RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2895
         (293 letters)



>d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId:
           562]}
          Length = 312

 Score = 69.6 bits (169), Expect = 3e-14
 Identities = 30/205 (14%), Positives = 67/205 (32%), Gaps = 14/205 (6%)

Query: 64  FMIMGSICTRRCKFCNIS------HGRPDPLDIEEPKKIAYTINKLKLNYVVITSVNRDD 117
             I    C   CK+C  S            +++E+  + A            + +    +
Sbjct: 43  LSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAA-WKN 101

Query: 118 LHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALPDVLNHNIETVPR 177
            H+    +    ++ ++ +  +                  +    A  D  NHN++T P 
Sbjct: 102 PHERDMPYLEQMVQGVKAMGLEA-----CMTLGTLSESQAQRLANAGLDYYNHNLDTSPE 156

Query: 178 LYKKVRPGSDYKHSLNLLKNFKKLYPNILTKSGIMVGLGENDEEILTVIHDMRNHNIDIL 237
            Y  +     Y+  L+ L+  +         SG +VGLGE  ++   ++  + N      
Sbjct: 157 FYGNIITTRTYQERLDTLEKVRDAGIK--VCSGGIVGLGETVKDRAGLLLQLANLPTPPE 214

Query: 238 TIGQYLMPSRLHLPVHRYLHPKFFE 262
           ++   ++      P+        F+
Sbjct: 215 SVPINMLVKVKGTPLADNDDVDAFD 239


>d1b77a1 d.131.1.2 (A:1-110) gp45 sliding clamp {Bacteriophage RB69
           [TaxId: 12353]}
          Length = 110

 Score = 25.9 bits (57), Expect = 3.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 189 KHSLNLLKNFKKLYPNILTKSG 210
           K ++ +LKNF  +   IL   G
Sbjct: 5   KDTIAILKNFASINSGILLSQG 26


>d1rz4a1 a.4.5.53 (A:132-216) Eukaryotic translation initiation
          factor 3 subunit 12, eIF3k, C-terminal domain {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 85

 Score = 25.0 bits (55), Expect = 3.8
 Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 4/30 (13%)

Query: 10 EILKKPNWIRVK----LISNIDNFNKTKNI 35
            + K  W   +     I + +   K KNI
Sbjct: 41 VWMSKYGWSADESGQIFICSQEESIKPKNI 70


>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex,
           superhelical domain {Lamprey (Ichthyomyzon unicuspis)
           [TaxId: 30308]}
          Length = 336

 Score = 25.6 bits (56), Expect = 7.9
 Identities = 7/52 (13%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 114 NRDDLHDGGSSHFVSCIKHIRKLSTKIKIEILIPDFRNQINHVLKIFKQALP 165
           N+  +H+   + F+     +R +     ++ +      Q ++  +    A+P
Sbjct: 33  NQLSVHEDAPAKFLRLTAFLRNVDAG-VLQSIWHKLHQQKDY-RRWILDAVP 82


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.141    0.424 

Gapped
Lambda     K      H
   0.267   0.0754    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,154,766
Number of extensions: 57258
Number of successful extensions: 200
Number of sequences better than 10.0: 1
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 10
Length of query: 293
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 208
Effective length of database: 1,240,546
Effective search space: 258033568
Effective search space used: 258033568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (23.8 bits)