RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2895
(293 letters)
>gnl|CDD|235493 PRK05481, PRK05481, lipoyl synthase; Provisional.
Length = 289
Score = 510 bits (1317), Expect = 0.0
Identities = 160/283 (56%), Positives = 215/283 (75%), Gaps = 2/283 (0%)
Query: 10 EILKKPNWIRVKLISNIDNFNKTKNILRANNLVTVCEEASCPNIGECFGRGVATFMIMGS 69
++ +KP+W+RVKL + + + + K +LR L TVCEEASCPNIGEC+ RG ATFMI+G
Sbjct: 3 KVARKPDWLRVKLPTG-EEYTEIKKLLRELGLHTVCEEASCPNIGECWSRGTATFMILGD 61
Query: 70 ICTRRCKFCNISHGRPDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVSC 129
ICTRRC FC+++ GRP PLD +EP+++A + ++ L YVVITSV+RDDL DGG+ HF
Sbjct: 62 ICTRRCPFCDVATGRPLPLDPDEPERVAEAVARMGLKYVVITSVDRDDLPDGGAQHFAET 121
Query: 130 IKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNHNIETVPRLYKKVRPGSDYK 189
I+ IR+L+ IE+LIPDFR +++ +L + PDV NHN+ETVPRLYK+VRPG+DY+
Sbjct: 122 IRAIRELNPGTTIEVLIPDFRGRMDALLTVLDAR-PDVFNHNLETVPRLYKRVRPGADYE 180
Query: 190 HSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIGQYLMPSRLH 249
SL LLK K+L+P I TKSG+MVGLGE DEE+L V+ D+R +DILTIGQYL PSR H
Sbjct: 181 RSLELLKRAKELHPGIPTKSGLMVGLGETDEEVLEVMDDLRAAGVDILTIGQYLQPSRKH 240
Query: 250 LPVHRYLHPKFFEKFKKIAYKLGFKNVLVGSMIRSSYMADKHF 292
LPV RY+ P+ F+++K+IA +LGF +V G ++RSSY AD+
Sbjct: 241 LPVERYVTPEEFDEYKEIALELGFLHVASGPLVRSSYHADEQA 283
>gnl|CDD|223397 COG0320, LipA, Lipoate synthase [Coenzyme metabolism].
Length = 306
Score = 465 bits (1200), Expect = e-167
Identities = 159/287 (55%), Positives = 215/287 (74%), Gaps = 2/287 (0%)
Query: 6 DKNIEILKKPNWIRVKLISNIDNFNKTKNILRANNLVTVCEEASCPNIGECFGRGVATFM 65
N E+L+KP W++VK + + + K ILR N L TVCEEASCPNIGEC+ RG ATFM
Sbjct: 16 RPNEELLRKPEWLKVKAPTG-SRYQEIKEILRKNGLHTVCEEASCPNIGECWSRGTATFM 74
Query: 66 IMGSICTRRCKFCNISHGRPDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSH 125
I+G ICTRRC+FC++ GRP+PLD +EP+++A + + L YVVITSV+RDDL DGG+ H
Sbjct: 75 ILGDICTRRCRFCDVKTGRPNPLDPDEPERVAEAVKDMGLKYVVITSVDRDDLPDGGAQH 134
Query: 126 FVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNHNIETVPRLYKKVRPG 185
F CI+ IR+L+ + IE+L PDFR + L+I A PDV NHN+ETVPRLY +VRPG
Sbjct: 135 FAECIRAIRELNPQTTIEVLTPDFRGNDDA-LEIVADAGPDVFNHNVETVPRLYPRVRPG 193
Query: 186 SDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIGQYLMP 245
+ Y+ SL+LL+ K+L P+I TKSG+MVGLGE DEE++ V+ D+R+ +DILTIGQYL P
Sbjct: 194 ATYERSLSLLERAKELGPDIPTKSGLMVGLGETDEEVIEVMDDLRSAGVDILTIGQYLQP 253
Query: 246 SRLHLPVHRYLHPKFFEKFKKIAYKLGFKNVLVGSMIRSSYMADKHF 292
SR HLPV RY+ P+ F++ +++A ++GF +V G ++RSSY AD+ F
Sbjct: 254 SRKHLPVQRYVTPEEFDELEEVAEEMGFLHVASGPLVRSSYHADEQF 300
>gnl|CDD|237261 PRK12928, PRK12928, lipoyl synthase; Provisional.
Length = 290
Score = 459 bits (1184), Expect = e-165
Identities = 141/286 (49%), Positives = 185/286 (64%), Gaps = 1/286 (0%)
Query: 5 KDKNIEILKKPNWIRVKLISNIDNFNKTKNILRANNLVTVCEEASCPNIGECFGRGVATF 64
K I + + P W+R I + +++ L T+CEEA CPN GEC+ +G ATF
Sbjct: 5 KSARIPVERLPEWLRAP-IGKASELETVQRLVKQRRLHTICEEARCPNRGECYAQGTATF 63
Query: 65 MIMGSICTRRCKFCNISHGRPDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSS 124
+IMGSICTRRC FC + GRP PLD +EP+++A + L L YVV+TSV RDDL DGG++
Sbjct: 64 LIMGSICTRRCAFCQVDKGRPMPLDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAA 123
Query: 125 HFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNHNIETVPRLYKKVRP 184
HFV+ I IR + IE+L PDF L A PDV NHN+ETVPRL K VR
Sbjct: 124 HFVATIAAIRARNPGTGIEVLTPDFWGGQRERLATVLAAKPDVFNHNLETVPRLQKAVRR 183
Query: 185 GSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIGQYLM 244
G+DY+ SL+LL K+L P+I TKSG+M+GLGE ++E++ + D+R D LTIGQYL
Sbjct: 184 GADYQRSLDLLARAKELAPDIPTKSGLMLGLGETEDEVIETLRDLRAVGCDRLTIGQYLR 243
Query: 245 PSRLHLPVHRYLHPKFFEKFKKIAYKLGFKNVLVGSMIRSSYMADK 290
PS HLPV RY P+ FE +IA +LGF +V G ++RSSY A +
Sbjct: 244 PSLAHLPVQRYWTPEEFEALGQIARELGFSHVRSGPLVRSSYHAGE 289
>gnl|CDD|233002 TIGR00510, lipA, lipoate synthase. This enzyme is an iron-sulfur
protein. It is localized to mitochondria in yeast and
Arabidopsis. It generates lipoic acid, a thiol
antioxidant that is linked to a specific Lys as
prosthetic group for the pyruvate and
alpha-ketoglutarate dehydrogenase complexes and the
glycine-cleavage system. The family shows strong
sequence conservation [Biosynthesis of cofactors,
prosthetic groups, and carriers, Lipoate].
Length = 302
Score = 368 bits (945), Expect = e-128
Identities = 150/284 (52%), Positives = 195/284 (68%), Gaps = 3/284 (1%)
Query: 10 EILKKPNWIRVKLISNIDNFNKTKNILRANNLVTVCEEASCPNIGECFGRGVATFMIMGS 69
+L+KP W+++KL + KN ++ L TVCEEASCPN+ EC+ G ATFMI+G
Sbjct: 13 ILLRKPEWLKIKLPLGT-VIAQIKNTMKNKGLHTVCEEASCPNLTECWNHGTATFMILGD 71
Query: 70 ICTRRCKFCNISHGR-PDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFVS 128
ICTRRC FC+++HGR P P D EEP K+A TI + L YVVITSV+RDDL DGG+SH
Sbjct: 72 ICTRRCPFCDVAHGRNPLPPDPEEPAKLAETIKDMGLKYVVITSVDRDDLEDGGASHLAE 131
Query: 129 CIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNHNIETVPRLYKKVRPGSDY 188
CI+ IR+ IKIE L+PDFR I L I A PDV NHN+ETV RL VRPG+ Y
Sbjct: 132 CIEAIREKLPNIKIETLVPDFRGNIA-ALDILLDAPPDVYNHNLETVERLTPFVRPGATY 190
Query: 189 KHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIGQYLMPSRL 248
+ SL LL+ K+ PN+ TKSGIMVGLGE +EEI + D+R+H + ++T+GQYL PSR
Sbjct: 191 RWSLKLLERAKEYLPNLPTKSGIMVGLGETNEEIKQTLKDLRDHGVTMVTLGQYLRPSRR 250
Query: 249 HLPVHRYLHPKFFEKFKKIAYKLGFKNVLVGSMIRSSYMADKHF 292
HLPV RY+ P+ F+ ++ +A ++GF + G +RSSY AD F
Sbjct: 251 HLPVKRYVSPEEFDYYRSVALEMGFLHAACGPFVRSSYHADSLF 294
>gnl|CDD|215236 PLN02428, PLN02428, lipoic acid synthase.
Length = 349
Score = 313 bits (804), Expect = e-106
Identities = 130/296 (43%), Positives = 186/296 (62%), Gaps = 12/296 (4%)
Query: 4 TKDKNIEILKKPNWIRVKLISNIDNFNKTKNILRANNLVTVCEEASCPNIGECFGRG--- 60
+DK L KP W+R + + + + K LR L TVCEEA CPNIGEC+ G
Sbjct: 44 GRDKP---LPKPKWLRQR-APGGEKYTEIKEKLRELKLNTVCEEAQCPNIGECWNGGGTG 99
Query: 61 --VATFMIMGSICTRRCKFCNISHGR-PDPLDIEEPKKIAYTINKLKLNYVVITSVNRDD 117
AT MI+G CTR C+FC + R P P D +EP+ +A I ++YVV+TSV+RDD
Sbjct: 100 TATATIMILGDTCTRGCRFCAVKTSRTPPPPDPDEPENVAEAIASWGVDYVVLTSVDRDD 159
Query: 118 LHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNHNIETVPR 177
L DGGS HF ++ +++L +I +E L+PDFR + V + L DV HNIETV R
Sbjct: 160 LPDGGSGHFAETVRRLKQLKPEILVEALVPDFRGDLGAVETVATSGL-DVFAHNIETVER 218
Query: 178 LYKKVR-PGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDI 236
L + VR P + YK SL++LK+ K+ P +LTK+ IM+GLGE DEE++ + D+R +D+
Sbjct: 219 LQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGLGETDEEVVQTMEDLRAAGVDV 278
Query: 237 LTIGQYLMPSRLHLPVHRYLHPKFFEKFKKIAYKLGFKNVLVGSMIRSSYMADKHF 292
+T GQYL P++ HLPV Y+ P+ FE +++ ++GF+ V G ++RSSY A + F
Sbjct: 279 VTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLVRSSYKAGEFF 334
>gnl|CDD|240408 PTZ00413, PTZ00413, lipoate synthase; Provisional.
Length = 398
Score = 297 bits (761), Expect = 2e-99
Identities = 118/292 (40%), Positives = 179/292 (61%), Gaps = 13/292 (4%)
Query: 13 KKPNWIRVKL---ISNIDNFNKTKNILRANNLVTVCEEASCPNIGECFGRG------VAT 63
P W +VK+ S FN+ + +R L TVCEEA CPNIGEC+G G AT
Sbjct: 92 PLPPWFKVKVPKGASRRPRFNRIRRSMREKKLHTVCEEAKCPNIGECWGGGDEEGTATAT 151
Query: 64 FMIMGSICTRRCKFCNI-SHGRPDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGG 122
M+MG CTR C+FC++ + +P PLD EP+K+A + ++ ++Y+V+T V+RDDL DGG
Sbjct: 152 IMVMGDHCTRGCRFCSVKTSRKPPPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGG 211
Query: 123 SSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNHNIETVPRLYKKV 182
+SH C++ I++ + ++ +E L+ DF + V K+ L V HNIE V R+ V
Sbjct: 212 ASHVARCVELIKESNPELLLEALVGDFHGDLKSVEKLANSPL-SVYAHNIECVERITPYV 270
Query: 183 RPG-SDYKHSLNLLKNFKKLY-PNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIG 240
R + Y+ SL +L++ K+ +LTKS IM+GLGE +EE+ + D+R + +T+G
Sbjct: 271 RDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGETEEEVRQTLRDLRTAGVSAVTLG 330
Query: 241 QYLMPSRLHLPVHRYLHPKFFEKFKKIAYKLGFKNVLVGSMIRSSYMADKHF 292
QYL P++ L V RY HPK FE +++ A K+GF G ++RSSY A +++
Sbjct: 331 QYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLYCASGPLVRSSYRAGEYY 382
>gnl|CDD|217866 pfam04055, Radical_SAM, Radical SAM superfamily. Radical SAM
proteins catalyze diverse reactions, including unusual
methylations, isomerisation, sulphur insertion, ring
formation, anaerobic oxidation and protein radical
formation.
Length = 165
Score = 77.6 bits (191), Expect = 2e-17
Identities = 32/171 (18%), Positives = 66/171 (38%), Gaps = 12/171 (7%)
Query: 65 MIMGSICTRRCKFCNISH----GRPDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHD 120
+I+ C RC +C G+ L EE + A + +L + V++T L D
Sbjct: 1 IIVTRGCNLRCTYCAFPSIRARGKGRELSPEEILEEAKELARLGVEVVILTGGEPLLLPD 60
Query: 121 GGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNHNIETV-PRLY 179
+ I+I + +L+ K+A D ++ ++++ +
Sbjct: 61 LVELLE---RLLKLREGEGIRITLETNGTLLDE-ELLEELKEAGLDRVSISLQSGDDEVL 116
Query: 180 KKVRPGSDYKHSLNLLKNFKKL-YPNILTKSGIMVGLGENDEEILTVIHDM 229
K + G ++ L L+ ++ P I+ GENDE++ + +
Sbjct: 117 KIINRGHTFEEVLEALELLREAGIPV--VVDNIVGLPGENDEDLEETLELL 165
>gnl|CDD|214792 smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM.
This superfamily contains MoaA, NifB, PqqE,
coproporphyrinogen III oxidase, biotin synthase and MiaB
families, and includes a representative in the
eukaryotic elongator subunit, Elp-3. Some members of the
family are methyltransferases.
Length = 216
Score = 72.8 bits (179), Expect = 2e-15
Identities = 35/194 (18%), Positives = 72/194 (37%), Gaps = 17/194 (8%)
Query: 61 VATFMIMGSICTRRCKFCNISHGRPDPLD---------IEEPKKIAYTINKLKLNYVVIT 111
I+ C RRC FC+ R IE + + + I
Sbjct: 1 PLALYIITRGCPRRCTFCSFPSLRGKLRSRYLEALVREIELLAEKGEKEGLVGTVF--IG 58
Query: 112 SVNRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILI-PDFRNQINHVLKIFKQALPDVLNH 170
L + I+ I L+ ++I I PD + +L+ K+A + ++
Sbjct: 59 GGTPTLLSPEQLEELLEAIREILGLAKDVEITIETRPDTLTE--ELLEALKEAGVNRVSL 116
Query: 171 NIETV-PRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIHD 228
+++ + K + G + L ++ ++ P I + ++VGL GE +E+ +
Sbjct: 117 GVQSGDDEVLKAINRGHTVEDVLEAVELLREAGP-IKVSTDLIVGLPGETEEDFEETLKL 175
Query: 229 MRNHNIDILTIGQY 242
++ D ++I
Sbjct: 176 LKELGPDRVSIFPL 189
>gnl|CDD|223576 COG0502, BioB, Biotin synthase and related enzymes [Coenzyme
metabolism].
Length = 335
Score = 56.9 bits (138), Expect = 2e-09
Identities = 39/190 (20%), Positives = 68/190 (35%), Gaps = 41/190 (21%)
Query: 71 CTRRCKFCNISHGRPDPLDIE---EPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHFV 127
C C +C+ S + E ++I K K G++ F
Sbjct: 61 CPEDCAYCSQSARYKTGVKARKLMEVEEILEAAKKAK---------------AAGATRFC 105
Query: 128 SC---------IKHIRKLSTKIKIEILIP-------DFRNQINHVLKIFKQALPDVLNHN 171
++ + + +K E+ + Q + A D NHN
Sbjct: 106 MGAAGRGPGRDMEEVVEAIKAVKEELGLEVCASLGMLTEEQ----AEKLADAGVDRYNHN 161
Query: 172 IETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRN 231
+ET P Y+ + Y+ LN L+N ++ I SG +VGLGE E+ ++ ++ N
Sbjct: 162 LETSPEFYENIITTRTYEDRLNTLENVREA--GIEVCSGGIVGLGETVEDRAELLLELAN 219
Query: 232 -HNIDILTIG 240
D + I
Sbjct: 220 LPTPDSVPIN 229
>gnl|CDD|180835 PRK07094, PRK07094, biotin synthase; Provisional.
Length = 323
Score = 44.4 bits (106), Expect = 3e-05
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 10/92 (10%)
Query: 157 LKIFKQALPD--VLNHNIETV-PRLYKKVRPGSDYKHSLNLLKNFKKL-YPNILTKSGIM 212
K +K+A D +L H ET LY K+ PG +++ + LK+ K+L Y SG M
Sbjct: 132 YKAWKEAGADRYLLRH--ETADKELYAKLHPGMSFENRIACLKDLKELGYE---VGSGFM 186
Query: 213 VGL-GENDEEILTVIHDMRNHNIDILTIGQYL 243
VGL G+ E++ I ++ ++D++ IG ++
Sbjct: 187 VGLPGQTLEDLADDILFLKELDLDMIGIGPFI 218
>gnl|CDD|235755 PRK06256, PRK06256, biotin synthase; Validated.
Length = 336
Score = 42.9 bits (102), Expect = 9e-05
Identities = 41/195 (21%), Positives = 77/195 (39%), Gaps = 26/195 (13%)
Query: 55 ECFGRGVATFMIMGS---ICTRRCKFCNISHGRPDP------LDIEEP-KKIAYTINKLK 104
G+ V I+ + +C C +C+ S G P LDIEE + I +
Sbjct: 49 HFCGKKVKLNTIINAKSGLCPEDCGYCSQSAGSSAPVYRYAWLDIEELIEAAKEAIEEGA 108
Query: 105 LNYVVITSVNRDDLHDGGSSHFVSCIKHIRKLSTKIKI----EILIPDFRNQINHVLKIF 160
+ ++ S V +K I++ T ++I +L + ++
Sbjct: 109 GTFCIVASGRGPS--GKEVDQVVEAVKAIKE-ETDLEICACLGLLTEE------QAERL- 158
Query: 161 KQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDE 220
K+A D NHN+ET + V Y+ ++ + K I SG ++G+GE+ E
Sbjct: 159 KEAGVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVKAA--GIEPCSGGIIGMGESLE 216
Query: 221 EILTVIHDMRNHNID 235
+ + ++ + D
Sbjct: 217 DRVEHAFFLKELDAD 231
>gnl|CDD|188425 TIGR03910, pyrrolys_PylB, pyrrolysine biosynthesis radical SAM
protein. This model describes a radical SAM protein,
PylB, that is part of the three-gene cassette sufficient
for the biosynthesis of pyrrolysine (the twenty-second
amino acid) when expressed heterologously in E. coli.
The pyrrolysine next is ligated to its own tRNA and
incorporated at special UAG codons [Amino acid
biosynthesis, Other].
Length = 347
Score = 42.4 bits (100), Expect = 1e-04
Identities = 40/181 (22%), Positives = 76/181 (41%), Gaps = 17/181 (9%)
Query: 64 FMIMGSICTRRCKFC-------NISHGRPDPLDIEEPKKIAYTINKLKLNYVVITSVNRD 116
F+ + C C FC I R EE K A + ++ + +T + D
Sbjct: 59 FLYFSTFCKNNCAFCYYRKSNHAIRRYR---KTREEIKAAARALADSGVHLIDLT-MGED 114
Query: 117 DLHDGGSSHFVSCIKHIRKLSTKIKIEILI-PDFRNQINHVLKIFKQALPDVLNHNIETV 175
+ F + +R + + + ++I P + N LK K+A + ET
Sbjct: 115 PYYHNDPRGFERLAELVRMVKEETGLPVMISPGVVD--NETLKKLKEAGANWYACYQETH 172
Query: 176 PR-LYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNI 234
R LY K+R G + +N ++ K++ L + GI+ G+G++ E+ + M++ +
Sbjct: 173 DRELYNKLRVGQSFDERMNSKRHAKRI--GYLIEEGILTGVGDDIEDTAISLRGMKSLDA 230
Query: 235 D 235
D
Sbjct: 231 D 231
>gnl|CDD|225314 COG2516, COG2516, Biotin synthase-related enzyme [General function
prediction only].
Length = 339
Score = 40.9 bits (96), Expect = 5e-04
Identities = 42/218 (19%), Positives = 72/218 (33%), Gaps = 41/218 (18%)
Query: 67 MGSICTRRCKFCNISHGRPDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHF 126
C C +C + PKK+ + V L +
Sbjct: 37 YPGGCIADCAYCPQARSS----TANPPKKVLSRVEW----PAVALEEVLKRLFYDLGNFK 88
Query: 127 VSCIKHI-------------RKLSTKIKIEILIPDFRNQINHV--LKIFKQALPDVLNHN 171
CI+ I +L ++ I I + ++ L+ +++ D L
Sbjct: 89 RICIQQIAYPRALNDLKLILERLHIRLGDPITISECITAVSLKEELEEYRKLGADYLGVA 148
Query: 172 IETV-PRLYKKVRPGSDYKHS--------LNLLKNFKKLYPNILTKSGIMVGLGENDEEI 222
+ L++KVR S HS + + F K I ++VGLGE+D++I
Sbjct: 149 EDAANEELFEKVRKTSGSPHSWERYWEFLEKVAEAFGKGRVGI----HLIVGLGESDKDI 204
Query: 223 LTVIHDMRNHNIDILTIGQY-----LMPSRLHLPVHRY 255
+ I +R + M +R PV RY
Sbjct: 205 VETIKRVRKRGGIVSLFAFTPLKGTQMENRKPPPVERY 242
>gnl|CDD|100105 cd01335, Radical_SAM, Radical SAM superfamily. Enzymes of this
family generate radicals by combining a 4Fe-4S cluster
and S-adenosylmethionine (SAM) in close proximity. They
are characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster.
Mechanistically, they share the transfer of a single
electron from the iron-sulfur cluster to SAM, which
leads to its reductive cleavage to methionine and a
5'-deoxyadenosyl radical, which, in turn, abstracts a
hydrogen from the appropriately positioned carbon atom.
Depending on the enzyme, SAM is consumed during this
process or it is restored and reused. Radical SAM
enzymes catalyze steps in metabolism, DNA repair, the
biosynthesis of vitamins and coenzymes, and the
biosynthesis of many antibiotics. Examples are biotin
synthase (BioB), lipoyl synthase (LipA), pyruvate
formate-lyase (PFL), coproporphyrinogen oxidase (HemN),
lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide
reductase (ARR), and MoaA, an enzyme of the
biosynthesis of molybdopterin.
Length = 204
Score = 39.2 bits (91), Expect = 8e-04
Identities = 35/157 (22%), Positives = 63/157 (40%), Gaps = 14/157 (8%)
Query: 71 CTRRCKFCNI--SHGRPD--PLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHF 126
C C FC+ S GR P +IEE I + + V++T + L
Sbjct: 7 CNLNCGFCSNPASKGRGPESPPEIEEILDIVLEAKERGVEVVILTG--GEPLLYP---EL 61
Query: 127 VSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNHNIETVPR--LYKKVRP 184
++ ++K +I I + +LK K+ D + ++++ K
Sbjct: 62 AELLRRLKKELPGFEISIE-TNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKIRGS 120
Query: 185 GSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEE 221
G +K L LK ++ + + ++VGLG+ DEE
Sbjct: 121 GESFKERLEALKELREA--GLGLSTTLLVGLGDEDEE 155
>gnl|CDD|232973 TIGR00433, bioB, biotin synthase. Catalyzes the last step of the
biotin biosynthesis pathway. All members of the seed
alignment are in the immediate gene neighborhood of a
bioA gene [Biosynthesis of cofactors, prosthetic groups,
and carriers, Biotin].
Length = 296
Score = 37.4 bits (88), Expect = 0.006
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 157 LKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLG 216
+ K A D NHN+ET P Y + Y L LK +K + SG ++G+G
Sbjct: 127 AQRLKDAGVDRYNHNLETSPSYYPNICTTHTYDDRLETLKRARKA--GLSVCSGGIIGMG 184
Query: 217 ENDEEILTVIHDMRNHNID 235
E E+ + + + ++D
Sbjct: 185 ETMEDRIELAFALAELDVD 203
>gnl|CDD|215219 PLN02389, PLN02389, biotin synthase.
Length = 379
Score = 36.0 bits (83), Expect = 0.020
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 161 KQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDE 220
K+A NHN++T Y V Y L L+ ++ I SG ++GLGE +E
Sbjct: 185 KEAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVRE--AGISVCSGGIIGLGEAEE 242
Query: 221 EILTVIH 227
+ + ++H
Sbjct: 243 DRVGLLH 249
>gnl|CDD|233279 TIGR01125, TIGR01125, ribosomal protein S12 methylthiotransferase
RimO. Members of this protein are the
methylthiotransferase RimO, which modifies a conserved
Asp residue in ribosomal protein S12. This clade of
radical SAM family proteins is closely related to the
tRNA modification bifunctional enzyme MiaB (see
TIGR01574), and it catalyzes the same two types of
reactions: a radical-mechanism sulfur insertion, and a
methylation of the inserted sulfur. This clade spans
alpha and gamma proteobacteria, cyano bacteria,
Deinococcus, Porphyromonas, Aquifex, Helicobacter,
Campylobacter, Thermotoga, Chlamydia, Streptococcus
coelicolor and Clostridium, but does not include most
other gram positive bacteria, archaea or eukaryotes
[Protein synthesis, Ribosomal proteins: synthesis and
modification].
Length = 430
Score = 35.5 bits (82), Expect = 0.026
Identities = 40/189 (21%), Positives = 75/189 (39%), Gaps = 31/189 (16%)
Query: 71 CTRRCKFCNIS--HGRPDPLDIEEPKKIAYT-INKLKLNYVVI---TSVNRDDLHDGGSS 124
C RRC FC I G+ IEE K A +++ ++I T+ DL+ S
Sbjct: 145 CNRRCAFCIIPSIRGKLRSRPIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLY--RES 202
Query: 125 HFVSCIKHIRKLSTKIKIEIL----------IPDFRNQINHVLKIFKQALPDV-LNHNIE 173
V ++ + K+ I + + D + VL D+ L H
Sbjct: 203 KLVDLLEELGKVGGIYWIRMHYLYPDELTDDVIDLMAEGPKVLPYL-----DIPLQH--- 254
Query: 174 TVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDE---EILTVIHDM 229
R+ K +R + L+ ++ ++ P+ + ++ +VG GE +E E+L + +
Sbjct: 255 ASDRILKLMRRPGSGEQQLDFIERLREKCPDAVLRTTFIVGFPGETEEDFQELLDFVEEG 314
Query: 230 RNHNIDILT 238
+ + T
Sbjct: 315 QFDRLGAFT 323
>gnl|CDD|185063 PRK15108, PRK15108, biotin synthase; Provisional.
Length = 345
Score = 32.9 bits (75), Expect = 0.17
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 166 DVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGE 217
D NHN++T P Y + Y+ L+ L+ + I SG +VGLGE
Sbjct: 148 DYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRD--AGIKVCSGGIVGLGE 197
>gnl|CDD|223963 COG1032, COG1032, Fe-S oxidoreductase [Energy production and
conversion].
Length = 490
Score = 32.6 bits (74), Expect = 0.24
Identities = 40/222 (18%), Positives = 64/222 (28%), Gaps = 43/222 (19%)
Query: 71 CTRRCKFCNISH----GRPDPLDIEEPKKIAYTINKLKLNYVVITSVNRDDLHDGGSSHF 126
C R C+FC+I+ R P + E +I I + V DD+ GS
Sbjct: 208 CPRGCRFCSITKHFKYRRRRPERVVE--EIKELIEEGGKRVVFFV----DDIFLYGSPAL 261
Query: 127 VSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLN----------HNIETV- 175
+ +L + IE + V D + + V
Sbjct: 262 N--DEKRFELLSLELIERGLRKGCR----VHISAPSLRADTVTDEELLKLLREAGLRRVY 315
Query: 176 -------PRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGL-GENDEEILTVIH 227
L KK+ G + L K + + K +VGL GE +E++ I
Sbjct: 316 IGIESGSEELLKKINKGITTEEVLEEAVKIAKEH-GLRVKLYFIVGLPGETEEDVKETIE 374
Query: 228 DMR---NHNIDILTIGQYLMPSRLHLPVHRYLHPKFFEKFKK 266
+ + +P LP E
Sbjct: 375 LAKFIKKLGPKLYVSPSPFVP----LPGTPLQEMPKLENELL 412
>gnl|CDD|223609 COG0535, COG0535, Predicted Fe-S oxidoreductases [General function
prediction only].
Length = 347
Score = 32.3 bits (73), Expect = 0.25
Identities = 37/205 (18%), Positives = 73/205 (35%), Gaps = 23/205 (11%)
Query: 71 CTRRCKFC--NISHGRPDPLDIEEPKKIAYTINKLKLNYVVITSVN----RDDLHDGGSS 124
C CK C P L EE ++ + +L VVI + R DL
Sbjct: 29 CNLACKHCYAEAGKKLPGELSTEEDLRVIDELAELGEIPVVIFTGGEPLLRPDL------ 82
Query: 125 HFVSCIKHIRKLSTKIKIEI-LIPDFRNQINHVLKIFKQALPDVLNHNIETV-PRLYKKV 182
++ + K I + L + VL+ K+A D ++ +++ + P + +
Sbjct: 83 -----LEIVEYARKKGGIRVSLSTNGTLLTEEVLEKLKEAGLDYVSISLDGLDPETHDPI 137
Query: 183 RPGSD-YKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIGQ 241
R +K ++ +KN K+ ++ + + + EI + +D L +
Sbjct: 138 RGVKGVFKRAVEAIKNLKEAGILVVINTTVTKINYDELPEIADLA---AELGVDELNVFP 194
Query: 242 YLMPSRLHLPVHRYLHPKFFEKFKK 266
+ R + L P+ E
Sbjct: 195 LIPVGRGEENLELDLTPEEEELLLV 219
>gnl|CDD|224561 COG1647, COG1647, Esterase/lipase [General function prediction
only].
Length = 243
Score = 31.5 bits (72), Expect = 0.34
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 11/75 (14%)
Query: 153 INHVLKIFKQALPDVLNHNIETVPRLYKKVRPGSDYKHSLNLLKNFKKLYPNILT----- 207
I +L+ F+ A + E + + K + KKL +
Sbjct: 127 IEGLLEYFRNA-KKYEGKDQEQIDKEMKSYKDTPM-----TTTAQLKKLIKDARRSLDKI 180
Query: 208 KSGIMVGLGENDEEI 222
S +V G DE +
Sbjct: 181 YSPTLVVQGRQDEMV 195
>gnl|CDD|223988 COG1060, ThiH, Thiamine biosynthesis enzyme ThiH and related
uncharacterized enzymes [Coenzyme metabolism / General
function prediction only].
Length = 370
Score = 30.7 bits (70), Expect = 0.78
Identities = 31/174 (17%), Positives = 63/174 (36%), Gaps = 28/174 (16%)
Query: 70 ICTRRCKFCNISHGRPDP----LDIEEPKKIAYTINKLKLNYVVITS-VNRDDLHDGGSS 124
IC C FC DP L EE + K + V+I + +
Sbjct: 68 ICVNDCTFCAFYRKPGDPKAYTLSPEEILEEVREAVKRGITEVLIVGGEHPEL----SLE 123
Query: 125 HFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVL----NHNIETVP---- 176
++ + I++ + I L +I + + + +VL ++++P
Sbjct: 124 YYEELFRTIKEEFPDLHIHALSA---GEILFLAREGGLSYEEVLKRLKEAGLDSMPGGGA 180
Query: 177 -RLYKKVR-----PGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILT 224
L ++VR P + L + + +L I T + +++G E E+ +
Sbjct: 181 EILSEEVRKIHCPPKKSPEEWLEIHERAHRL--GIPTTATMLLGHVETREDRID 232
>gnl|CDD|172808 PRK14332, PRK14332, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 449
Score = 30.7 bits (69), Expect = 0.82
Identities = 48/238 (20%), Positives = 97/238 (40%), Gaps = 33/238 (13%)
Query: 21 KLISNIDNFNKTKNILRANNLVTVCE-EASCPNIGECFGRGVATFMIMGSICTRRCKFCN 79
+LI I N K+ ++ R + + T E E N G+ F+ + C C FC
Sbjct: 120 ELIQRIRNGEKSISLTRLSKIETYDEIEPRVVN-------GIQAFVTIMRGCNNFCTFCV 172
Query: 80 ISHGRPDPLDIEEPKKIAYTINKLK---LNYVVITSVNRDDLHDGGSSHFVSCIKHIRKL 136
+ + R +PK I I L+ + V + N + + + F I+ +
Sbjct: 173 VPYTRGRERS-RDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQSTD-FAGLIQMLLDE 230
Query: 137 STKIKIEILIPDFRNQINHVLKIFKQALPDVLNHNIETVPRLYKKVRPGS-----DYKHS 191
+T +I P ++ +H+L + + N P ++ ++ G+ + K S
Sbjct: 231 TTIERIRFTSPHPKDFPDHLLSLMAK--------NPRFCPNIHLPLQAGNTRVLEEMKRS 282
Query: 192 ------LNLLKNFKKLYPNILTKSGIMVGLG-ENDEEILTVIHDMRNHNIDILTIGQY 242
L+++K + + P++ + I+VG E +EE + +R D+ + +Y
Sbjct: 283 YSKEEFLDVVKEIRNIVPDVGITTDIIVGFPNETEEEFEDTLAVVREVQFDMAFMFKY 340
>gnl|CDD|226572 COG4087, COG4087, Soluble P-type ATPase [General function
prediction only].
Length = 152
Score = 29.4 bits (66), Expect = 1.3
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 181 KVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDILTIG 240
+V G+D + +++ KK Y + +MVG G ND +R ++ I TI
Sbjct: 72 RVFAGADPEMKAKIIRELKKRYEKV-----VMVGNGANDILA------LREADLGICTIQ 120
Query: 241 QYLMPSRLHLPVH 253
Q +P RL L
Sbjct: 121 QEGVPERLLLTAD 133
>gnl|CDD|222607 pfam14225, MOR2-PAG1_C, Cell morphogenesis C-terminal. This family
is the conserved C-terminal region of proteins that are
involved in cell morphogenesis.
Length = 258
Score = 29.4 bits (67), Expect = 2.1
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 22 LISNIDNFNKTKNILR-ANNLVTVCEEASCPNIGECF 57
L+ ++D+ N+ + A L V E ++
Sbjct: 115 LLHHLDDPNQDPKCVSTAEALAQVAEAQGLSSLARVL 151
>gnl|CDD|132590 TIGR03551, F420_cofH, 7,8-didemethyl-8-hydroxy-5-deazariboflavin
synthase, CofH subunit. This enzyme, together with
CofG, complete the biosynthesis of
7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase,
the chromophore of coenzyme F420. The chromophore is
also used in cyanobacteria DNA photolyases
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 343
Score = 29.2 bits (66), Expect = 2.8
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 69 SICTRRCKFCNISHGRPDP----LDIEEPKKIA 97
++C C FC + D L +EE + A
Sbjct: 47 NVCYGGCGFCAFRKRKGDADAYLLSLEEIAERA 79
>gnl|CDD|235762 PRK06267, PRK06267, hypothetical protein; Provisional.
Length = 350
Score = 28.9 bits (65), Expect = 3.2
Identities = 19/68 (27%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 172 IETV-PRLYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMR 230
+ETV P+L++++ PG +L K L + T I++GLGE +++I +++ +
Sbjct: 135 VETVNPKLHREICPGKPLDKIKEMLLKAKDL--GLKTGITIILGLGETEDDIEKLLNLIE 192
Query: 231 NHNIDILT 238
++D +T
Sbjct: 193 ELDLDRIT 200
>gnl|CDD|203243 pfam05383, La, La domain. This presumed domain is found at the
N-terminus of La RNA-binding proteins as well as other
proteins. The function of this region is uncertain.
Length = 59
Score = 26.0 bits (58), Expect = 5.2
Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 1 MNLTKDKNI--EILKKPNWIRVKLISNIDNFNKTKNILRANNLV 42
NL +DK + ++ K P ++ + I++ F + K + NL+
Sbjct: 12 ENLPRDKFLRKQMDKDPGYVPISTIAS---FKRIKKLTTDVNLI 52
>gnl|CDD|219638 pfam07914, DUF1679, Protein of unknown function (DUF1679). The
region featured in this family is found in a number of
C. elegans proteins, in one case as a repeat. In many of
the family members, this region is associated with the
CHK region described by SMART as being found in ZnF_C4
and HLH domain-containing kinases. In fact, one member
of this family is annotated as being a member of the
nuclear hormone receptor family, and contains regions
typical of such proteins (Interpro:IPR000536,
Interpro:IPR008946, and Interpro:IPR001628).
Length = 413
Score = 28.0 bits (63), Expect = 5.8
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 253 HRYLHPKFFEKFKKIAYKLGFKNVLV 278
H F+K+ ++ LG K VLV
Sbjct: 246 HYGPEILIFKKYTNLSKVLGIKPVLV 271
>gnl|CDD|234032 TIGR02855, spore_yabG, sporulation peptidase YabG. Members of this
family are the protein YabG, demonstrated for Bacillus
subtilis to be an endopeptidase able to release
N-terminal peptides from a number of sporulation
proteins, including CotT, CotF, and SpoIVA. It appears
to be expressed under control of sigma-K [Cellular
processes, Sporulation and germination].
Length = 283
Score = 27.7 bits (62), Expect = 7.4
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
Query: 91 EEPKKIAYTINKLKLNYVVIT-----SVNRDDLHD----GGSSHFVSCIKHIRK 135
E P+K+ I +++ + +VIT S N+ + D S +FV ++ RK
Sbjct: 140 EMPEKVLDLIEEVRPDILVITGHDAYSKNKGNYMDLNAYRHSKYFVETVREARK 193
>gnl|CDD|234048 TIGR02887, spore_ger_x_C, germination protein, Ger(x)C family.
Members of this protein family are restricted to
endospore-forming members of the Firmicutes lineage of
bacteria, including the genera Bacillus, Clostridium,
Thermoanaerobacter, Carboxydothermus, etc. Members are
nearly all predicted lipoproteins and belong to probable
transport operons, some of which have been characterized
as crucial to germination in response to alanine.
Members typically have been gene symbols gerKC, gerAC,
gerYC, etc [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Sporulation and
germination].
Length = 371
Score = 27.6 bits (62), Expect = 7.5
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 11/59 (18%)
Query: 220 EEILTVIHDMRNHNIDILTIGQYLMPSRLHLPVHRYLHPKFFEKFKKIAYKLGFKNVLV 278
+EI +I ++ + ID L +G L +R HPK ++K KK ++ FKNV +
Sbjct: 309 KEIEQLIKKLQKYKIDPLGLGDEL---------YRK-HPKLWKKVKKNWDEI-FKNVDI 356
>gnl|CDD|185549 PTZ00311, PTZ00311, phosphoenolpyruvate carboxykinase; Provisional.
Length = 561
Score = 27.7 bits (62), Expect = 8.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 236 ILTIGQYLMPSRLHLPVH 253
ILT+ YLMP + LP+H
Sbjct: 230 ILTVMMYLMPKQGVLPLH 247
>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity
Protein Kinase, MAP kinase kinase 7. Protein kinases
(PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic
(c) domain. PKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine or
tyrosine residues on protein substrates. The MKK7
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein serine/threonine
kinases, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The mitogen-activated
protein (MAP) kinase signaling pathways are important
mediators of cellular responses to extracellular
signals. The pathways involve a triple kinase core
cascade comprising the MAP kinase (MAPK), which is
phosphorylated and activated by a MAPK kinase (MAPKK or
MKK), which itself is phosphorylated and activated by a
MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a
dual-specificity PK that phosphorylates and activates
its downstream target, c-Jun N-terminal kinase (JNK),
on specific threonine and tyrosine residues. Although
MKK7 is capable of dual phosphorylation, it prefers to
phosphorylate the threonine residue of JNK. Thus,
optimal activation of JNK requires both MKK4 (not
included in this subfamily) and MKK7. MKK7 is primarily
activated by cytokines. MKK7 is essential for liver
formation during embryogenesis. It plays roles in G2/M
cell cycle arrest and cell growth. In addition, it is
involved in the control of programmed cell death, which
is crucial in oncogenesis, cancer chemoresistance, and
antagonism to TNFalpha-induced killing, through its
inhibition by Gadd45beta and the subsequent suppression
of the JNK cascade.
Length = 296
Score = 27.7 bits (62), Expect = 8.2
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 18 IRVKLISNIDNFNKTKNILRANNLVTVCEEASCPNIGECFG 58
+ VK + N + K IL +L V + CP I +C+G
Sbjct: 43 MAVKQMRRTGNKEENKRILM--DLDVVLKSHDCPYIVKCYG 81
>gnl|CDD|188681 cd08726, RGS_RGS22_3, Regulator of G protein signaling domain
RGS_RGS22_3. The RGS (Regulator of G-protein Signaling)
domain found in the RGS22 protein, a member of the
RA/RGS subfamily of the RGS protein family. They are a
diverse group of multifunctional proteins that regulate
cellular signaling events downstream of G-protein
coupled receptors (GPCRs). RGS proteins regulate many
aspects of embryonic development such as glial
differentiation, embryonic axis formation, skeletal and
muscle development, cell migration during early
embryogenesis, as well as apoptosis, cell proliferation,
and modulation of cardiac development. RGS22 contains at
least 3 copies of the RGS domain in vertebrata and
exists in multiple splicing variants. RGS22 is
predominantly expressed in testis and believed to play
an important role in spermatogenesis.
Length = 130
Score = 26.7 bits (59), Expect = 9.2
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 262 EKFKKIAYKLGFKNVLVGSMIRSSYMADKHFF 293
E+F++I + K I++ Y+ K+FF
Sbjct: 34 EQFRRIPHTDNAKRDEKAKEIKNKYLNKKYFF 65
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.141 0.424
Gapped
Lambda K H
0.267 0.0684 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,047,309
Number of extensions: 1464209
Number of successful extensions: 1656
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1623
Number of HSP's successfully gapped: 69
Length of query: 293
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 197
Effective length of database: 6,679,618
Effective search space: 1315884746
Effective search space used: 1315884746
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (26.6 bits)