999999863
No 358
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=82.59 E-value=13 Score=33.64 Aligned_cols=86 Identities=12% Similarity=0.137 Sum_probs=57.6
Q ss_pred HHHHHHHHcCCCeeeecccc-chHHHhhcCC---CCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHH
Q psy2895 155 HVLKIFKQALPDVLNHNIET-VPRLYKKVRP---GSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMR 230 (293)
Q Consensus 155 e~l~~l~~aG~~~i~~~les-s~~~~~~i~~---~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~ 230 (293)
+.++.+.+.|++.+.++.-. .+.+.+.-.. -.+++...++++.+++.. +++++.-+-.|..++.++..+.++.+.
T Consensus 81 ~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~-d~pv~vKiR~G~~~~~~~~~~~a~~le 159 (321)
T PRK10415 81 DAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAV-DVPVTLKIRTGWAPEHRNCVEIAQLAE 159 (321)
T ss_pred HHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhc-CCceEEEEEccccCCcchHHHHHHHHH
Confidence 34555566788888887655 3444433211 125777888888887753 566666666676555567888888889
Q ss_pred hCCCCEEEeec
Q psy2895 231 NHNIDILTIGQ 241 (293)
Q Consensus 231 ~l~~~~i~i~~ 241 (293)
+.|++.+.++.
T Consensus 160 ~~G~d~i~vh~ 170 (321)
T PRK10415 160 DCGIQALTIHG 170 (321)
T ss_pred HhCCCEEEEec
Confidence 99999988863
No 359
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=82.50 E-value=11 Score=29.27 Aligned_cols=71 Identities=10% Similarity=0.076 Sum_probs=49.7
Q ss_pred HHHHHHHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec--CCCHHHHHHHHHHHHh
Q psy2895 154 NHVLKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL--GENDEEILTVIHDMRN 231 (293)
Q Consensus 154 ~e~l~~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~--gEt~ed~~~~l~~l~~ 231 (293)
++.++...+.+++.+.++. +. +++.+...+.++.++++ |+.- .-+++|= .-..+++.+....+++
T Consensus 40 e~~v~aa~~~~adiVglS~---------L~-t~~~~~~~~~~~~l~~~--gl~~-v~vivGG~~~i~~~d~~~~~~~L~~ 106 (128)
T cd02072 40 EEFIDAAIETDADAILVSS---------LY-GHGEIDCKGLREKCDEA--GLKD-ILLYVGGNLVVGKQDFEDVEKRFKE 106 (128)
T ss_pred HHHHHHHHHcCCCEEEEec---------cc-cCCHHHHHHHHHHHHHC--CCCC-CeEEEECCCCCChhhhHHHHHHHHH
Confidence 6677777778888877652 11 34566677788888888 8732 4566664 2466777778888899
Q ss_pred CCCCEE
Q psy2895 232 HNIDIL 237 (293)
Q Consensus 232 l~~~~i 237 (293)
+|++.+
T Consensus 107 ~Gv~~v 112 (128)
T cd02072 107 MGFDRV 112 (128)
T ss_pred cCCCEE
Confidence 999864
No 360
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=82.29 E-value=36 Score=30.41 Aligned_cols=81 Identities=15% Similarity=0.142 Sum_probs=48.9
Q ss_pred HHHHHHHHcCCCeeeecccc-chHHHhhcC--CCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHh
Q psy2895 155 HVLKIFKQALPDVLNHNIET-VPRLYKKVR--PGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRN 231 (293)
Q Consensus 155 e~l~~l~~aG~~~i~~~les-s~~~~~~i~--~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~ 231 (293)
+.++.+.++|+|.+.+++-. .....+... -.++.+...+.++.+++.. ++ -+++-+.-...++.+.++.+.+
T Consensus 117 ~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~----Pv~vKl~~~~~~~~~~a~~~~~ 191 (299)
T cd02940 117 ELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAV-KI----PVIAKLTPNITDIREIARAAKE 191 (299)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhc-CC----CeEEECCCCchhHHHHHHHHHH
Confidence 34555555677777776644 221111111 0246777888888887752 23 3445454344578888888999
Q ss_pred CCCCEEEee
Q psy2895 232 HNIDILTIG 240 (293)
Q Consensus 232 l~~~~i~i~ 240 (293)
.|++.+.+.
T Consensus 192 ~Gadgi~~~ 200 (299)
T cd02940 192 GGADGVSAI 200 (299)
T ss_pred cCCCEEEEe
Confidence 999988764
No 361
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=82.27 E-value=30 Score=29.37 Aligned_cols=130 Identities=14% Similarity=0.143 Sum_probs=81.3
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEc----C-CCcCc---HHHHHH
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILI----P-DFRNQ---INHVLK 158 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~----~-~~~~~---~~e~l~ 158 (293)
..+.++|.+.++++.++|+..|.+. | .+..+.+..-+ +..+++++ | |.... +.|. +
T Consensus 14 ~~t~~~i~~lc~~A~~~~~~avcv~----p--------~~v~~a~~~l~---~~~v~v~tVigFP~G~~~~~~K~~E~-~ 77 (211)
T TIGR00126 14 DTTEEDIITLCAQAKTYKFAAVCVN----P--------SYVPLAKELLK---GTEVRICTVVGFPLGASTTDVKLYET-K 77 (211)
T ss_pred CCCHHHHHHHHHHHHhhCCcEEEeC----H--------HHHHHHHHHcC---CCCCeEEEEeCCCCCCCcHHHHHHHH-H
Confidence 5788999999999999999888762 1 22233332212 22344433 4 33221 2333 3
Q ss_pred HHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHHHHHhCCCCEE
Q psy2895 159 IFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHDMRNHNIDIL 237 (293)
Q Consensus 159 ~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~~l~~l~~~~i 237 (293)
...+.|.|.+.+-+.- ..+. .+.++...+-++.+++...|+.+.. |+-. .-+.+++....+...+.|.|++
T Consensus 78 ~Av~~GAdEiDvv~n~-----g~l~-~g~~~~v~~ei~~i~~~~~g~~lKv--IlE~~~L~~~ei~~a~~ia~eaGADfv 149 (211)
T TIGR00126 78 EAIKYGADEVDMVINI-----GALK-DGNEEVVYDDIRAVVEACAGVLLKV--IIETGLLTDEEIRKACEICIDAGADFV 149 (211)
T ss_pred HHHHcCCCEEEeecch-----Hhhh-CCcHHHHHHHHHHHHHHcCCCeEEE--EEecCCCCHHHHHHHHHHHHHhCCCEE
Confidence 4445799988765431 1122 4567777788888887655665555 4433 3666888888899999999998
Q ss_pred Eee
Q psy2895 238 TIG 240 (293)
Q Consensus 238 ~i~ 240 (293)
-.+
T Consensus 150 KTs 152 (211)
T TIGR00126 150 KTS 152 (211)
T ss_pred EeC
Confidence 764
No 362
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=82.22 E-value=3.9 Score=35.26 Aligned_cols=132 Identities=17% Similarity=0.281 Sum_probs=71.1
Q ss_pred ChhHHHHHHHHHHHCCCcEEEEeee--------cCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEc-CCCcCcHHHHHHH
Q psy2895 89 DIEEPKKIAYTINKLKLNYVVITSV--------NRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILI-PDFRNQINHVLKI 159 (293)
Q Consensus 89 ~~eei~~~~~~~~~~G~~~i~l~gg--------~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~-~~~~~~~~e~l~~ 159 (293)
..+++++.+.++.- ..++|.=- ..-++ ....+.+.++++.+++. ++.++++. |+ .+.++.
T Consensus 72 ~t~e~~~ia~~~kP---~~vtLVPE~r~e~TTegGldv-~~~~~~l~~~i~~L~~~--gIrvSLFiDP~-----~~qi~~ 140 (239)
T PF03740_consen 72 PTEEMVDIALKVKP---DQVTLVPEKREELTTEGGLDV-AGNRDRLKPVIKRLKDA--GIRVSLFIDPD-----PEQIEA 140 (239)
T ss_dssp SSHHHHHHHHHH-----SEEEEE--SGGGBSTTSSB-T-CGGHHHHHHHHHHHHHT--T-EEEEEE-S------HHHHHH
T ss_pred CCHHHHHHHHhCCc---CEEEECCCCCCCcCCCcCChh-hcCHHHHHHHHHHHHhC--CCEEEEEeCCC-----HHHHHH
Confidence 35778877766643 34444311 11112 23357899999999986 67888876 43 678899
Q ss_pred HHHcCCCeeeeccccchHHHhhcCCCCC--HHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEE
Q psy2895 160 FKQALPDVLNHNIETVPRLYKKVRPGSD--YKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDIL 237 (293)
Q Consensus 160 l~~aG~~~i~~~less~~~~~~i~~~~~--~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i 237 (293)
-++.|.+++-+.-..--+.+..-.+... ++.+.++.+.+++. |+.+++ |+|=+.+.+... ++--++..+
T Consensus 141 A~~~Gad~VELhTG~yA~a~~~~~~~~~ell~~l~~aa~~a~~l--GL~VnA----GHgL~y~N~~~i---~~i~~i~Ev 211 (239)
T PF03740_consen 141 AKELGADRVELHTGPYANAFDDAEEAEEELLERLRDAARYAHEL--GLGVNA----GHGLNYDNVRPI---AAIPPIEEV 211 (239)
T ss_dssp HHHTT-SEEEEETHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHT--T-EEEE----ETT--TTTHHHH---HTSTTEEEE
T ss_pred HHHcCCCEEEEehhHhhhhcCCHHHHHHHHHHHHHHHHHHHHHc--CCEEec----CCCCCHHHHHHH---HhCCCceEE
Confidence 9999999987642221111110000011 46677888888888 887765 565544443322 222446666
Q ss_pred Eee
Q psy2895 238 TIG 240 (293)
Q Consensus 238 ~i~ 240 (293)
+|.
T Consensus 212 nIG 214 (239)
T PF03740_consen 212 NIG 214 (239)
T ss_dssp EE-
T ss_pred ecC
Confidence 775
No 363
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=82.22 E-value=42 Score=31.00 Aligned_cols=79 Identities=10% Similarity=0.075 Sum_probs=50.5
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEc-C--CCcCcHHHHHHHHHHcC
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILI-P--DFRNQINHVLKIFKQAL 164 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~-~--~~~~~~~e~l~~l~~aG 164 (293)
.+++.+.+.++.+.+.|+..|.+.--.. ...+..+.++++.+++..+ +.+.+.. + ++.. ...+..+ ++|
T Consensus 138 ~~~~~l~~~~~~~~~~g~~~i~l~DT~G----~~~P~~v~~li~~l~~~~~-~~l~~H~Hnd~GlA~--AN~laA~-~aG 209 (363)
T TIGR02090 138 TDIDFLIKVFKRAEEAGADRINIADTVG----VLTPQKMEELIKKLKENVK-LPISVHCHNDFGLAT--ANSIAGV-KAG 209 (363)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeCCCC----ccCHHHHHHHHHHHhcccC-ceEEEEecCCCChHH--HHHHHHH-HCC
Confidence 4688888888888888888877742111 1124678888888887654 4555543 2 3222 4456666 479
Q ss_pred CCeeeecccc
Q psy2895 165 PDVLNHNIET 174 (293)
Q Consensus 165 ~~~i~~~les 174 (293)
++.+..++.+
T Consensus 210 a~~vd~s~~G 219 (363)
T TIGR02090 210 AEQVHVTVNG 219 (363)
T ss_pred CCEEEEEeec
Confidence 9888765544
No 364
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=82.17 E-value=36 Score=30.27 Aligned_cols=80 Identities=21% Similarity=0.241 Sum_probs=53.3
Q ss_pred HHHHHHHHHcC--CCeeeeccccchHHHhhcC--CCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHH
Q psy2895 154 NHVLKIFKQAL--PDVLNHNIETVPRLYKKVR--PGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDM 229 (293)
Q Consensus 154 ~e~l~~l~~aG--~~~i~~~less~~~~~~i~--~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l 229 (293)
.+.++.+.+++ ++.+.+++-+ +.. +... -..+.+...+.++.+++.. ++++ ++-+..+.++..+.++.+
T Consensus 106 ~~~a~~~~~~~~~~d~ielN~~c-P~~-~~~g~~l~~~~~~~~eiv~~vr~~~-~~pv----~vKi~~~~~~~~~~a~~l 178 (300)
T TIGR01037 106 AEVAEKLEKAPPYVDAYELNLSC-PHV-KGGGIAIGQDPELSADVVKAVKDKT-DVPV----FAKLSPNVTDITEIAKAA 178 (300)
T ss_pred HHHHHHHHhccCccCEEEEECCC-CCC-CCCccccccCHHHHHHHHHHHHHhc-CCCE----EEECCCChhhHHHHHHHH
Confidence 45667776653 8888888654 111 1111 1247788889999998863 3333 333445667888999999
Q ss_pred HhCCCCEEEee
Q psy2895 230 RNHNIDILTIG 240 (293)
Q Consensus 230 ~~l~~~~i~i~ 240 (293)
.+.|++.+.++
T Consensus 179 ~~~G~d~i~v~ 189 (300)
T TIGR01037 179 EEAGADGLTLI 189 (300)
T ss_pred HHcCCCEEEEE
Confidence 99999999875
No 365
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=82.12 E-value=40 Score=30.70 Aligned_cols=130 Identities=16% Similarity=0.134 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHCCC--cEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeee
Q psy2895 92 EPKKIAYTINKLKL--NYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLN 169 (293)
Q Consensus 92 ei~~~~~~~~~~G~--~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~ 169 (293)
+-.+.+.++.+.|+ .-|.+-.-++ ....+.++++.|++.+|+..+-.- +..+ .+....|.++|+|.+.
T Consensus 97 ~~~~~~~~Lv~ag~~~d~i~iD~a~g------h~~~~~e~I~~ir~~~p~~~vi~g--~V~t--~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 97 DEYDFVDQLAAEGLTPEYITIDIAHG------HSDSVINMIQHIKKHLPETFVIAG--NVGT--PEAVRELENAGADATK 166 (326)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCC------chHHHHHHHHHHHhhCCCCeEEEE--ecCC--HHHHHHHHHcCcCEEE
Confidence 44567788888865 8777644332 246788999999998876543331 1233 6778888899999987
Q ss_pred ecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEe-ecCCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 170 HNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMV-GLGENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 170 ~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~iv-G~gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
++.-. +--+-+.....+..+.-+..+..+++.. .++ +|. |=-.|..|+.+.+. +|.+.+.+.
T Consensus 167 vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~-~ip----VIAdGGI~~~~Di~KaLa----~GA~aV~vG 230 (326)
T PRK05458 167 VGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA-RKP----IIADGGIRTHGDIAKSIR----FGATMVMIG 230 (326)
T ss_pred ECCCCCcccccccccCCCCCccHHHHHHHHHHHc-CCC----EEEeCCCCCHHHHHHHHH----hCCCEEEec
Confidence 65322 2111111111122222344555665542 332 222 22477788776654 588887775
No 366
>PLN02417 dihydrodipicolinate synthase
Probab=82.11 E-value=16 Score=32.30 Aligned_cols=48 Identities=6% Similarity=0.105 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHHHHHhCCCCEE
Q psy2895 187 DYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHDMRNHNIDIL 237 (293)
Q Consensus 187 ~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~~l~~l~~~~i 237 (293)
+.+++.+.++.+.+..+| ...+|+|. ..+.++..+..+..+++|.+.+
T Consensus 52 s~~Er~~~~~~~~~~~~~---~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav 100 (280)
T PLN02417 52 SWDEHIMLIGHTVNCFGG---KIKVIGNTGSNSTREAIHATEQGFAVGMHAA 100 (280)
T ss_pred CHHHHHHHHHHHHHHhCC---CCcEEEECCCccHHHHHHHHHHHHHcCCCEE
Confidence 344444444444443222 12234444 3344455555555555555543
No 367
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=82.06 E-value=29 Score=30.00 Aligned_cols=83 Identities=20% Similarity=0.243 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCCCeeeec------c-cc-c-hH-HHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHH-H
Q psy2895 154 NHVLKIFKQALPDVLNHN------I-ET-V-PR-LYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEE-I 222 (293)
Q Consensus 154 ~e~l~~l~~aG~~~i~~~------l-es-s-~~-~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed-~ 222 (293)
.+.++.|.++|+|.++++ + ++ . ++ ..+.+..+.+.+..++.++.+++.. .+++ .+|+=+..-..- +
T Consensus 17 ~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~-~~pv--~lm~y~n~~~~~G~ 93 (242)
T cd04724 17 LEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN-TIPI--VLMGYYNPILQYGL 93 (242)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC-CCCE--EEEEecCHHHHhCH
Confidence 445555666666666665 2 22 1 22 2223444556666777777766541 2322 222211111111 2
Q ss_pred HHHHHHHHhCCCCEEEe
Q psy2895 223 LTVIHDMRNHNIDILTI 239 (293)
Q Consensus 223 ~~~l~~l~~l~~~~i~i 239 (293)
.+.++.+.+.|++.+.+
T Consensus 94 ~~fi~~~~~aG~~giii 110 (242)
T cd04724 94 ERFLRDAKEAGVDGLII 110 (242)
T ss_pred HHHHHHHHHCCCcEEEE
Confidence 34455556666666555
No 368
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=82.05 E-value=24 Score=29.92 Aligned_cols=84 Identities=17% Similarity=0.139 Sum_probs=48.6
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCe
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDV 167 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~ 167 (293)
++.++.... ...|+.+|...-|...+....+.+.+.++.+.+++.. ...++..+++.+ ...+-....+|++.
T Consensus 110 ~s~~Qa~~A----a~AGA~yvsP~vgR~~~~g~dg~~~i~~i~~~~~~~~--~~tkil~As~r~--~~ei~~a~~~Gad~ 181 (211)
T cd00956 110 FSAAQALLA----AKAGATYVSPFVGRIDDLGGDGMELIREIRTIFDNYG--FDTKILAASIRN--PQHVIEAALAGADA 181 (211)
T ss_pred cCHHHHHHH----HHcCCCEEEEecChHhhcCCCHHHHHHHHHHHHHHcC--CCceEEecccCC--HHHHHHHHHcCCCE
Confidence 455555533 3457777654444322332223556667777666653 345565555555 44444445689999
Q ss_pred eeeccccchHHHhhcC
Q psy2895 168 LNHNIETVPRLYKKVR 183 (293)
Q Consensus 168 i~~~less~~~~~~i~ 183 (293)
+.++ ++++++|.
T Consensus 182 vTv~----~~vl~~l~ 193 (211)
T cd00956 182 ITLP----PDVLEQLL 193 (211)
T ss_pred EEeC----HHHHHHHh
Confidence 9987 56676665
No 369
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=82.00 E-value=17 Score=31.11 Aligned_cols=133 Identities=15% Similarity=0.145 Sum_probs=79.0
Q ss_pred ChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCee
Q psy2895 89 DIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVL 168 (293)
Q Consensus 89 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i 168 (293)
...++.+.++.+.+.|++++++.--+. .. .+...-.++++.+.+..+ ..+.+-- |+.+ .+.++++-++|++++
T Consensus 27 ~~~dP~~~a~~~~~~g~~~l~ivDLda--a~-~g~~~n~~~i~~i~~~~~-~~i~vgG-GIrs--~ed~~~ll~~Ga~~V 99 (229)
T PF00977_consen 27 YSGDPVEVAKAFNEQGADELHIVDLDA--AK-EGRGSNLELIKEIAKETG-IPIQVGG-GIRS--IEDAERLLDAGADRV 99 (229)
T ss_dssp ECCCHHHHHHHHHHTT-SEEEEEEHHH--HC-CTHHHHHHHHHHHHHHSS-SEEEEES-SE-S--HHHHHHHHHTT-SEE
T ss_pred ECcCHHHHHHHHHHcCCCEEEEEEccC--cc-cCchhHHHHHHHHHhcCC-ccEEEeC-ccCc--HHHHHHHHHhCCCEE
Confidence 345667788888889999998875442 11 123345578888877643 4555532 5555 778888889999999
Q ss_pred eeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEee----c-C---CCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 169 NHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVG----L-G---ENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 169 ~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG----~-g---Et~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
-++-++ ++ +++-..+..+..-.. -+.++.++.-| . | .+.-+..+.++.+.++|+..+-+.
T Consensus 100 vigt~~----~~------~~~~l~~~~~~~g~~--~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~t 167 (229)
T PF00977_consen 100 VIGTEA----LE------DPELLEELAERYGSQ--RIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEELGAGEIILT 167 (229)
T ss_dssp EESHHH----HH------CCHHHHHHHHHHGGG--GEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEE
T ss_pred EeChHH----hh------chhHHHHHHHHcCcc--cEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHhcCCcEEEEe
Confidence 887443 11 122222333333332 35566666555 1 2 223568888899999999988665
No 370
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=81.91 E-value=14 Score=33.23 Aligned_cols=87 Identities=13% Similarity=0.192 Sum_probs=52.9
Q ss_pred HHHHHHHHHcCCCeeeeccc-cc--hHHHhhc-C-----CCCCHHHH----HHHHHHHHHhC-CCceeeEeEEee--c--
Q psy2895 154 NHVLKIFKQALPDVLNHNIE-TV--PRLYKKV-R-----PGSDYKHS----LNLLKNFKKLY-PNILTKSGIMVG--L-- 215 (293)
Q Consensus 154 ~e~l~~l~~aG~~~i~~~le-ss--~~~~~~i-~-----~~~~~e~~----l~~i~~~~~~~-pgi~~~~~~ivG--~-- 215 (293)
.+..++.+++|+|.+.+..- +. ...+.-. + -+.+.+.+ +++++.+++.. +++.+...+-.+ .
T Consensus 144 ~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~ 223 (327)
T cd02803 144 AAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPG 223 (327)
T ss_pred HHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCC
Confidence 34566677789999877532 10 1111110 1 12345444 67777788775 344444333221 1
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 216 GENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 216 gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
|.|.++..+.++.+.+.|++++.++
T Consensus 224 g~~~~e~~~la~~l~~~G~d~i~vs 248 (327)
T cd02803 224 GLTLEEAIEIAKALEEAGVDALHVS 248 (327)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 3588999999999999999999875
No 371
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=81.88 E-value=44 Score=31.04 Aligned_cols=79 Identities=11% Similarity=0.064 Sum_probs=45.9
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEc-C--CCcCcHHHHHHHHHHcC
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILI-P--DFRNQINHVLKIFKQAL 164 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~-~--~~~~~~~e~l~~l~~aG 164 (293)
.+++.+.+.++.+.+.|+..|.|.--.. ...+..+.++++.+++.. ++.+.+.. + |+.. .-.+..+ ++|
T Consensus 142 ~~~~~l~~~~~~~~~~Ga~~I~l~DT~G----~~~P~~v~~lv~~l~~~~-~~~l~~H~Hnd~GlA~--AN~laAv-~aG 213 (378)
T PRK11858 142 TDLDFLIEFAKAAEEAGADRVRFCDTVG----ILDPFTMYELVKELVEAV-DIPIEVHCHNDFGMAT--ANALAGI-EAG 213 (378)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeccCC----CCCHHHHHHHHHHHHHhc-CCeEEEEecCCcCHHH--HHHHHHH-HcC
Confidence 4577777777777777877776642111 112456777777777654 34444433 2 2221 3455555 478
Q ss_pred CCeeeecccc
Q psy2895 165 PDVLNHNIET 174 (293)
Q Consensus 165 ~~~i~~~les 174 (293)
++.+..++.+
T Consensus 214 a~~vd~tv~G 223 (378)
T PRK11858 214 AKQVHTTVNG 223 (378)
T ss_pred CCEEEEeecc
Confidence 8887765544
No 372
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=81.87 E-value=21 Score=31.24 Aligned_cols=12 Identities=8% Similarity=-0.014 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHh
Q psy2895 190 HSLNLLKNFKKL 201 (293)
Q Consensus 190 ~~l~~i~~~~~~ 201 (293)
.+.+.++.+++.
T Consensus 95 ~~~~~i~~a~~l 106 (279)
T TIGR00542 95 IMEKAIQLARDL 106 (279)
T ss_pred HHHHHHHHHHHh
Confidence 344445555555
No 373
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=81.87 E-value=20 Score=30.74 Aligned_cols=77 Identities=12% Similarity=0.125 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeee
Q psy2895 90 IEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLN 169 (293)
Q Consensus 90 ~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~ 169 (293)
..+.++.++.+.+.|++++++.--+. .. +...-.++++.+.+.. ...+.+. .|+.+ .|.++.+-++|++++-
T Consensus 34 ~~dp~~~a~~~~~~g~~~l~i~DLd~--~~--~~~~n~~~i~~i~~~~-~~~v~vg-GGir~--~edv~~~l~~Ga~~vi 105 (233)
T cd04723 34 TSDPLDVARAYKELGFRGLYIADLDA--IM--GRGDNDEAIRELAAAW-PLGLWVD-GGIRS--LENAQEWLKRGASRVI 105 (233)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEeCcc--cc--CCCccHHHHHHHHHhC-CCCEEEe-cCcCC--HHHHHHHHHcCCCeEE
Confidence 45778888999999999998864442 11 1223346677776542 2234432 25555 6778888889999998
Q ss_pred ecccc
Q psy2895 170 HNIET 174 (293)
Q Consensus 170 ~~les 174 (293)
++-++
T Consensus 106 igt~~ 110 (233)
T cd04723 106 VGTET 110 (233)
T ss_pred Eccee
Confidence 87554
No 374
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=81.81 E-value=15 Score=33.45 Aligned_cols=86 Identities=13% Similarity=0.130 Sum_probs=58.6
Q ss_pred HHHHHHHHHcCCCeeeecccc-chHHHhh-cCC--CCCHHHHHHHHHHHHHhCCCceeeEeEEeec--CCCHHHHHHHHH
Q psy2895 154 NHVLKIFKQALPDVLNHNIET-VPRLYKK-VRP--GSDYKHSLNLLKNFKKLYPNILTKSGIMVGL--GENDEEILTVIH 227 (293)
Q Consensus 154 ~e~l~~l~~aG~~~i~~~les-s~~~~~~-i~~--~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~--gEt~ed~~~~l~ 227 (293)
.+.++.++++|+|.|.++.-. ...+.+. ... -.+.+...++++.+++.. ++++++-+-+|. .+|.++..+.+.
T Consensus 80 ~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v-~~pVsvKiR~g~~~~~t~~~~~~~~~ 158 (333)
T PRK11815 80 AEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAV-SIPVTVKHRIGIDDQDSYEFLCDFVD 158 (333)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHc-CCceEEEEEeeeCCCcCHHHHHHHHH
Confidence 345666777899998887644 3444322 111 125677778888887753 566666666677 356678888889
Q ss_pred HHHhCCCCEEEee
Q psy2895 228 DMRNHNIDILTIG 240 (293)
Q Consensus 228 ~l~~l~~~~i~i~ 240 (293)
.+.+.|++.+.++
T Consensus 159 ~l~~aG~d~i~vh 171 (333)
T PRK11815 159 TVAEAGCDTFIVH 171 (333)
T ss_pred HHHHhCCCEEEEc
Confidence 9999999998886
No 375
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=81.60 E-value=42 Score=32.83 Aligned_cols=148 Identities=7% Similarity=0.038 Sum_probs=82.9
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcC-CCcCcH---------HHH
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIP-DFRNQI---------NHV 156 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~-~~~~~~---------~e~ 156 (293)
.....+.++.++...+.|+++++|.--+..--.....+...++++.+.+.. .+.+... |+.+.. .|.
T Consensus 263 ~~~~gdPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~---~ip~~vGGGIr~~~d~~~~~~~~~e~ 339 (538)
T PLN02617 263 VRNLGKPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENV---FVPLTVGGGIRDFTDANGRYYSSLEV 339 (538)
T ss_pred CCcCCCHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhC---CCCEEEcCCccccccccccccchHHH
Confidence 456778899999999999999988644320000111234678888887742 2333333 333210 267
Q ss_pred HHHHHHcCCCeeeeccccc---hHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeE----------------------
Q psy2895 157 LKIFKQALPDVLNHNIETV---PRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGI---------------------- 211 (293)
Q Consensus 157 l~~l~~aG~~~i~~~less---~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~---------------------- 211 (293)
++++-++|+|.+.++-... ++.+.. .+..+++-+.+..+..-+. -+-++.+.
T Consensus 340 ~~~~l~~GadkV~i~s~Av~~~~~~~~~-~~~~~p~~i~~~~~~fg~q--~ivvsiD~k~~~~~~~~~~~~~~~~~~~~~ 416 (538)
T PLN02617 340 ASEYFRSGADKISIGSDAVYAAEEYIAS-GVKTGKTSIEQISRVYGNQ--AVVVSIDPRRVYVKDPSDVPFKTVKVTNPG 416 (538)
T ss_pred HHHHHHcCCCEEEEChHHHhChhhhhcc-ccccCHHHHHHHHHHcCCc--eEEEEEecCcCcccCccccccccccccccC
Confidence 8888889999999874331 233321 1233444333333332111 12233331
Q ss_pred ------------Eeec-CCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 212 ------------MVGL-GENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 212 ------------ivG~-gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
+-|= ..|.-+..+.++.+.++|+..+-++
T Consensus 417 ~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gageil~t 458 (538)
T PLN02617 417 PNGEEYAWYQCTVKGGREGRPIGAYELAKAVEELGAGEILLN 458 (538)
T ss_pred cCcccceEEEEEEecCcccCCCCHHHHHHHHHhcCCCEEEEe
Confidence 1111 2345677888888999999887665
No 376
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=81.47 E-value=15 Score=32.86 Aligned_cols=81 Identities=9% Similarity=0.054 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHHHHHh
Q psy2895 153 INHVLKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHDMRN 231 (293)
Q Consensus 153 ~~e~l~~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~~l~~ 231 (293)
+.+.++.+.+.|++.+.++--+.+-..- +.+++.+.++.+.+...| ...+|+|. ..+.+|..+..+...+
T Consensus 23 l~~lv~~~~~~Gv~gi~v~GstGE~~~L------s~~Er~~l~~~~~~~~~g---~~pvi~gv~~~~t~~ai~~a~~A~~ 93 (294)
T TIGR02313 23 LRELIEFQIEGGSHAISVGGTSGEPGSL------TLEERKQAIENAIDQIAG---RIPFAPGTGALNHDETLELTKFAEE 93 (294)
T ss_pred HHHHHHHHHHcCCCEEEECccCcccccC------CHHHHHHHHHHHHHHhCC---CCcEEEECCcchHHHHHHHHHHHHH
Q ss_pred CCCCEEEeecCCCC
Q psy2895 232 HNIDILTIGQYLMP 245 (293)
Q Consensus 232 l~~~~i~i~~~~~p 245 (293)
+|++.+-+. +|
T Consensus 94 ~Gad~v~v~---pP 104 (294)
T TIGR02313 94 AGADAAMVI---VP 104 (294)
T ss_pred cCCCEEEEc---Cc
No 377
>PRK12999 pyruvate carboxylase; Reviewed
Probab=81.46 E-value=58 Score=35.05 Aligned_cols=79 Identities=11% Similarity=0.115 Sum_probs=55.2
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcC---CCcCcHHHHHHHHHHcC
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIP---DFRNQINHVLKIFKQAL 164 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~---~~~~~~~e~l~~l~~aG 164 (293)
.+++-.++.++++.+.|+..|.|.---. + .....+.++++.+++.. ++.|++.+- |+.. .-.+..+ ++|
T Consensus 688 ~~~~~~~~~a~~l~~~Ga~~i~ikDt~G--~--l~P~~~~~lv~~lk~~~-~ipi~~H~Hnt~Gla~--an~laA~-~aG 759 (1146)
T PRK12999 688 YDLDYYVDLAKELEKAGAHILAIKDMAG--L--LKPAAAYELVSALKEEV-DLPIHLHTHDTSGNGL--ATYLAAA-EAG 759 (1146)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCccC--C--CCHHHHHHHHHHHHHHc-CCeEEEEeCCCCchHH--HHHHHHH-HhC
Confidence 6788899999999999999887742211 1 12467889999998876 456666552 3322 4456665 689
Q ss_pred CCeeeecccc
Q psy2895 165 PDVLNHNIET 174 (293)
Q Consensus 165 ~~~i~~~les 174 (293)
++.+...+.+
T Consensus 760 ad~vD~av~g 769 (1146)
T PRK12999 760 VDIVDVAVAS 769 (1146)
T ss_pred CCEEEecchh
Confidence 9999887765
No 378
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=81.42 E-value=24 Score=28.76 Aligned_cols=77 Identities=5% Similarity=0.081 Sum_probs=50.0
Q ss_pred CChhHHHH-HHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcC--cHHHHHHHHHHcC
Q psy2895 88 LDIEEPKK-IAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRN--QINHVLKIFKQAL 164 (293)
Q Consensus 88 ~~~eei~~-~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~--~~~e~l~~l~~aG 164 (293)
++.-++.. ..+.+...| ..|+|.|+.+ +.+.++.+.+++.+|++.|....++..+ ..++.++.+.+++
T Consensus 31 v~g~dl~~~l~~~~~~~~-~~ifllG~~~--------~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~ 101 (172)
T PF03808_consen 31 VTGSDLFPDLLRRAEQRG-KRIFLLGGSE--------EVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASG 101 (172)
T ss_pred cCHHHHHHHHHHHHHHcC-CeEEEEeCCH--------HHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcC
Confidence 34333333 334333433 4677888764 3567788899999998777665443222 1377888999999
Q ss_pred CCeeeeccc
Q psy2895 165 PDVLNHNIE 173 (293)
Q Consensus 165 ~~~i~~~le 173 (293)
.|.+-+++-
T Consensus 102 pdiv~vglG 110 (172)
T PF03808_consen 102 PDIVFVGLG 110 (172)
T ss_pred CCEEEEECC
Confidence 999888753
No 379
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=81.25 E-value=40 Score=36.18 Aligned_cols=138 Identities=12% Similarity=0.079 Sum_probs=73.2
Q ss_pred CChhHHHHHHHHHHHC--CCcEEEEeeecCCCC--CCCChhHHHHHHHHHHhhCCCcEEEEEc---C--CCc---Cc-HH
Q psy2895 88 LDIEEPKKIAYTINKL--KLNYVVITSVNRDDL--HDGGSSHFVSCIKHIRKLSTKIKIEILI---P--DFR---NQ-IN 154 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~--G~~~i~l~gg~~~~l--~~~~~~~~~~ll~~i~~~~~~~~i~~~~---~--~~~---~~-~~ 154 (293)
+..++++.++..+.+. |+-.+-..||-.-|. ... .+.=-+-++.+++..|++.+.+.. + |+. ++ ++
T Consensus 550 ~rt~d~~~ia~~~~~~~~g~~s~E~wggAtfd~~~rfl-~EdPwerl~~~r~~~pn~~~qml~Rg~n~vgy~~ypd~vv~ 628 (1143)
T TIGR01235 550 VRTHDLAKIAPTTSHALPNLFSLECWGGATFDVAMRFL-HEDPWERLEDLRKGVPNILFQMLLRGANGVGYTNYPDNVVK 628 (1143)
T ss_pred CCHHHHHHHHHHHHHhcCCceEEEeeCCccHHHHHHHh-cCCHHHHHHHHHHhCCCCceeeeeccccccCccCCCHHHHH
Confidence 6788889898888774 887776666643111 000 011125567788888887766543 1 221 12 24
Q ss_pred HHHHHHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEee------c--CCCHHHHHHHH
Q psy2895 155 HVLKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVG------L--GENDEEILTVI 226 (293)
Q Consensus 155 e~l~~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG------~--gEt~ed~~~~l 226 (293)
..++..++.|+|.+.+ ++.++ ..+.....++.+++. |..+...+.+- . .-|.+.+.+.+
T Consensus 629 ~f~~~~~~~Gidifri--------fD~lN---~~~n~~~~~~~~~~~--g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~a 695 (1143)
T TIGR01235 629 YFVKQAAQGGIDIFRV--------FDSLN---WVENMRVGMDAVAEA--GKVVEAAICYTGDILDPARPKYDLKYYTNLA 695 (1143)
T ss_pred HHHHHHHHcCCCEEEE--------CccCc---CHHHHHHHHHHHHHc--CCEEEEEEEEeccCCCcCCCCCCHHHHHHHH
Confidence 5566667788888764 11122 333344445555555 55444333332 0 12344455555
Q ss_pred HHHHhCCCCEEEe
Q psy2895 227 HDMRNHNIDILTI 239 (293)
Q Consensus 227 ~~l~~l~~~~i~i 239 (293)
+.+.+.|++.+.+
T Consensus 696 k~l~~~Gad~I~i 708 (1143)
T TIGR01235 696 VELEKAGAHILGI 708 (1143)
T ss_pred HHHHHcCCCEEEE
Confidence 5555555555444
No 380
>PRK13753 dihydropteroate synthase; Provisional
Probab=81.16 E-value=39 Score=30.00 Aligned_cols=138 Identities=12% Similarity=0.085 Sum_probs=77.9
Q ss_pred CCCChhHHHHHHHHHHHCCCcEEEEeeecC-CCCCC----CChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHH
Q psy2895 86 DPLDIEEPKKIAYTINKLKLNYVVITSVNR-DDLHD----GGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIF 160 (293)
Q Consensus 86 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~-~~l~~----~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l 160 (293)
..++++.+++.++++.+.|+.-|-+.|... |.... .+..++..+++.+++. +..|.+ |+.. .++++.-
T Consensus 20 ~~~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~--~~~ISI---DT~~--~~va~~a 92 (279)
T PRK13753 20 RRLDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQ--MHRVSI---DSFQ--PETQRYA 92 (279)
T ss_pred CCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhC--CCcEEE---ECCC--HHHHHHH
Confidence 457899999999999999999887765432 21110 1245666888888764 233444 3333 5666666
Q ss_pred HHcCCCeee-eccccchHHHh---h-------cC-CC----------CCHHH--------HHHHHHHHHHhCCCc---ee
Q psy2895 161 KQALPDVLN-HNIETVPRLYK---K-------VR-PG----------SDYKH--------SLNLLKNFKKLYPNI---LT 207 (293)
Q Consensus 161 ~~aG~~~i~-~~less~~~~~---~-------i~-~~----------~~~e~--------~l~~i~~~~~~~pgi---~~ 207 (293)
-++|++.++ ++-...+++.+ + |+ ++ ..+++ ..+.++.+.++ |+ ++
T Consensus 93 l~aGadiINDVsg~~d~~~~~vva~~~~~vVlmH~~~~~~~~~~~~~~~~~dv~~ev~~~l~~~i~~~~~~--Gi~~~~I 170 (279)
T PRK13753 93 LKRGVGYLNDIQGFPDPALYPDIAEADCRLVVMHSAQRDGIATRTGHLRPEDALDEIVRFFEARVSALRRS--GVAADRL 170 (279)
T ss_pred HHcCCCEEEeCCCCCchHHHHHHHHcCCCEEEEecCCCCCCCCcccCCCcchHHHHHHHHHHHHHHHHHHc--CCChhhE
Confidence 678888764 22111223321 1 11 11 01222 22345557777 88 35
Q ss_pred eEeEEeec--CCCHHHHHHHHHHHHhC
Q psy2895 208 KSGIMVGL--GENDEEILTVIHDMRNH 232 (293)
Q Consensus 208 ~~~~ivG~--gEt~ed~~~~l~~l~~l 232 (293)
..+-=+|| +-|.++=.+.+..+.++
T Consensus 171 ilDPGiGF~k~k~~~~n~~ll~~l~~l 197 (279)
T PRK13753 171 ILDPGMGFFLSPAPETSLHVLSNLQKL 197 (279)
T ss_pred EEeCCCCCCCCCChHHHHHHHHhHHHH
Confidence 55655677 44776666666665544
No 381
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=81.07 E-value=17 Score=32.35 Aligned_cols=48 Identities=10% Similarity=0.091 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHHHHHhCCCCEE
Q psy2895 187 DYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHDMRNHNIDIL 237 (293)
Q Consensus 187 ~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~~l~~l~~~~i 237 (293)
+.+++.+.++.+.+..+| ...+|+|. ..+.++..+..+.+++.|++.+
T Consensus 55 s~eEr~~~~~~~~~~~~~---~~~viagvg~~~t~~ai~~a~~a~~~Gad~v 103 (293)
T PRK04147 55 STEEKKQVLEIVAEEAKG---KVKLIAQVGSVNTAEAQELAKYATELGYDAI 103 (293)
T ss_pred CHHHHHHHHHHHHHHhCC---CCCEEecCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 444555555544444222 12344444 2344444555555555555544
No 382
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=80.88 E-value=44 Score=30.42 Aligned_cols=139 Identities=15% Similarity=0.174 Sum_probs=80.5
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCC---------CCCCChhHHHHHHHHHHhhC-CCcEEEE--EcCCCc--CcH
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDD---------LHDGGSSHFVSCIKHIRKLS-TKIKIEI--LIPDFR--NQI 153 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~---------l~~~~~~~~~~ll~~i~~~~-~~~~i~~--~~~~~~--~~~ 153 (293)
-+++++.+.++.+.+.|+..|-|..|.|.. ....+.+.+.++++.+++.. -.+.+++ ...+.. .+.
T Consensus 74 ~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~ 153 (333)
T PRK11815 74 SDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFL 153 (333)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHH
Confidence 468899999988888899988887776411 00123577889999998753 1233332 222211 112
Q ss_pred HHHHHHHHHcCCCeeeeccccchHHHhhcC-------CCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHH
Q psy2895 154 NHVLKIFKQALPDVLNHNIETVPRLYKKVR-------PGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVI 226 (293)
Q Consensus 154 ~e~l~~l~~aG~~~i~~~less~~~~~~i~-------~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l 226 (293)
.+.++.+.++|++.+.+..-+ ...+... ++..+ +.++.+++..+.+++ +..|=-.|.+|..+.+
T Consensus 154 ~~~~~~l~~aG~d~i~vh~Rt--~~~~g~~~~~~~~~~~~~~----~~i~~v~~~~~~iPV---I~nGgI~s~eda~~~l 224 (333)
T PRK11815 154 CDFVDTVAEAGCDTFIVHARK--AWLKGLSPKENREIPPLDY----DRVYRLKRDFPHLTI---EINGGIKTLEEAKEHL 224 (333)
T ss_pred HHHHHHHHHhCCCEEEEcCCc--hhhcCCCccccccCCCcCH----HHHHHHHHhCCCCeE---EEECCcCCHHHHHHHH
Confidence 466788888999998864211 0111111 11223 445566665444543 2223246788887776
Q ss_pred HHHHhCCCCEEEee
Q psy2895 227 HDMRNHNIDILTIG 240 (293)
Q Consensus 227 ~~l~~l~~~~i~i~ 240 (293)
. +++.+.+.
T Consensus 225 ~-----~aDgVmIG 233 (333)
T PRK11815 225 Q-----HVDGVMIG 233 (333)
T ss_pred h-----cCCEEEEc
Confidence 4 47777764
No 383
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=80.88 E-value=17 Score=32.33 Aligned_cols=84 Identities=8% Similarity=-0.011 Sum_probs=52.5
Q ss_pred CCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCC-cEEEEEcCC-CcCcHHHHHHHHHHc
Q psy2895 86 DPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTK-IKIEILIPD-FRNQINHVLKIFKQA 163 (293)
Q Consensus 86 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~-~~i~~~~~~-~~~~~~e~l~~l~~a 163 (293)
..++.+...+.++.+.+.|++.+++.|.... ....+.+.-.++++.+.+...+ +.+-+.+.+ ...+..+.++..+++
T Consensus 17 g~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE-~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~ 95 (292)
T PRK03170 17 GSVDFAALRKLVDYLIANGTDGLVVVGTTGE-SPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKA 95 (292)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCcCCc-cccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHc
Confidence 4689999999999999999999887664421 1222345666777766654332 223222221 111125566677778
Q ss_pred CCCeeee
Q psy2895 164 LPDVLNH 170 (293)
Q Consensus 164 G~~~i~~ 170 (293)
|+|.+.+
T Consensus 96 G~d~v~~ 102 (292)
T PRK03170 96 GADGALV 102 (292)
T ss_pred CCCEEEE
Confidence 9998765
No 384
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=80.86 E-value=16 Score=32.34 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=9.6
Q ss_pred CHHHHHHHHHHHHHhCCCc
Q psy2895 187 DYKHSLNLLKNFKKLYPNI 205 (293)
Q Consensus 187 ~~e~~l~~i~~~~~~~pgi 205 (293)
+.++.++..+.+.++ |.
T Consensus 76 ~~~~ai~~a~~a~~~--Ga 92 (279)
T cd00953 76 NLEESIELARAAKSF--GI 92 (279)
T ss_pred CHHHHHHHHHHHHHc--CC
Confidence 455555555555555 55
No 385
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=80.53 E-value=54 Score=35.23 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=54.1
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcC---CCcCcHHHHHHHHHHc
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIP---DFRNQINHVLKIFKQA 163 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~---~~~~~~~e~l~~l~~a 163 (293)
..+.+-+.+.++++.+.|+..|.|.---. -.....+.++++.+++.. ++.|++.+- |+.. .-.+..+ ++
T Consensus 685 ~~~l~y~~~~ak~l~~~Gad~I~ikDt~G----ll~P~~~~~Lv~~lk~~~-~~pi~~H~Hdt~Gla~--an~laA~-ea 756 (1143)
T TIGR01235 685 KYDLKYYTNLAVELEKAGAHILGIKDMAG----LLKPAAAKLLIKALREKT-DLPIHFHTHDTSGIAV--ASMLAAV-EA 756 (1143)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCcC----CcCHHHHHHHHHHHHHhc-CCeEEEEECCCCCcHH--HHHHHHH-Hh
Confidence 35678888999999999999887732111 112467889999998876 456666542 3322 4455555 68
Q ss_pred CCCeeeecccc
Q psy2895 164 LPDVLNHNIET 174 (293)
Q Consensus 164 G~~~i~~~les 174 (293)
|++.+..++.+
T Consensus 757 Gad~vD~ai~g 767 (1143)
T TIGR01235 757 GVDVVDVAVDS 767 (1143)
T ss_pred CCCEEEecchh
Confidence 99998876654
No 386
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=80.51 E-value=47 Score=30.48 Aligned_cols=136 Identities=14% Similarity=0.122 Sum_probs=0.0
Q ss_pred CCCCChhHHHHHHHHH-------HHCCCcEEEEeeec--------CCCCCCCChhH----------HHHHHHHHHhhCC-
Q psy2895 85 PDPLDIEEPKKIAYTI-------NKLKLNYVVITSVN--------RDDLHDGGSSH----------FVSCIKHIRKLST- 138 (293)
Q Consensus 85 ~~~~~~eei~~~~~~~-------~~~G~~~i~l~gg~--------~~~l~~~~~~~----------~~~ll~~i~~~~~- 138 (293)
++.+|.+||.+++++. .+.|++.|-|.+++ .|....+.-++ +.++++.|++..+
T Consensus 131 p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~ 210 (353)
T cd04735 131 PRELTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDK 210 (353)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhcc
Q ss_pred ------CcEEEEEcCCC------cCcHHHHHHHHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCce
Q psy2895 139 ------KIKIEILIPDF------RNQINHVLKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNIL 206 (293)
Q Consensus 139 ------~~~i~~~~~~~------~~~~~e~l~~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~ 206 (293)
.+.+++...+. ..+..+.++.|.++|+|.++++.=+....-...... .....+.++.+... +++
T Consensus 211 ~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~--~~~~~~~ik~~~~~--~iP 286 (353)
T cd04735 211 HADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDD--NQTIMELVKERIAG--RLP 286 (353)
T ss_pred ccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcc--hHHHHHHHHHHhCC--CCC
Q ss_pred eeEeEEeecCCCHHHHHHHHH
Q psy2895 207 TKSGIMVGLGENDEEILTVIH 227 (293)
Q Consensus 207 ~~~~~ivG~gEt~ed~~~~l~ 227 (293)
+ +.+|--.|.++..+.++
T Consensus 287 V---i~~Ggi~t~e~ae~~l~ 304 (353)
T cd04735 287 L---IAVGSINTPDDALEALE 304 (353)
T ss_pred E---EEECCCCCHHHHHHHHH
No 387
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=80.20 E-value=21 Score=31.39 Aligned_cols=85 Identities=6% Similarity=0.041 Sum_probs=53.5
Q ss_pred CCCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCC-CcEEEEEcCC-CcCcHHHHHHHHHH
Q psy2895 85 PDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLST-KIKIEILIPD-FRNQINHVLKIFKQ 162 (293)
Q Consensus 85 ~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~-~~~i~~~~~~-~~~~~~e~l~~l~~ 162 (293)
...++.+.+.+.++.+.+.|++.+++.|.... ....+.+.-.++++.+.+... .+.+-+.+.. ...+..+.++...+
T Consensus 12 dg~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE-~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~ 90 (281)
T cd00408 12 DGEVDLDALRRLVEFLIEAGVDGLVVLGTTGE-APTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEE 90 (281)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECCCCcc-cccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHH
Confidence 34689999999999999999999887664421 222335666777777766532 2333332221 11112455666777
Q ss_pred cCCCeeee
Q psy2895 163 ALPDVLNH 170 (293)
Q Consensus 163 aG~~~i~~ 170 (293)
+|+|.+.+
T Consensus 91 ~Gad~v~v 98 (281)
T cd00408 91 AGADGVLV 98 (281)
T ss_pred cCCCEEEE
Confidence 89998765
No 388
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=80.15 E-value=21 Score=30.89 Aligned_cols=83 Identities=10% Similarity=-0.014 Sum_probs=61.0
Q ss_pred HHHHHHHcCCCeeeeccccchHHHhhcC--CCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCC
Q psy2895 156 VLKIFKQALPDVLNHNIETVPRLYKKVR--PGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHN 233 (293)
Q Consensus 156 ~l~~l~~aG~~~i~~~less~~~~~~i~--~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~ 233 (293)
....+.++|++.+.++= +.-....-.. ...+.++.+..++.+.+..|..++.+|+=.|+|++.++..++...+.+.|
T Consensus 24 sA~i~e~aG~dai~v~~-s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~~~~l~~aG 102 (240)
T cd06556 24 MAKQFADAGLNVMLVGD-SQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAFELAKTFMRAG 102 (240)
T ss_pred HHHHHHHcCCCEEEECh-HHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHHHHHHHHcC
Confidence 45556678999988751 1111111111 13489999999999988766678899999999889899999999888899
Q ss_pred CCEEEe
Q psy2895 234 IDILTI 239 (293)
Q Consensus 234 ~~~i~i 239 (293)
++-+.+
T Consensus 103 a~gv~i 108 (240)
T cd06556 103 AAGVKI 108 (240)
T ss_pred CcEEEE
Confidence 988877
No 389
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=80.06 E-value=18 Score=32.41 Aligned_cols=77 Identities=12% Similarity=0.106 Sum_probs=55.5
Q ss_pred HHHHHHHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHHHHHhC
Q psy2895 154 NHVLKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHDMRNH 232 (293)
Q Consensus 154 ~e~l~~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~~l~~l 232 (293)
.+.++.+.++|++.+.+.--+.+- ...+.+++.+.++.+++...|- ..+|+|. +.+.++-.+..+..+++
T Consensus 28 ~~lv~~li~~Gv~gi~~~GttGE~------~~Ls~eEr~~v~~~~v~~~~gr---vpviaG~g~~~t~eai~lak~a~~~ 98 (299)
T COG0329 28 RRLVEFLIAAGVDGLVVLGTTGES------PTLTLEERKEVLEAVVEAVGGR---VPVIAGVGSNSTAEAIELAKHAEKL 98 (299)
T ss_pred HHHHHHHHHcCCCEEEECCCCccc------hhcCHHHHHHHHHHHHHHHCCC---CcEEEecCCCcHHHHHHHHHHHHhc
Confidence 567777888899987764222111 1347889999999988873221 2378899 66688889999999999
Q ss_pred CCCEEEe
Q psy2895 233 NIDILTI 239 (293)
Q Consensus 233 ~~~~i~i 239 (293)
|+|-+-+
T Consensus 99 Gad~il~ 105 (299)
T COG0329 99 GADGILV 105 (299)
T ss_pred CCCEEEE
Confidence 9997644
No 390
>PLN02428 lipoic acid synthase
Probab=79.86 E-value=23 Score=32.48 Aligned_cols=49 Identities=12% Similarity=0.197 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHhhCCCcEEEEEc-CCCcC---cHHHHHHHHHHcCCCeeeec
Q psy2895 123 SSHFVSCIKHIRKLSTKIKIEILI-PDFRN---QINHVLKIFKQALPDVLNHN 171 (293)
Q Consensus 123 ~~~~~~ll~~i~~~~~~~~i~~~~-~~~~~---~~~e~l~~l~~aG~~~i~~~ 171 (293)
.+...++++.+++..|++.++... -|+.. ++.+.++.|++.|+|.+.++
T Consensus 230 ye~~Le~L~~ak~~~pGi~tkSg~MvGLGET~Edv~e~l~~Lrelgvd~vtig 282 (349)
T PLN02428 230 YKQSLDVLKHAKESKPGLLTKTSIMLGLGETDEEVVQTMEDLRAAGVDVVTFG 282 (349)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEeEEEecCCCHHHHHHHHHHHHHcCCCEEeec
Confidence 456667777777665555443211 13322 13556666777777777665
No 391
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=79.51 E-value=34 Score=28.35 Aligned_cols=78 Identities=8% Similarity=0.221 Sum_probs=49.3
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcE--EEEEcCCCcCcHHHHHHHHHHcCC
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIK--IEILIPDFRNQINHVLKIFKQALP 165 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~--i~~~~~~~~~~~~e~l~~l~~aG~ 165 (293)
.+++...+.++.+.+.|++.|.+.-.+.+..+. ...-.+.++.+++.. ... +.+++.+ . .+.++.++++|+
T Consensus 8 ~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~--~~~~~~~v~~i~~~~-~~~v~v~lm~~~--~--~~~~~~~~~~ga 80 (210)
T TIGR01163 8 ADFARLGEEVKAVEEAGADWIHVDVMDGHFVPN--LTFGPPVLEALRKYT-DLPIDVHLMVEN--P--DRYIEDFAEAGA 80 (210)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCC--cccCHHHHHHHHhcC-CCcEEEEeeeCC--H--HHHHHHHHHcCC
Confidence 456788889999999999998875222222221 223446777787642 223 4444422 1 557888889999
Q ss_pred Ceeeecc
Q psy2895 166 DVLNHNI 172 (293)
Q Consensus 166 ~~i~~~l 172 (293)
+.+.+..
T Consensus 81 dgv~vh~ 87 (210)
T TIGR01163 81 DIITVHP 87 (210)
T ss_pred CEEEEcc
Confidence 9977643
No 392
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=79.47 E-value=18 Score=31.18 Aligned_cols=143 Identities=10% Similarity=0.100 Sum_probs=79.1
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcC-CCcCcHHHHHHHHHHcCC
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIP-DFRNQINHVLKIFKQALP 165 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~-~~~~~~~e~l~~l~~aG~ 165 (293)
..+.-++++.++...+.|+.+++|.--... ..+.+...+.+++..+. +-|-++.. |..+ .|.++++-.+|.
T Consensus 26 lrd~GDpVelA~~Y~e~GADElvFlDItAs---~~gr~~~~~vv~r~A~~---vfiPltVGGGI~s--~eD~~~ll~aGA 97 (256)
T COG0107 26 LRDAGDPVELAKRYNEEGADELVFLDITAS---SEGRETMLDVVERVAEQ---VFIPLTVGGGIRS--VEDARKLLRAGA 97 (256)
T ss_pred hhhcCChHHHHHHHHHcCCCeEEEEecccc---cccchhHHHHHHHHHhh---ceeeeEecCCcCC--HHHHHHHHHcCC
Confidence 356777899999999999999988655431 12235567788877764 34555554 5554 566777778999
Q ss_pred Ceeeecccc--chHHHhhcCCCCCHHHHHHHHHHHHH---hCCCceeeEeEEeec-CCCHHHHHHHHHHHHhCCCCEEEe
Q psy2895 166 DVLNHNIET--VPRLYKKVRPGSDYKHSLNLLKNFKK---LYPNILTKSGIMVGL-GENDEEILTVIHDMRNHNIDILTI 239 (293)
Q Consensus 166 ~~i~~~les--s~~~~~~i~~~~~~e~~l~~i~~~~~---~~pgi~~~~~~ivG~-gEt~ed~~~~l~~l~~l~~~~i~i 239 (293)
|-++++--. .+++-.++......+-++=.|..-+. ..+++.+ ++.|= ..|.-+..+-.+.+.++|.-.+-+
T Consensus 98 DKVSINsaAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v---~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlL 174 (256)
T COG0107 98 DKVSINSAAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEV---FTHGGREDTGLDAVEWAKEVEELGAGEILL 174 (256)
T ss_pred CeeeeChhHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEE---EecCCCcCCCcCHHHHHHHHHHcCCceEEE
Confidence 999886322 23433333211111111111111111 0011111 11221 344456666677777888887766
Q ss_pred e
Q psy2895 240 G 240 (293)
Q Consensus 240 ~ 240 (293)
+
T Consensus 175 t 175 (256)
T COG0107 175 T 175 (256)
T ss_pred e
Confidence 5
No 393
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=79.40 E-value=43 Score=29.43 Aligned_cols=139 Identities=19% Similarity=0.200 Sum_probs=77.9
Q ss_pred ChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCC---------------ChhHHHHHHHHHHhhCCCcEEEEEc--CCCcC
Q psy2895 89 DIEEPKKIAYTINKLKLNYVVITSVNRDDLHDG---------------GSSHFVSCIKHIRKLSTKIKIEILI--PDFRN 151 (293)
Q Consensus 89 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~---------------~~~~~~~ll~~i~~~~~~~~i~~~~--~~~~~ 151 (293)
+.|.-.+.++.+.+.|+.-+-|.--..+++.+. +.+.+.++++++++. +++.+-+++ +-+..
T Consensus 27 ~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~-~~~p~vlm~Y~N~i~~ 105 (263)
T CHL00200 27 DIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGE-IKAPIVIFTYYNPVLH 105 (263)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC-CCCCEEEEecccHHHH
Confidence 577778888888888998766542221112111 134577778888754 344433433 31111
Q ss_pred -cHHHHHHHHHHcCCCeeeecc---ccchHHHhhcC----------CCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-C
Q psy2895 152 -QINHVLKIFKQALPDVLNHNI---ETVPRLYKKVR----------PGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-G 216 (293)
Q Consensus 152 -~~~e~l~~l~~aG~~~i~~~l---ess~~~~~~i~----------~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-g 216 (293)
-++..++.++++|+|.+-++= |-++++++.++ ...+.+++++.+... -.|+-.... ..|. |
T Consensus 106 ~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~---a~gFIY~vS-~~GvTG 181 (263)
T CHL00200 106 YGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARA---APGCIYLVS-TTGVTG 181 (263)
T ss_pred hCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHh---CCCcEEEEc-CCCCCC
Confidence 126789999999999987643 32344444432 223445554443332 236643333 4566 5
Q ss_pred CC---HHHHHHHHHHHHhC
Q psy2895 217 EN---DEEILTVIHDMRNH 232 (293)
Q Consensus 217 Et---~ed~~~~l~~l~~l 232 (293)
+. .+++.+.+..+++.
T Consensus 182 ~~~~~~~~~~~~i~~ir~~ 200 (263)
T CHL00200 182 LKTELDKKLKKLIETIKKM 200 (263)
T ss_pred CCccccHHHHHHHHHHHHh
Confidence 43 46677777777763
No 394
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=79.00 E-value=12 Score=32.96 Aligned_cols=81 Identities=11% Similarity=0.140 Sum_probs=41.7
Q ss_pred ChhHHHHHHHHHHhhCCCcEEE--EEcC--CCcCcHHHHHHHHHHcCCCeeeecc--ccchHHHhhcCCCCCHHHHHHHH
Q psy2895 122 GSSHFVSCIKHIRKLSTKIKIE--ILIP--DFRNQINHVLKIFKQALPDVLNHNI--ETVPRLYKKVRPGSDYKHSLNLL 195 (293)
Q Consensus 122 ~~~~~~~ll~~i~~~~~~~~i~--~~~~--~~~~~~~e~l~~l~~aG~~~i~~~l--ess~~~~~~i~~~~~~e~~l~~i 195 (293)
+.++-+++++..++..|++-.+ ++.. +..+++.+.++.|+++|+|.+.+|. +-|...+. +.+-.+++++.+.-
T Consensus 195 ~Y~~SL~~L~~~k~~~P~i~TKSgiMlGLGEt~~Ev~e~m~DLr~~gvdilTiGQYlqPS~~Hlp-V~ryv~PeeF~~~~ 273 (306)
T COG0320 195 TYERSLSLLERAKELGPDIPTKSGLMVGLGETDEEVIEVMDDLRSAGVDILTIGQYLQPSRKHLP-VQRYVTPEEFDELE 273 (306)
T ss_pred cHHHHHHHHHHHHHhCCCcccccceeeecCCcHHHHHHHHHHHHHcCCCEEEeccccCCccccCC-ceeccCHHHHHHHH
Confidence 3566677777777776654222 1221 1222245666677778888887763 22322221 22233455554444
Q ss_pred HHHHHhCCCc
Q psy2895 196 KNFKKLYPNI 205 (293)
Q Consensus 196 ~~~~~~~pgi 205 (293)
+.+.+. |+
T Consensus 274 ~~a~~~--GF 281 (306)
T COG0320 274 EVAEEM--GF 281 (306)
T ss_pred HHHHHc--cc
Confidence 445555 55
No 395
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=78.98 E-value=27 Score=30.71 Aligned_cols=52 Identities=15% Similarity=0.202 Sum_probs=27.1
Q ss_pred CChhHHHHHH----HHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEE
Q psy2895 88 LDIEEPKKIA----YTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEI 144 (293)
Q Consensus 88 ~~~eei~~~~----~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~ 144 (293)
.+.++.++.+ +.+.+.|.+ +.++..+. ...+.+.+.++++.+.+.+++ .+.+
T Consensus 105 ~~~~e~~~~~~~~i~~a~~~G~~-v~~~~eda---~r~~~~~l~~~~~~~~~~g~~-~i~l 160 (262)
T cd07948 105 KSITEIIESAVEVIEFVKSKGIE-VRFSSEDS---FRSDLVDLLRVYRAVDKLGVN-RVGI 160 (262)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCe-EEEEEEee---CCCCHHHHHHHHHHHHHcCCC-EEEE
Confidence 4555544444 444555654 33333221 122356777888887776543 4444
No 396
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=78.91 E-value=9.5 Score=33.99 Aligned_cols=75 Identities=15% Similarity=0.152 Sum_probs=44.5
Q ss_pred ChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCee
Q psy2895 89 DIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVL 168 (293)
Q Consensus 89 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i 168 (293)
..++.++.++.+.+.|+.-|++-++.. +.+.+.++.+.+...+|+..+-+ .++... .-.++.|.+.|++++
T Consensus 167 ~~~eAi~Ra~ay~eAGAD~ifv~~~~~------~~~ei~~~~~~~~~~~p~~pl~~-~~~~~~--~~~~~eL~~lG~~~v 237 (285)
T TIGR02320 167 GMEDALKRAEAYAEAGADGIMIHSRKK------DPDEILEFARRFRNHYPRTPLVI-VPTSYY--TTPTDEFRDAGISVV 237 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCC------CHHHHHHHHHHhhhhCCCCCEEE-ecCCCC--CCCHHHHHHcCCCEE
Confidence 466777777777777887777653221 24567777777766555544422 221001 113677777888888
Q ss_pred eecc
Q psy2895 169 NHNI 172 (293)
Q Consensus 169 ~~~l 172 (293)
..+.
T Consensus 238 ~~~~ 241 (285)
T TIGR02320 238 IYAN 241 (285)
T ss_pred EEhH
Confidence 7763
No 397
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=78.91 E-value=57 Score=31.49 Aligned_cols=100 Identities=16% Similarity=0.238 Sum_probs=61.9
Q ss_pred CCCChhHHHHHHHHHHHC-----CCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCc-------Cc-
Q psy2895 86 DPLDIEEPKKIAYTINKL-----KLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFR-------NQ- 152 (293)
Q Consensus 86 ~~~~~eei~~~~~~~~~~-----G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~-------~~- 152 (293)
..++.+++.+.++.+.+. +++++.+..|.|+.+. .+.++.+++.+- .++.+..-++. .+
T Consensus 230 t~L~~~~L~~Ll~~i~~~f~~~~~~~EiTvE~grPd~it-------~e~L~~Lk~~Gv-~RISIGvQS~~d~vLk~igR~ 301 (488)
T PRK08207 230 TSLTAEELERLLEEIYENFPDVKNVKEFTVEAGRPDTIT-------EEKLEVLKKYGV-DRISINPQTMNDETLKAIGRH 301 (488)
T ss_pred cCCCHHHHHHHHHHHHHhccccCCceEEEEEcCCCCCCC-------HHHHHHHHhcCC-CeEEEcCCcCCHHHHHHhCCC
Confidence 346778888887777543 4567778777765442 255666666531 24554321111 11
Q ss_pred -----HHHHHHHHHHcCCCeeeeccccchHHHhhcC-CCCCHHHHHHHHHHHHHh
Q psy2895 153 -----INHVLKIFKQALPDVLNHNIETVPRLYKKVR-PGSDYKHSLNLLKNFKKL 201 (293)
Q Consensus 153 -----~~e~l~~l~~aG~~~i~~~less~~~~~~i~-~~~~~e~~l~~i~~~~~~ 201 (293)
..+.++.++++|++.+++.+= +. |+.+.+++.+.++.+.+.
T Consensus 302 ht~e~v~~ai~~ar~~Gf~~In~DLI--------~GLPgEt~ed~~~tl~~l~~L 348 (488)
T PRK08207 302 HTVEDIIEKFHLAREMGFDNINMDLI--------IGLPGEGLEEVKHTLEEIEKL 348 (488)
T ss_pred CCHHHHHHHHHHHHhCCCCeEEEEEE--------eCCCCCCHHHHHHHHHHHHhc
Confidence 256677777788865554321 12 577999999999999998
No 398
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=78.81 E-value=23 Score=33.75 Aligned_cols=132 Identities=19% Similarity=0.168 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeee
Q psy2895 91 EEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNH 170 (293)
Q Consensus 91 eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~ 170 (293)
++-.+.++.+.+.|++-|.+..-+. +.....+.++.|++.+|+..|-+ .+..+ .+..+.+.++|+|.+.+
T Consensus 223 ~~~~~r~~~L~~aG~d~I~vd~a~g------~~~~~~~~i~~i~~~~~~~~vi~--G~v~t--~~~a~~l~~aGad~i~v 292 (450)
T TIGR01302 223 EFDKERAEALVKAGVDVIVIDSSHG------HSIYVIDSIKEIKKTYPDLDIIA--GNVAT--AEQAKALIDAGADGLRV 292 (450)
T ss_pred hhHHHHHHHHHHhCCCEEEEECCCC------cHhHHHHHHHHHHHhCCCCCEEE--EeCCC--HHHHHHHHHhCCCEEEE
Confidence 4566777888899999988865443 13578899999999877654433 22333 77888888999999976
Q ss_pred cccc-chHHHhhcC-CCC-CHHHHHHHHHHHHHhCCCceeeEeEEe-ecCCCHHHHHHHHHHHHhCCCCEEEeecC
Q psy2895 171 NIET-VPRLYKKVR-PGS-DYKHSLNLLKNFKKLYPNILTKSGIMV-GLGENDEEILTVIHDMRNHNIDILTIGQY 242 (293)
Q Consensus 171 ~les-s~~~~~~i~-~~~-~~e~~l~~i~~~~~~~pgi~~~~~~iv-G~gEt~ed~~~~l~~l~~l~~~~i~i~~~ 242 (293)
++=+ +=-.-+.+. -+. ...-..++.+.+++. ++++ |. |=-.|..|+...+ .+|.+.+-+...
T Consensus 293 g~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~--~vpv----iadGGi~~~~di~kAl----a~GA~~V~~G~~ 358 (450)
T TIGR01302 293 GIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQS--GIPV----IADGGIRYSGDIVKAL----AAGADAVMLGSL 358 (450)
T ss_pred CCCCCcCCccceecCCCccHHHHHHHHHHHHhhc--CCeE----EEeCCCCCHHHHHHHH----HcCCCEEEECch
Confidence 6421 111111111 121 334445555556666 6653 44 1135666765554 479988877633
No 399
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=78.76 E-value=53 Score=30.09 Aligned_cols=147 Identities=14% Similarity=0.167 Sum_probs=77.6
Q ss_pred CCCCChhHHHHHHHHH-------HHCCCcEEEEeeecC--------CCCCC------C----ChhHHHHHHHHHHhhC-C
Q psy2895 85 PDPLDIEEPKKIAYTI-------NKLKLNYVVITSVNR--------DDLHD------G----GSSHFVSCIKHIRKLS-T 138 (293)
Q Consensus 85 ~~~~~~eei~~~~~~~-------~~~G~~~i~l~gg~~--------~~l~~------~----~~~~~~~ll~~i~~~~-~ 138 (293)
++.++.+||.+.++.. .+.|++.|-|.|++. |.... . ....+.++++.|++.. +
T Consensus 124 p~~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~ 203 (353)
T cd02930 124 PRELSEEEIEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGE 203 (353)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCC
Confidence 3568888887765544 456999888877531 11100 0 1356778999998875 3
Q ss_pred Cc--EEEEEcCCCc----C--cHHHHHHHHHHcCCCeeeeccccc-hHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeE
Q psy2895 139 KI--KIEILIPDFR----N--QINHVLKIFKQALPDVLNHNIETV-PRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKS 209 (293)
Q Consensus 139 ~~--~i~~~~~~~~----~--~~~e~l~~l~~aG~~~i~~~less-~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~ 209 (293)
++ .+++...+.. + +..+.++.|.++|+|.++++.-.. +.+ ...........++...+.+++.. +++
T Consensus 204 d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~-~~~~~~~~~~~~~~~~~~ik~~v-~iP--- 278 (353)
T cd02930 204 DFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARV-PTIATSVPRGAFAWATAKLKRAV-DIP--- 278 (353)
T ss_pred CceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCC-ccccccCCchhhHHHHHHHHHhC-CCC---
Confidence 44 3444322221 1 123567788889999998853211 111 01110111223556666776652 332
Q ss_pred eEEe-ecCCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 210 GIMV-GLGENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 210 ~~iv-G~gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
++. |---+.+++.+. +++=.+|.+.+.
T Consensus 279 -Vi~~G~i~~~~~a~~~---i~~g~~D~V~~g 306 (353)
T cd02930 279 -VIASNRINTPEVAERL---LADGDADMVSMA 306 (353)
T ss_pred -EEEcCCCCCHHHHHHH---HHCCCCChhHhh
Confidence 222 223455555444 344557777664
No 400
>KOG0564|consensus
Probab=78.75 E-value=23 Score=33.80 Aligned_cols=124 Identities=17% Similarity=0.162 Sum_probs=78.0
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCC------CCChhHHHHHHHHHHhhCCC-cEEEEE-cC-CCcC----cHH
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLH------DGGSSHFVSCIKHIRKLSTK-IKIEIL-IP-DFRN----QIN 154 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~------~~~~~~~~~ll~~i~~~~~~-~~i~~~-~~-~~~~----~~~ 154 (293)
++.+.|.+..+.+.+.|++.|.-.-|++|.=. ..++.+-.+|++.|++.+.+ +.|.+. .| +..+ +..
T Consensus 89 ~~~~~Id~aLe~a~~~GirNILALRGDpP~g~d~~~~~e~gF~yA~DLVr~Irs~YGDyF~IgVAgYPEghpe~~~~~~~ 168 (590)
T KOG0564|consen 89 MPKEMIDKALEQAKALGIRNILALRGDPPIGQDKWVEEEGGFRYAVDLVRYIRSKYGDYFCIGVAGYPEGHPEAPSHDYL 168 (590)
T ss_pred ccHHHHHHHHHHHHHhCchhhhhhcCCCCCCccccccccCCchhHHHHHHHHHHHhCCeEEEEeccCCCCCcCCcccchh
Confidence 67888888889999999999877777753111 12467889999999998755 244442 24 3221 012
Q ss_pred HHHHHHHH---cCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec--CCCHHHHHHHHH
Q psy2895 155 HVLKIFKQ---ALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL--GENDEEILTVIH 227 (293)
Q Consensus 155 e~l~~l~~---aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~--gEt~ed~~~~l~ 227 (293)
..|..|++ ||.|.+-- . | =+..|.+++-++.+|++ |+ +.-++.|+ .++...+....+
T Consensus 169 ~Dl~yLk~KvdaGaDFIiT-----Q-----l--FYd~e~flkfv~~cR~~--gi--~~PIvPGIMPI~~Y~sf~R~~k 230 (590)
T KOG0564|consen 169 ADLPYLKEKVDAGADFIIT-----Q-----L--FYDVETFLKFVKDCRAA--GI--NVPIVPGIMPIQSYRSFLRIAK 230 (590)
T ss_pred hhhHHHHHhhcccchhhhh-----h-----h--hcCHHHHHHHHHHHHHh--CC--CCCcccccccchhHHHHHHHHH
Confidence 23444443 45543210 1 1 24678888888899999 88 45677777 666666555443
No 401
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=78.61 E-value=20 Score=32.01 Aligned_cols=66 Identities=9% Similarity=0.155 Sum_probs=43.8
Q ss_pred HHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeeecc
Q psy2895 95 KIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNHNI 172 (293)
Q Consensus 95 ~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~l 172 (293)
+++.++.+.|+..|.+. + + +.+.+.+.++.+++..+++.+.+ .|=++ .+.+..+.+.|+|.+.++-
T Consensus 207 eea~eA~~~GaD~I~LD---n--~---~~e~l~~av~~~~~~~~~i~leA--sGGIt--~~ni~~ya~tGvD~Isvgs 272 (288)
T PRK07428 207 EQVQEALEYGADIIMLD---N--M---PVDLMQQAVQLIRQQNPRVKIEA--SGNIT--LETIRAVAETGVDYISSSA 272 (288)
T ss_pred HHHHHHHHcCCCEEEEC---C--C---CHHHHHHHHHHHHhcCCCeEEEE--ECCCC--HHHHHHHHHcCCCEEEEch
Confidence 34445557788877763 1 2 25788888888876555443333 32244 7788888999999998763
No 402
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=78.56 E-value=21 Score=31.91 Aligned_cols=65 Identities=6% Similarity=-0.023 Sum_probs=44.0
Q ss_pred HHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeeecc
Q psy2895 96 IAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNHNI 172 (293)
Q Consensus 96 ~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~l 172 (293)
++.++.+.|+.-|.|- .+ +.+.+.+.++.+++..|++.+.+ +|-++ .+.+..+.+.|+|.+..+.
T Consensus 211 ea~eal~~gaDiI~LD-----nm---~~e~vk~av~~~~~~~~~v~iea--SGGI~--~~ni~~yA~tGvD~Is~ga 275 (289)
T PRK07896 211 QLDEVLAEGAELVLLD-----NF---PVWQTQEAVQRRDARAPTVLLES--SGGLT--LDTAAAYAETGVDYLAVGA 275 (289)
T ss_pred HHHHHHHcCCCEEEeC-----CC---CHHHHHHHHHHHhccCCCEEEEE--ECCCC--HHHHHHHHhcCCCEEEeCh
Confidence 4455566788777662 23 25788888887776665544433 33344 7789999999999998864
No 403
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=78.52 E-value=38 Score=30.18 Aligned_cols=81 Identities=20% Similarity=0.299 Sum_probs=52.2
Q ss_pred HHHHHHHHHcC-CCeeeeccccchHHHh-hcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHh
Q psy2895 154 NHVLKIFKQAL-PDVLNHNIETVPRLYK-KVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRN 231 (293)
Q Consensus 154 ~e~l~~l~~aG-~~~i~~~less~~~~~-~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~ 231 (293)
.+.++.+.++| +|.+.+++-. +..-. ...-..+.+...+.++.+++.. ++ -+++-+.-+.+|..+.++.+.+
T Consensus 107 ~~~a~~~~~aG~~D~iElN~~c-P~~~~gg~~~~~~~~~~~eiv~~vr~~~-~~----pv~vKl~~~~~~~~~~a~~l~~ 180 (301)
T PRK07259 107 AEVAEKLSKAPNVDAIELNISC-PNVKHGGMAFGTDPELAYEVVKAVKEVV-KV----PVIVKLTPNVTDIVEIAKAAEE 180 (301)
T ss_pred HHHHHHHhccCCcCEEEEECCC-CCCCCCccccccCHHHHHHHHHHHHHhc-CC----CEEEEcCCCchhHHHHHHHHHH
Confidence 45677777888 9998887632 11100 0011235677888888888873 22 2344444456788899999999
Q ss_pred CCCCEEEee
Q psy2895 232 HNIDILTIG 240 (293)
Q Consensus 232 l~~~~i~i~ 240 (293)
.|++.+.+.
T Consensus 181 ~G~d~i~~~ 189 (301)
T PRK07259 181 AGADGLSLI 189 (301)
T ss_pred cCCCEEEEE
Confidence 999987663
No 404
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=78.52 E-value=24 Score=32.35 Aligned_cols=84 Identities=13% Similarity=0.257 Sum_probs=49.1
Q ss_pred HHHHHHHHcCCCeeeecc-cc--chHHHhhc-C-C----CCCH----HHHHHHHHHHHHhCC-CceeeEeEEee----c-
Q psy2895 155 HVLKIFKQALPDVLNHNI-ET--VPRLYKKV-R-P----GSDY----KHSLNLLKNFKKLYP-NILTKSGIMVG----L- 215 (293)
Q Consensus 155 e~l~~l~~aG~~~i~~~l-es--s~~~~~~i-~-~----~~~~----e~~l~~i~~~~~~~p-gi~~~~~~ivG----~- 215 (293)
+.+++.+++|.|.|.+.. -+ ....+.-. + | +.+. .-.+++++.+++..+ ++.+. +=++ .
T Consensus 141 ~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~--iRi~~~D~~~ 218 (353)
T cd02930 141 RCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIII--YRLSMLDLVE 218 (353)
T ss_pred HHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEE--EEecccccCC
Confidence 445566778999987632 21 02222211 1 1 2243 345566777777652 33332 1111 1
Q ss_pred -CCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 216 -GENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 216 -gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
|.+.++..+.++.+.+.|+|.+.++
T Consensus 219 ~g~~~~e~~~i~~~Le~~G~d~i~vs 244 (353)
T cd02930 219 GGSTWEEVVALAKALEAAGADILNTG 244 (353)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 4688888999999999999998884
No 405
>TIGR00620 sporelyase spore photoproduct lyase. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=78.39 E-value=38 Score=28.47 Aligned_cols=103 Identities=12% Similarity=0.028 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeeeccccchHHHhhcC-CCCCHHHHHHHHHHHHHhCC
Q psy2895 125 HFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNHNIETVPRLYKKVR-PGSDYKHSLNLLKNFKKLYP 203 (293)
Q Consensus 125 ~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~less~~~~~~i~-~~~~~e~~l~~i~~~~~~~p 203 (293)
.+.++++...+. |+..+++-|= +.+ .+.+..+.-.|-.++..++.+ +++-+..- +.-+.++++++++.+.++
T Consensus 11 ~l~~~I~ff~~~-~~~~lef~TK-~~n--v~~Ll~l~~~~~t~~rfSlnp-~~Ii~~~E~~T~sl~~Rl~Aa~k~a~a-- 83 (199)
T TIGR00620 11 TLKRAIEHFGQS-DFGKLRFVTK-FHH--VDHLLDAKHNGKTRFRFSINA-DYVIKNFEPGTSPLDKRIEAAVKVAKA-- 83 (199)
T ss_pred hHHHHHHHHccC-CCcEEEEEEc-ccc--hhhHhcCCCCCCEEEEEEeCH-HHHHHHhcCCCCCHHHHHHHHHHHHHc--
Confidence 466777777654 4667887651 122 334444444454455555533 45555544 345899999999999999
Q ss_pred CceeeEeE--EeecCCCHHHHHHHHHHHH-hCCC
Q psy2895 204 NILTKSGI--MVGLGENDEEILTVIHDMR-NHNI 234 (293)
Q Consensus 204 gi~~~~~~--ivG~gEt~ed~~~~l~~l~-~l~~ 234 (293)
|++++..+ |+=+-...++..++++.+. .+..
T Consensus 84 Gy~Vg~~~~PIi~~egW~e~Y~~l~~~l~~~l~~ 117 (199)
T TIGR00620 84 GYPLGFIIAPIYIHEGWKEGYRNLLEKLDEALPQ 117 (199)
T ss_pred CCeEEEEeeceEeeCChHHHHHHHHHHHHHhCCH
Confidence 99876554 3333556777788887775 4553
No 406
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=78.22 E-value=54 Score=29.85 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=28.2
Q ss_pred CCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhh
Q psy2895 86 DPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKL 136 (293)
Q Consensus 86 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~ 136 (293)
...+.+.-++.+++|.+.|..-|.++=.+ . .-.+.+.+|+++
T Consensus 31 ~T~Dv~aTv~QI~~L~~aG~dIVRvtv~~---~------e~A~A~~~Ik~~ 72 (361)
T COG0821 31 DTADVEATVAQIKALERAGCDIVRVTVPD---M------EAAEALKEIKQR 72 (361)
T ss_pred CcccHHHHHHHHHHHHHcCCCEEEEecCC---H------HHHHHHHHHHHh
Confidence 44577888888899999999877765322 1 234556666664
No 407
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=78.15 E-value=42 Score=28.56 Aligned_cols=118 Identities=16% Similarity=0.235 Sum_probs=75.6
Q ss_pred HHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeee--ccc
Q psy2895 96 IAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNH--NIE 173 (293)
Q Consensus 96 ~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~--~le 173 (293)
+++.+.+.|...+.+.|--+ ...+...++..++....+.+.++... +.++..+.++++|++.+.+ +.+
T Consensus 72 e~~ma~~aGAd~~tV~g~A~-------~~TI~~~i~~A~~~~~~v~iDl~~~~---~~~~~~~~l~~~gvd~~~~H~g~D 141 (217)
T COG0269 72 EARMAFEAGADWVTVLGAAD-------DATIKKAIKVAKEYGKEVQIDLIGVW---DPEQRAKWLKELGVDQVILHRGRD 141 (217)
T ss_pred HHHHHHHcCCCEEEEEecCC-------HHHHHHHHHHHHHcCCeEEEEeecCC---CHHHHHHHHHHhCCCEEEEEeccc
Confidence 45667788999998887754 35788888888887544455554321 1256788888899998654 432
Q ss_pred cchHHHhhcCCCCCH-HHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 174 TVPRLYKKVRPGSDY-KHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 174 ss~~~~~~i~~~~~~-e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
. +. .+.++ .+-++.++.+.+. |+.+.. -| |=+++++ ..+..++++.+-+.
T Consensus 142 ~--q~-----~G~~~~~~~l~~ik~~~~~--g~~vAV---aG-GI~~~~i----~~~~~~~~~ivIvG 192 (217)
T COG0269 142 A--QA-----AGKSWGEDDLEKIKKLSDL--GAKVAV---AG-GITPEDI----PLFKGIGADIVIVG 192 (217)
T ss_pred H--hh-----cCCCccHHHHHHHHHhhcc--CceEEE---ec-CCCHHHH----HHHhcCCCCEEEEC
Confidence 1 11 24455 5667777777776 765532 22 5666665 45567888876665
No 408
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=78.13 E-value=58 Score=30.18 Aligned_cols=139 Identities=12% Similarity=0.125 Sum_probs=70.7
Q ss_pred CCCChhHHHHHHHHHHHC--CCcEEEEeeec-CCCCCCCChhHHHHHHHHHHhhCCCcEE--EEEcCCCcCcHHHHHHHH
Q psy2895 86 DPLDIEEPKKIAYTINKL--KLNYVVITSVN-RDDLHDGGSSHFVSCIKHIRKLSTKIKI--EILIPDFRNQINHVLKIF 160 (293)
Q Consensus 86 ~~~~~eei~~~~~~~~~~--G~~~i~l~gg~-~~~l~~~~~~~~~~ll~~i~~~~~~~~i--~~~~~~~~~~~~e~l~~l 160 (293)
..++.+.+-.++..+... |.. +.+-. .+++ .+.+++.++++.+++..|+..| ++...... +......
T Consensus 152 G~Lp~~KV~~~ia~~R~~~~g~~---~iSP~~h~di--~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~---~~~~~~~ 223 (368)
T PF01645_consen 152 GHLPGEKVTEEIARIRGVPPGVD---LISPPPHHDI--YSIEDLAQLIEELRELNPGKPVGVKLVAGRGV---EDIAAGA 223 (368)
T ss_dssp -EE-GGG--HHHHHHHTS-TT-----EE--SS-TT---SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTH---HHHHHHH
T ss_pred ceechhhchHHHHHHhCCCCCCc---cccCCCCCCc--CCHHHHHHHHHHHHhhCCCCcEEEEECCCCcH---HHHHHhh
Confidence 357788888888777654 333 22221 1222 3578999999999998866544 44442212 2333336
Q ss_pred HHcCCCeeee-cccc----ch-HHHhhcCCCCCHH-HHHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHHHHHhC
Q psy2895 161 KQALPDVLNH-NIET----VP-RLYKKVRPGSDYK-HSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHDMRNH 232 (293)
Q Consensus 161 ~~aG~~~i~~-~les----s~-~~~~~i~~~~~~e-~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~~l~~l 232 (293)
.++|+|.|.+ +.++ ++ ...+.+. ..++ -..++.+.+.+. |++-.+.+++.= --|..|+...+ .+
T Consensus 224 ~~ag~D~ItIDG~~GGTGAap~~~~d~~G--lP~~~~l~~a~~~L~~~--glr~~V~Li~sGgl~t~~dv~kal----aL 295 (368)
T PF01645_consen 224 AKAGADFITIDGAEGGTGAAPLTSMDHVG--LPTEYALARAHQALVKN--GLRDRVSLIASGGLRTGDDVAKAL----AL 295 (368)
T ss_dssp HHTT-SEEEEE-TT---SSEECCHHHHC-----HHHHHHHHHHHHHCT--T-CCCSEEEEESS--SHHHHHHHH----HC
T ss_pred hhccCCEEEEeCCCCCCCCCchhHHhhCC--CcHHHHHHHHHHHHHHc--CCCCceEEEEeCCccCHHHHHHHH----hc
Confidence 7799999998 4454 23 3344333 2333 344666777777 886444555533 45666765554 48
Q ss_pred CCCEEEee
Q psy2895 233 NIDILTIG 240 (293)
Q Consensus 233 ~~~~i~i~ 240 (293)
|.|.+.+.
T Consensus 296 GAD~v~ig 303 (368)
T PF01645_consen 296 GADAVYIG 303 (368)
T ss_dssp T-SEEE-S
T ss_pred CCCeeEec
Confidence 88887764
No 409
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=78.06 E-value=50 Score=29.39 Aligned_cols=140 Identities=8% Similarity=0.075 Sum_probs=77.6
Q ss_pred HHHHHCCCcEEEEeeecC------CCCCCCChhHHHHHHHHHHhhCCCcEEEEEc-CCCcC--cHHHHHHHHHHcCCCee
Q psy2895 98 YTINKLKLNYVVITSVNR------DDLHDGGSSHFVSCIKHIRKLSTKIKIEILI-PDFRN--QINHVLKIFKQALPDVL 168 (293)
Q Consensus 98 ~~~~~~G~~~i~l~gg~~------~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~-~~~~~--~~~e~l~~l~~aG~~~i 168 (293)
+-+.+.|++-+.++|+.. ||+.....+.+.+.++.|.... ++.+.+=. .|+.+ +....++.+.++|+..+
T Consensus 32 ~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~-~lPv~vD~dtGfG~~~nvartV~~~~~aG~agi 110 (289)
T COG2513 32 LLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAV-DLPVLVDIDTGFGEALNVARTVRELEQAGAAGI 110 (289)
T ss_pred HHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhc-CCceEEeccCCCCcHHHHHHHHHHHHHcCccee
Confidence 444567999999887642 3442233556666666666543 33344422 24443 34678888889999887
Q ss_pred eeccccchHHHhhcCC--CCCHHHHHHHHHHHHHhCCC--ceeeEeE-EeecCCCHHHHHHHHHHHHhCCCCEEEe
Q psy2895 169 NHNIETVPRLYKKVRP--GSDYKHSLNLLKNFKKLYPN--ILTKSGI-MVGLGENDEEILTVIHDMRNHNIDILTI 239 (293)
Q Consensus 169 ~~~less~~~~~~i~~--~~~~e~~l~~i~~~~~~~pg--i~~~~~~-ivG~gEt~ed~~~~l~~l~~l~~~~i~i 239 (293)
++-=|..++..-.+.. =.+.++..+.|+.++++.++ +.+.+-. -++. +-.++-++-...-.+-|.|.|..
T Consensus 111 ~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~-~~ld~AI~Ra~AY~eAGAD~if~ 185 (289)
T COG2513 111 HIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLV-EGLDDAIERAQAYVEAGADAIFP 185 (289)
T ss_pred eeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHh-ccHHHHHHHHHHHHHcCCcEEcc
Confidence 7642222222222211 13788899999999888653 2221100 0111 22444445555556788887654
No 410
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=78.05 E-value=25 Score=29.27 Aligned_cols=114 Identities=9% Similarity=0.124 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeee
Q psy2895 91 EEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNH 170 (293)
Q Consensus 91 eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~ 170 (293)
++..+.++.+.+.|++.+.+. ..+.+...+...++.+++.....++.+.. .+.++...++|++.+++
T Consensus 21 ~~~~~~~~~~~~~gv~~v~lr------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~a~~~gad~vh~ 87 (212)
T PRK00043 21 RDLLEVVEAALEGGVTLVQLR------EKGLDTRERLELARALKELCRRYGVPLIV-------NDRVDLALAVGADGVHL 87 (212)
T ss_pred ccHHHHHHHHHhcCCCEEEEe------CCCCCHHHHHHHHHHHHHHHHHhCCeEEE-------eChHHHHHHcCCCEEec
Q ss_pred ccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHHHHHhCCCCEEEeecCCC
Q psy2895 171 NIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHDMRNHNIDILTIGQYLM 244 (293)
Q Consensus 171 ~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~~l~~l~~~~i~i~~~~~ 244 (293)
+ ..+.....++..+.. +.++|. -.|.++..+.. +.|+|.+.++++++
T Consensus 88 ~---------------~~~~~~~~~~~~~~~--------~~~~g~~~~t~~e~~~a~----~~gaD~v~~~~~~~ 135 (212)
T PRK00043 88 G---------------QDDLPVADARALLGP--------DAIIGLSTHTLEEAAAAL----AAGADYVGVGPIFP 135 (212)
T ss_pred C---------------cccCCHHHHHHHcCC--------CCEEEEeCCCHHHHHHHh----HcCCCEEEECCccC
No 411
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=78.05 E-value=38 Score=28.03 Aligned_cols=112 Identities=15% Similarity=0.052 Sum_probs=68.3
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCe
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDV 167 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~ 167 (293)
.+.++..+.++.+.+.|++.+-++--+. .-.++++.+++..+.+.+...+ ++. .+.++...++|.+.
T Consensus 21 ~~~~~~~~~~~~~~~~Gv~~vqlr~k~~---------~~~e~~~~~~~~~~~~~~g~gt--vl~--~d~~~~A~~~gAdg 87 (187)
T PRK07455 21 PDLELGLQMAEAVAAGGMRLIEITWNSD---------QPAELISQLREKLPECIIGTGT--ILT--LEDLEEAIAAGAQF 87 (187)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCC---------CHHHHHHHHHHhCCCcEEeEEE--EEc--HHHHHHHHHcCCCE
Confidence 4789999999999999999988864332 1235555565555443333222 232 46778878899999
Q ss_pred eeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 168 LNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 168 i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
++.+.-. . +.++..+.. ++ ..++| -.|.+|+.+. .+.|.+++.++
T Consensus 88 v~~p~~~--------------~---~~~~~~~~~--~~----~~i~G-~~t~~e~~~A----~~~Gadyv~~F 132 (187)
T PRK07455 88 CFTPHVD--------------P---ELIEAAVAQ--DI----PIIPG-ALTPTEIVTA----WQAGASCVKVF 132 (187)
T ss_pred EECCCCC--------------H---HHHHHHHHc--CC----CEEcC-cCCHHHHHHH----HHCCCCEEEEC
Confidence 8765321 1 112233333 44 34566 5677775444 34788888875
No 412
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=78.01 E-value=20 Score=28.06 Aligned_cols=71 Identities=11% Similarity=0.092 Sum_probs=49.0
Q ss_pred HHHHHHHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec--CCCHHHHHHHHHHHHh
Q psy2895 154 NHVLKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL--GENDEEILTVIHDMRN 231 (293)
Q Consensus 154 ~e~l~~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~--gEt~ed~~~~l~~l~~ 231 (293)
++.++..++.+++.+.++. +. +++.+...+.++.+++. |+.- .-+++|= .-..+|+.+.-..+++
T Consensus 42 e~~v~aa~~~~adiVglS~---------l~-~~~~~~~~~~~~~l~~~--gl~~-~~vivGG~~vi~~~d~~~~~~~l~~ 108 (134)
T TIGR01501 42 EEFIKAAIETKADAILVSS---------LY-GHGEIDCKGLRQKCDEA--GLEG-ILLYVGGNLVVGKQDFPDVEKRFKE 108 (134)
T ss_pred HHHHHHHHHcCCCEEEEec---------cc-ccCHHHHHHHHHHHHHC--CCCC-CEEEecCCcCcChhhhHHHHHHHHH
Confidence 6788888888888887752 11 44666677788888888 8742 2356663 1345677666677899
Q ss_pred CCCCEE
Q psy2895 232 HNIDIL 237 (293)
Q Consensus 232 l~~~~i 237 (293)
+|++.+
T Consensus 109 ~Gv~~v 114 (134)
T TIGR01501 109 MGFDRV 114 (134)
T ss_pred cCCCEE
Confidence 998864
No 413
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=78.01 E-value=31 Score=28.41 Aligned_cols=73 Identities=10% Similarity=-0.050 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCc--HHHHHHHHHHcCCCe
Q psy2895 90 IEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQ--INHVLKIFKQALPDV 167 (293)
Q Consensus 90 ~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~--~~e~l~~l~~aG~~~ 167 (293)
.|-+.+..+.+...| ..++|.|+.+ +.+.++.+.+++.+|++.|..+ .++.+. .++.++.+.+++.|.
T Consensus 34 ~dl~~~l~~~~~~~~-~~vfllG~~~--------~v~~~~~~~l~~~yP~l~i~g~-~g~f~~~~~~~i~~~I~~s~~di 103 (177)
T TIGR00696 34 PDLMEELCQRAGKEK-LPIFLYGGKP--------DVLQQLKVKLIKEYPKLKIVGA-FGPLEPEERKAALAKIARSGAGI 103 (177)
T ss_pred HHHHHHHHHHHHHcC-CeEEEECCCH--------HHHHHHHHHHHHHCCCCEEEEE-CCCCChHHHHHHHHHHHHcCCCE
Confidence 344445555555666 4577777764 3567788888899998877665 433321 145788899999999
Q ss_pred eeecc
Q psy2895 168 LNHNI 172 (293)
Q Consensus 168 i~~~l 172 (293)
+-+++
T Consensus 104 l~Vgl 108 (177)
T TIGR00696 104 VFVGL 108 (177)
T ss_pred EEEEc
Confidence 88875
No 414
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=77.84 E-value=58 Score=30.04 Aligned_cols=81 Identities=10% Similarity=0.047 Sum_probs=48.7
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEc-CCCcCcHHHHHHHHHHcCCC
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILI-PDFRNQINHVLKIFKQALPD 166 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~-~~~~~~~~e~l~~l~~aG~~ 166 (293)
.+++.+.+.++.+.+.|+..|.+.--.. ...+..+.++++.+++.. ++.+.+.. +++.--+...+..+ ++|++
T Consensus 139 ~~~~~l~~~~~~~~~~Ga~~i~l~DT~G----~~~P~~v~~lv~~l~~~~-~v~l~~H~HNd~GlA~ANalaA~-~aGa~ 212 (365)
T TIGR02660 139 ADPDFLVELAEVAAEAGADRFRFADTVG----ILDPFSTYELVRALRQAV-DLPLEMHAHNDLGMATANTLAAV-RAGAT 212 (365)
T ss_pred CCHHHHHHHHHHHHHcCcCEEEEcccCC----CCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHHH-HhCCC
Confidence 4678888888888888888776632111 112467888888887764 24455533 22211114456666 57888
Q ss_pred eeeecccc
Q psy2895 167 VLNHNIET 174 (293)
Q Consensus 167 ~i~~~les 174 (293)
.+..++.+
T Consensus 213 ~vd~tl~G 220 (365)
T TIGR02660 213 HVNTTVNG 220 (365)
T ss_pred EEEEEeec
Confidence 88765543
No 415
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=77.72 E-value=41 Score=28.16 Aligned_cols=133 Identities=11% Similarity=0.087 Sum_probs=80.4
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEE--cC-CCcCc--HHHHHHHHH
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEIL--IP-DFRNQ--INHVLKIFK 161 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~--~~-~~~~~--~~e~l~~l~ 161 (293)
..+.+++.+.++++.+.|+..+++.-+ .+...-+.++.. .+.+... .| +.... ....++...
T Consensus 13 ~~t~~~i~~~~~~a~~~~~~av~v~p~-----------~v~~~~~~l~~~--~~~v~~~~~fp~g~~~~~~k~~eve~A~ 79 (203)
T cd00959 13 DATEEDIRKLCDEAKEYGFAAVCVNPC-----------FVPLAREALKGS--GVKVCTVIGFPLGATTTEVKVAEAREAI 79 (203)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcHH-----------HHHHHHHHcCCC--CcEEEEEEecCCCCCcHHHHHHHHHHHH
Confidence 457899999999999988888876411 121112222221 2334332 24 32111 122244444
Q ss_pred HcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 162 QALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 162 ~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
+.|.|.+.+-+.-. .+ ..+.++..++-+..+++...|+.+.. |+.. .-+.+++....+...++|.|++-.+
T Consensus 80 ~~GAdevdvv~~~g-----~~-~~~~~~~~~~ei~~v~~~~~g~~lkv--I~e~~~l~~~~i~~a~ria~e~GaD~IKTs 151 (203)
T cd00959 80 ADGADEIDMVINIG-----AL-KSGDYEAVYEEIAAVVEACGGAPLKV--ILETGLLTDEEIIKACEIAIEAGADFIKTS 151 (203)
T ss_pred HcCCCEEEEeecHH-----HH-hCCCHHHHHHHHHHHHHhcCCCeEEE--EEecCCCCHHHHHHHHHHHHHhCCCEEEcC
Confidence 57999987654321 01 13356667777777777655666554 5666 4567889999999999999998773
No 416
>smart00642 Aamy Alpha-amylase domain.
Probab=77.72 E-value=7.6 Score=31.58 Aligned_cols=36 Identities=11% Similarity=0.198 Sum_probs=29.4
Q ss_pred hhcCCC-CCHHHHHHHHHHHHHhCCCceeeEeEEeec-CC
Q psy2895 180 KKVRPG-SDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GE 217 (293)
Q Consensus 180 ~~i~~~-~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gE 217 (293)
..+.+. .+.++..+.++.+|+. |+.+-.++++.+ +.
T Consensus 60 ~~i~~~~Gt~~d~~~lv~~~h~~--Gi~vilD~V~NH~~~ 97 (166)
T smart00642 60 KQIDPRFGTMEDFKELVDAAHAR--GIKVILDVVINHTSD 97 (166)
T ss_pred CCCCcccCCHHHHHHHHHHHHHC--CCEEEEEECCCCCCC
Confidence 344433 3789999999999999 999999999988 55
No 417
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=77.65 E-value=16 Score=32.39 Aligned_cols=66 Identities=5% Similarity=-0.016 Sum_probs=43.0
Q ss_pred HHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeeecc
Q psy2895 95 KIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNHNI 172 (293)
Q Consensus 95 ~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~l 172 (293)
+++.++.+.|+..|.+- . + +.+.+.+.++.++...|++ .+..+|=++ .+.+..+.+.|+|.+.+|-
T Consensus 193 eea~~A~~~GaDiI~LD---n--~---~~e~l~~~v~~~~~~~~~~--~ieAsGgIt--~~ni~~ya~~GvD~IsvG~ 258 (273)
T PRK05848 193 EEAKNAMNAGADIVMCD---N--M---SVEEIKEVVAYRNANYPHV--LLEASGNIT--LENINAYAKSGVDAISSGS 258 (273)
T ss_pred HHHHHHHHcCCCEEEEC---C--C---CHHHHHHHHHHhhccCCCe--EEEEECCCC--HHHHHHHHHcCCCEEEeCh
Confidence 34455567788866652 2 1 2567888888766545543 333332234 7889999999999998863
No 418
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=77.63 E-value=50 Score=29.15 Aligned_cols=141 Identities=11% Similarity=0.120 Sum_probs=78.4
Q ss_pred HHHHHHHCCCcEEEEeeecC-C----CC-CCCChhHHHHHHHHHHhhCCCcEEEEE-cCCCcC---cHHHHHHHHHHcCC
Q psy2895 96 IAYTINKLKLNYVVITSVNR-D----DL-HDGGSSHFVSCIKHIRKLSTKIKIEIL-IPDFRN---QINHVLKIFKQALP 165 (293)
Q Consensus 96 ~~~~~~~~G~~~i~l~gg~~-~----~l-~~~~~~~~~~ll~~i~~~~~~~~i~~~-~~~~~~---~~~e~l~~l~~aG~ 165 (293)
.++.+.+.|+..+.+. .+. + .+ ...+.+...+.++.+++.+ +.+... ..|+.. +..+.++.+++.++
T Consensus 125 ~l~~Lk~aG~~~v~i~-~E~~~~~~~~i~~~~s~~~~~~ai~~l~~~G--i~v~~~~i~Gl~et~~d~~~~~~~l~~l~~ 201 (296)
T TIGR00433 125 QAKRLKDAGLDYYNHN-LDTSQEFYSNIISTHTYDDRVDTLENAKKAG--LKVCSGGIFGLGETVEDRIGLALALANLPP 201 (296)
T ss_pred HHHHHHHcCCCEEEEc-ccCCHHHHhhccCCCCHHHHHHHHHHHHHcC--CEEEEeEEEeCCCCHHHHHHHHHHHHhCCC
Confidence 3456677899877553 221 1 11 1224566777788887763 333321 113222 23566777778888
Q ss_pred Ceeeecccc-chHH-HhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHH-HHhCCCCEEEeecC
Q psy2895 166 DVLNHNIET-VPRL-YKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHD-MRNHNIDILTIGQY 242 (293)
Q Consensus 166 ~~i~~~les-s~~~-~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~-l~~l~~~~i~i~~~ 242 (293)
+.+.+..=. .+.. +... +.-+.+++++.+..++...|.-.+ .++-+.. ..+.+.... +-..|++.+.+..|
T Consensus 202 ~~i~l~~l~p~~gT~l~~~-~~~s~~~~~~~ia~~r~~lp~~~i----~~~~~~~-~~~~~~~~~~~l~~G~n~i~~g~~ 275 (296)
T TIGR00433 202 ESVPINFLVKIKGTPLADN-KELSADDALKTIALARIIMPKAEI----RLAGGRE-VNMRELQQAMCFMAGANSIFVGDY 275 (296)
T ss_pred CEEEeeeeEEcCCCccCCC-CCCCHHHHHHHHHHHHHHCCcceE----EEeCCcc-hhhhhhHHHHHHHhcCceEEEcCc
Confidence 877553212 1111 1122 244788999999999998775433 2222222 233344333 56788998888877
Q ss_pred CCC
Q psy2895 243 LMP 245 (293)
Q Consensus 243 ~~p 245 (293)
+.-
T Consensus 276 ~~~ 278 (296)
T TIGR00433 276 LTT 278 (296)
T ss_pred ccC
Confidence 754
No 419
>KOG3111|consensus
Probab=77.57 E-value=41 Score=28.15 Aligned_cols=79 Identities=5% Similarity=0.084 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhC---CCcEEEEEcCCCcCcHHHHHHHHHHcCCC
Q psy2895 90 IEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLS---TKIKIEILIPDFRNQINHVLKIFKQALPD 166 (293)
Q Consensus 90 ~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~---~~~~i~~~~~~~~~~~~e~l~~l~~aG~~ 166 (293)
...+.+++.++.+.|+..+++---+....++..+ =.-+++.+++.. +-+.++++.. .. ++.++.+..||.+
T Consensus 16 fanL~~e~~~~l~~GadwlHlDVMDg~FVpNiT~--G~pvV~slR~~~~~~~ffD~HmMV~--~P--eq~V~~~a~agas 89 (224)
T KOG3111|consen 16 FANLAAECKKMLDAGADWLHLDVMDGHFVPNITF--GPPVVESLRKHTGADPFFDVHMMVE--NP--EQWVDQMAKAGAS 89 (224)
T ss_pred hHHHHHHHHHHHHcCCCeEEEeeecccccCCccc--chHHHHHHHhccCCCcceeEEEeec--CH--HHHHHHHHhcCcc
Confidence 4567788888899999998775433211122111 013455666542 2245666541 11 6688889999999
Q ss_pred eeeecccc
Q psy2895 167 VLNHNIET 174 (293)
Q Consensus 167 ~i~~~les 174 (293)
.+++..|.
T Consensus 90 ~~tfH~E~ 97 (224)
T KOG3111|consen 90 LFTFHYEA 97 (224)
T ss_pred eEEEEEee
Confidence 99887664
No 420
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=77.43 E-value=42 Score=28.15 Aligned_cols=79 Identities=9% Similarity=0.225 Sum_probs=49.1
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCC-CcEEEEEcCCCcCcHHHHHHHHHHcCCC
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLST-KIKIEILIPDFRNQINHVLKIFKQALPD 166 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~-~~~i~~~~~~~~~~~~e~l~~l~~aG~~ 166 (293)
.++-...+.++.+.+.|++.|.+.-.+.+..+. .....+.++.+++..+ ...+.+++.+. .+.++.+.++|++
T Consensus 13 ~~~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~--~~~~~~~~~~i~~~~~~~~~v~l~v~d~----~~~i~~~~~~g~d 86 (220)
T PRK05581 13 ADFARLGEEVKAVEAAGADWIHVDVMDGHFVPN--LTIGPPVVEAIRKVTKLPLDVHLMVENP----DRYVPDFAKAGAD 86 (220)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCccCCcCCC--cCcCHHHHHHHHhcCCCcEEEEeeeCCH----HHHHHHHHHcCCC
Confidence 445677788889999999999884322211111 1224567778876553 33466665431 4456777789999
Q ss_pred eeeecc
Q psy2895 167 VLNHNI 172 (293)
Q Consensus 167 ~i~~~l 172 (293)
.+.+..
T Consensus 87 ~v~vh~ 92 (220)
T PRK05581 87 IITFHV 92 (220)
T ss_pred EEEEee
Confidence 976543
No 421
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=77.19 E-value=18 Score=32.47 Aligned_cols=89 Identities=9% Similarity=0.006 Sum_probs=44.9
Q ss_pred ChhHHHHHHHHHHhhCCCcEEEEEc-CCCcCc---HHHHHHHHHHcCCCeeeecccc--chHHHhhcCCCCCHHHHHHHH
Q psy2895 122 GSSHFVSCIKHIRKLSTKIKIEILI-PDFRNQ---INHVLKIFKQALPDVLNHNIET--VPRLYKKVRPGSDYKHSLNLL 195 (293)
Q Consensus 122 ~~~~~~~ll~~i~~~~~~~~i~~~~-~~~~~~---~~e~l~~l~~aG~~~i~~~les--s~~~~~~i~~~~~~e~~l~~i 195 (293)
+.++..++++.+++..|++.+.... -|+..+ ..+.++.|++.|++.++++.-- +...+ .|.+-.+++++-..=
T Consensus 189 t~e~~Le~l~~ak~~~pgi~~~TgiIVGlGETeee~~etl~~Lrelg~d~v~igqYl~p~~~~~-~v~~~~~p~~f~~~~ 267 (302)
T TIGR00510 189 TYRWSLKLLERAKEYLPNLPTKSGIMVGLGETNEEIKQTLKDLRDHGVTMVTLGQYLRPSRRHL-PVKRYVSPEEFDYYR 267 (302)
T ss_pred CHHHHHHHHHHHHHhCCCCeecceEEEECCCCHHHHHHHHHHHHhcCCCEEEeecccCCCCCCC-ccccCCCHHHHHHHH
Confidence 4566777777777776654333211 134222 3566777777788887775322 22222 233223444443333
Q ss_pred HHHHHhCCCc-eeeEeEEe
Q psy2895 196 KNFKKLYPNI-LTKSGIMV 213 (293)
Q Consensus 196 ~~~~~~~pgi-~~~~~~iv 213 (293)
+.+.+. |+ .+.++=+|
T Consensus 268 ~~a~~~--gf~~v~~~p~v 284 (302)
T TIGR00510 268 SVALEM--GFLHAACGPFV 284 (302)
T ss_pred HHHHHc--CChheEecccc
Confidence 344455 66 34444443
No 422
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=76.90 E-value=18 Score=34.95 Aligned_cols=79 Identities=10% Similarity=0.085 Sum_probs=55.6
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCC
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPD 166 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~ 166 (293)
..++++..+.++.+.+.|++.|.+..-+. ......+.++.+++.+|+ .+.+......+ .+.++.+.++|+|
T Consensus 237 av~~~~~~~ra~~Lv~aGvd~i~vd~a~g------~~~~~~~~i~~ir~~~~~-~~~V~aGnV~t--~e~a~~li~aGAd 307 (502)
T PRK07107 237 GINTRDYAERVPALVEAGADVLCIDSSEG------YSEWQKRTLDWIREKYGD-SVKVGAGNVVD--REGFRYLAEAGAD 307 (502)
T ss_pred ccChhhHHHHHHHHHHhCCCeEeecCccc------ccHHHHHHHHHHHHhCCC-CceEEeccccC--HHHHHHHHHcCCC
Confidence 35566788899999999999988762221 135678999999998763 23333222334 7788888899999
Q ss_pred eeeecccc
Q psy2895 167 VLNHNIET 174 (293)
Q Consensus 167 ~i~~~les 174 (293)
.+.++.-+
T Consensus 308 ~I~vg~g~ 315 (502)
T PRK07107 308 FVKVGIGG 315 (502)
T ss_pred EEEECCCC
Confidence 99886654
No 423
>PLN02591 tryptophan synthase
Probab=76.84 E-value=50 Score=28.80 Aligned_cols=117 Identities=18% Similarity=0.194 Sum_probs=65.0
Q ss_pred HHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcE-EEEEcCCCcCcHHHHHHHHHHcCCCeee-eccc
Q psy2895 96 IAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIK-IEILIPDFRNQINHVLKIFKQALPDVLN-HNIE 173 (293)
Q Consensus 96 ~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~-i~~~~~~~~~~~~e~l~~l~~aG~~~i~-~~le 173 (293)
-++++.+.|++.+.+ ||++ .+...++.+.+++. ++. |-+.+|.+. ++.++.+.+..-..+. ++..
T Consensus 98 F~~~~~~aGv~Gvii-----pDLP---~ee~~~~~~~~~~~--gl~~I~lv~Ptt~---~~ri~~ia~~~~gFIY~Vs~~ 164 (250)
T PLN02591 98 FMATIKEAGVHGLVV-----PDLP---LEETEALRAEAAKN--GIELVLLTTPTTP---TERMKAIAEASEGFVYLVSST 164 (250)
T ss_pred HHHHHHHcCCCEEEe-----CCCC---HHHHHHHHHHHHHc--CCeEEEEeCCCCC---HHHHHHHHHhCCCcEEEeeCC
Confidence 345556678887765 4564 46666777777765 333 444445332 4556665554333332 2332
Q ss_pred c-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecC-CCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 174 T-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLG-ENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 174 s-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~g-Et~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
+ +-. +....++..+.++.+++. +..-+++|+| .|.+++.. +.+.|.|-+-+.
T Consensus 165 GvTG~------~~~~~~~~~~~i~~vk~~-----~~~Pv~vGFGI~~~e~v~~----~~~~GADGvIVG 218 (250)
T PLN02591 165 GVTGA------RASVSGRVESLLQELKEV-----TDKPVAVGFGISKPEHAKQ----IAGWGADGVIVG 218 (250)
T ss_pred CCcCC------CcCCchhHHHHHHHHHhc-----CCCceEEeCCCCCHHHHHH----HHhcCCCEEEEC
Confidence 2 100 112234556667777775 2345688995 44777654 466888887775
No 424
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=76.77 E-value=47 Score=28.38 Aligned_cols=98 Identities=12% Similarity=0.226 Sum_probs=59.7
Q ss_pred ChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhC-CCcEEEEEcCCCcCcHHHHHHHHHHcCCCe
Q psy2895 89 DIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLS-TKIKIEILIPDFRNQINHVLKIFKQALPDV 167 (293)
Q Consensus 89 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~-~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~ 167 (293)
+...+.++++.+.+.|++.+++-=-+....|+.. -=..+++.+++.. -.+.++++.. +.+..++.+.++|++.
T Consensus 14 D~~~l~~el~~~~~agad~iH~DVMDghFVPNiT--fGp~~v~~l~~~t~~p~DvHLMV~----~p~~~i~~fa~agad~ 87 (220)
T COG0036 14 DFARLGEELKALEAAGADLIHIDVMDGHFVPNIT--FGPPVVKALRKITDLPLDVHLMVE----NPDRYIEAFAKAGADI 87 (220)
T ss_pred CHhHHHHHHHHHHHcCCCEEEEeccCCCcCCCcc--cCHHHHHHHhhcCCCceEEEEecC----CHHHHHHHHHHhCCCE
Confidence 4556777888888899999888544421112211 1124455555531 1256777652 1166889999999999
Q ss_pred eeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCcee
Q psy2895 168 LNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILT 207 (293)
Q Consensus 168 i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~ 207 (293)
+++-.|.++ ...+.++.+|+. |...
T Consensus 88 It~H~E~~~-------------~~~r~i~~Ik~~--G~ka 112 (220)
T COG0036 88 ITFHAEATE-------------HIHRTIQLIKEL--GVKA 112 (220)
T ss_pred EEEEeccCc-------------CHHHHHHHHHHc--CCeE
Confidence 998877422 133556667776 6643
No 425
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=76.60 E-value=25 Score=31.86 Aligned_cols=87 Identities=13% Similarity=0.095 Sum_probs=60.1
Q ss_pred HHHHHHHHHcCCCeeeecccc-chHHHhhc-CC--CCCHHHHHHHHHHHHHhCCCceeeEeEEeec--CCCHHHHHHHHH
Q psy2895 154 NHVLKIFKQALPDVLNHNIET-VPRLYKKV-RP--GSDYKHSLNLLKNFKKLYPNILTKSGIMVGL--GENDEEILTVIH 227 (293)
Q Consensus 154 ~e~l~~l~~aG~~~i~~~les-s~~~~~~i-~~--~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~--gEt~ed~~~~l~ 227 (293)
.+..+.+.++|+|.+.++.-. ...+.+.- .. -.+++...+.++.+++.. ++++++-+-+|. .++.++..+.++
T Consensus 70 ~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~-~~PVsvKiR~g~~~~~~~~~~~~~~~ 148 (318)
T TIGR00742 70 AKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAV-NIPVTVKHRIGIDPLDSYEFLCDFVE 148 (318)
T ss_pred HHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHh-CCCeEEEEecCCCCcchHHHHHHHHH
Confidence 345566666788988887744 34443321 11 136777888888888753 677877777787 345577788888
Q ss_pred HHHhCCCCEEEeec
Q psy2895 228 DMRNHNIDILTIGQ 241 (293)
Q Consensus 228 ~l~~l~~~~i~i~~ 241 (293)
.+.+.|++.+.++.
T Consensus 149 ~l~~~G~~~itvHg 162 (318)
T TIGR00742 149 IVSGKGCQNFIVHA 162 (318)
T ss_pred HHHHcCCCEEEEeC
Confidence 89999999998873
No 426
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=76.57 E-value=58 Score=29.34 Aligned_cols=139 Identities=14% Similarity=0.066 Sum_probs=81.6
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCC-----C----CCCChhHHHHHHHHHHhhCC-CcEEEEEcC--CCcCcHHH
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDD-----L----HDGGSSHFVSCIKHIRKLST-KIKIEILIP--DFRNQINH 155 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~-----l----~~~~~~~~~~ll~~i~~~~~-~~~i~~~~~--~~~~~~~e 155 (293)
-+++++.+.++.+.+.|+..|-|..|.|.. . ...+.+.+.++++.+++..+ .+.+++-.. ....+..+
T Consensus 72 ~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~ 151 (319)
T TIGR00737 72 SDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVE 151 (319)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHH
Confidence 468999999999988999999887775410 0 01234677889999987542 123333211 11111257
Q ss_pred HHHHHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCC
Q psy2895 156 VLKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNID 235 (293)
Q Consensus 156 ~l~~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~ 235 (293)
.++.+.++|++.+.+..-+... +++..-.++.++.+++.. ++++ +..|=-.|.+++.+.+ +.-|.+
T Consensus 152 ~a~~l~~~G~d~i~vh~r~~~~-------~~~~~~~~~~i~~i~~~~-~ipv---i~nGgI~~~~da~~~l---~~~gad 217 (319)
T TIGR00737 152 AARIAEDAGAQAVTLHGRTRAQ-------GYSGEANWDIIARVKQAV-RIPV---IGNGDIFSPEDAKAML---ETTGCD 217 (319)
T ss_pred HHHHHHHhCCCEEEEEcccccc-------cCCCchhHHHHHHHHHcC-CCcE---EEeCCCCCHHHHHHHH---HhhCCC
Confidence 7888889999999874222111 111112356677777653 3332 2223246777766655 446888
Q ss_pred EEEee
Q psy2895 236 ILTIG 240 (293)
Q Consensus 236 ~i~i~ 240 (293)
.+.+.
T Consensus 218 ~Vmig 222 (319)
T TIGR00737 218 GVMIG 222 (319)
T ss_pred EEEEC
Confidence 87775
No 427
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=76.51 E-value=36 Score=30.00 Aligned_cols=107 Identities=13% Similarity=0.134 Sum_probs=62.7
Q ss_pred ChhHHHHHHHHHHHCCCcEEEEeeecCC----CCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcC
Q psy2895 89 DIEEPKKIAYTINKLKLNYVVITSVNRD----DLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQAL 164 (293)
Q Consensus 89 ~~eei~~~~~~~~~~G~~~i~l~gg~~~----~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG 164 (293)
+.+.+++.|+.+.+.|+..+....-.|. ++.....+.+.. ++++.+. .++.+.+ +..+ .+.++.+.+.
T Consensus 39 ~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~-l~~~~~~---~Gl~~~t-e~~d--~~~~~~l~~~- 110 (266)
T PRK13398 39 SEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKI-LKEVGDK---YNLPVVT-EVMD--TRDVEEVADY- 110 (266)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHH-HHHHHHH---cCCCEEE-eeCC--hhhHHHHHHh-
Confidence 6888999999999999885443332221 111111233333 3333332 3455544 2233 4567777776
Q ss_pred CCeeeecccc--chHHHhhcC---------CC-C-CHHHHHHHHHHHHHhCCCc
Q psy2895 165 PDVLNHNIET--VPRLYKKVR---------PG-S-DYKHSLNLLKNFKKLYPNI 205 (293)
Q Consensus 165 ~~~i~~~les--s~~~~~~i~---------~~-~-~~e~~l~~i~~~~~~~pgi 205 (293)
++.+.++.-. +..+++.+. ++ . +.++|+.+++.++.. |-
T Consensus 111 vd~~kIga~~~~n~~LL~~~a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~--Gn 162 (266)
T PRK13398 111 ADMLQIGSRNMQNFELLKEVGKTKKPILLKRGMSATLEEWLYAAEYIMSE--GN 162 (266)
T ss_pred CCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHhc--CC
Confidence 8899886533 345666554 12 2 678888888888776 54
No 428
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=76.51 E-value=25 Score=31.05 Aligned_cols=82 Identities=11% Similarity=0.065 Sum_probs=50.8
Q ss_pred CCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCC-cCcHHHHHHHHHHcC
Q psy2895 86 DPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDF-RNQINHVLKIFKQAL 164 (293)
Q Consensus 86 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~-~~~~~e~l~~l~~aG 164 (293)
..++.+.+.+.++.+.+.|++.+++.|.... ....+.+.-.++++.+.+... ++-+.++.. ..+..+..+..+++|
T Consensus 15 g~iD~~~~~~li~~l~~~Gv~Gl~~~GstGE-~~~Lt~eEr~~l~~~~~~~~~--~vi~gvg~~~~~~ai~~a~~a~~~G 91 (279)
T cd00953 15 NKIDKEKFKKHCENLISKGIDYVFVAGTTGL-GPSLSFQEKLELLKAYSDITD--KVIFQVGSLNLEESIELARAAKSFG 91 (279)
T ss_pred CCcCHHHHHHHHHHHHHcCCcEEEEcccCCC-cccCCHHHHHHHHHHHHHHcC--CEEEEeCcCCHHHHHHHHHHHHHcC
Confidence 5688999999999999999999888665421 122235666677776665432 232222211 111245666667789
Q ss_pred CCeeee
Q psy2895 165 PDVLNH 170 (293)
Q Consensus 165 ~~~i~~ 170 (293)
+|.+.+
T Consensus 92 ad~v~v 97 (279)
T cd00953 92 IYAIAS 97 (279)
T ss_pred CCEEEE
Confidence 998754
No 429
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=76.42 E-value=30 Score=29.97 Aligned_cols=76 Identities=13% Similarity=0.140 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeeec--cccc---hHHHhhcCCCC---CHHHHHHHHHH
Q psy2895 126 FVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNHN--IETV---PRLYKKVRPGS---DYKHSLNLLKN 197 (293)
Q Consensus 126 ~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~--less---~~~~~~i~~~~---~~e~~l~~i~~ 197 (293)
+.+.++.+++.+-+ .|++..+... +..+..+.+.+.|+....++ .... .+... +.+.. ..+...++++.
T Consensus 17 l~~~l~~~a~~Gf~-~VEl~~~~~~-~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~ 93 (258)
T PRK09997 17 FLARFEKAAQCGFR-GVEFMFPYDY-DIEELKQVLASNKLEHTLHNLPAGDWAAGERGIA-CIPGREEEFRDGVAAAIRY 93 (258)
T ss_pred HHHHHHHHHHhCCC-EEEEcCCCCC-CHHHHHHHHHHcCCcEEEEcCCCCccccCcCccc-cCCCcHHHHHHHHHHHHHH
Confidence 66777778776432 6777655222 23666677778888754322 2211 11110 12221 23446677777
Q ss_pred HHHhCCCce
Q psy2895 198 FKKLYPNIL 206 (293)
Q Consensus 198 ~~~~~pgi~ 206 (293)
+++. |.+
T Consensus 94 a~~l--ga~ 100 (258)
T PRK09997 94 ARAL--GNK 100 (258)
T ss_pred HHHh--CCC
Confidence 8877 775
No 430
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=76.25 E-value=27 Score=31.83 Aligned_cols=87 Identities=11% Similarity=0.226 Sum_probs=53.8
Q ss_pred HHHHHHHHHcCCCeeeecc-cc--chHHHhhc-C-C----CCCHHH----HHHHHHHHHHhCC-CceeeEeEEe----ec
Q psy2895 154 NHVLKIFKQALPDVLNHNI-ET--VPRLYKKV-R-P----GSDYKH----SLNLLKNFKKLYP-NILTKSGIMV----GL 215 (293)
Q Consensus 154 ~e~l~~l~~aG~~~i~~~l-es--s~~~~~~i-~-~----~~~~e~----~l~~i~~~~~~~p-gi~~~~~~iv----G~ 215 (293)
.+..++.+++|.|.|.+.. -+ ....+.-. + | +.+.+. .+++++.++++.+ ++.+...+=. --
T Consensus 152 ~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~ 231 (338)
T cd04733 152 AHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRG 231 (338)
T ss_pred HHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCC
Confidence 3456677789999997642 11 12222221 1 1 235544 4567788887753 4555444321 11
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 216 GENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 216 gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
|-|.++..+.++.+.+.|++++.++
T Consensus 232 g~~~eea~~ia~~Le~~Gvd~iev~ 256 (338)
T cd04733 232 GFTEEDALEVVEALEEAGVDLVELS 256 (338)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEec
Confidence 5688898999999999999999875
No 431
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=76.09 E-value=14 Score=32.04 Aligned_cols=74 Identities=14% Similarity=0.201 Sum_probs=49.1
Q ss_pred hhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcC-CCcCcHHHHHHHHHHcCCCee
Q psy2895 90 IEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIP-DFRNQINHVLKIFKQALPDVL 168 (293)
Q Consensus 90 ~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~-~~~~~~~e~l~~l~~aG~~~i 168 (293)
..++.+.++.+.+.|++++++..-+.... ....-.++++.+++.. .+.+... |+.+ .+.++.+.+.|++.+
T Consensus 29 ~~d~~~~a~~~~~~G~~~i~i~dl~~~~~---~~~~~~~~i~~i~~~~---~ipv~~~GGi~s--~~~~~~~l~~Ga~~V 100 (253)
T PRK02083 29 AGDPVELAKRYNEEGADELVFLDITASSE---GRDTMLDVVERVAEQV---FIPLTVGGGIRS--VEDARRLLRAGADKV 100 (253)
T ss_pred cCCHHHHHHHHHHcCCCEEEEEeCCcccc---cCcchHHHHHHHHHhC---CCCEEeeCCCCC--HHHHHHHHHcCCCEE
Confidence 34667777778889999999987664211 1234457777777653 3444443 5555 667777777999998
Q ss_pred eec
Q psy2895 169 NHN 171 (293)
Q Consensus 169 ~~~ 171 (293)
.++
T Consensus 101 iig 103 (253)
T PRK02083 101 SIN 103 (253)
T ss_pred EEC
Confidence 876
No 432
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=76.04 E-value=30 Score=30.72 Aligned_cols=84 Identities=4% Similarity=-0.069 Sum_probs=51.4
Q ss_pred CCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCC-CcEEEEEcCCCcCcHHHHHHHHHHcC
Q psy2895 86 DPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLST-KIKIEILIPDFRNQINHVLKIFKQAL 164 (293)
Q Consensus 86 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~-~~~i~~~~~~~~~~~~e~l~~l~~aG 164 (293)
..++.+.+.+.++.+.+.|++.+++.|.... ....+.+.-.++++.+.+... ++.|-+.+.....+..+..+...++|
T Consensus 16 g~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE-~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~t~~~i~~a~~a~~~G 94 (289)
T cd00951 16 GSFDEDAYRAHVEWLLSYGAAALFAAGGTGE-FFSLTPDEYAQVVRAAVEETAGRVPVLAGAGYGTATAIAYAQAAEKAG 94 (289)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcCCcC-cccCCHHHHHHHHHHHHHHhCCCCCEEEecCCCHHHHHHHHHHHHHhC
Confidence 4689999999999999999999888765431 122235566677776655432 22232222211111245566677789
Q ss_pred CCeeee
Q psy2895 165 PDVLNH 170 (293)
Q Consensus 165 ~~~i~~ 170 (293)
+|.+.+
T Consensus 95 ad~v~~ 100 (289)
T cd00951 95 ADGILL 100 (289)
T ss_pred CCEEEE
Confidence 998754
No 433
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=76.03 E-value=20 Score=30.94 Aligned_cols=125 Identities=10% Similarity=0.116 Sum_probs=70.7
Q ss_pred HHHHHHHHHHH-CCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcC-CCcCcHHHHHHHHHHcCCCeee
Q psy2895 92 EPKKIAYTINK-LKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIP-DFRNQINHVLKIFKQALPDVLN 169 (293)
Q Consensus 92 ei~~~~~~~~~-~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~-~~~~~~~e~l~~l~~aG~~~i~ 169 (293)
+..+.++.+.+ .|++++++.--+.. ..+...-.++++.|.+.. .+.+... |+.+ .|.++.+-++|++++-
T Consensus 32 dp~~~a~~~~~~~Ga~~l~ivDLd~a---~~~~~~n~~~I~~i~~~~---~~pi~vGGGIrs--~e~v~~~l~~Ga~kvv 103 (234)
T PRK13587 32 SAEESIAYYSQFECVNRIHIVDLIGA---KAQHAREFDYIKSLRRLT---TKDIEVGGGIRT--KSQIMDYFAAGINYCI 103 (234)
T ss_pred CHHHHHHHHHhccCCCEEEEEECccc---ccCCcchHHHHHHHHhhc---CCeEEEcCCcCC--HHHHHHHHHCCCCEEE
Confidence 45557777777 69999988644321 111223346777776632 2344333 5555 7788888899999998
Q ss_pred ecccc--chHHHhhcCCCCCHHHHHHHHHHHHHhCCC-ceeeEeEEee------c-CCCHHHHHHHHHHHHhCCCCEEEe
Q psy2895 170 HNIET--VPRLYKKVRPGSDYKHSLNLLKNFKKLYPN-ILTKSGIMVG------L-GENDEEILTVIHDMRNHNIDILTI 239 (293)
Q Consensus 170 ~~les--s~~~~~~i~~~~~~e~~l~~i~~~~~~~pg-i~~~~~~ivG------~-gEt~ed~~~~l~~l~~l~~~~i~i 239 (293)
++-++ ++++++ .+.+.+|+ +.++.+.-=| - ..+.-+..+.++.+.++++..+-+
T Consensus 104 igt~a~~~~~~l~----------------~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~ 167 (234)
T PRK13587 104 VGTKGIQDTDWLK----------------EMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIY 167 (234)
T ss_pred ECchHhcCHHHHH----------------HHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEE
Confidence 87544 233333 22333321 2233343222 1 234445677777778888876555
Q ss_pred e
Q psy2895 240 G 240 (293)
Q Consensus 240 ~ 240 (293)
.
T Consensus 168 t 168 (234)
T PRK13587 168 T 168 (234)
T ss_pred e
Confidence 4
No 434
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=75.98 E-value=63 Score=29.49 Aligned_cols=137 Identities=12% Similarity=0.117 Sum_probs=0.0
Q ss_pred CCCCChhHHHHH-------HHHHHHCCCcEEEEeeec-------------------CCCCCCCChhHHHHHHHHHHhhCC
Q psy2895 85 PDPLDIEEPKKI-------AYTINKLKLNYVVITSVN-------------------RDDLHDGGSSHFVSCIKHIRKLST 138 (293)
Q Consensus 85 ~~~~~~eei~~~-------~~~~~~~G~~~i~l~gg~-------------------~~~l~~~~~~~~~~ll~~i~~~~~ 138 (293)
++.++.++|.+. |+.+.+.|+..|-|.++. ..++..+ ...+.++++.|++..+
T Consensus 139 p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR-~rf~~eii~air~~vg 217 (338)
T cd02933 139 PRALTTEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENR-ARFLLEVVDAVAEAIG 217 (338)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHh-hhHHHHHHHHHHHHhC
Q ss_pred C--cEEEEEcCC---------CcCcHHHHHHHHHHcCCCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCce
Q psy2895 139 K--IKIEILIPD---------FRNQINHVLKIFKQALPDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNIL 206 (293)
Q Consensus 139 ~--~~i~~~~~~---------~~~~~~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~ 206 (293)
. +.+++...+ ...+..+.++.|.++|+|.++++.=. .... ....++..+.++++
T Consensus 218 ~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~---------~~~~~~~~~~ik~~----- 283 (338)
T cd02933 218 ADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNP---------EDQPPDFLDFLRKA----- 283 (338)
T ss_pred CCceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcc---------cccchHHHHHHHHH-----
Q ss_pred eeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEe
Q psy2895 207 TKSGIMVGLGENDEEILTVIHDMRNHNIDILTI 239 (293)
Q Consensus 207 ~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i 239 (293)
+.+-+|+.=+=+ .....+.+++-+.|.|.+
T Consensus 284 ~~ipvi~~G~i~---~~~a~~~l~~g~~D~V~~ 313 (338)
T cd02933 284 FKGPLIAAGGYD---AESAEAALADGKADLVAF 313 (338)
T ss_pred cCCCEEEECCCC---HHHHHHHHHcCCCCEEEe
No 435
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=75.82 E-value=20 Score=31.84 Aligned_cols=66 Identities=8% Similarity=0.034 Sum_probs=44.7
Q ss_pred HHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeeec
Q psy2895 94 KKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNHN 171 (293)
Q Consensus 94 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~ 171 (293)
+++++++.+.|+..|.+-. + +.+.+.+.++.+++..+++.+.+ +|=++ .+.+..+.+.|+|.+..+
T Consensus 198 leea~ea~~~GaDiI~lDn-----~---~~e~l~~~v~~l~~~~~~~~lea--sGGI~--~~ni~~ya~~GvD~is~g 263 (277)
T TIGR01334 198 IEQALTVLQASPDILQLDK-----F---TPQQLHHLHERLKFFDHIPTLAA--AGGIN--PENIADYIEAGIDLFITS 263 (277)
T ss_pred HHHHHHHHHcCcCEEEECC-----C---CHHHHHHHHHHHhccCCCEEEEE--ECCCC--HHHHHHHHhcCCCEEEeC
Confidence 3445555677888777642 2 25788888888876555544444 33244 778999999999999876
No 436
>KOG2872|consensus
Probab=75.79 E-value=11 Score=33.57 Aligned_cols=45 Identities=11% Similarity=0.076 Sum_probs=33.3
Q ss_pred ChhHHHHHHHHHHhhCCCc-----EEEEEcCCCcCcHHHHHHHHHHcCCCeeee
Q psy2895 122 GSSHFVSCIKHIRKLSTKI-----KIEILIPDFRNQINHVLKIFKQALPDVLNH 170 (293)
Q Consensus 122 ~~~~~~~ll~~i~~~~~~~-----~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~ 170 (293)
...|+.+++++++++.|+. .+-++..|-. -.|++|++.|.|.+.+
T Consensus 229 s~PYl~~I~~~Vk~rl~~~~~~~vPmi~fakG~g----~~Le~l~~tG~DVvgL 278 (359)
T KOG2872|consen 229 SLPYLRQIAEAVKKRLPELGLAPVPMILFAKGSG----GALEELAQTGYDVVGL 278 (359)
T ss_pred hhHHHHHHHHHHHHhhhhhcCCCCceEEEEcCcc----hHHHHHHhcCCcEEee
Confidence 3578999999999987765 4555554322 3689999999998765
No 437
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=75.71 E-value=31 Score=33.62 Aligned_cols=82 Identities=11% Similarity=0.102 Sum_probs=51.6
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEc-CCCcCcHHHHHHHHHHcCCC
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILI-PDFRNQINHVLKIFKQALPD 166 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~-~~~~~~~~e~l~~l~~aG~~ 166 (293)
-+++.+.+.++.+.+.|++.|.|.--.. ...+..+.++++.+++..+...+.+.. +++.--+.-.+..+ ++|++
T Consensus 151 ~~~~~l~~~~~~a~~aGad~i~i~DTvG----~~~P~~v~~li~~l~~~~~~~~i~vH~HND~GlAvANslaAv-~AGA~ 225 (526)
T TIGR00977 151 ANPEYALATLATAQQAGADWLVLCDTNG----GTLPHEISEITTKVKRSLKQPQLGIHAHNDSGTAVANSLLAV-EAGAT 225 (526)
T ss_pred CCHHHHHHHHHHHHhCCCCeEEEecCCC----CcCHHHHHHHHHHHHHhCCCCEEEEEECCCCChHHHHHHHHH-HhCCC
Confidence 4678888888888888888887752111 122467888888888776543355533 33221114456666 47999
Q ss_pred eeeecccc
Q psy2895 167 VLNHNIET 174 (293)
Q Consensus 167 ~i~~~les 174 (293)
++...+.+
T Consensus 226 ~Vd~TinG 233 (526)
T TIGR00977 226 MVQGTING 233 (526)
T ss_pred EEEEeccc
Confidence 88776544
No 438
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=75.38 E-value=23 Score=30.67 Aligned_cols=127 Identities=7% Similarity=0.152 Sum_probs=74.3
Q ss_pred hhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeee
Q psy2895 90 IEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLN 169 (293)
Q Consensus 90 ~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~ 169 (293)
..+..+.++.+.+.|++++++.--+.. .. +...-.++++.|.+.. ..+.+- .|+.+ .+.++.+-++|++++.
T Consensus 29 ~~dP~~~A~~~~~~ga~~lhivDLd~a-~~--g~~~n~~~i~~i~~~~--~~v~vG-GGIrs--~e~~~~~l~~Ga~rvv 100 (241)
T PRK14114 29 EKDPAELVEKLIEEGFTLIHVVDLSKA-IE--NSVENLPVLEKLSEFA--EHIQIG-GGIRS--LDYAEKLRKLGYRRQI 100 (241)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEECCCc-cc--CCcchHHHHHHHHhhc--CcEEEe-cCCCC--HHHHHHHHHCCCCEEE
Confidence 457788888888999999988755421 11 1223456777776642 123331 25555 7788888889999988
Q ss_pred ecccc--chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEE----e--ec-CCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 170 HNIET--VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIM----V--GL-GENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 170 ~~les--s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~i----v--G~-gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
++-.+ ++++++.+. +.-..+.++.++- + |- ..|.-+..+.++.+.++|+..+-+.
T Consensus 101 igT~a~~~p~~l~~~~----------------~~~~~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~t 164 (241)
T PRK14114 101 VSSKVLEDPSFLKFLK----------------EIDVEPVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVHT 164 (241)
T ss_pred ECchhhCCHHHHHHHH----------------HhCCCEEEEEEccCCEEeeCCCeecCCCCHHHHHHHHHhcCCCEEEEE
Confidence 87544 233333321 1100122333321 1 11 2355567778888889998877664
No 439
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=75.32 E-value=32 Score=30.67 Aligned_cols=84 Identities=5% Similarity=-0.019 Sum_probs=50.6
Q ss_pred CCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCC-cEEEEEcCCCcCcHHHHHHHHHHcC
Q psy2895 86 DPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTK-IKIEILIPDFRNQINHVLKIFKQAL 164 (293)
Q Consensus 86 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~-~~i~~~~~~~~~~~~e~l~~l~~aG 164 (293)
..++.+.+.+.++.+.+.|++.+++.|.... ....+.+.-.++++.+.+...+ +.|-+.+.....+..+.++...++|
T Consensus 21 g~iD~~~l~~li~~l~~~Gv~gi~v~GstGE-~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~~t~~ai~~a~~a~~~G 99 (296)
T TIGR03249 21 GSFDEAAYRENIEWLLGYGLEALFAAGGTGE-FFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGGNTSDAIEIARLAEKAG 99 (296)
T ss_pred CCcCHHHHHHHHHHHHhcCCCEEEECCCCcC-cccCCHHHHHHHHHHHHHHhCCCCcEEEecCccHHHHHHHHHHHHHhC
Confidence 5689999999999999999999988655421 1222345666677665554322 2232322211111244555666689
Q ss_pred CCeeee
Q psy2895 165 PDVLNH 170 (293)
Q Consensus 165 ~~~i~~ 170 (293)
+|.+-+
T Consensus 100 adav~~ 105 (296)
T TIGR03249 100 ADGYLL 105 (296)
T ss_pred CCEEEE
Confidence 998754
No 440
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=75.22 E-value=19 Score=31.92 Aligned_cols=67 Identities=9% Similarity=0.151 Sum_probs=43.0
Q ss_pred HHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeeecc
Q psy2895 96 IAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNHNI 172 (293)
Q Consensus 96 ~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~l 172 (293)
++.++.+.|+.-|.|-. + +.+.+.+.++.+++.+.+-++.+..+|=++ .+.+..+.+.|+|.+..+-
T Consensus 194 ea~~a~~agaDiI~LDn-----~---~~e~l~~~v~~l~~~~~~~~~~leaSGGI~--~~ni~~yA~tGvD~Is~ga 260 (278)
T PRK08385 194 DALKAAKAGADIIMLDN-----M---TPEEIREVIEALKREGLRERVKIEVSGGIT--PENIEEYAKLDVDVISLGA 260 (278)
T ss_pred HHHHHHHcCcCEEEECC-----C---CHHHHHHHHHHHHhcCcCCCEEEEEECCCC--HHHHHHHHHcCCCEEEeCh
Confidence 34445567888666532 2 256788888888775411134443333244 7788999999999998763
No 441
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=75.11 E-value=34 Score=33.15 Aligned_cols=132 Identities=16% Similarity=0.082 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeee
Q psy2895 91 EEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNH 170 (293)
Q Consensus 91 eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~ 170 (293)
++-.+.++.+.+.|+.-|.+-..+. ......+++++|++.+|+..|-. .+..+ .+....+.++|+|.+.+
T Consensus 247 ~~~~~r~~~l~~ag~d~i~iD~~~g------~~~~~~~~i~~ik~~~p~~~vi~--g~v~t--~e~a~~a~~aGaD~i~v 316 (505)
T PLN02274 247 ESDKERLEHLVKAGVDVVVLDSSQG------DSIYQLEMIKYIKKTYPELDVIG--GNVVT--MYQAQNLIQAGVDGLRV 316 (505)
T ss_pred ccHHHHHHHHHHcCCCEEEEeCCCC------CcHHHHHHHHHHHHhCCCCcEEE--ecCCC--HHHHHHHHHcCcCEEEE
Confidence 4557888999999999888765432 23467789999999887644322 22333 66777888899999976
Q ss_pred cc-ccchHHHhhcC-CCC-CHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEeec
Q psy2895 171 NI-ETVPRLYKKVR-PGS-DYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIGQ 241 (293)
Q Consensus 171 ~l-ess~~~~~~i~-~~~-~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~ 241 (293)
++ .++--.-+... .+. ....+...-+.+++. ++++-++ |=-.+..|+...+ .+|.+.+.+..
T Consensus 317 g~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~--~vpVIad---GGI~~~~di~kAl----a~GA~~V~vGs 381 (505)
T PLN02274 317 GMGSGSICTTQEVCAVGRGQATAVYKVASIAAQH--GVPVIAD---GGISNSGHIVKAL----TLGASTVMMGS 381 (505)
T ss_pred CCCCCccccCccccccCCCcccHHHHHHHHHHhc--CCeEEEe---CCCCCHHHHHHHH----HcCCCEEEEch
Confidence 54 22211111111 011 112233333333333 5543221 2235666665554 47988877753
No 442
>PRK02227 hypothetical protein; Provisional
Probab=74.82 E-value=56 Score=28.30 Aligned_cols=135 Identities=13% Similarity=0.114 Sum_probs=0.0
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEc-CCCc-----CcHHHHHHHHH
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILI-PDFR-----NQINHVLKIFK 161 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~-~~~~-----~~~~e~l~~l~ 161 (293)
..+..+...+..+...|+.+|-+.=...... ..-.+.+..+++.++...++..+-... .+.. .. .+.++..+
T Consensus 64 ~~p~~~~~aa~~~a~~GvDyVKvGl~~~~~~-~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~-~~l~~~a~ 141 (238)
T PRK02227 64 YKPGTISLAALGAAATGADYVKVGLYGGKTA-EEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSP-LSLPAIAA 141 (238)
T ss_pred CCchHHHHHHHHHHhhCCCEEEEcCCCCCcH-HHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCCh-HHHHHHHH
Q ss_pred HcCCCeeeecccc-c-hHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHHHHHhCCCCEEE
Q psy2895 162 QALPDVLNHNIET-V-PRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHDMRNHNIDILT 238 (293)
Q Consensus 162 ~aG~~~i~~~les-s-~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~~l~~l~~~~i~ 238 (293)
++|++.+-+.--. . ..+++.| +.++.-+.++.+|++ +++.|+ |.= -.+++..|+.+++|++.
T Consensus 142 ~aGf~g~MlDTa~Kdg~~Lfd~l----~~~~L~~Fv~~ar~~--------Gl~~gLAGSL---~~~dip~L~~l~pD~lG 206 (238)
T PRK02227 142 DAGFDGAMLDTAIKDGKSLFDHM----DEEELAEFVAEARSH--------GLMSALAGSL---KFEDIPALKRLGPDILG 206 (238)
T ss_pred HcCCCEEEEecccCCCcchHhhC----CHHHHHHHHHHHHHc--------ccHhHhcccC---chhhHHHHHhcCCCEEE
Q ss_pred e
Q psy2895 239 I 239 (293)
Q Consensus 239 i 239 (293)
+
T Consensus 207 f 207 (238)
T PRK02227 207 V 207 (238)
T ss_pred e
No 443
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=74.71 E-value=86 Score=30.42 Aligned_cols=21 Identities=29% Similarity=-0.105 Sum_probs=10.1
Q ss_pred hhHHHHHHHHHHHCCCcEEEE
Q psy2895 90 IEEPKKIAYTINKLKLNYVVI 110 (293)
Q Consensus 90 ~eei~~~~~~~~~~G~~~i~l 110 (293)
++-+.+.++.+.+.|+..|.|
T Consensus 238 ~efl~~~~~~a~~~Gad~I~l 258 (503)
T PLN03228 238 KEFLCKILGEAIKAGATSVGI 258 (503)
T ss_pred HHHHHHHHHHHHhcCCCEEEE
Confidence 344444455555555554444
No 444
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=74.55 E-value=38 Score=31.34 Aligned_cols=69 Identities=10% Similarity=0.036 Sum_probs=44.6
Q ss_pred HHHHHHHHcCCCeeee-ccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCC
Q psy2895 155 HVLKIFKQALPDVLNH-NIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHN 233 (293)
Q Consensus 155 e~l~~l~~aG~~~i~~-~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~ 233 (293)
+.++.+++.|++++.+ +-++ + ...+++.+.+.++.+++.+|++.++++ .-|.++ ++.+++.|
T Consensus 111 ~~a~~~~~~Gv~~i~lvgGe~-p-------~~~~~e~l~~~i~~Ik~~~p~i~i~~g-----~lt~e~----l~~Lk~aG 173 (371)
T PRK09240 111 REMAAIKKLGFEHILLLTGEH-E-------AKVGVDYIRRALPIAREYFSSVSIEVQ-----PLSEEE----YAELVELG 173 (371)
T ss_pred HHHHHHHhCCCCEEEEeeCCC-C-------CCCCHHHHHHHHHHHHHhCCCceeccC-----CCCHHH----HHHHHHcC
Confidence 3445566678888765 2111 1 023688888999999888776655442 235444 37778899
Q ss_pred CCEEEee
Q psy2895 234 IDILTIG 240 (293)
Q Consensus 234 ~~~i~i~ 240 (293)
++.++++
T Consensus 174 v~r~~i~ 180 (371)
T PRK09240 174 LDGVTVY 180 (371)
T ss_pred CCEEEEE
Confidence 9988875
No 445
>PRK12928 lipoyl synthase; Provisional
Probab=74.39 E-value=21 Score=31.87 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=12.6
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 217 ENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 217 Et~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
-++++|.+.-+...++|+.++.-.
T Consensus 255 ~~~~~f~~~~~~~~~~g~~~~~~~ 278 (290)
T PRK12928 255 WTPEEFEALGQIARELGFSHVRSG 278 (290)
T ss_pred cCHHHHHHHHHHHHHcCCceeEec
Confidence 355555555555555555554433
No 446
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=74.05 E-value=65 Score=28.72 Aligned_cols=134 Identities=7% Similarity=0.046 Sum_probs=71.8
Q ss_pred CCcEEEEeeec------CCCCCCCChhHHHHHHHHHHhhCCCcEEEEEc-CCCcC--cHHHHHHHHHHcCCCeeeecccc
Q psy2895 104 KLNYVVITSVN------RDDLHDGGSSHFVSCIKHIRKLSTKIKIEILI-PDFRN--QINHVLKIFKQALPDVLNHNIET 174 (293)
Q Consensus 104 G~~~i~l~gg~------~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~-~~~~~--~~~e~l~~l~~aG~~~i~~~les 174 (293)
|++-+.++|.. .||....+++.+.+.++.|.... .+.+.+=. .+ .+ ++...++++.++|+..+++-=++
T Consensus 38 Gf~ai~~ss~~~a~s~G~pD~~~~~~~e~~~~~~~I~~a~-~~Pv~~D~d~G-g~~~~v~r~V~~l~~aGvaGi~iEDq~ 115 (285)
T TIGR02320 38 GFDGIWSSSLTDSTSRGVPDIEEASWTQRLDVVEFMFDVT-TKPIILDGDTG-GNFEHFRRLVRKLERRGVSAVCIEDKL 115 (285)
T ss_pred CcCEEEechHHHHHHCCCCCcCcCCHHHHHHHHHHHHhhc-CCCEEEecCCC-CCHHHHHHHHHHHHHcCCeEEEEeccC
Confidence 88888776643 13322223455555555555432 22333311 13 21 23566888888998887763111
Q ss_pred chHHHhhcCC-----CCCHHHHHHHHHHHHHhC--CCceee--EeEEeecCCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 175 VPRLYKKVRP-----GSDYKHSLNLLKNFKKLY--PNILTK--SGIMVGLGENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 175 s~~~~~~i~~-----~~~~e~~l~~i~~~~~~~--pgi~~~--~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
.++..-.+.. -.+.++..+.|+.++++. +++.+. |+-.++ +...++..+-.+...+.|.|.+.+.
T Consensus 116 ~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~-~~~~~eAi~Ra~ay~eAGAD~ifv~ 189 (285)
T TIGR02320 116 GLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLIL-GKGMEDALKRAEAYAEAGADGIMIH 189 (285)
T ss_pred CCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccc-cCCHHHHHHHHHHHHHcCCCEEEec
Confidence 1211111111 136788888888888763 223222 222211 3456777777788888999988773
No 447
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=74.04 E-value=39 Score=29.90 Aligned_cols=83 Identities=10% Similarity=0.030 Sum_probs=51.2
Q ss_pred CCCCChhHHHHHHHHHHHCCCcEEEEee--ecCCCCCCCChhHHHHHHHHHHhhCCC-cEEEEEcCCC-cCcHHHHHHHH
Q psy2895 85 PDPLDIEEPKKIAYTINKLKLNYVVITS--VNRDDLHDGGSSHFVSCIKHIRKLSTK-IKIEILIPDF-RNQINHVLKIF 160 (293)
Q Consensus 85 ~~~~~~eei~~~~~~~~~~G~~~i~l~g--g~~~~l~~~~~~~~~~ll~~i~~~~~~-~~i~~~~~~~-~~~~~e~l~~l 160 (293)
...++.+.+.+.++.+.+.|++.+++.| |+...+ +.+.-.++++.+.+...+ +.+-+.+... ..+..+..+..
T Consensus 13 ~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~L---s~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a 89 (285)
T TIGR00674 13 DGSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTL---SHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFA 89 (285)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccC---CHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHH
Confidence 3568999999999999999999988754 444333 345666667666554322 3333333211 11124456666
Q ss_pred HHcCCCeeee
Q psy2895 161 KQALPDVLNH 170 (293)
Q Consensus 161 ~~aG~~~i~~ 170 (293)
+++|+|.+.+
T Consensus 90 ~~~Gad~v~v 99 (285)
T TIGR00674 90 EDVGADGFLV 99 (285)
T ss_pred HHcCCCEEEE
Confidence 7789998765
No 448
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=73.97 E-value=64 Score=30.31 Aligned_cols=111 Identities=10% Similarity=0.057 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEcCCC--cCcHHHHHHHHHHcCCCeeeeccccchHH-HhhcCC--CCCHHHHHHHHHHH
Q psy2895 124 SHFVSCIKHIRKLSTKIKIEILIPDF--RNQINHVLKIFKQALPDVLNHNIETVPRL-YKKVRP--GSDYKHSLNLLKNF 198 (293)
Q Consensus 124 ~~~~~ll~~i~~~~~~~~i~~~~~~~--~~~~~e~l~~l~~aG~~~i~~~less~~~-~~~i~~--~~~~e~~l~~i~~~ 198 (293)
+++.+.++.+++..++..+-+...+. .+...+.++.+.++|+|.+.+++-....+ .+.... ..+.+...+.++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v 163 (420)
T PRK08318 84 EVNLREIRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWV 163 (420)
T ss_pred HHHHHHHHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHH
Confidence 44455555554433332222222222 12124566667778888888876442111 111111 24678888888888
Q ss_pred HHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEe
Q psy2895 199 KKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTI 239 (293)
Q Consensus 199 ~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i 239 (293)
++.. ..-+++-+.-+..++.+.++.+.+.|++-+.+
T Consensus 164 ~~~~-----~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~ 199 (420)
T PRK08318 164 KRGS-----RLPVIVKLTPNITDIREPARAAKRGGADAVSL 199 (420)
T ss_pred Hhcc-----CCcEEEEcCCCcccHHHHHHHHHHCCCCEEEE
Confidence 8751 23455556444456888888889999998775
No 449
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=73.91 E-value=28 Score=25.25 Aligned_cols=78 Identities=8% Similarity=0.023 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEc-CCCcCcHHHHHHHHHHcCCCeeee-ccccchHHHhhcCC-CCCHHHHHHHHHHHHH
Q psy2895 124 SHFVSCIKHIRKLSTKIKIEILI-PDFRNQINHVLKIFKQALPDVLNH-NIETVPRLYKKVRP-GSDYKHSLNLLKNFKK 200 (293)
Q Consensus 124 ~~~~~ll~~i~~~~~~~~i~~~~-~~~~~~~~e~l~~l~~aG~~~i~~-~less~~~~~~i~~-~~~~e~~l~~i~~~~~ 200 (293)
..+..+.+.+++..|...+.... ......+.+.++.+.+.|.+++.+ ++= +-+ .|..+++-+.++.+++
T Consensus 16 ~~~~~l~~~l~~~~~~~~v~~afle~~~p~~~~~l~~l~~~g~~~v~vvPlf--------l~~G~h~~~dip~~~~~~~~ 87 (101)
T cd03416 16 EALEALAERLRERLPGDEVELAFLELAEPSLAEALDELAAQGATRIVVVPLF--------LLAGGHVKEDIPAALAAARA 87 (101)
T ss_pred HHHHHHHHHHHhhCCCCcEEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEeeE--------eCCCccccccHHHHHHHHHH
Confidence 56778888888876544555432 111223478899999999988765 321 222 3455678888888887
Q ss_pred hCCCceeeE
Q psy2895 201 LYPNILTKS 209 (293)
Q Consensus 201 ~~pgi~~~~ 209 (293)
.+|++.+..
T Consensus 88 ~~~~~~i~~ 96 (101)
T cd03416 88 RHPGVRIRY 96 (101)
T ss_pred HCCCeEEEe
Confidence 777876543
No 450
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=73.90 E-value=37 Score=30.37 Aligned_cols=84 Identities=5% Similarity=-0.057 Sum_probs=50.7
Q ss_pred CCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCC-cEEEEEcCCCcCcHHHHHHHHHHcC
Q psy2895 86 DPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTK-IKIEILIPDFRNQINHVLKIFKQAL 164 (293)
Q Consensus 86 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~-~~i~~~~~~~~~~~~e~l~~l~~aG 164 (293)
..++.+.+.+.++.+.+.|++.+++.|.... ....+.+.-.++++.+.+...+ +.+-+.+.....+..+.++...++|
T Consensus 23 g~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE-~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~t~~~i~~~~~a~~~G 101 (303)
T PRK03620 23 GSFDEAAYREHLEWLAPYGAAALFAAGGTGE-FFSLTPDEYSQVVRAAVETTAGRVPVIAGAGGGTAQAIEYAQAAERAG 101 (303)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcCCcC-cccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHHHHHhC
Confidence 4689999999999999999999887664421 2222345666777766554322 2222222211111244556666789
Q ss_pred CCeeee
Q psy2895 165 PDVLNH 170 (293)
Q Consensus 165 ~~~i~~ 170 (293)
++.+-+
T Consensus 102 adav~~ 107 (303)
T PRK03620 102 ADGILL 107 (303)
T ss_pred CCEEEE
Confidence 998754
No 451
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=73.86 E-value=22 Score=32.70 Aligned_cols=46 Identities=13% Similarity=0.047 Sum_probs=31.7
Q ss_pred HHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeeeccccc
Q psy2895 129 CIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNHNIETV 175 (293)
Q Consensus 129 ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~less 175 (293)
++..+++.+|++.+++.+-....+ .+.++.+++.|+.++-++-|-+
T Consensus 103 ~i~l~~e~~p~l~ih~S~q~~v~N-~~~~~f~~~~G~~rvVl~rEls 148 (347)
T COG0826 103 LIMLARERGPDLPIHVSTQANVTN-AETAKFWKELGAKRVVLPRELS 148 (347)
T ss_pred HHHHHHHhCCCCcEEEeeeEecCC-HHHHHHHHHcCCEEEEeCccCC
Confidence 445666777888888865322223 7788888888988887766653
No 452
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=73.79 E-value=65 Score=28.65 Aligned_cols=141 Identities=14% Similarity=0.209 Sum_probs=80.3
Q ss_pred CChhHHHHHHHHHHHCC-CcEEEEeeecCC-----CCCCCChhHHHHHHHHHHhhCCCcEEEE-EcCCCcCcHHHHHHHH
Q psy2895 88 LDIEEPKKIAYTINKLK-LNYVVITSVNRD-----DLHDGGSSHFVSCIKHIRKLSTKIKIEI-LIPDFRNQINHVLKIF 160 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G-~~~i~l~gg~~~-----~l~~~~~~~~~~ll~~i~~~~~~~~i~~-~~~~~~~~~~e~l~~l 160 (293)
-++++..+.++.+.+.| +..|-|.-+-|. .....+.+.+.++++.+++.. ++.|.+ .+++. ++..+.++.+
T Consensus 101 ~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~-~~~~~~a~~l 178 (301)
T PRK07259 101 STEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV-KVPVIVKLTPNV-TDIVEIAKAA 178 (301)
T ss_pred CCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEEcCCCc-hhHHHHHHHH
Confidence 36899999999998888 888866432210 011223577889999998864 233333 12322 2335678888
Q ss_pred HHcCCCeeee-c-ccc-c------hHHHh----hcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec--CCCHHHHHHH
Q psy2895 161 KQALPDVLNH-N-IET-V------PRLYK----KVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL--GENDEEILTV 225 (293)
Q Consensus 161 ~~aG~~~i~~-~-les-s------~~~~~----~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~--gEt~ed~~~~ 225 (293)
.++|+|.+.+ + .-. . ...+. .+.+.....-.++.++.+++.. +++ ++|. -.|.+|..+.
T Consensus 179 ~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~-~ip-----vi~~GGI~~~~da~~~ 252 (301)
T PRK07259 179 EEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAV-DIP-----IIGMGGISSAEDAIEF 252 (301)
T ss_pred HHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhC-CCC-----EEEECCCCCHHHHHHH
Confidence 8999998864 1 111 0 00000 0111111122466667776652 333 2334 4688888777
Q ss_pred HHHHHhCCCCEEEee
Q psy2895 226 IHDMRNHNIDILTIG 240 (293)
Q Consensus 226 l~~l~~l~~~~i~i~ 240 (293)
+. .|.+.+.+.
T Consensus 253 l~----aGAd~V~ig 263 (301)
T PRK07259 253 IM----AGASAVQVG 263 (301)
T ss_pred HH----cCCCceeEc
Confidence 63 588888775
No 453
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=73.68 E-value=34 Score=30.50 Aligned_cols=66 Identities=9% Similarity=0.085 Sum_probs=43.8
Q ss_pred HHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeeec
Q psy2895 94 KKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNHN 171 (293)
Q Consensus 94 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~ 171 (293)
+++++++.+.|+.-|.+ +. + +.+.+.+.++.+++..++..+.+ +|=++ .+.+..+.+.|+|.+..+
T Consensus 199 leqa~ea~~agaDiI~L---Dn--~---~~e~l~~av~~~~~~~~~~~lea--SGGI~--~~ni~~yA~tGvD~Is~g 264 (284)
T PRK06096 199 PKEAIAALRAQPDVLQL---DK--F---SPQQATEIAQIAPSLAPHCTLSL--AGGIN--LNTLKNYADCGIRLFITS 264 (284)
T ss_pred HHHHHHHHHcCCCEEEE---CC--C---CHHHHHHHHHHhhccCCCeEEEE--ECCCC--HHHHHHHHhcCCCEEEEC
Confidence 34455556778887776 21 2 25778888887765555443433 33344 788999999999999875
No 454
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=73.35 E-value=78 Score=29.31 Aligned_cols=136 Identities=13% Similarity=0.115 Sum_probs=0.0
Q ss_pred CCCCChhHHHHHHHHH-------HHCCCcEEEEeeecC--------CCCCCCChhH----------HHHHHHHHHhhCCC
Q psy2895 85 PDPLDIEEPKKIAYTI-------NKLKLNYVVITSVNR--------DDLHDGGSSH----------FVSCIKHIRKLSTK 139 (293)
Q Consensus 85 ~~~~~~eei~~~~~~~-------~~~G~~~i~l~gg~~--------~~l~~~~~~~----------~~~ll~~i~~~~~~ 139 (293)
++.++.+||.+++++. .+.|+.-|-|.|.+. |....++-+| ..++++.+++..+.
T Consensus 136 pr~mt~~eI~~ii~~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~ 215 (363)
T COG1902 136 PRELTEEEIEEVIEDFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGA 215 (363)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCC
Q ss_pred ---cEEEEEcCCC-cC------cHHHHHHHHHHcC-CCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCcee
Q psy2895 140 ---IKIEILIPDF-RN------QINHVLKIFKQAL-PDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILT 207 (293)
Q Consensus 140 ---~~i~~~~~~~-~~------~~~e~l~~l~~aG-~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~ 207 (293)
+.++++..++ .. +..+.++.|.+.| ++.++++ + .......+.... ..-.+...+.++.. ..
T Consensus 216 ~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs--~~~~~~~~~~~~~~-~~~~~~~a~~i~~~--~~-- 288 (363)
T COG1902 216 DFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVS--EGGYERGGTITVSG-PGYQVEFAARIKKA--VR-- 288 (363)
T ss_pred CceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEee--cccccCCCCccccc-cchhHHHHHHHHHh--cC--
Q ss_pred eEeEEeecCCCHHHHHHHHH
Q psy2895 208 KSGIMVGLGENDEEILTVIH 227 (293)
Q Consensus 208 ~~~~ivG~gEt~ed~~~~l~ 227 (293)
...+.+|..-+.+..++.++
T Consensus 289 ~pvi~~G~i~~~~~Ae~~l~ 308 (363)
T COG1902 289 IPVIAVGGINDPEQAEEILA 308 (363)
T ss_pred CCEEEeCCCCCHHHHHHHHH
No 455
>PLN02417 dihydrodipicolinate synthase
Probab=73.24 E-value=40 Score=29.78 Aligned_cols=83 Identities=10% Similarity=-0.044 Sum_probs=51.2
Q ss_pred CCCCChhHHHHHHHHHHHCCCcEEEEeee--cCCCCCCCChhHHHHHHHHHHhhCCC-cEEEEEcCCCcC-cHHHHHHHH
Q psy2895 85 PDPLDIEEPKKIAYTINKLKLNYVVITSV--NRDDLHDGGSSHFVSCIKHIRKLSTK-IKIEILIPDFRN-QINHVLKIF 160 (293)
Q Consensus 85 ~~~~~~eei~~~~~~~~~~G~~~i~l~gg--~~~~l~~~~~~~~~~ll~~i~~~~~~-~~i~~~~~~~~~-~~~e~l~~l 160 (293)
...++.+.+.+.++.+.+.|++.|++.|. +...+ +.+.-.++++.+.+...+ +.+-+.+..... +..+.++..
T Consensus 16 ~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~l---s~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a 92 (280)
T PLN02417 16 DGRFDLEAYDSLVNMQIENGAEGLIVGGTTGEGQLM---SWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQG 92 (280)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccCcchhhC---CHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHH
Confidence 35689999999999999999999887654 33333 345666677766554322 233332221111 123455556
Q ss_pred HHcCCCeeee
Q psy2895 161 KQALPDVLNH 170 (293)
Q Consensus 161 ~~aG~~~i~~ 170 (293)
+++|+|.+.+
T Consensus 93 ~~~Gadav~~ 102 (280)
T PLN02417 93 FAVGMHAALH 102 (280)
T ss_pred HHcCCCEEEE
Confidence 6789998765
No 456
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=72.76 E-value=14 Score=31.56 Aligned_cols=74 Identities=16% Similarity=0.130 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcC-CCcCcHHHHHHH-HHHcCCCe
Q psy2895 90 IEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIP-DFRNQINHVLKI-FKQALPDV 167 (293)
Q Consensus 90 ~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~-~~~~~~~e~l~~-l~~aG~~~ 167 (293)
..+..+.++.+.+.|+..+.+++-+.... ..+ .-.++++++++.. .+.+... +..+ .+.++. +++.|++.
T Consensus 152 ~~~~~~~~~~~~~~G~d~i~i~~i~~~g~-~~g--~~~~~~~~i~~~~---~ipvia~GGi~s--~~di~~~l~~~gadg 223 (232)
T TIGR03572 152 GRDPVEWAREAEQLGAGEILLNSIDRDGT-MKG--YDLELIKTVSDAV---SIPVIALGGAGS--LDDLVEVALEAGASA 223 (232)
T ss_pred CCCHHHHHHHHHHcCCCEEEEeCCCccCC-cCC--CCHHHHHHHHhhC---CCCEEEECCCCC--HHHHHHHHHHcCCCE
Confidence 44467788888899999999987543111 111 2346677777643 3444443 5444 555555 88899999
Q ss_pred eeec
Q psy2895 168 LNHN 171 (293)
Q Consensus 168 i~~~ 171 (293)
+.++
T Consensus 224 V~vg 227 (232)
T TIGR03572 224 VAAA 227 (232)
T ss_pred EEEe
Confidence 8775
No 457
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=72.63 E-value=72 Score=28.59 Aligned_cols=84 Identities=6% Similarity=-0.024 Sum_probs=52.7
Q ss_pred CCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCC-cEEEEEcCCCcC-cHHHHHHHHHHc
Q psy2895 86 DPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTK-IKIEILIPDFRN-QINHVLKIFKQA 163 (293)
Q Consensus 86 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~-~~i~~~~~~~~~-~~~e~l~~l~~a 163 (293)
..++.+...+.++.+.+.|+..|++.|.... .+..+.+.-.++++.+.+...+ +.+-+.+.+... +..+..+..++.
T Consensus 20 g~vD~~a~~~lv~~li~~Gv~gi~~~GttGE-~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~ 98 (299)
T COG0329 20 GSVDEEALRRLVEFLIAAGVDGLVVLGTTGE-SPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKL 98 (299)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCCCcc-chhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhc
Confidence 4589999999999999999999988665432 1222356666777777665322 223232221111 124566667778
Q ss_pred CCCeeee
Q psy2895 164 LPDVLNH 170 (293)
Q Consensus 164 G~~~i~~ 170 (293)
|+|.+.+
T Consensus 99 Gad~il~ 105 (299)
T COG0329 99 GADGILV 105 (299)
T ss_pred CCCEEEE
Confidence 9998754
No 458
>PRK00915 2-isopropylmalate synthase; Validated
Probab=72.54 E-value=37 Score=32.94 Aligned_cols=82 Identities=13% Similarity=0.094 Sum_probs=45.2
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCC---cEEEEEc-CCCcCcHHHHHHHHHHc
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTK---IKIEILI-PDFRNQINHVLKIFKQA 163 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~---~~i~~~~-~~~~~~~~e~l~~l~~a 163 (293)
-+++.+.+.++.+.+.|+..|.|.--.. ...+..+.++++.+++..++ +.+.+.. +++.--+.-.+..+ ++
T Consensus 146 ~d~~~l~~~~~~~~~~Ga~~i~l~DTvG----~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANslaAv-~a 220 (513)
T PRK00915 146 TDLDFLCRVVEAAIDAGATTINIPDTVG----YTTPEEFGELIKTLRERVPNIDKAIISVHCHNDLGLAVANSLAAV-EA 220 (513)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEccCCC----CCCHHHHHHHHHHHHHhCCCcccceEEEEecCCCCHHHHHHHHHH-Hh
Confidence 3566677777777777777766632111 11245677777777766543 4444433 22211113455555 47
Q ss_pred CCCeeeecccc
Q psy2895 164 LPDVLNHNIET 174 (293)
Q Consensus 164 G~~~i~~~les 174 (293)
|++.+...+.+
T Consensus 221 Ga~~Vd~Tv~G 231 (513)
T PRK00915 221 GARQVECTING 231 (513)
T ss_pred CCCEEEEEeec
Confidence 88877665443
No 459
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=72.46 E-value=56 Score=29.63 Aligned_cols=81 Identities=19% Similarity=0.239 Sum_probs=45.5
Q ss_pred HHHHHHHHHcCCCeeeeccccchHHHhhcCCCCCH-HHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhC
Q psy2895 154 NHVLKIFKQALPDVLNHNIETVPRLYKKVRPGSDY-KHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNH 232 (293)
Q Consensus 154 ~e~l~~l~~aG~~~i~~~less~~~~~~i~~~~~~-e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l 232 (293)
.+.++.+.++|+|.+.+++-..+.- .... +... +.+.+.++.+++.. .+ -+++-+.-+..++.+.++.+.+.
T Consensus 115 ~~~a~~~~~~gad~iElN~s~~~~~-~~~~-g~~~~~~~~eiv~~v~~~~-~i----Pv~vKl~p~~~~~~~~a~~l~~~ 187 (325)
T cd04739 115 VDYARQIEEAGADALELNIYALPTD-PDIS-GAEVEQRYLDILRAVKSAV-TI----PVAVKLSPFFSALAHMAKQLDAA 187 (325)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCC-CCcc-cchHHHHHHHHHHHHHhcc-CC----CEEEEcCCCccCHHHHHHHHHHc
Confidence 3566666677888887776431100 0111 2222 44556777776652 22 34444422334677888888888
Q ss_pred CCCEEEeec
Q psy2895 233 NIDILTIGQ 241 (293)
Q Consensus 233 ~~~~i~i~~ 241 (293)
|++.+.+.+
T Consensus 188 Gadgi~~~n 196 (325)
T cd04739 188 GADGLVLFN 196 (325)
T ss_pred CCCeEEEEc
Confidence 888776653
No 460
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=72.45 E-value=60 Score=27.63 Aligned_cols=124 Identities=15% Similarity=0.055 Sum_probs=78.3
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEE--cCCCcCcHHHHHHHHHHcC
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEIL--IPDFRNQINHVLKIFKQAL 164 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~--~~~~~~~~~e~l~~l~~aG 164 (293)
.++.++.++.++++.+. + .++--|.+ +- ..+=.+.++.+++.+|+--|-.= |-|... =..+...++|
T Consensus 12 ~~~l~~Ai~~a~~v~~~-~--diiEvGTp--Li---k~eG~~aV~~lr~~~pd~~IvAD~Kt~D~G~---~e~~ma~~aG 80 (217)
T COG0269 12 LLDLEEAIEIAEEVADY-V--DIIEVGTP--LI---KAEGMRAVRALRELFPDKIIVADLKTADAGA---IEARMAFEAG 80 (217)
T ss_pred ccCHHHHHHHHHHhhhc-c--eEEEeCcH--HH---HHhhHHHHHHHHHHCCCCeEEeeeeecchhH---HHHHHHHHcC
Confidence 46788888888877665 3 34455553 31 12223778889999987544331 113222 2355666899
Q ss_pred CCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 165 PDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 165 ~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
.|.+.+.-= -+.+-+..+++.+++. |..+-.++|- .. ++..-.+.++++|++.+-++
T Consensus 81 Ad~~tV~g~------------A~~~TI~~~i~~A~~~--~~~v~iDl~~--~~---~~~~~~~~l~~~gvd~~~~H 137 (217)
T COG0269 81 ADWVTVLGA------------ADDATIKKAIKVAKEY--GKEVQIDLIG--VW---DPEQRAKWLKELGVDQVILH 137 (217)
T ss_pred CCEEEEEec------------CCHHHHHHHHHHHHHc--CCeEEEEeec--CC---CHHHHHHHHHHhCCCEEEEE
Confidence 999987421 1445567788889998 8887777652 23 34455566677999988776
No 461
>PRK05927 hypothetical protein; Provisional
Probab=72.26 E-value=15 Score=33.69 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=12.6
Q ss_pred CCHHHHHHHHHHHHHhCCCc
Q psy2895 186 SDYKHSLNLLKNFKKLYPNI 205 (293)
Q Consensus 186 ~~~e~~l~~i~~~~~~~pgi 205 (293)
.+++.+.+.++.+++.+|++
T Consensus 106 ~~~e~~~~~i~~ik~~~p~l 125 (350)
T PRK05927 106 LGIDYLEELVRITVKEFPSL 125 (350)
T ss_pred CCHHHHHHHHHHHHHHCCCC
Confidence 35666666666666665555
No 462
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=72.21 E-value=59 Score=28.86 Aligned_cols=90 Identities=20% Similarity=0.205 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCC
Q psy2895 125 HFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPN 204 (293)
Q Consensus 125 ~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pg 204 (293)
.+.+.++.+++..|+..|.+-. .+ .+.+.+..++|+|.+.+. +.++++..+.++.+++..|+
T Consensus 174 ~i~~av~~~r~~~~~~kIeVEv---~t--leea~ea~~~GaDiI~lD-------------n~~~e~l~~~v~~l~~~~~~ 235 (277)
T TIGR01334 174 DWGGAIGRLKQTAPERKITVEA---DT--IEQALTVLQASPDILQLD-------------KFTPQQLHHLHERLKFFDHI 235 (277)
T ss_pred cHHHHHHHHHHhCCCCCEEEEC---CC--HHHHHHHHHcCcCEEEEC-------------CCCHHHHHHHHHHHhccCCC
Confidence 4677788888776654455532 22 455566667899987653 45788888888888765444
Q ss_pred ceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 205 ILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 205 i~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
+.+. .-| |=|.+.+. ...+.|+|.+.++
T Consensus 236 ~~le---asG-GI~~~ni~----~ya~~GvD~is~g 263 (277)
T TIGR01334 236 PTLA---AAG-GINPENIA----DYIEAGIDLFITS 263 (277)
T ss_pred EEEE---EEC-CCCHHHHH----HHHhcCCCEEEeC
Confidence 4322 122 66666554 4467899998886
No 463
>PLN02321 2-isopropylmalate synthase
Probab=72.00 E-value=37 Score=33.90 Aligned_cols=82 Identities=17% Similarity=0.021 Sum_probs=54.2
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCC---cEEEEEc-CCCcCcHHHHHHHHHHc
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTK---IKIEILI-PDFRNQINHVLKIFKQA 163 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~---~~i~~~~-~~~~~~~~e~l~~l~~a 163 (293)
-+++.+.+.++.+.+.|+..|.|.--.. ...+..+.++++.+++..|+ +.+.+.. +++.--+.-.+..+ ++
T Consensus 237 td~d~l~~~~~~a~~aGa~~I~L~DTvG----~~~P~~v~~li~~l~~~~~~~~~v~i~vH~HND~GlAvANslaAv-~A 311 (632)
T PLN02321 237 SDPEFLYRILGEVIKAGATTLNIPDTVG----YTLPSEFGQLIADIKANTPGIENVIISTHCQNDLGLSTANTLAGA-HA 311 (632)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccccc----CCCHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHH-Hh
Confidence 5688999999999999999887742221 12246888999999887653 3355533 33221114456666 58
Q ss_pred CCCeeeecccc
Q psy2895 164 LPDVLNHNIET 174 (293)
Q Consensus 164 G~~~i~~~les 174 (293)
|++.+...+.+
T Consensus 312 GA~~Vd~TinG 322 (632)
T PLN02321 312 GARQVEVTING 322 (632)
T ss_pred CCCEEEEeccc
Confidence 99998876654
No 464
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=71.99 E-value=63 Score=27.67 Aligned_cols=123 Identities=11% Similarity=0.219 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcC-CCcCcHHHHHHHHHHcCCCeeee
Q psy2895 92 EPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIP-DFRNQINHVLKIFKQALPDVLNH 170 (293)
Q Consensus 92 ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~-~~~~~~~e~l~~l~~aG~~~i~~ 170 (293)
+..+.++.+.+. ++++++..-+. .+.. ...-.++++.+.+.. .+.+... |..+ .+.++.+.++|++.+-+
T Consensus 31 dp~~~a~~~~~~-~~~l~ivDldg-a~~g--~~~n~~~i~~i~~~~---~~pv~~gGGIrs--~edv~~l~~~G~~~viv 101 (228)
T PRK04128 31 DPVEIALRFSEY-VDKIHVVDLDG-AFEG--KPKNLDVVKNIIRET---GLKVQVGGGLRT--YESIKDAYEIGVENVII 101 (228)
T ss_pred CHHHHHHHHHHh-CCEEEEEECcc-hhcC--CcchHHHHHHHHhhC---CCCEEEcCCCCC--HHHHHHHHHCCCCEEEE
Confidence 456666767676 88888744332 1111 112245667776542 2334333 5555 77888888899999887
Q ss_pred ccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEee------c-CCCHHHHHHHHHHHHhCCCCEEEe
Q psy2895 171 NIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVG------L-GENDEEILTVIHDMRNHNIDILTI 239 (293)
Q Consensus 171 ~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG------~-gEt~ed~~~~l~~l~~l~~~~i~i 239 (293)
+-.+. + .+.++.+.+.++.+.++.+.-=| . ..+.-+..+.++.+++. +..+-+
T Consensus 102 Gtaa~-----------~----~~~l~~~~~~~g~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~-~~~ii~ 161 (228)
T PRK04128 102 GTKAF-----------D----LEFLEKVTSEFEGITVSLDVKGGRIAVKGWLEESSIKVEDAYEMLKNY-VNRFIY 161 (228)
T ss_pred Cchhc-----------C----HHHHHHHHHHcCCEEEEEEccCCeEecCCCeEcCCCCHHHHHHHHHHH-hCEEEE
Confidence 63221 1 12333444444444455554222 1 12444555666677766 665544
No 465
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=71.76 E-value=50 Score=28.09 Aligned_cols=73 Identities=10% Similarity=0.053 Sum_probs=40.7
Q ss_pred CCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeeeccccchHHHhhc
Q psy2895 103 LKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNHNIETVPRLYKKV 182 (293)
Q Consensus 103 ~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~less~~~~~~i 182 (293)
.|+..|-.--|.-.+....+.+.+.++.+.++...++.. +...++.+ .+.+-.+..+|++.+.++ ++++++|
T Consensus 121 aGa~yispyvgRi~d~g~dg~~~v~~~~~~~~~~~~~tk--IlaAS~r~--~~~v~~~~~~G~d~vTip----~~vl~~l 192 (213)
T TIGR00875 121 AGATYVSPFVGRLDDIGGDGMKLIEEVKTIFENHAPDTE--VIAASVRH--PRHVLEAALIGADIATMP----LDVMQQL 192 (213)
T ss_pred cCCCEEEeecchHHHcCCCHHHHHHHHHHHHHHcCCCCE--EEEeccCC--HHHHHHHHHcCCCEEEcC----HHHHHHH
Confidence 477666444333222222235566677666666544444 43323444 445555556899999987 4566665
Q ss_pred C
Q psy2895 183 R 183 (293)
Q Consensus 183 ~ 183 (293)
.
T Consensus 193 ~ 193 (213)
T TIGR00875 193 F 193 (213)
T ss_pred H
Confidence 4
No 466
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=71.73 E-value=16 Score=33.94 Aligned_cols=113 Identities=13% Similarity=0.101 Sum_probs=55.6
Q ss_pred HHHHHHHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeE---Eeec-CCCHHHHHHHHHHH
Q psy2895 154 NHVLKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGI---MVGL-GENDEEILTVIHDM 229 (293)
Q Consensus 154 ~e~l~~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~---ivG~-gEt~ed~~~~l~~l 229 (293)
.+.++++.+.|+..+.+- + -.+|..+++-+.+.++.+++.+|++.+.+-- +.=+ ....-...+.++.|
T Consensus 96 ~~~~~~~~~~G~~Evli~--g------G~~p~~~~~y~~~~~~~ik~~~p~~~i~a~s~~ei~~~~~~~~~s~~E~l~~L 167 (370)
T COG1060 96 LEEVREAVKRGITEVLIV--G------GEHPELSLEYYEELFRTIKEEFPDLHIHALSAGEILFLAREGGLSYEEVLKRL 167 (370)
T ss_pred HHHHHHHHHcCCeEEEEe--c------CcCCCcchHHHHHHHHHHHHhCcchhhcccCHHHhHHHHhccCCCHHHHHHHH
Confidence 344555555677776641 0 1234445556677777777766666432211 1111 22333344555666
Q ss_pred HhCCCCEEEeec--CCCCC-CCccccccccChhHHHHHHHHHHHhcccc
Q psy2895 230 RNHNIDILTIGQ--YLMPS-RLHLPVHRYLHPKFFEKFKKIAYKLGFKN 275 (293)
Q Consensus 230 ~~l~~~~i~i~~--~~~p~-~~~~a~~r~~~p~~~~~~~~~~~~~G~~~ 275 (293)
++.|.+.++.+. ++... .+.++ ..=..++.+.++.+.|.++|+..
T Consensus 168 k~aGldsmpg~~aeil~e~vr~~~~-p~K~~~~~wle~~~~Ah~lGI~~ 215 (370)
T COG1060 168 KEAGLDSMPGGGAEILSEEVRKIHC-PPKKSPEEWLEIHERAHRLGIPT 215 (370)
T ss_pred HHcCCCcCcCcceeechHHHHHhhC-CCCCCHHHHHHHHHHHHHcCCCc
Confidence 677777665531 11100 01121 11134555666666777777654
No 467
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=71.69 E-value=79 Score=28.65 Aligned_cols=82 Identities=12% Similarity=0.172 Sum_probs=50.7
Q ss_pred HHHHHHHHhCCCceeeEeEEeec-CC------CHHHHHHHHHHHHh-CCCCEEEeecCCCCCCCccccccccChhHHHHH
Q psy2895 193 NLLKNFKKLYPNILTKSGIMVGL-GE------NDEEILTVIHDMRN-HNIDILTIGQYLMPSRLHLPVHRYLHPKFFEKF 264 (293)
Q Consensus 193 ~~i~~~~~~~pgi~~~~~~ivG~-gE------t~ed~~~~l~~l~~-l~~~~i~i~~~~~p~~~~~a~~r~~~p~~~~~~ 264 (293)
+.++.+.+. |--+...+.-.+ ++ |.+++.++++.+.+ .|+++|.+..=+.-... ....+-.+..+..+
T Consensus 217 e~iraia~~--GGviGi~~~~~fl~~~~~~~~~~~~~~~Hi~y~~~l~G~dhVgiGsDfdg~~~--~~~gl~~~~~~~~l 292 (320)
T PF01244_consen 217 EQIRAIAER--GGVIGINFYPAFLGDDWDPRASLDDLVDHIDYIVDLVGIDHVGIGSDFDGIDG--PPEGLEDPSDLPNL 292 (320)
T ss_dssp HHHHHHHHT--T-EEEEESSHHHHSTTHSSG-BHHHHHHHHHHHHHHH-GGGEEEE--BTTTSS--HBBTBSSGGGHHHH
T ss_pred HHHHHHHHC--CcEEEEEcchhhhcccccccccHHHHHHHHHHHHHhcCCCeEEECcccCCCCC--CCCccCCHHHHHHH
Confidence 445566677 776777777666 54 79999999999877 48999988632211111 01223345667788
Q ss_pred HHHHHHhcccchhc
Q psy2895 265 KKIAYKLGFKNVLV 278 (293)
Q Consensus 265 ~~~~~~~G~~~~~~ 278 (293)
.+...+.|+..-.+
T Consensus 293 ~~~L~~rG~s~~~i 306 (320)
T PF01244_consen 293 TEELLKRGYSEEDI 306 (320)
T ss_dssp HHHHHHTTS-HHHH
T ss_pred HHHHHHCCCCHHHH
Confidence 77777778875443
No 468
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=71.68 E-value=41 Score=29.65 Aligned_cols=84 Identities=8% Similarity=0.010 Sum_probs=52.5
Q ss_pred CCCCChhHHHHHHHHHHHCCCcEEEEeee--cCCCCCCCChhHHHHHHHHHHhhCCC-cEEEEEcCCC-cCcHHHHHHHH
Q psy2895 85 PDPLDIEEPKKIAYTINKLKLNYVVITSV--NRDDLHDGGSSHFVSCIKHIRKLSTK-IKIEILIPDF-RNQINHVLKIF 160 (293)
Q Consensus 85 ~~~~~~eei~~~~~~~~~~G~~~i~l~gg--~~~~l~~~~~~~~~~ll~~i~~~~~~-~~i~~~~~~~-~~~~~e~l~~l 160 (293)
...++.+...+.++.+.+.|++.+++.|. +...+ +.+...++++.+.+...+ +.+-+...+. ..+..+.++..
T Consensus 15 dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~l---t~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a 91 (284)
T cd00950 15 DGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTL---SDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRA 91 (284)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhC---CHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHH
Confidence 34689999999999999999998877654 33333 356666777766665432 2232222211 11124566667
Q ss_pred HHcCCCeeeec
Q psy2895 161 KQALPDVLNHN 171 (293)
Q Consensus 161 ~~aG~~~i~~~ 171 (293)
+++|+|.+.+.
T Consensus 92 ~~~G~d~v~~~ 102 (284)
T cd00950 92 EKAGADAALVV 102 (284)
T ss_pred HHcCCCEEEEc
Confidence 77899987653
No 469
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=71.64 E-value=74 Score=28.31 Aligned_cols=108 Identities=12% Similarity=0.132 Sum_probs=67.4
Q ss_pred ChhHHHHHHHHHHHC----CCcEEEEeeec--C----CCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHH
Q psy2895 89 DIEEPKKIAYTINKL----KLNYVVITSVN--R----DDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLK 158 (293)
Q Consensus 89 ~~eei~~~~~~~~~~----G~~~i~l~gg~--~----~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~ 158 (293)
|.|.+++.++.+.+. |+..++=.+-. + .++...+.+.=+++++++++.+ ++.+.| +..+ .+.++
T Consensus 28 s~e~~~~~A~~lk~~~~~~g~~~i~kgsfkKApRTSp~sFrG~G~eeGL~iL~~vk~~~---glpvvT-eV~~--~~q~~ 101 (290)
T PLN03033 28 SEEHILRMAKHIKDISTKLGLPLVFKSSFDKANRTSSKSFRGPGMAEGLKILEKVKVAY---DLPIVT-DVHE--SSQCE 101 (290)
T ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHHH---CCceEE-eeCC--HHHHH
Confidence 567788888888764 88766544433 2 1121123345567888888864 455544 4444 67788
Q ss_pred HHHHcCCCeeeecccc--chHHHhhcC---------CC--CCHHHHHHHHHHHHHhCCCc
Q psy2895 159 IFKQALPDVLNHNIET--VPRLYKKVR---------PG--SDYKHSLNLLKNFKKLYPNI 205 (293)
Q Consensus 159 ~l~~aG~~~i~~~les--s~~~~~~i~---------~~--~~~e~~l~~i~~~~~~~pgi 205 (293)
...+. +|.+.++.=. .-++++... ++ -+.++|+.+++++... |-
T Consensus 102 ~vae~-~DilQIgAr~~rqtdLL~a~~~tgkpV~lKkGq~~t~~e~~~aaeki~~~--GN 158 (290)
T PLN03033 102 AVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCAPSVMRNSAEKVRLA--GN 158 (290)
T ss_pred HHHhh-CcEEeeCcHHHHHHHHHHHHHccCCeEEeCCCCCCCHHHHHHHHHHHHHc--CC
Confidence 87776 7988887532 124443222 22 2789999999999887 64
No 470
>PRK08508 biotin synthase; Provisional
Probab=71.55 E-value=72 Score=28.17 Aligned_cols=142 Identities=13% Similarity=0.078 Sum_probs=79.3
Q ss_pred HHHHHHHCCCcEEEEe--eecC--CCC-CCCChhHHHHHHHHHHhhCCCcEEEEEc---CCCcCc---HHHHHHHHHHcC
Q psy2895 96 IAYTINKLKLNYVVIT--SVNR--DDL-HDGGSSHFVSCIKHIRKLSTKIKIEILI---PDFRNQ---INHVLKIFKQAL 164 (293)
Q Consensus 96 ~~~~~~~~G~~~i~l~--gg~~--~~l-~~~~~~~~~~ll~~i~~~~~~~~i~~~~---~~~~~~---~~e~l~~l~~aG 164 (293)
.++.+.+.|+..+.+. +.+. +.. +..+++...+.++.+++. ++++++ .|+.++ ..+.+..+++.+
T Consensus 104 ~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~----Gi~v~sg~I~GlGEt~ed~~~~l~~lr~L~ 179 (279)
T PRK08508 104 QLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEA----GLGLCSGGIFGLGESWEDRISFLKSLASLS 179 (279)
T ss_pred HHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHc----CCeecceeEEecCCCHHHHHHHHHHHHcCC
Confidence 3455667788765431 1110 111 112345566677777665 344433 244333 356777888889
Q ss_pred CCeeeecccc-chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEeecCC
Q psy2895 165 PDVLNHNIET-VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIGQYL 243 (293)
Q Consensus 165 ~~~i~~~les-s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~~~~ 243 (293)
.+.+++++.. .+.+.-. .+.-+.++.++++..+|-..|...+.. --|......+ .-..+-..|++.+-+..|+
T Consensus 180 ~~svpl~~~~p~~~t~~~-~~~~~~~~~lr~iAv~Rl~lp~~~i~~--~~gr~~~~~~---~~~~~~~~g~n~~~~g~~l 253 (279)
T PRK08508 180 PHSTPINFFIPNPALPLK-APTLSADEALEIVRLAKEALPNARLMV--AGGREVVFGE---RQYEIFEAGANAIVIGDYL 253 (279)
T ss_pred CCEEeeCCcCCCCCCCCC-CCCCCHHHHHHHHHHHHHHCCCceeee--cCChhhhchh---hHHHHHhcCCcceeecCcc
Confidence 9988887654 2333211 234588999999999988877664321 1121111122 2244455778887777787
Q ss_pred CCCC
Q psy2895 244 MPSR 247 (293)
Q Consensus 244 ~p~~ 247 (293)
.+..
T Consensus 254 t~~g 257 (279)
T PRK08508 254 TTKG 257 (279)
T ss_pred cCCC
Confidence 7644
No 471
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=71.50 E-value=38 Score=32.57 Aligned_cols=70 Identities=20% Similarity=0.262 Sum_probs=51.7
Q ss_pred cHHHHHHHHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHHHh
Q psy2895 152 QINHVLKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRN 231 (293)
Q Consensus 152 ~~~e~l~~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l~~ 231 (293)
+..+.++.|.++|++.+.+. ++ + +|+ +..++.++++++.+|++. +|+|.+-|.+...++ .+
T Consensus 225 ~~~~ra~~Lv~aGVd~i~~D--~a-------~-g~~-~~~~~~i~~i~~~~~~~~----vi~g~~~t~~~~~~l----~~ 285 (475)
T TIGR01303 225 DVGGKAKALLDAGVDVLVID--TA-------H-GHQ-VKMISAIKAVRALDLGVP----IVAGNVVSAEGVRDL----LE 285 (475)
T ss_pred cHHHHHHHHHHhCCCEEEEe--CC-------C-CCc-HHHHHHHHHHHHHCCCCe----EEEeccCCHHHHHHH----HH
Confidence 34789999999999997763 21 1 333 778899999999877764 577888888776555 46
Q ss_pred CCCCEEEee
Q psy2895 232 HNIDILTIG 240 (293)
Q Consensus 232 l~~~~i~i~ 240 (293)
.|++.+.+.
T Consensus 286 ~G~d~i~vg 294 (475)
T TIGR01303 286 AGANIIKVG 294 (475)
T ss_pred hCCCEEEEC
Confidence 899988753
No 472
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=71.44 E-value=74 Score=28.26 Aligned_cols=172 Identities=15% Similarity=0.156 Sum_probs=92.5
Q ss_pred CChhHHHHHHHHHHHC--CCcEEEEeeecCCC-----CCCCChhHHHHHHHHHHhhCC-CcEEEEEcCCCcCcHHHHHHH
Q psy2895 88 LDIEEPKKIAYTINKL--KLNYVVITSVNRDD-----LHDGGSSHFVSCIKHIRKLST-KIKIEILIPDFRNQINHVLKI 159 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~--G~~~i~l~gg~~~~-----l~~~~~~~~~~ll~~i~~~~~-~~~i~~~~~~~~~~~~e~l~~ 159 (293)
.+++++.+.++.+.+. ++..|-|.-+.|.. ....+.+.+.++++.+++... .+.+++ .++. ++..+.++.
T Consensus 100 ~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi-~~~~-~~~~~~a~~ 177 (300)
T TIGR01037 100 SSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKL-SPNV-TDITEIAKA 177 (300)
T ss_pred CCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEC-CCCh-hhHHHHHHH
Confidence 4688999999888765 37777776554311 011345788899999987631 133443 2222 223567788
Q ss_pred HHHcCCCeeeec--ccc-chHHHh------hcCCCCC----HHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHH
Q psy2895 160 FKQALPDVLNHN--IET-VPRLYK------KVRPGSD----YKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVI 226 (293)
Q Consensus 160 l~~aG~~~i~~~--les-s~~~~~------~i~~~~~----~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l 226 (293)
+.++|+|.+.+. +.. ..+.+. .-..+.+ +.-.++.+..+++.. ++++ +..|=-.|.+|..+.+
T Consensus 178 l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~-~ipv---i~~GGI~s~~da~~~l 253 (300)
T TIGR01037 178 AEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMV-DIPI---IGVGGITSFEDALEFL 253 (300)
T ss_pred HHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcC-CCCE---EEECCCCCHHHHHHHH
Confidence 889999999762 111 001110 0001111 112356666676652 3322 1234357888877776
Q ss_pred HHHHhCCCCEEEeecCCCCCCCccccccccChhHHHHHHHHHHHhcccch
Q psy2895 227 HDMRNHNIDILTIGQYLMPSRLHLPVHRYLHPKFFEKFKKIAYKLGFKNV 276 (293)
Q Consensus 227 ~~l~~l~~~~i~i~~~~~p~~~~~a~~r~~~p~~~~~~~~~~~~~G~~~~ 276 (293)
. .|.+.+.+..-+.-.+ ++...-...+.+++.+.|++..
T Consensus 254 ~----~GAd~V~igr~~l~~p-------~~~~~i~~~l~~~~~~~g~~~~ 292 (300)
T TIGR01037 254 M----AGASAVQVGTAVYYRG-------FAFKKIIEGLIAFLKAEGFTSI 292 (300)
T ss_pred H----cCCCceeecHHHhcCc-------hHHHHHHHHHHHHHHHcCCCCH
Confidence 2 6888887752111111 1111224456666777787643
No 473
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=71.36 E-value=18 Score=31.08 Aligned_cols=21 Identities=19% Similarity=0.216 Sum_probs=14.1
Q ss_pred cCCCHHH-HHHHHHHHHhCCCC
Q psy2895 215 LGENDEE-ILTVIHDMRNHNID 235 (293)
Q Consensus 215 ~gEt~ed-~~~~l~~l~~l~~~ 235 (293)
+.|+..+ +.+.++.+++.|..
T Consensus 95 H~ea~~~~~~~~l~~ik~~G~~ 116 (228)
T PTZ00170 95 HIEATEDDPKAVARKIREAGMK 116 (228)
T ss_pred eccCCchHHHHHHHHHHHCCCe
Confidence 3554444 77888888888754
No 474
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=71.07 E-value=42 Score=29.86 Aligned_cols=82 Identities=6% Similarity=0.055 Sum_probs=51.9
Q ss_pred CCCCChhHHHHHHHHHHH-CCCcEEEEeee--cCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEc--CCC-cCcHHHHHH
Q psy2895 85 PDPLDIEEPKKIAYTINK-LKLNYVVITSV--NRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILI--PDF-RNQINHVLK 158 (293)
Q Consensus 85 ~~~~~~eei~~~~~~~~~-~G~~~i~l~gg--~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~--~~~-~~~~~e~l~ 158 (293)
...++.+.+.+.++.+.+ .|++.+++.|. +...++ .+.-.++++.+.+...+ ++.+.. ... ..+..+..+
T Consensus 18 dg~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls---~eEr~~~~~~~~~~~~~-~~~viagvg~~~t~~ai~~a~ 93 (293)
T PRK04147 18 DGQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLS---TEEKKQVLEIVAEEAKG-KVKLIAQVGSVNTAEAQELAK 93 (293)
T ss_pred CCCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCC---HHHHHHHHHHHHHHhCC-CCCEEecCCCCCHHHHHHHHH
Confidence 356899999999999999 99999887664 433333 45666777766654332 233332 211 111244556
Q ss_pred HHHHcCCCeeee
Q psy2895 159 IFKQALPDVLNH 170 (293)
Q Consensus 159 ~l~~aG~~~i~~ 170 (293)
...++|+|.+.+
T Consensus 94 ~a~~~Gad~v~v 105 (293)
T PRK04147 94 YATELGYDAISA 105 (293)
T ss_pred HHHHcCCCEEEE
Confidence 667789998765
No 475
>cd03312 CIMS_N_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the N-terminal barrel, and a few single-barrel sequences most similar to the N-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains fro
Probab=71.00 E-value=87 Score=28.88 Aligned_cols=126 Identities=13% Similarity=0.102 Sum_probs=71.9
Q ss_pred HHHHHHHHHCCCcEEEEeeecCCCCCC-C---ChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeee
Q psy2895 94 KKIAYTINKLKLNYVVITSVNRDDLHD-G---GSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLN 169 (293)
Q Consensus 94 ~~~~~~~~~~G~~~i~l~gg~~~~l~~-~---~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~ 169 (293)
.++++++.+.|++.|.|- + |.+.. . ..+.+.+.++.+.+..|+..+.+.+. .+...+.+..|.+..+|.+.
T Consensus 185 ~~el~~L~~aG~~~IQiD--E-P~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~l~ty--fg~~~~~~~~l~~l~Vd~l~ 259 (360)
T cd03312 185 KELLKKLAAAGAEWVQID--E-PALVLDLPEEWLAAFKRAYEELAKAAPGLKLLLATY--FGSLGENLDLLASLPVDGLH 259 (360)
T ss_pred HHHHHHHHHCCCCEEEee--C-ChhhcCCCHHHHHHHHHHHHHHhcCCCCCcEEEEec--ccchHHHHHHHHcCCCCEEE
Confidence 345677788899987763 2 33321 1 12445555666655444445555442 11114678888888999887
Q ss_pred eccccchHHHhhcCCCCCHHHHHHHHHHHHHhCC-CceeeEeEEeec---CCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 170 HNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYP-NILTKSGIMVGL---GENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 170 ~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~p-gi~~~~~~ivG~---gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
+-+... . ..++.+++..| +-.+..|+|=|. -|+.+++.+.++.+.+.=.+.+.++
T Consensus 260 le~~~~---------~-------~~l~~l~~~~~~~k~l~lGvId~rn~~~ed~e~i~~~i~~a~~~v~~~l~ls 318 (360)
T cd03312 260 LDLVRG---------P-------ENLEAVLKAGFADKVLSAGVVDGRNIWRADLAASLALLETLAAILGDRLVVS 318 (360)
T ss_pred EEecCC---------c-------ccHHHHHhcCCCCCEEEEEEEcCCCCCcCCHHHHHHHHHHHHHHhcCcEEEE
Confidence 654221 1 12223333212 344677777776 5888888888877766226667665
No 476
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=70.89 E-value=50 Score=26.75 Aligned_cols=68 Identities=13% Similarity=0.179 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeee
Q psy2895 91 EEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNH 170 (293)
Q Consensus 91 eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~ 170 (293)
+++.+.++++.+.|+..|.+.-.+. +.....++++.+++.....+++++.++ .++...++|++.+++
T Consensus 12 ~~~~~~l~~l~~~g~~~i~lr~~~~------~~~~~~~~~~~i~~~~~~~~~~l~~~~-------~~~~a~~~g~~~vh~ 78 (196)
T cd00564 12 EDLLEVVEAALKGGVTLVQLREKDL------SARELLELARALRELCRKYGVPLIIND-------RVDLALAVGADGVHL 78 (196)
T ss_pred chHHHHHHHHHhcCCCEEEEeCCCC------CHHHHHHHHHHHHHHHHHhCCeEEEeC-------hHHHHHHcCCCEEec
Confidence 4567778888888999887754332 123445566666654323355665432 344556789998876
Q ss_pred c
Q psy2895 171 N 171 (293)
Q Consensus 171 ~ 171 (293)
+
T Consensus 79 ~ 79 (196)
T cd00564 79 G 79 (196)
T ss_pred C
Confidence 5
No 477
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=70.81 E-value=1.1e+02 Score=30.41 Aligned_cols=48 Identities=13% Similarity=0.067 Sum_probs=32.4
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCC-----Ch-hHHHHHHHHHHh
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDG-----GS-SHFVSCIKHIRK 135 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~-----~~-~~~~~ll~~i~~ 135 (293)
.+..++.+.+..+...|++.|.+..|+++...+. .+ -+..++++.+++
T Consensus 393 ~n~~~l~~~L~~~~~~Gv~nILaLrGD~p~~g~~~~~~~vfd~~a~dLv~~ir~ 446 (612)
T PRK08645 393 RNLIGLQSHLLGLHALGIRNVLAITGDPAKVGDFPGATSVYDLNSFGLIKLIKQ 446 (612)
T ss_pred cCHHHHHHHHHHHHHcCCceEEEccCCCCCCCCCCCCCCCccccHHHHHHHHHH
Confidence 5678888888888899999998888886532110 01 134567776666
No 478
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=70.80 E-value=72 Score=27.86 Aligned_cols=105 Identities=12% Similarity=0.123 Sum_probs=62.2
Q ss_pred ChhHHHHHHHHHHHCCCcEEEEeeecCC----CCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcC
Q psy2895 89 DIEEPKKIAYTINKLKLNYVVITSVNRD----DLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQAL 164 (293)
Q Consensus 89 ~~eei~~~~~~~~~~G~~~i~l~gg~~~----~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG 164 (293)
|.|.+.+.++.+.+.|+..+.=.+-.+. ++...+.+.+.. +.++++. .++.+.+ +..+ .+.++.+.+ .
T Consensus 27 s~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~-L~~~~~~---~Gl~~~T-ev~d--~~~v~~~~e-~ 98 (250)
T PRK13397 27 SYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRY-LHEVCQE---FGLLSVS-EIMS--ERQLEEAYD-Y 98 (250)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHH-HHHHHHH---cCCCEEE-eeCC--HHHHHHHHh-c
Confidence 5788999999999999876543333321 111123344433 3344443 3455554 2233 667888877 6
Q ss_pred CCeeeecc-cc-chHHHhhcC---------CC--CCHHHHHHHHHHHHHh
Q psy2895 165 PDVLNHNI-ET-VPRLYKKVR---------PG--SDYKHSLNLLKNFKKL 201 (293)
Q Consensus 165 ~~~i~~~l-es-s~~~~~~i~---------~~--~~~e~~l~~i~~~~~~ 201 (293)
+|.+.++- +. .-++++.+. ++ .+.++|+.+++.+++.
T Consensus 99 vdilqIgs~~~~n~~LL~~va~tgkPVilk~G~~~t~~e~~~A~e~i~~~ 148 (250)
T PRK13397 99 LDVIQVGARNMQNFEFLKTLSHIDKPILFKRGLMATIEEYLGALSYLQDT 148 (250)
T ss_pred CCEEEECcccccCHHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 99999864 33 345555543 22 2677788888877776
No 479
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=70.75 E-value=22 Score=32.57 Aligned_cols=81 Identities=12% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCeeeecc----------cc-chHHHhhcCCCC--CHHHHHHHHHHHHHhCCCceeeEeEEeec--C---
Q psy2895 155 HVLKIFKQALPDVLNHNI----------ET-VPRLYKKVRPGS--DYKHSLNLLKNFKKLYPNILTKSGIMVGL--G--- 216 (293)
Q Consensus 155 e~l~~l~~aG~~~i~~~l----------es-s~~~~~~i~~~~--~~e~~l~~i~~~~~~~pgi~~~~~~ivG~--g--- 216 (293)
+..++.+++|.|.|.+.. -. +..--+...... ...-.+++++.+++. +..++.+|+ +
T Consensus 145 ~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~-----vg~~~~v~iRl~~~~ 219 (343)
T cd04734 145 DAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAA-----VGPDFIVGIRISGDE 219 (343)
T ss_pred HHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHH-----cCCCCeEEEEeehhh
Q ss_pred -----CCHHHHHHHHHHHHhCC-CCEEEee
Q psy2895 217 -----ENDEEILTVIHDMRNHN-IDILTIG 240 (293)
Q Consensus 217 -----Et~ed~~~~l~~l~~l~-~~~i~i~ 240 (293)
.|.+|..+.++.+.+.| +|.+.++
T Consensus 220 ~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs 249 (343)
T cd04734 220 DTEGGLSPDEALEIAARLAAEGLIDYVNVS 249 (343)
T ss_pred ccCCCCCHHHHHHHHHHHHhcCCCCEEEeC
No 480
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=70.66 E-value=1.3e+02 Score=30.84 Aligned_cols=126 Identities=13% Similarity=0.192 Sum_probs=72.5
Q ss_pred HHHHHHHHHCCCcEEEEeeecCCCCC-CC---ChhHHHHHHHHHHhhCCCcEEEEEcC-CCcCcHHHHHHHHHHcC-CCe
Q psy2895 94 KKIAYTINKLKLNYVVITSVNRDDLH-DG---GSSHFVSCIKHIRKLSTKIKIEILIP-DFRNQINHVLKIFKQAL-PDV 167 (293)
Q Consensus 94 ~~~~~~~~~~G~~~i~l~gg~~~~l~-~~---~~~~~~~ll~~i~~~~~~~~i~~~~~-~~~~~~~e~l~~l~~aG-~~~ 167 (293)
.++++++.+.|+..|.+- + |.+. +. ..+.+.+..+.+.+..++..+.+.|- |-.. .+.+..+.+.. ++.
T Consensus 189 ~~~l~~L~~~Gv~~IQiD--E-P~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~TyFg~~~--~~~~~~l~~lp~Vd~ 263 (766)
T PLN02475 189 KEVIAELKAAGASWIQFD--E-PALVMDLESHKLQAFKTAYAELESTLSGLNVLVETYFADVP--AEAYKTLTSLKGVTA 263 (766)
T ss_pred HHHHHHHHHCCCCEEEEe--C-chhhcCCCHHHHHHHHHHHHHHHhccCCCeEEEEccCCCCC--HHHHHHHHcCCCCCE
Confidence 345677778899987663 3 4442 21 23445556666654333344544442 2222 24677877777 998
Q ss_pred eeeccccchHHHhhcCCCCCHHHHHHHHHHHHHh-CC-CceeeEeEEeec---CCCHHHHHHHHHHHHh-CCCCEEEee
Q psy2895 168 LNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKL-YP-NILTKSGIMVGL---GENDEEILTVIHDMRN-HNIDILTIG 240 (293)
Q Consensus 168 i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~-~p-gi~~~~~~ivG~---gEt~ed~~~~l~~l~~-l~~~~i~i~ 240 (293)
+++-+= + +. +.+..+.+. +| +..++.|+|=|. -++.++..+.++.+.+ ++.+.+.+.
T Consensus 264 l~lD~v---------~-~~------~~L~~l~~~~~p~~k~L~~GVVDgRNiw~~dl~~~~~~i~~~~~~~~~~~l~v~ 326 (766)
T PLN02475 264 FGFDLV---------R-GT------KTLDLIKKAGFPSGKYLFAGVVDGRNIWANDLAASLATLQALEGIVGKDKLVVS 326 (766)
T ss_pred EEEEec---------C-Ch------hhHHHHHhccCCCCCeEEEEEEeCCCcccCCHHHHHHHHHHHHHhcCCCcEEEe
Confidence 887531 1 11 223334332 23 556788888887 5677777777777766 676777775
No 481
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=70.65 E-value=31 Score=28.20 Aligned_cols=115 Identities=10% Similarity=0.148 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeee
Q psy2895 90 IEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLN 169 (293)
Q Consensus 90 ~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~ 169 (293)
.++..+.++++.+.|+..|.+--.+ + +...+.++++.+.+.....++.+..++ ..+...+.|++.++
T Consensus 11 ~~~~~~~l~~~~~~gv~~v~lR~k~---~---~~~~~~~~a~~l~~~~~~~~~~liin~-------~~~la~~~~~dGvH 77 (180)
T PF02581_consen 11 GDDFLEQLEAALAAGVDLVQLREKD---L---SDEELLELARRLAELCQKYGVPLIIND-------RVDLALELGADGVH 77 (180)
T ss_dssp TCHHHHHHHHHHHTT-SEEEEE-SS---S----HHHHHHHHHHHHHHHHHTTGCEEEES--------HHHHHHCT-SEEE
T ss_pred cchHHHHHHHHHHCCCcEEEEcCCC---C---CccHHHHHHHHHHHHhhcceEEEEecC-------CHHHHHhcCCCEEE
Confidence 5667888888889999988875322 2 245666666666543211223343322 23334458999999
Q ss_pred eccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHHHHHhCCCCEEEeecCCC
Q psy2895 170 HNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHDMRNHNIDILTIGQYLM 244 (293)
Q Consensus 170 ~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~~l~~l~~~~i~i~~~~~ 244 (293)
++.+.. ...+. +..... + .++|. -.|.++ +..+.+.++|++.+++.++
T Consensus 78 l~~~~~-----------~~~~~----r~~~~~--~------~~ig~S~h~~~e----~~~a~~~g~dYv~~gpvf~ 126 (180)
T PF02581_consen 78 LGQSDL-----------PPAEA----RKLLGP--D------KIIGASCHSLEE----AREAEELGADYVFLGPVFP 126 (180)
T ss_dssp EBTTSS-----------SHHHH----HHHHTT--T------SEEEEEESSHHH----HHHHHHCTTSEEEEETSS-
T ss_pred eccccc-----------chHHh----hhhccc--c------eEEEeecCcHHH----HHHhhhcCCCEEEECCccC
Confidence 985321 11111 111111 2 35666 566666 4555689999999987654
No 482
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=70.62 E-value=78 Score=28.20 Aligned_cols=112 Identities=18% Similarity=0.240 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHHhhC--CCcEEEEEcCCCcCcHHHHHHHHHHc---CCCeeeeccccchHHHhhcCCCCCHHHHHHHHHH
Q psy2895 123 SSHFVSCIKHIRKLS--TKIKIEILIPDFRNQINHVLKIFKQA---LPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKN 197 (293)
Q Consensus 123 ~~~~~~ll~~i~~~~--~~~~i~~~~~~~~~~~~e~l~~l~~a---G~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~ 197 (293)
.+.+.+.++..++.. ++..+-+...+..++..+.++.+.+. |+|.+.+++-. +.+-....-..+++...+.++.
T Consensus 73 ~~~~~~~i~~~~~~~~~~~~pvivsi~g~~~~~~~~~~~~~~~~~~~ad~ielN~sC-Pn~~~~~~~~~~~~~~~~i~~~ 151 (294)
T cd04741 73 LDYYLEYIRTISDGLPGSAKPFFISVTGSAEDIAAMYKKIAAHQKQFPLAMELNLSC-PNVPGKPPPAYDFDATLEYLTA 151 (294)
T ss_pred HHHHHHHHHHHhhhccccCCeEEEECCCCHHHHHHHHHHHHhhccccccEEEEECCC-CCCCCcccccCCHHHHHHHHHH
Confidence 456666665554421 12222222222222223344555444 57888777643 2111111113467888888888
Q ss_pred HHHhCCCceeeEeEEeec--CCCHHHHHHHHHHHHhC--CCCEEEee
Q psy2895 198 FKKLYPNILTKSGIMVGL--GENDEEILTVIHDMRNH--NIDILTIG 240 (293)
Q Consensus 198 ~~~~~pgi~~~~~~ivG~--gEt~ed~~~~l~~l~~l--~~~~i~i~ 240 (293)
+++.. .++ +++-+ +.+.+++.+.++.+.+. |++.+.+.
T Consensus 152 v~~~~-~iP----v~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~ 193 (294)
T cd04741 152 VKAAY-SIP----VGVKTPPYTDPAQFDTLAEALNAFACPISFITAT 193 (294)
T ss_pred HHHhc-CCC----EEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEE
Confidence 88762 233 34444 55667788888888888 88877754
No 483
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=70.34 E-value=46 Score=28.90 Aligned_cols=78 Identities=15% Similarity=0.136 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhCCCcEEEEEc--C-----CCc-CcHHHHHHHHHHcCCCeeeeccccchHHHhhcC-----CCCCHHHHH
Q psy2895 126 FVSCIKHIRKLSTKIKIEILI--P-----DFR-NQINHVLKIFKQALPDVLNHNIETVPRLYKKVR-----PGSDYKHSL 192 (293)
Q Consensus 126 ~~~ll~~i~~~~~~~~i~~~~--~-----~~~-~~~~e~l~~l~~aG~~~i~~~less~~~~~~i~-----~~~~~e~~l 192 (293)
+.+.++.+++.+-+ .|++.. + +.. ...++.-+.+.++|+....+......--+.... +....+.+.
T Consensus 15 l~~~l~~~~~~G~~-~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 93 (275)
T PRK09856 15 IEHAFRDASELGYD-GIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIK 93 (275)
T ss_pred HHHHHHHHHHcCCC-EEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHHHH
Confidence 56777777776422 455532 1 111 112444455667787655543211000000000 112345566
Q ss_pred HHHHHHHHhCCCce
Q psy2895 193 NLLKNFKKLYPNIL 206 (293)
Q Consensus 193 ~~i~~~~~~~pgi~ 206 (293)
+.++.+... |..
T Consensus 94 ~~i~~a~~l--Ga~ 105 (275)
T PRK09856 94 LAMDMAKEM--NAG 105 (275)
T ss_pred HHHHHHHHh--CCC
Confidence 667777777 774
No 484
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=70.27 E-value=45 Score=30.29 Aligned_cols=87 Identities=17% Similarity=0.218 Sum_probs=64.2
Q ss_pred HHHHHHHHHcCCCeeeecccc-chHHHhhcCCC---CCHHHHHHHHHHHHHhCCCceeeEeEEeecCCCHHHHHHHHHHH
Q psy2895 154 NHVLKIFKQALPDVLNHNIET-VPRLYKKVRPG---SDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDM 229 (293)
Q Consensus 154 ~e~l~~l~~aG~~~i~~~les-s~~~~~~i~~~---~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~gEt~ed~~~~l~~l 229 (293)
.+..+.+.+.|.+.|.++.=- ++++.+.-... .+++...+.++.++++.+.+++++-+=+|..+..-...+..+.+
T Consensus 82 ~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~ 161 (323)
T COG0042 82 AEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARIL 161 (323)
T ss_pred HHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHH
Confidence 566677777888888887755 57777654432 37888999999999985448888888887622222355677888
Q ss_pred HhCCCCEEEee
Q psy2895 230 RNHNIDILTIG 240 (293)
Q Consensus 230 ~~l~~~~i~i~ 240 (293)
.+.|++.+.++
T Consensus 162 ~~~g~~~ltVH 172 (323)
T COG0042 162 EDAGADALTVH 172 (323)
T ss_pred HhcCCCEEEEe
Confidence 89999999997
No 485
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=70.24 E-value=90 Score=28.72 Aligned_cols=77 Identities=5% Similarity=-0.094 Sum_probs=47.4
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhC-CCcEEEEEcC-CCcC-cHHHHHHHHHHcC
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLS-TKIKIEILIP-DFRN-QINHVLKIFKQAL 164 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~-~~~~i~~~~~-~~~~-~~~e~l~~l~~aG 164 (293)
.++++..+.++++.+.|++.+-+.++.... .+.-.+.++.+++.. +++.+.+=.+ ++.. +-.+.++.|.+.+
T Consensus 142 ~~~~~~~~~a~~~~~~Gf~~~Kik~~~~~~-----~~~di~~i~~vR~~~G~~~~l~vDan~~~~~~~A~~~~~~l~~~~ 216 (368)
T cd03329 142 ESPEAYADFAEECKALGYRAIKLHPWGPGV-----VRRDLKACLAVREAVGPDMRLMHDGAHWYSRADALRLGRALEELG 216 (368)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCchh-----HHHHHHHHHHHHHHhCCCCeEEEECCCCcCHHHHHHHHHHhhhcC
Confidence 378889999999999999998776442211 234567888888764 5666666333 3321 1123445555556
Q ss_pred CCeee
Q psy2895 165 PDVLN 169 (293)
Q Consensus 165 ~~~i~ 169 (293)
+..+-
T Consensus 217 l~~iE 221 (368)
T cd03329 217 FFWYE 221 (368)
T ss_pred CCeEe
Confidence 65554
No 486
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=70.13 E-value=37 Score=30.22 Aligned_cols=96 Identities=7% Similarity=0.071 Sum_probs=48.7
Q ss_pred cCCCCcCcccCCCCCCCCChhHHHHHHHHHHHC---CCc---EEEEeeecCCCCCCCChhHHHHHHHHHHhhCCC---cE
Q psy2895 71 CTRRCKFCNISHGRPDPLDIEEPKKIAYTINKL---KLN---YVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTK---IK 141 (293)
Q Consensus 71 C~~~C~fC~~~~~~~~~~~~eei~~~~~~~~~~---G~~---~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~---~~ 141 (293)
|.+.|.|+.-...+ .+++-+.+.++.+.+. |+. .|.|. +++-...+..+.++++.+++..|. +.
T Consensus 139 ~~~~~~~~~EDasr---~~~~~l~~~~~~~~~~~~~g~~~~~~i~la----DTvG~a~P~~v~~~~~~l~~~~~~~~~~~ 211 (284)
T cd07942 139 TDWRFEYSPESFSD---TELDFALEVCEAVIDVWQPTPENKIILNLP----ATVEVATPNVYADQIEWFCRNLSRRESVI 211 (284)
T ss_pred ceEEEEECCccCCC---CCHHHHHHHHHHHHHhhcCCCCcceEEEcc----ccccccCHHHHHHHHHHHHHhcCCCCCce
Confidence 44455555433222 3567777777777655 433 55442 112112245677777777766542 22
Q ss_pred EEEEc-CCCcCcHHHHHHHHHHcCCCeeeecccc
Q psy2895 142 IEILI-PDFRNQINHVLKIFKQALPDVLNHNIET 174 (293)
Q Consensus 142 i~~~~-~~~~~~~~e~l~~l~~aG~~~i~~~les 174 (293)
+.+.. +++.--+...+..+ ++|++++...+.+
T Consensus 212 ~~~H~Hnd~G~a~AN~laA~-~aG~~~id~~~~g 244 (284)
T cd07942 212 ISLHPHNDRGTGVAAAELAL-LAGADRVEGTLFG 244 (284)
T ss_pred EEEEecCCCchHHHHHHHHH-HhCCCEEEeeCcc
Confidence 44322 22211114456666 4788888765443
No 487
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=70.04 E-value=51 Score=25.81 Aligned_cols=76 Identities=14% Similarity=0.056 Sum_probs=45.1
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCc--C--cHHHHHHHHHH
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFR--N--QINHVLKIFKQ 162 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~--~--~~~e~l~~l~~ 162 (293)
..+++++.+.+. +.+.+-|.++.-... ....+.++++.+++..+. .+.+...|.. . +-.+..+.+++
T Consensus 40 ~vp~e~i~~~a~---~~~~d~V~lS~~~~~-----~~~~~~~~~~~L~~~~~~-~~~i~vGG~~~~~~~~~~~~~~~l~~ 110 (137)
T PRK02261 40 MTSQEEFIDAAI---ETDADAILVSSLYGH-----GEIDCRGLREKCIEAGLG-DILLYVGGNLVVGKHDFEEVEKKFKE 110 (137)
T ss_pred CCCHHHHHHHHH---HcCCCEEEEcCcccc-----CHHHHHHHHHHHHhcCCC-CCeEEEECCCCCCccChHHHHHHHHH
Confidence 367888886664 456777776654321 245778888888877432 2333322111 1 11556678888
Q ss_pred cCCCeeeec
Q psy2895 163 ALPDVLNHN 171 (293)
Q Consensus 163 aG~~~i~~~ 171 (293)
.|++.+..+
T Consensus 111 ~G~~~vf~~ 119 (137)
T PRK02261 111 MGFDRVFPP 119 (137)
T ss_pred cCCCEEECc
Confidence 898877653
No 488
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=70.00 E-value=26 Score=31.50 Aligned_cols=79 Identities=16% Similarity=0.228 Sum_probs=49.5
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCC------CChhHHHHHHHHHHhhCCCcEEEEEcC-CCcCcHHHHHHHH
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHD------GGSSHFVSCIKHIRKLSTKIKIEILIP-DFRNQINHVLKIF 160 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~------~~~~~~~~ll~~i~~~~~~~~i~~~~~-~~~~~~~e~l~~l 160 (293)
.+.++..+.++.+.+.|+..|.++++....... .......+.++.+++.. .+.+... ++.+ .+.++.+
T Consensus 225 ~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~---~iPVi~~Ggi~t--~~~a~~~ 299 (327)
T cd02803 225 LTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV---KIPVIAVGGIRD--PEVAEEI 299 (327)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHC---CCCEEEeCCCCC--HHHHHHH
Confidence 567888999999999999999888776321100 01134456777777753 3344433 4444 4445555
Q ss_pred HHc-CCCeeeec
Q psy2895 161 KQA-LPDVLNHN 171 (293)
Q Consensus 161 ~~a-G~~~i~~~ 171 (293)
-+. |+|.+.++
T Consensus 300 l~~g~aD~V~ig 311 (327)
T cd02803 300 LAEGKADLVALG 311 (327)
T ss_pred HHCCCCCeeeec
Confidence 555 78888775
No 489
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=69.92 E-value=94 Score=29.49 Aligned_cols=110 Identities=15% Similarity=0.177 Sum_probs=64.8
Q ss_pred HHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCeeeecccc
Q psy2895 95 KIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNHNIET 174 (293)
Q Consensus 95 ~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~les 174 (293)
+.++.+.+.|++.|.+-- .++ +...+.++++.+++.....++.++.++ ..+...+.|.+.+|++.+.
T Consensus 221 ~~ve~aL~aGv~~VQLRe---K~l---s~~el~~la~~l~~l~~~~gv~LiIND-------~~dlAl~~gAdGVHLGQeD 287 (437)
T PRK12290 221 EWIERLLPLGINTVQLRI---KDP---QQADLEQQIIRAIALGREYNAQVFIND-------YWQLAIKHQAYGVHLGQED 287 (437)
T ss_pred HHHHHHHhCCCCEEEEeC---CCC---CHHHHHHHHHHHHHHHHHhCCEEEEEC-------HHHHHHHcCCCEEEcChHH
Confidence 346777888999887742 223 235666666666654323356665543 2333345799999998543
Q ss_pred chHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec-CCCHHHHHHHHHHHHhCCCCEEEeecCCC
Q psy2895 175 VPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHDMRNHNIDILTIGQYLM 244 (293)
Q Consensus 175 s~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-gEt~ed~~~~l~~l~~l~~~~i~i~~~~~ 244 (293)
.+ ...+++.. ..+.++|+ -.+.+|+ ....+.|+|++.+.++++
T Consensus 288 L~------------------~~~aR~il-----g~~~iIGvStHs~eEl----~~A~~~gaDYI~lGPIFp 331 (437)
T PRK12290 288 LE------------------EANLAQLT-----DAGIRLGLSTHGYYEL----LRIVQIQPSYIALGHIFP 331 (437)
T ss_pred cc------------------hhhhhhhc-----CCCCEEEEecCCHHHH----HHHhhcCCCEEEECCccC
Confidence 10 01112221 12457788 6777665 334568999999987664
No 490
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=69.90 E-value=64 Score=29.21 Aligned_cols=71 Identities=13% Similarity=0.142 Sum_probs=40.3
Q ss_pred HHHHHHHHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCce-eeEeEEe--e----cCCCHHHHHHH
Q psy2895 153 INHVLKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNIL-TKSGIMV--G----LGENDEEILTV 225 (293)
Q Consensus 153 ~~e~l~~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~-~~~~~iv--G----~gEt~ed~~~~ 225 (293)
..+.++.|+++|+. +..++. +++.+ +.+.+.+.+..+.+.+. |+. ....... | +.-+.++..+.
T Consensus 222 ~~~ai~~L~~~Gi~---v~~qtv--llkgi--NDn~~~l~~L~~~l~~~--gv~pyyl~~~~p~gg~~~f~v~~~~~~~i 292 (321)
T TIGR03821 222 VADALAKLRNAGIT---LLNQSV--LLRGV--NDNADTLAALSERLFDA--GVLPYYLHLLDKVQGAAHFDVDDERARAL 292 (321)
T ss_pred HHHHHHHHHHcCCE---EEecce--eeCCC--CCCHHHHHHHHHHHHHc--CCeeCcccccCCCCCcccccCCHHHHHHH
Confidence 36677888888864 333331 11111 23677777777777777 773 3333222 2 13466777777
Q ss_pred HHHHHhC
Q psy2895 226 IHDMRNH 232 (293)
Q Consensus 226 l~~l~~l 232 (293)
++.+++.
T Consensus 293 ~~~l~~~ 299 (321)
T TIGR03821 293 MAELLAR 299 (321)
T ss_pred HHHHHHh
Confidence 7777663
No 491
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=69.80 E-value=98 Score=28.98 Aligned_cols=90 Identities=13% Similarity=0.148 Sum_probs=48.5
Q ss_pred HHHHHHHhhCCCc--EEEEEcCCCcCcHHHHHHHHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCc
Q psy2895 128 SCIKHIRKLSTKI--KIEILIPDFRNQINHVLKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNI 205 (293)
Q Consensus 128 ~ll~~i~~~~~~~--~i~~~~~~~~~~~~e~l~~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi 205 (293)
++++.+++.+++. -+.+.+.+... -.++.+.++|++.+.+..++ +.+...++++.+++. |+
T Consensus 215 ~iVk~Lr~~~~~~~I~~DLK~~Di~~---~vv~~~a~aGAD~vTVH~ea------------~~~ti~~ai~~akk~--Gi 277 (391)
T PRK13307 215 EVISKIREVRPDAFIVADLKTLDTGN---LEARMAADATADAVVISGLA------------PISTIEKAIHEAQKT--GI 277 (391)
T ss_pred HHHHHHHHhCCCCeEEEEecccChhh---HHHHHHHhcCCCEEEEeccC------------CHHHHHHHHHHHHHc--CC
Confidence 5566666665442 22232212111 12566677788777765443 233355677788888 87
Q ss_pred eeeEeEEeecCCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 206 LTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 206 ~~~~~~ivG~gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
.+..+++ + -+|..+..+-+ ..+++.+-++
T Consensus 278 kvgVD~l-n-p~tp~e~i~~l----~~~vD~Vllh 306 (391)
T PRK13307 278 YSILDML-N-VEDPVKLLESL----KVKPDVVELH 306 (391)
T ss_pred EEEEEEc-C-CCCHHHHHHHh----hCCCCEEEEc
Confidence 6544432 2 24554443333 4678887776
No 492
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=69.76 E-value=38 Score=30.76 Aligned_cols=87 Identities=10% Similarity=0.162 Sum_probs=52.2
Q ss_pred HHHHHHHHHcCCCeeeeccc-c--chHHHhh-cC-C----CCCH----HHHHHHHHHHHHhC-CCceeeEeEEee----c
Q psy2895 154 NHVLKIFKQALPDVLNHNIE-T--VPRLYKK-VR-P----GSDY----KHSLNLLKNFKKLY-PNILTKSGIMVG----L 215 (293)
Q Consensus 154 ~e~l~~l~~aG~~~i~~~le-s--s~~~~~~-i~-~----~~~~----e~~l~~i~~~~~~~-pgi~~~~~~ivG----~ 215 (293)
.+.+++.+++|+|.|.++.- + ....+.- .+ | +.+. +-.+++++.+++.. |++.+...+=.. -
T Consensus 157 ~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~ 236 (336)
T cd02932 157 VAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEG 236 (336)
T ss_pred HHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCC
Confidence 34556677799999877531 1 0122111 11 0 2233 34567777777775 355554443210 1
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEee
Q psy2895 216 GENDEEILTVIHDMRNHNIDILTIG 240 (293)
Q Consensus 216 gEt~ed~~~~l~~l~~l~~~~i~i~ 240 (293)
|.+.++..+.++.+.+.+++++.++
T Consensus 237 g~~~~e~~~ia~~Le~~gvd~iev~ 261 (336)
T cd02932 237 GWDLEDSVELAKALKELGVDLIDVS 261 (336)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 5678899999999999999999874
No 493
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=69.58 E-value=14 Score=33.22 Aligned_cols=57 Identities=16% Similarity=0.134 Sum_probs=40.2
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCC-------CChhHHHHHHHHHHhhCCCcEEE
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHD-------GGSSHFVSCIKHIRKLSTKIKIE 143 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~-------~~~~~~~~ll~~i~~~~~~~~i~ 143 (293)
.++.+.+.++++++.+.|++.|.|.|.-++...+ .+-.-+...++.||+.+|++.|-
T Consensus 53 r~sid~l~~~v~~~~~~GI~~v~lFgvi~~~~Kd~~gs~a~~~~g~v~~air~iK~~~pdl~vi 116 (324)
T PF00490_consen 53 RYSIDSLVKEVEEAVDLGIRAVILFGVIDPSKKDEEGSEAYNPDGLVQRAIRAIKKAFPDLLVI 116 (324)
T ss_dssp EEEHHHHHHHHHHHHHTT--EEEEEEE-SCSC-BSS-GGGGSTTSHHHHHHHHHHHHSTTSEEE
T ss_pred eeCHHHHHHHHHHHHHCCCCEEEEEeeCCcccCCcchhcccCCCChHHHHHHHHHHhCCCcEEE
Confidence 3689999999999999999999988874332211 01234788999999999986543
No 494
>PRK01362 putative translaldolase; Provisional
Probab=69.53 E-value=70 Score=27.20 Aligned_cols=84 Identities=15% Similarity=0.082 Sum_probs=46.5
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCCe
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDV 167 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~ 167 (293)
.|.++....+ ..|+..|-.--|...+....+...+.++.+.+++...+. ++...++.+ .+.+-.+..+|++.
T Consensus 110 fs~~Qa~~Aa----~aGa~yispyvgRi~d~g~dg~~~i~~~~~~~~~~~~~t--kilaAS~r~--~~~v~~~~~~G~d~ 181 (214)
T PRK01362 110 FSANQALLAA----KAGATYVSPFVGRLDDIGTDGMELIEDIREIYDNYGFDT--EIIAASVRH--PMHVLEAALAGADI 181 (214)
T ss_pred cCHHHHHHHH----hcCCcEEEeecchHhhcCCCHHHHHHHHHHHHHHcCCCc--EEEEeecCC--HHHHHHHHHcCCCE
Confidence 4555555333 357777654444333332233556666666666554333 443323444 45555555789999
Q ss_pred eeeccccchHHHhhcC
Q psy2895 168 LNHNIETVPRLYKKVR 183 (293)
Q Consensus 168 i~~~less~~~~~~i~ 183 (293)
+.++ +++++++.
T Consensus 182 iTi~----~~vl~~l~ 193 (214)
T PRK01362 182 ATIP----YKVIKQLF 193 (214)
T ss_pred EecC----HHHHHHHH
Confidence 8887 46666655
No 495
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=69.41 E-value=34 Score=33.06 Aligned_cols=82 Identities=12% Similarity=0.065 Sum_probs=52.0
Q ss_pred CChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCC---cEEEEEc-CCCcCcHHHHHHHHHHc
Q psy2895 88 LDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTK---IKIEILI-PDFRNQINHVLKIFKQA 163 (293)
Q Consensus 88 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~---~~i~~~~-~~~~~~~~e~l~~l~~a 163 (293)
-+++.+.+.++.+.+.|+..|.|.--.. ...+..+.++++.+++..|. +.+.+.. +++.--+.-.+..+ ++
T Consensus 143 ~d~~~l~~~~~~~~~~Ga~~i~l~DTvG----~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANalaAv-~a 217 (494)
T TIGR00973 143 TEIPFLARIVEAAINAGATTINIPDTVG----YALPAEYGNLIKGLRENVPNIDKAILSVHCHNDLGLAVANSLAAV-QN 217 (494)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCC----CCCHHHHHHHHHHHHHhhccccCceEEEEeCCCCChHHHHHHHHH-Hh
Confidence 4678888888888888998877732111 12246788888888877653 3355533 33221114466666 48
Q ss_pred CCCeeeecccc
Q psy2895 164 LPDVLNHNIET 174 (293)
Q Consensus 164 G~~~i~~~les 174 (293)
|++.+...+.+
T Consensus 218 Ga~~vd~tv~G 228 (494)
T TIGR00973 218 GARQVECTING 228 (494)
T ss_pred CCCEEEEEeec
Confidence 99998765544
No 496
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=69.32 E-value=62 Score=30.22 Aligned_cols=56 Identities=20% Similarity=0.422 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCceeeEeEEeec-C-CCHHHHHHHHHHHHhCCCCEEEeecCCCC
Q psy2895 185 GSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-G-ENDEEILTVIHDMRNHNIDILTIGQYLMP 245 (293)
Q Consensus 185 ~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~-g-Et~ed~~~~l~~l~~l~~~~i~i~~~~~p 245 (293)
.+..+.+++-++.+++.+|..++ |+-+ | .+.+++.+.++.+.+.|+|.+-++ +.-|
T Consensus 94 ~~g~~~~l~~i~~~k~~~~~~pv----IaSi~~~~s~~~~~~~a~~~e~~GaD~iELN-iSCP 151 (385)
T PLN02495 94 DRPFETMLAEFKQLKEEYPDRIL----IASIMEEYNKDAWEEIIERVEETGVDALEIN-FSCP 151 (385)
T ss_pred ccCHHHHHHHHHHHHhhCCCCcE----EEEccCCCCHHHHHHHHHHHHhcCCCEEEEE-CCCC
Confidence 44688899888888776555543 4444 4 799999999999999999998887 6544
No 497
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=69.28 E-value=32 Score=26.99 Aligned_cols=71 Identities=10% Similarity=0.030 Sum_probs=46.3
Q ss_pred HHHHHHHHHcCCCeeeeccccchHHHhhcCCCCCHHHHHHHHHHHHHhCCCceeeEeEEeec--CCCHHHHHHHHHHHHh
Q psy2895 154 NHVLKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL--GENDEEILTVIHDMRN 231 (293)
Q Consensus 154 ~e~l~~l~~aG~~~i~~~less~~~~~~i~~~~~~e~~l~~i~~~~~~~pgi~~~~~~ivG~--gEt~ed~~~~l~~l~~ 231 (293)
++.++...+.+++.+.++.-. +++.....+.++.+++. |.. ...+++|= ....++..+..+.+++
T Consensus 44 e~i~~~a~~~~~d~V~lS~~~----------~~~~~~~~~~~~~L~~~--~~~-~~~i~vGG~~~~~~~~~~~~~~~l~~ 110 (137)
T PRK02261 44 EEFIDAAIETDADAILVSSLY----------GHGEIDCRGLREKCIEA--GLG-DILLYVGGNLVVGKHDFEEVEKKFKE 110 (137)
T ss_pred HHHHHHHHHcCCCEEEEcCcc----------ccCHHHHHHHHHHHHhc--CCC-CCeEEEECCCCCCccChHHHHHHHHH
Confidence 677788888888888876311 23556667777888887 553 13455553 1234556667778889
Q ss_pred CCCCEE
Q psy2895 232 HNIDIL 237 (293)
Q Consensus 232 l~~~~i 237 (293)
+|++.+
T Consensus 111 ~G~~~v 116 (137)
T PRK02261 111 MGFDRV 116 (137)
T ss_pred cCCCEE
Confidence 998865
No 498
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=69.27 E-value=57 Score=29.97 Aligned_cols=139 Identities=16% Similarity=0.189 Sum_probs=74.5
Q ss_pred CCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCCcEEEEEcCCCcCcHHHHHHHHHHcCCC
Q psy2895 87 PLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPD 166 (293)
Q Consensus 87 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~~~i~~~~~~~~~~~~e~l~~l~~aG~~ 166 (293)
..+.+..++++.++.+.|+.-|-++-.+. . ..+.+.++.+.+++.+-.+.+-.-. -|.- .-.++.+ ++ ++
T Consensus 27 t~Dv~atv~QI~~L~~aGceivRvavp~~---~--~a~al~~I~~~l~~~g~~iPlVADI-HFd~--~lAl~a~-~~-v~ 96 (359)
T PF04551_consen 27 TRDVEATVAQIKRLEEAGCEIVRVAVPDM---E--AAEALKEIKKRLRALGSPIPLVADI-HFDY--RLALEAI-EA-VD 96 (359)
T ss_dssp TT-HHHHHHHHHHHHHCT-SEEEEEE-SH---H--HHHHHHHHHHHHHCTT-SS-EEEEE-STTC--HHHHHHH-HC--S
T ss_pred cccHHHHHHHHHHHHHcCCCEEEEcCCCH---H--HHHHHHHHHHhhccCCCCCCeeeec-CCCH--HHHHHHH-HH-hC
Confidence 46788889999999999999887764331 1 1344555555554443223332211 1222 2234444 45 88
Q ss_pred eeeecccc-chHHHhhcCCCCC-HHHHHHHHHHHHHhCCCceeeEeEEeec-C--------CCH----HHHHHHHHHHHh
Q psy2895 167 VLNHNIET-VPRLYKKVRPGSD-YKHSLNLLKNFKKLYPNILTKSGIMVGL-G--------END----EEILTVIHDMRN 231 (293)
Q Consensus 167 ~i~~~les-s~~~~~~i~~~~~-~e~~l~~i~~~~~~~pgi~~~~~~ivG~-g--------Et~----ed~~~~l~~l~~ 231 (293)
.+.++.=. .++ |+ ....+ .+.+.+.++.+++. |+++..++=-|- . .|. +...++++.+++
T Consensus 97 kiRINPGNi~~~-~~--~~~g~~~~~~~~vv~~ake~--~ipIRIGvN~GSL~~~~~~ky~~t~~amvesA~~~~~~le~ 171 (359)
T PF04551_consen 97 KIRINPGNIVDE-FQ--EELGSIREKVKEVVEAAKER--GIPIRIGVNSGSLEKDILEKYGPTPEAMVESALEHVRILEE 171 (359)
T ss_dssp EEEE-TTTSS-------SS-SS-HHHHHHHHHHHHHH--T-EEEEEEEGGGS-HHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEECCCccccc-cc--ccccchHHHHHHHHHHHHHC--CCCEEEecccccCcHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 88775422 231 11 12235 77788889999999 998877776664 2 122 234456677888
Q ss_pred CCCCEEEee
Q psy2895 232 HNIDILTIG 240 (293)
Q Consensus 232 l~~~~i~i~ 240 (293)
++++.+-++
T Consensus 172 ~~f~~iviS 180 (359)
T PF04551_consen 172 LGFDDIVIS 180 (359)
T ss_dssp CT-GGEEEE
T ss_pred CCCCcEEEE
Confidence 888765553
No 499
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=69.25 E-value=46 Score=31.08 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhCCCce-eeEeEEe
Q psy2895 189 KHSLNLLKNFKKLYPNIL-TKSGIMV 213 (293)
Q Consensus 189 e~~l~~i~~~~~~~pgi~-~~~~~iv 213 (293)
+.+.+.|+++.++ |++ ++-++|.
T Consensus 83 enyk~~irNla~~--GI~vicYNFMP 106 (394)
T TIGR00695 83 ENYKQTLRNLAQC--GIKTVCYNFMP 106 (394)
T ss_pred HHHHHHHHHHHHc--CCCEEEEEecc
Confidence 3344445555555 553 3344443
No 500
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=68.85 E-value=41 Score=30.28 Aligned_cols=84 Identities=5% Similarity=-0.002 Sum_probs=51.9
Q ss_pred CCCChhHHHHHHHHHHHCCCcEEEEeeecCCCCCCCChhHHHHHHHHHHhhCCC-cEEEEEcCCCc-CcHHHHHHHHHHc
Q psy2895 86 DPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTK-IKIEILIPDFR-NQINHVLKIFKQA 163 (293)
Q Consensus 86 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~~~~ll~~i~~~~~~-~~i~~~~~~~~-~~~~e~l~~l~~a 163 (293)
..++.+.+.+.++.+.+.|++.|++.|.... ....+.+.-.++++.+.+...+ +.+-+.+.... .+..+.++...++
T Consensus 24 g~iD~~~l~~lv~~li~~Gv~Gi~v~GstGE-~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~ 102 (309)
T cd00952 24 DTVDLDETARLVERLIAAGVDGILTMGTFGE-CATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDL 102 (309)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccccc-chhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHh
Confidence 4689999999999999999999888664421 1222356667777766654322 22323222111 1124556666778
Q ss_pred CCCeeee
Q psy2895 164 LPDVLNH 170 (293)
Q Consensus 164 G~~~i~~ 170 (293)
|+|.+-+
T Consensus 103 Gad~vlv 109 (309)
T cd00952 103 GADGTML 109 (309)
T ss_pred CCCEEEE
Confidence 9998765
Done!