Query psy2896
Match_columns 467
No_of_seqs 202 out of 1604
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 20:22:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2896.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2896hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09280 F0F1 ATP synthase sub 100.0 1E-128 3E-133 1009.8 51.2 458 1-465 1-462 (463)
2 TIGR01039 atpD ATP synthase, F 100.0 3E-127 6E-132 997.2 50.6 455 2-463 1-459 (461)
3 CHL00060 atpB ATP synthase CF1 100.0 2E-126 4E-131 996.8 51.5 463 3-465 16-486 (494)
4 PRK12597 F0F1 ATP synthase sub 100.0 1E-126 3E-131 998.1 49.8 457 1-464 1-460 (461)
5 TIGR03305 alt_F1F0_F1_bet alte 100.0 3E-125 7E-130 982.6 47.9 447 4-458 1-449 (449)
6 COG1157 FliI Flagellar biosynt 100.0 6E-123 1E-127 938.2 40.2 411 3-438 25-440 (441)
7 COG0055 AtpD F0F1-type ATP syn 100.0 8E-118 2E-122 884.7 38.8 460 1-467 1-467 (468)
8 TIGR03324 alt_F1F0_F1_al alter 100.0 3E-112 7E-117 890.8 45.9 419 3-449 28-453 (497)
9 PRK04196 V-type ATP synthase s 100.0 1E-110 3E-115 879.9 47.0 435 1-462 2-452 (460)
10 TIGR01041 ATP_syn_B_arch ATP s 100.0 2E-110 3E-115 877.1 46.2 433 3-462 2-450 (458)
11 PRK13343 F0F1 ATP synthase sub 100.0 2E-110 3E-115 881.6 45.5 420 3-449 28-453 (502)
12 PRK09281 F0F1 ATP synthase sub 100.0 3E-110 7E-115 883.1 46.0 422 3-450 28-454 (502)
13 PRK06936 type III secretion sy 100.0 2E-110 5E-115 868.9 43.4 411 3-438 24-439 (439)
14 CHL00059 atpA ATP synthase CF1 100.0 7E-110 2E-114 869.9 44.7 421 3-449 7-432 (485)
15 PRK08972 fliI flagellum-specif 100.0 7E-110 2E-114 863.1 43.9 413 3-440 26-443 (444)
16 TIGR00962 atpA proton transloc 100.0 5E-109 1E-113 874.3 44.5 419 3-448 27-451 (501)
17 TIGR01040 V-ATPase_V1_B V-type 100.0 3E-108 6E-113 852.2 46.3 431 3-462 2-459 (466)
18 PRK08927 fliI flagellum-specif 100.0 2E-108 4E-113 855.2 44.4 414 3-439 18-438 (442)
19 PRK02118 V-type ATP synthase s 100.0 3E-107 7E-112 842.8 44.5 417 3-462 5-429 (436)
20 PRK05688 fliI flagellum-specif 100.0 2E-106 3E-111 842.6 44.5 411 3-438 28-447 (451)
21 PRK09099 type III secretion sy 100.0 5E-106 1E-110 839.9 44.1 411 3-438 25-440 (441)
22 PRK07165 F0F1 ATP synthase sub 100.0 6E-106 1E-110 842.9 44.6 416 4-446 3-426 (507)
23 TIGR01043 ATP_syn_A_arch ATP s 100.0 3E-106 5E-111 855.4 40.7 421 3-437 1-523 (578)
24 KOG1350|consensus 100.0 1E-107 3E-112 795.3 27.8 464 2-467 51-517 (521)
25 PRK06820 type III secretion sy 100.0 2E-105 4E-110 834.2 43.9 409 3-437 30-439 (440)
26 TIGR01042 V-ATPase_V1_A V-type 100.0 6E-106 1E-110 848.9 38.9 422 3-438 2-529 (591)
27 TIGR03497 FliI_clade2 flagella 100.0 5E-105 1E-109 829.3 44.4 409 4-437 1-413 (413)
28 PRK04192 V-type ATP synthase s 100.0 2E-105 5E-110 849.1 41.9 425 1-438 2-527 (586)
29 PRK07960 fliI flagellum-specif 100.0 6E-105 1E-109 828.7 43.0 412 2-438 27-454 (455)
30 TIGR03498 FliI_clade3 flagella 100.0 5E-105 1E-109 828.8 42.5 411 4-437 1-418 (418)
31 PRK07594 type III secretion sy 100.0 8E-105 2E-109 828.3 42.6 410 3-438 22-432 (433)
32 PTZ00185 ATPase alpha subunit; 100.0 4E-104 9E-109 823.4 46.3 421 2-449 39-483 (574)
33 TIGR03496 FliI_clade1 flagella 100.0 2E-104 5E-109 824.2 43.0 405 4-433 1-411 (411)
34 PRK08149 ATP synthase SpaL; Va 100.0 3E-104 6E-109 822.8 43.1 410 3-437 7-427 (428)
35 PRK08472 fliI flagellum-specif 100.0 3E-104 6E-109 824.3 42.0 410 3-438 19-434 (434)
36 PRK05922 type III secretion sy 100.0 6E-104 1E-108 820.9 44.2 409 3-438 20-432 (434)
37 PRK07196 fliI flagellum-specif 100.0 4E-102 9E-107 808.0 42.7 411 3-438 18-433 (434)
38 PRK06002 fliI flagellum-specif 100.0 4E-101 1E-105 800.7 42.9 410 3-440 27-444 (450)
39 TIGR02546 III_secr_ATP type II 100.0 5E-101 1E-105 802.9 42.9 411 3-438 6-422 (422)
40 TIGR01026 fliI_yscN ATPase Fli 100.0 6E-100 1E-104 797.0 43.2 411 3-438 24-440 (440)
41 PRK06793 fliI flagellum-specif 100.0 1.1E-97 2E-102 774.6 41.7 408 3-437 22-432 (432)
42 PRK07721 fliI flagellum-specif 100.0 4.1E-97 9E-102 775.1 43.0 412 3-439 19-436 (438)
43 PRK06315 type III secretion sy 100.0 3.5E-97 8E-102 772.6 41.0 412 3-438 24-442 (442)
44 COG0056 AtpA F0F1-type ATP syn 100.0 1.2E-92 2.7E-97 717.8 36.9 423 2-449 27-453 (504)
45 cd01135 V_A-ATPase_B V/A-type 100.0 2.8E-91 6.2E-96 686.5 26.1 270 73-349 1-276 (276)
46 cd01133 F1-ATPase_beta F1 ATP 100.0 9.8E-91 2.1E-95 684.2 28.2 272 73-351 1-273 (274)
47 cd01136 ATPase_flagellum-secre 100.0 5.3E-90 1.2E-94 695.9 31.5 325 73-408 1-326 (326)
48 PRK14698 V-type ATP synthase s 100.0 2.6E-87 5.5E-92 753.5 38.1 262 169-437 681-957 (1017)
49 cd01132 F1_ATPase_alpha F1 ATP 100.0 3.4E-88 7.4E-93 664.8 26.8 269 74-350 2-274 (274)
50 COG1156 NtpB Archaeal/vacuolar 100.0 7.6E-81 1.7E-85 625.3 30.1 433 3-462 7-455 (463)
51 cd01134 V_A-ATPase_A V/A-type 100.0 8.2E-79 1.8E-83 612.3 23.1 243 103-349 120-369 (369)
52 COG1155 NtpA Archaeal/vacuolar 100.0 2.3E-74 4.9E-79 593.0 29.1 422 3-437 2-525 (588)
53 KOG1351|consensus 100.0 2.2E-73 4.8E-78 550.8 26.7 419 1-439 22-464 (489)
54 PRK12608 transcription termina 100.0 3.2E-73 6.9E-78 578.7 26.6 303 57-382 55-361 (380)
55 KOG1352|consensus 100.0 4.9E-74 1.1E-78 571.7 15.6 422 3-438 21-548 (618)
56 PF00006 ATP-synt_ab: ATP synt 100.0 7E-70 1.5E-74 521.8 16.4 211 127-347 1-215 (215)
57 PRK09376 rho transcription ter 100.0 1.7E-65 3.8E-70 522.7 29.0 302 58-382 88-397 (416)
58 PRK12678 transcription termina 100.0 1.4E-65 3E-70 538.9 27.4 295 58-379 330-641 (672)
59 TIGR00767 rho transcription te 100.0 1.5E-60 3.2E-65 488.7 22.8 302 58-380 88-394 (415)
60 cd01128 rho_factor Transcripti 100.0 1.4E-54 3E-59 425.0 22.7 238 129-382 4-244 (249)
61 COG1158 Rho Transcription term 100.0 8.7E-46 1.9E-50 364.7 18.2 288 59-378 92-397 (422)
62 KOG1353|consensus 100.0 3.5E-41 7.7E-46 320.6 13.2 308 2-430 20-334 (340)
63 PF00306 ATP-synt_ab_C: ATP sy 99.3 2.5E-11 5.5E-16 105.4 9.8 96 360-458 1-97 (113)
64 cd01120 RecA-like_NTPases RecA 99.2 7.1E-10 1.5E-14 99.2 17.9 160 144-329 2-165 (165)
65 cd01394 radB RadB. The archaea 98.7 2.6E-07 5.6E-12 88.5 14.7 181 125-331 1-188 (218)
66 PF02874 ATP-synt_ab_N: ATP sy 98.5 2.3E-07 5E-12 73.1 7.1 65 6-71 1-69 (69)
67 PF06745 KaiC: KaiC; InterPro 98.5 7.1E-07 1.5E-11 86.1 10.3 181 125-330 1-186 (226)
68 PRK09361 radB DNA repair and r 98.5 6E-06 1.3E-10 79.6 16.0 54 122-176 2-57 (225)
69 COG0467 RAD55 RecA-superfamily 98.4 4E-06 8.7E-11 82.8 14.7 199 123-344 3-209 (260)
70 TIGR03878 thermo_KaiC_2 KaiC d 98.3 1.2E-05 2.5E-10 79.8 14.9 181 125-331 4-206 (259)
71 PRK09302 circadian clock prote 98.3 1.1E-05 2.3E-10 87.5 14.2 195 121-345 251-450 (509)
72 PRK06067 flagellar accessory p 98.3 7.4E-06 1.6E-10 79.5 11.4 196 122-345 4-203 (234)
73 cd00983 recA RecA is a bacter 98.3 2E-06 4.4E-11 87.8 7.5 111 122-255 33-147 (325)
74 TIGR02012 tigrfam_recA protein 98.2 3.1E-06 6.6E-11 86.4 8.5 111 123-255 34-147 (321)
75 PRK04328 hypothetical protein; 98.2 1.1E-05 2.3E-10 79.6 11.5 67 124-191 4-72 (249)
76 TIGR02655 circ_KaiC circadian 98.2 1.7E-05 3.7E-10 85.5 13.8 193 120-345 240-440 (484)
77 PRK09354 recA recombinase A; P 98.2 4E-06 8.7E-11 86.4 8.4 111 122-255 38-152 (349)
78 cd01393 recA_like RecA is a b 98.1 1.3E-05 2.8E-10 77.0 10.3 44 125-168 1-46 (226)
79 TIGR03877 thermo_KaiC_1 KaiC d 98.1 6.1E-05 1.3E-09 73.5 15.0 66 124-190 2-69 (237)
80 TIGR03881 KaiC_arch_4 KaiC dom 98.1 1.9E-05 4.2E-10 76.2 10.6 195 125-345 2-205 (229)
81 cd01123 Rad51_DMC1_radA Rad51_ 98.1 2E-05 4.2E-10 76.2 10.3 42 125-166 1-44 (235)
82 COG0468 RecA RecA/RadA recombi 98.1 1.2E-05 2.7E-10 80.4 8.9 113 122-257 39-157 (279)
83 PF08423 Rad51: Rad51; InterP 98.1 3.8E-06 8.3E-11 83.2 4.6 121 121-257 16-149 (256)
84 PLN03187 meiotic recombination 98.0 3.1E-05 6.7E-10 79.9 10.9 122 121-256 104-236 (344)
85 TIGR02237 recomb_radB DNA repa 98.0 5.7E-05 1.2E-09 71.8 11.3 166 138-330 9-179 (209)
86 TIGR02236 recomb_radA DNA repa 97.9 5.4E-05 1.2E-09 76.8 10.3 124 122-256 74-207 (310)
87 TIGR02238 recomb_DMC1 meiotic 97.9 6.1E-05 1.3E-09 76.8 10.6 123 120-256 73-206 (313)
88 smart00382 AAA ATPases associa 97.9 2E-05 4.3E-10 67.4 5.9 146 140-329 1-146 (148)
89 PTZ00035 Rad51 protein; Provis 97.9 5.4E-05 1.2E-09 78.0 9.8 49 118-166 93-143 (337)
90 PRK09302 circadian clock prote 97.9 0.00016 3.5E-09 78.4 13.6 70 123-192 11-82 (509)
91 cd01122 GP4d_helicase GP4d_hel 97.9 0.00032 6.9E-09 69.3 14.7 67 122-188 10-77 (271)
92 TIGR00416 sms DNA repair prote 97.9 0.00017 3.8E-09 77.1 13.2 53 123-176 74-128 (454)
93 PRK08533 flagellar accessory p 97.8 0.00073 1.6E-08 65.9 16.2 64 125-189 6-71 (230)
94 TIGR02655 circ_KaiC circadian 97.8 9.5E-05 2E-09 79.8 10.7 68 124-191 2-71 (484)
95 PRK11823 DNA repair protein Ra 97.8 0.00029 6.2E-09 75.4 14.0 46 123-168 60-107 (446)
96 cd01121 Sms Sms (bacterial rad 97.8 0.00032 7E-09 73.2 14.0 47 122-168 61-109 (372)
97 PRK09519 recA DNA recombinatio 97.8 6.5E-05 1.4E-09 84.6 9.1 110 123-254 39-151 (790)
98 PLN03186 DNA repair protein RA 97.8 0.00017 3.7E-09 74.4 11.4 121 122-256 102-233 (342)
99 PRK04301 radA DNA repair and r 97.8 0.00016 3.5E-09 73.7 10.8 122 123-256 82-213 (317)
100 TIGR03880 KaiC_arch_3 KaiC dom 97.7 0.00087 1.9E-08 64.5 14.8 175 128-330 1-179 (224)
101 cd01124 KaiC KaiC is a circadi 97.7 0.00061 1.3E-08 63.1 13.2 161 144-330 2-165 (187)
102 TIGR02239 recomb_RAD51 DNA rep 97.7 0.00031 6.8E-09 71.8 10.9 45 122-166 75-121 (316)
103 PF00154 RecA: recA bacterial 97.5 0.00022 4.9E-09 72.8 7.3 109 122-253 31-143 (322)
104 PF13481 AAA_25: AAA domain; P 97.1 0.0019 4.2E-08 60.1 7.7 68 125-192 14-92 (193)
105 COG2256 MGS1 ATPase related to 96.9 0.0035 7.7E-08 65.3 8.2 96 138-303 45-140 (436)
106 cd00009 AAA The AAA+ (ATPases 96.8 0.016 3.6E-07 49.7 11.2 27 140-166 18-44 (151)
107 PRK05973 replicative DNA helic 96.8 0.0056 1.2E-07 60.1 8.6 100 137-254 60-160 (237)
108 COG1066 Sms Predicted ATP-depe 96.7 0.0027 5.8E-08 66.3 5.6 56 122-180 72-129 (456)
109 PF05729 NACHT: NACHT domain 96.6 0.0053 1.1E-07 55.0 6.4 27 143-169 2-28 (166)
110 cd00544 CobU Adenosylcobinamid 96.5 0.01 2.2E-07 55.2 8.0 89 144-258 2-90 (169)
111 PF05496 RuvB_N: Holliday junc 96.4 0.0049 1.1E-07 60.0 5.4 23 143-165 52-74 (233)
112 KOG2028|consensus 96.4 0.0086 1.9E-07 61.8 7.2 78 143-262 164-243 (554)
113 COG1155 NtpA Archaeal/vacuolar 96.4 0.0088 1.9E-07 64.0 7.5 195 215-410 291-499 (588)
114 COG2874 FlaH Predicted ATPases 96.1 0.13 2.7E-06 49.9 13.2 164 138-330 25-191 (235)
115 COG1124 DppF ABC-type dipeptid 96.0 0.004 8.6E-08 61.0 2.2 29 136-164 28-56 (252)
116 PF13401 AAA_22: AAA domain; P 95.9 0.021 4.5E-07 49.5 6.5 93 140-254 3-100 (131)
117 PF03796 DnaB_C: DnaB-like hel 95.9 0.009 2E-07 58.9 4.6 55 125-180 2-57 (259)
118 PF13173 AAA_14: AAA domain 95.8 0.026 5.6E-07 49.6 6.7 25 141-165 2-26 (128)
119 TIGR00665 DnaB replicative DNA 95.6 0.015 3.3E-07 61.7 5.3 46 123-168 176-222 (434)
120 PF00931 NB-ARC: NB-ARC domain 95.6 0.036 7.7E-07 54.8 7.5 46 139-184 17-63 (287)
121 PF00004 AAA: ATPase family as 95.6 0.025 5.4E-07 48.7 5.6 22 144-165 1-22 (132)
122 PF04665 Pox_A32: Poxvirus A32 95.6 0.043 9.4E-07 54.0 7.8 25 143-167 15-39 (241)
123 PRK10416 signal recognition pa 95.6 0.11 2.3E-06 53.4 10.9 37 139-175 112-148 (318)
124 PF13479 AAA_24: AAA domain 95.5 0.039 8.5E-07 53.0 7.3 22 140-161 2-23 (213)
125 PRK14974 cell division protein 95.5 0.11 2.5E-06 53.6 11.0 30 139-168 138-167 (336)
126 TIGR03600 phage_DnaB phage rep 95.5 0.011 2.5E-07 62.5 3.8 45 123-167 175-220 (421)
127 cd03115 SRP The signal recogni 95.5 0.18 3.9E-06 46.3 11.3 46 143-189 2-47 (173)
128 cd00984 DnaB_C DnaB helicase C 95.5 0.02 4.3E-07 55.4 5.1 49 138-186 10-58 (242)
129 PRK12724 flagellar biosynthesi 95.4 0.062 1.4E-06 57.0 8.8 27 139-165 221-247 (432)
130 cd03222 ABC_RNaseL_inhibitor T 95.4 0.011 2.5E-07 55.4 2.9 35 130-164 14-48 (177)
131 PHA02542 41 41 helicase; Provi 95.4 0.015 3.2E-07 62.7 4.1 54 122-175 169-224 (473)
132 COG1116 TauB ABC-type nitrate/ 95.3 0.01 2.2E-07 58.4 2.5 35 129-163 16-51 (248)
133 PF01583 APS_kinase: Adenylyls 95.3 0.054 1.2E-06 49.9 6.9 89 140-255 1-89 (156)
134 PRK14722 flhF flagellar biosyn 95.3 0.12 2.6E-06 54.1 10.3 55 122-176 117-174 (374)
135 PRK00411 cdc6 cell division co 95.2 0.049 1.1E-06 56.7 7.4 98 139-254 53-151 (394)
136 cd00820 PEPCK_HprK Phosphoenol 95.2 0.012 2.6E-07 50.8 2.3 28 135-162 9-36 (107)
137 COG3638 ABC-type phosphate/pho 95.2 0.018 3.9E-07 56.4 3.6 66 127-192 15-83 (258)
138 PRK08181 transposase; Validate 95.2 0.049 1.1E-06 54.5 6.9 30 139-168 104-133 (269)
139 TIGR01166 cbiO cobalt transpor 95.1 0.013 2.8E-07 54.8 2.4 29 136-164 13-41 (190)
140 PRK05748 replicative DNA helic 95.1 0.027 5.9E-07 60.2 5.1 46 123-168 184-230 (448)
141 PRK08506 replicative DNA helic 95.1 0.021 4.6E-07 61.6 4.1 52 124-175 174-226 (472)
142 PF13207 AAA_17: AAA domain; P 95.0 0.016 3.5E-07 49.7 2.4 23 143-165 1-23 (121)
143 PF01637 Arch_ATPase: Archaeal 95.0 0.011 2.5E-07 55.7 1.6 27 139-165 18-44 (234)
144 COG3842 PotA ABC-type spermidi 95.0 0.021 4.5E-07 59.2 3.5 43 120-163 10-53 (352)
145 PRK13342 recombination factor 94.9 0.084 1.8E-06 55.9 8.1 26 140-165 35-60 (413)
146 TIGR02211 LolD_lipo_ex lipopro 94.9 0.017 3.6E-07 55.3 2.4 29 136-164 26-54 (221)
147 PRK08760 replicative DNA helic 94.9 0.025 5.5E-07 61.1 4.0 53 123-175 210-264 (476)
148 PF13191 AAA_16: AAA ATPase do 94.8 0.16 3.4E-06 46.5 8.8 34 135-168 18-51 (185)
149 TIGR00064 ftsY signal recognit 94.8 0.23 5.1E-06 49.7 10.7 39 138-176 69-107 (272)
150 PRK09165 replicative DNA helic 94.8 0.03 6.4E-07 60.9 4.5 46 123-168 198-244 (497)
151 cd03229 ABC_Class3 This class 94.8 0.018 3.9E-07 53.4 2.5 29 136-164 21-49 (178)
152 cd03224 ABC_TM1139_LivF_branch 94.8 0.017 3.7E-07 55.2 2.3 29 136-164 21-49 (222)
153 TIGR00960 3a0501s02 Type II (G 94.8 0.018 3.9E-07 54.9 2.4 29 136-164 24-52 (216)
154 PRK12377 putative replication 94.7 0.12 2.7E-06 51.1 8.2 28 141-168 101-128 (248)
155 cd03250 ABCC_MRP_domain1 Domai 94.7 0.019 4E-07 54.4 2.3 47 135-181 25-74 (204)
156 cd01125 repA Hexameric Replica 94.7 0.18 3.8E-06 49.2 9.2 27 141-167 1-27 (239)
157 TIGR02928 orc1/cdc6 family rep 94.7 0.063 1.4E-06 55.2 6.4 28 139-166 38-65 (365)
158 TIGR02315 ABC_phnC phosphonate 94.7 0.019 4.1E-07 55.7 2.4 29 136-164 23-51 (243)
159 cd03254 ABCC_Glucan_exporter_l 94.7 0.019 4.2E-07 55.2 2.4 30 136-165 24-53 (229)
160 TIGR03608 L_ocin_972_ABC putat 94.7 0.019 4.2E-07 54.2 2.4 30 135-164 18-47 (206)
161 COG4619 ABC-type uncharacteriz 94.7 0.02 4.4E-07 53.5 2.3 28 136-163 24-51 (223)
162 cd03260 ABC_PstB_phosphate_tra 94.7 0.021 4.5E-07 54.9 2.5 30 136-165 21-50 (227)
163 cd03256 ABC_PhnC_transporter A 94.7 0.02 4.3E-07 55.4 2.4 29 136-164 22-50 (241)
164 cd03258 ABC_MetN_methionine_tr 94.6 0.02 4.4E-07 55.2 2.4 30 136-165 26-55 (233)
165 PRK05541 adenylylsulfate kinas 94.6 0.22 4.7E-06 45.9 9.2 31 137-167 3-33 (176)
166 cd03292 ABC_FtsE_transporter F 94.6 0.021 4.6E-07 54.2 2.5 30 135-164 21-50 (214)
167 cd03269 ABC_putative_ATPase Th 94.6 0.021 4.6E-07 54.2 2.5 30 135-164 20-49 (210)
168 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.6 0.022 4.7E-07 54.4 2.5 34 131-164 19-53 (218)
169 PF00005 ABC_tran: ABC transpo 94.6 0.018 3.9E-07 50.5 1.7 29 136-164 6-34 (137)
170 cd03262 ABC_HisP_GlnQ_permease 94.6 0.022 4.7E-07 54.1 2.5 29 136-164 21-49 (213)
171 cd03225 ABC_cobalt_CbiO_domain 94.6 0.022 4.7E-07 54.1 2.4 29 136-164 22-50 (211)
172 cd03259 ABC_Carb_Solutes_like 94.6 0.022 4.8E-07 54.2 2.4 29 136-164 21-49 (213)
173 cd03226 ABC_cobalt_CbiO_domain 94.6 0.021 4.6E-07 54.0 2.4 29 136-164 21-49 (205)
174 PF03308 ArgK: ArgK protein; 94.6 0.031 6.7E-07 55.5 3.5 45 131-175 18-63 (266)
175 TIGR03499 FlhF flagellar biosy 94.6 0.14 2.9E-06 51.6 8.2 39 138-176 191-231 (282)
176 cd03219 ABC_Mj1267_LivG_branch 94.5 0.02 4.4E-07 55.3 2.2 29 136-164 21-49 (236)
177 COG0563 Adk Adenylate kinase a 94.5 0.068 1.5E-06 50.2 5.6 22 143-164 2-23 (178)
178 COG2255 RuvB Holliday junction 94.5 0.055 1.2E-06 54.4 5.1 23 143-165 54-76 (332)
179 TIGR03015 pepcterm_ATPase puta 94.5 0.19 4.2E-06 49.2 9.1 49 141-192 43-91 (269)
180 PRK14956 DNA polymerase III su 94.5 0.093 2E-06 56.6 7.3 110 141-269 40-150 (484)
181 cd03216 ABC_Carb_Monos_I This 94.5 0.023 5E-07 52.1 2.4 30 136-165 21-50 (163)
182 PRK06526 transposase; Provisio 94.5 0.074 1.6E-06 52.8 6.1 30 139-168 96-125 (254)
183 TIGR00678 holB DNA polymerase 94.5 0.25 5.5E-06 46.0 9.5 26 142-167 15-40 (188)
184 TIGR02881 spore_V_K stage V sp 94.5 0.33 7E-06 48.0 10.7 30 137-166 38-67 (261)
185 cd03218 ABC_YhbG The ABC trans 94.5 0.023 5E-07 54.7 2.4 29 136-164 21-49 (232)
186 cd03235 ABC_Metallic_Cations A 94.5 0.021 4.6E-07 54.3 2.1 29 136-164 20-48 (213)
187 cd03238 ABC_UvrA The excision 94.5 0.023 5E-07 53.2 2.3 27 136-162 16-42 (176)
188 PRK04296 thymidine kinase; Pro 94.5 0.17 3.6E-06 47.8 8.2 35 141-175 2-36 (190)
189 cd03265 ABC_DrrA DrrA is the A 94.5 0.024 5.2E-07 54.3 2.5 32 133-164 18-49 (220)
190 TIGR03410 urea_trans_UrtE urea 94.5 0.023 5E-07 54.7 2.4 31 134-164 19-49 (230)
191 PF00308 Bac_DnaA: Bacterial d 94.5 0.17 3.7E-06 48.9 8.4 32 141-172 34-65 (219)
192 PRK14247 phosphate ABC transpo 94.4 0.024 5.2E-07 55.4 2.4 29 136-164 24-52 (250)
193 TIGR03864 PQQ_ABC_ATP ABC tran 94.4 0.025 5.3E-07 54.9 2.5 29 136-164 22-50 (236)
194 PRK00889 adenylylsulfate kinas 94.4 0.3 6.5E-06 44.9 9.6 29 140-168 3-31 (175)
195 cd03236 ABC_RNaseL_inhibitor_d 94.4 0.026 5.6E-07 55.9 2.6 35 131-165 16-50 (255)
196 KOG1433|consensus 94.4 0.085 1.8E-06 54.2 6.4 48 117-164 85-134 (326)
197 PRK14255 phosphate ABC transpo 94.4 0.025 5.4E-07 55.4 2.4 28 136-163 26-53 (252)
198 PRK13540 cytochrome c biogenes 94.4 0.027 5.8E-07 53.3 2.6 30 135-164 21-50 (200)
199 cd03293 ABC_NrtD_SsuB_transpor 94.4 0.024 5.3E-07 54.2 2.3 29 136-164 25-53 (220)
200 COG1484 DnaC DNA replication p 94.4 0.13 2.9E-06 50.9 7.6 46 140-194 104-150 (254)
201 cd03296 ABC_CysA_sulfate_impor 94.4 0.026 5.6E-07 54.8 2.5 30 135-164 22-51 (239)
202 PRK11124 artP arginine transpo 94.4 0.026 5.7E-07 54.8 2.5 29 136-164 23-51 (242)
203 cd03295 ABC_OpuCA_Osmoprotecti 94.4 0.026 5.6E-07 54.9 2.5 29 136-164 22-50 (242)
204 PRK13539 cytochrome c biogenes 94.4 0.026 5.7E-07 53.7 2.4 34 131-164 17-51 (207)
205 TIGR02673 FtsE cell division A 94.4 0.026 5.7E-07 53.7 2.4 29 136-164 23-51 (214)
206 PF13671 AAA_33: AAA domain; P 94.3 0.25 5.4E-06 43.4 8.5 21 144-164 2-22 (143)
207 PRK05800 cobU adenosylcobinami 94.3 0.07 1.5E-06 49.7 5.2 23 142-164 2-24 (170)
208 cd03301 ABC_MalK_N The N-termi 94.3 0.027 5.8E-07 53.5 2.4 29 136-164 21-49 (213)
209 cd03298 ABC_ThiQ_thiamine_tran 94.3 0.03 6.4E-07 53.2 2.7 32 133-164 16-47 (211)
210 PRK14957 DNA polymerase III su 94.3 0.18 3.8E-06 55.4 9.0 28 140-167 36-64 (546)
211 PRK14248 phosphate ABC transpo 94.3 0.04 8.8E-07 54.5 3.7 28 136-163 42-69 (268)
212 cd03261 ABC_Org_Solvent_Resist 94.3 0.027 6E-07 54.5 2.5 29 136-164 21-49 (235)
213 cd03230 ABC_DR_subfamily_A Thi 94.3 0.028 6E-07 52.0 2.4 29 136-164 21-49 (173)
214 cd03215 ABC_Carb_Monos_II This 94.3 0.027 5.9E-07 52.4 2.3 30 136-165 21-50 (182)
215 cd03257 ABC_NikE_OppD_transpor 94.3 0.028 6E-07 53.9 2.4 30 135-164 25-54 (228)
216 PF00448 SRP54: SRP54-type pro 94.3 0.43 9.3E-06 45.4 10.5 43 143-185 3-45 (196)
217 PRK06921 hypothetical protein; 94.2 0.18 4E-06 50.3 8.3 29 140-168 116-144 (266)
218 cd03247 ABCC_cytochrome_bd The 94.2 0.03 6.5E-07 51.9 2.5 33 133-165 20-52 (178)
219 PRK08727 hypothetical protein; 94.2 0.57 1.2E-05 45.6 11.6 27 142-168 42-68 (233)
220 COG0444 DppD ABC-type dipeptid 94.2 0.034 7.4E-07 56.6 3.0 37 129-165 18-55 (316)
221 PRK14240 phosphate transporter 94.2 0.029 6.2E-07 54.8 2.5 31 133-163 21-51 (250)
222 TIGR01978 sufC FeS assembly AT 94.2 0.029 6.3E-07 54.4 2.5 30 135-164 20-49 (243)
223 PRK13543 cytochrome c biogenes 94.2 0.029 6.2E-07 53.7 2.4 30 135-164 31-60 (214)
224 PRK13541 cytochrome c biogenes 94.2 0.03 6.4E-07 52.7 2.4 34 131-164 16-49 (195)
225 cd03251 ABCC_MsbA MsbA is an e 94.2 0.03 6.5E-07 54.0 2.5 30 135-164 22-51 (234)
226 PRK14267 phosphate ABC transpo 94.2 0.03 6.5E-07 54.8 2.5 30 135-164 24-53 (253)
227 TIGR00455 apsK adenylylsulfate 94.2 0.5 1.1E-05 43.9 10.6 29 139-167 16-44 (184)
228 cd03214 ABC_Iron-Siderophores_ 94.2 0.025 5.4E-07 52.6 1.8 30 135-164 19-48 (180)
229 PRK14241 phosphate transporter 94.2 0.029 6.4E-07 55.1 2.4 30 135-164 24-53 (258)
230 cd03263 ABC_subfamily_A The AB 94.1 0.03 6.6E-07 53.5 2.4 30 135-164 22-51 (220)
231 PRK14274 phosphate ABC transpo 94.1 0.031 6.7E-07 55.0 2.5 30 135-164 32-61 (259)
232 cd03245 ABCC_bacteriocin_expor 94.1 0.031 6.6E-07 53.4 2.4 29 136-164 25-53 (220)
233 KOG1434|consensus 94.1 0.0041 8.9E-08 61.2 -3.6 120 122-255 94-225 (335)
234 PRK06893 DNA replication initi 94.1 0.19 4E-06 48.8 7.9 33 143-175 41-73 (229)
235 cd03252 ABCC_Hemolysin The ABC 94.1 0.03 6.5E-07 54.2 2.4 31 134-164 21-51 (237)
236 cd03266 ABC_NatA_sodium_export 94.1 0.031 6.7E-07 53.3 2.5 30 136-165 26-55 (218)
237 PRK08118 topology modulation p 94.1 0.034 7.4E-07 51.4 2.6 24 142-165 2-25 (167)
238 COG1127 Ttg2A ABC-type transpo 94.1 0.026 5.6E-07 55.4 1.8 46 131-176 23-69 (263)
239 PRK14242 phosphate transporter 94.1 0.03 6.6E-07 54.8 2.4 29 136-164 27-55 (253)
240 cd03223 ABCD_peroxisomal_ALDP 94.1 0.033 7.2E-07 51.2 2.5 31 135-165 21-51 (166)
241 TIGR01184 ntrCD nitrate transp 94.1 0.032 6.8E-07 54.1 2.4 29 136-164 6-34 (230)
242 cd03246 ABCC_Protease_Secretio 94.1 0.035 7.7E-07 51.2 2.6 29 136-164 23-51 (173)
243 cd03290 ABCC_SUR1_N The SUR do 94.1 0.032 7E-07 53.3 2.4 29 136-164 22-50 (218)
244 TIGR02770 nickel_nikD nickel i 94.1 0.032 6.8E-07 54.0 2.4 30 136-165 7-36 (230)
245 PRK14262 phosphate ABC transpo 94.1 0.032 7E-07 54.5 2.4 29 135-163 23-51 (250)
246 PRK11248 tauB taurine transpor 94.1 0.033 7.1E-07 55.0 2.5 29 136-164 22-50 (255)
247 PRK05595 replicative DNA helic 94.1 0.066 1.4E-06 57.3 5.0 53 123-175 182-236 (444)
248 PRK14250 phosphate ABC transpo 94.0 0.033 7.2E-07 54.2 2.5 32 133-164 21-52 (241)
249 COG1126 GlnQ ABC-type polar am 94.0 0.033 7.1E-07 53.9 2.4 33 130-162 16-49 (240)
250 PRK15177 Vi polysaccharide exp 94.0 0.034 7.4E-07 53.3 2.5 37 136-172 8-44 (213)
251 PRK13646 cbiO cobalt transport 94.0 0.026 5.7E-07 56.6 1.8 30 136-165 28-57 (286)
252 PRK10908 cell division protein 94.0 0.033 7.3E-07 53.4 2.5 29 136-164 23-51 (222)
253 PRK11701 phnK phosphonate C-P 94.0 0.033 7.1E-07 54.8 2.5 32 133-164 24-55 (258)
254 cd03231 ABC_CcmA_heme_exporter 94.0 0.034 7.3E-07 52.7 2.5 30 135-164 20-49 (201)
255 PRK10771 thiQ thiamine transpo 94.0 0.032 7E-07 53.9 2.3 32 133-164 17-48 (232)
256 PRK05636 replicative DNA helic 94.0 0.055 1.2E-06 58.9 4.3 47 123-169 246-293 (505)
257 PRK08840 replicative DNA helic 94.0 0.049 1.1E-06 58.7 3.9 46 123-168 198-244 (464)
258 PRK10584 putative ABC transpor 94.0 0.034 7.4E-07 53.5 2.5 29 136-164 31-59 (228)
259 PRK09493 glnQ glutamine ABC tr 94.0 0.034 7.4E-07 54.0 2.5 30 135-164 21-50 (240)
260 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.0 0.033 7.1E-07 54.0 2.4 35 131-165 18-53 (238)
261 PRK11264 putative amino-acid A 94.0 0.034 7.5E-07 54.2 2.5 29 136-164 24-52 (250)
262 PRK10575 iron-hydroxamate tran 94.0 0.032 7E-07 55.2 2.3 30 135-164 31-60 (265)
263 PRK11629 lolD lipoprotein tran 94.0 0.035 7.6E-07 53.7 2.5 29 136-164 30-58 (233)
264 COG0194 Gmk Guanylate kinase [ 94.0 0.17 3.7E-06 47.9 6.9 86 140-248 3-101 (191)
265 cd03268 ABC_BcrA_bacitracin_re 94.0 0.036 7.7E-07 52.6 2.5 30 136-165 21-50 (208)
266 COG1136 SalX ABC-type antimicr 94.0 0.036 7.8E-07 54.1 2.5 35 129-163 18-53 (226)
267 PRK10895 lipopolysaccharide AB 93.9 0.036 7.9E-07 53.8 2.6 32 134-165 22-53 (241)
268 PRK10253 iron-enterobactin tra 93.9 0.032 6.9E-07 55.2 2.2 29 136-164 28-56 (265)
269 PRK14949 DNA polymerase III su 93.9 0.14 3.1E-06 58.8 7.6 108 142-270 39-149 (944)
270 cd03217 ABC_FeS_Assembly ABC-t 93.9 0.036 7.7E-07 52.5 2.4 30 135-164 20-49 (200)
271 PRK14239 phosphate transporter 93.9 0.035 7.6E-07 54.2 2.4 29 135-163 25-53 (252)
272 PRK07261 topology modulation p 93.9 0.039 8.4E-07 51.2 2.5 23 142-164 1-23 (171)
273 cd03267 ABC_NatA_like Similar 93.9 0.036 7.8E-07 53.9 2.4 29 136-164 42-70 (236)
274 PF13245 AAA_19: Part of AAA d 93.9 0.06 1.3E-06 43.4 3.3 26 142-167 11-36 (76)
275 cd03248 ABCC_TAP TAP, the Tran 93.9 0.038 8.2E-07 53.1 2.4 29 136-164 35-63 (226)
276 TIGR01188 drrA daunorubicin re 93.8 0.038 8.2E-07 55.9 2.5 29 136-164 14-42 (302)
277 TIGR02323 CP_lyasePhnK phospho 93.8 0.037 8.1E-07 54.1 2.4 30 135-164 23-52 (253)
278 TIGR01288 nodI ATP-binding ABC 93.8 0.037 7.9E-07 56.0 2.4 29 136-164 25-53 (303)
279 PRK11247 ssuB aliphatic sulfon 93.8 0.038 8.3E-07 54.7 2.5 30 135-164 32-61 (257)
280 PRK06904 replicative DNA helic 93.8 0.052 1.1E-06 58.6 3.7 60 123-183 202-262 (472)
281 PRK14273 phosphate ABC transpo 93.8 0.039 8.4E-07 54.1 2.5 30 136-165 28-57 (254)
282 PRK14256 phosphate ABC transpo 93.8 0.038 8.2E-07 54.1 2.4 29 136-164 25-53 (252)
283 PRK15056 manganese/iron transp 93.8 0.038 8.2E-07 55.0 2.5 32 133-164 25-56 (272)
284 PRK15093 antimicrobial peptide 93.8 0.038 8.2E-07 56.7 2.5 36 129-164 20-56 (330)
285 PRK10851 sulfate/thiosulfate t 93.8 0.038 8.2E-07 57.4 2.5 34 131-164 17-51 (353)
286 PRK09183 transposase/IS protei 93.8 0.054 1.2E-06 53.8 3.5 30 138-167 99-128 (259)
287 TIGR00959 ffh signal recogniti 93.8 0.87 1.9E-05 48.7 12.8 47 141-187 99-145 (428)
288 cd03369 ABCC_NFT1 Domain 2 of 93.8 0.039 8.4E-07 52.3 2.4 29 136-164 29-57 (207)
289 TIGR03005 ectoine_ehuA ectoine 93.8 0.039 8.5E-07 54.0 2.5 30 135-164 20-49 (252)
290 PRK07004 replicative DNA helic 93.8 0.094 2E-06 56.5 5.6 45 124-168 195-240 (460)
291 PRK07994 DNA polymerase III su 93.8 0.18 3.9E-06 56.4 7.9 107 144-269 41-148 (647)
292 cd03233 ABC_PDR_domain1 The pl 93.8 0.035 7.6E-07 52.7 2.0 30 136-165 28-57 (202)
293 TIGR01618 phage_P_loop phage n 93.8 0.21 4.5E-06 48.6 7.4 21 142-162 13-33 (220)
294 TIGR02324 CP_lyasePhnL phospho 93.8 0.04 8.7E-07 52.8 2.5 29 136-164 29-57 (224)
295 PRK10418 nikD nickel transport 93.8 0.039 8.4E-07 54.2 2.4 30 135-164 23-52 (254)
296 TIGR03740 galliderm_ABC gallid 93.8 0.04 8.7E-07 52.9 2.4 29 136-164 21-49 (223)
297 PRK10247 putative ABC transpor 93.8 0.041 8.8E-07 53.1 2.5 29 136-164 28-56 (225)
298 PRK13648 cbiO cobalt transport 93.8 0.04 8.7E-07 54.6 2.5 32 133-164 27-58 (269)
299 TIGR03771 anch_rpt_ABC anchore 93.7 0.041 9E-07 53.0 2.5 28 137-164 2-29 (223)
300 PRK08006 replicative DNA helic 93.7 0.059 1.3E-06 58.2 3.9 53 123-175 205-259 (471)
301 COG4167 SapF ABC-type antimicr 93.7 0.04 8.6E-07 52.2 2.3 28 136-163 34-61 (267)
302 PRK09544 znuC high-affinity zi 93.7 0.042 9E-07 54.2 2.5 29 136-164 25-53 (251)
303 TIGR03411 urea_trans_UrtD urea 93.7 0.041 9E-07 53.4 2.5 29 136-164 23-51 (242)
304 PRK14253 phosphate ABC transpo 93.7 0.041 9E-07 53.7 2.5 29 136-164 24-52 (249)
305 PRK11144 modC molybdate transp 93.7 0.049 1.1E-06 56.4 3.1 34 131-164 14-47 (352)
306 PRK11831 putative ABC transpor 93.7 0.041 8.9E-07 54.6 2.4 32 133-164 25-56 (269)
307 PRK13548 hmuV hemin importer A 93.7 0.041 9E-07 54.2 2.4 29 136-164 23-51 (258)
308 PRK13645 cbiO cobalt transport 93.7 0.041 8.8E-07 55.2 2.4 30 136-165 32-61 (289)
309 TIGR00972 3a0107s01c2 phosphat 93.7 0.042 9.2E-07 53.6 2.5 30 135-164 21-50 (247)
310 cd03228 ABCC_MRP_Like The MRP 93.7 0.044 9.6E-07 50.5 2.5 29 136-164 23-51 (171)
311 cd03213 ABCG_EPDR ABCG transpo 93.7 0.043 9.3E-07 51.8 2.4 29 136-164 30-58 (194)
312 PRK14272 phosphate ABC transpo 93.7 0.042 9.2E-07 53.6 2.4 29 136-164 25-53 (252)
313 PRK14245 phosphate ABC transpo 93.6 0.043 9.3E-07 53.7 2.5 30 134-163 22-51 (250)
314 PRK14270 phosphate ABC transpo 93.6 0.043 9.3E-07 53.7 2.5 29 136-164 25-53 (251)
315 PRK06321 replicative DNA helic 93.6 0.061 1.3E-06 58.1 3.8 46 123-168 207-253 (472)
316 PRK08939 primosomal protein Dn 93.6 0.25 5.4E-06 50.4 8.1 29 140-168 155-183 (306)
317 PRK13538 cytochrome c biogenes 93.6 0.044 9.6E-07 51.9 2.4 32 133-164 19-50 (204)
318 PRK06749 replicative DNA helic 93.6 0.07 1.5E-06 56.9 4.2 53 123-175 167-220 (428)
319 PRK11432 fbpC ferric transport 93.6 0.043 9.2E-07 57.0 2.5 33 131-163 21-54 (351)
320 PRK14243 phosphate transporter 93.6 0.044 9.6E-07 54.2 2.5 30 135-164 30-59 (264)
321 PRK14263 phosphate ABC transpo 93.6 0.063 1.4E-06 53.1 3.6 30 135-164 28-57 (261)
322 PRK11650 ugpC glycerol-3-phosp 93.6 0.043 9.2E-07 57.1 2.5 31 134-164 23-53 (356)
323 PRK13632 cbiO cobalt transport 93.6 0.044 9.5E-07 54.5 2.5 29 136-164 30-58 (271)
324 PRK11308 dppF dipeptide transp 93.6 0.044 9.4E-07 56.3 2.5 35 130-164 29-64 (327)
325 cd03294 ABC_Pro_Gly_Bertaine T 93.6 0.044 9.5E-07 54.4 2.4 30 135-164 44-73 (269)
326 COG1134 TagH ABC-type polysacc 93.6 0.045 9.7E-07 53.8 2.4 31 133-163 45-75 (249)
327 PRK13649 cbiO cobalt transport 93.6 0.043 9.4E-07 54.7 2.4 29 136-164 28-56 (280)
328 cd03253 ABCC_ATM1_transporter 93.6 0.046 9.9E-07 52.8 2.5 32 133-164 19-50 (236)
329 PRK13641 cbiO cobalt transport 93.6 0.034 7.3E-07 55.9 1.6 30 135-164 27-56 (287)
330 PRK10744 pstB phosphate transp 93.6 0.045 9.7E-07 54.0 2.4 29 136-164 34-62 (260)
331 TIGR00968 3a0106s01 sulfate AB 93.5 0.046 9.9E-07 53.1 2.5 29 136-164 21-49 (237)
332 TIGR03265 PhnT2 putative 2-ami 93.5 0.045 9.7E-07 56.8 2.5 31 134-164 23-53 (353)
333 TIGR02769 nickel_nikE nickel i 93.5 0.046 9.9E-07 54.1 2.5 32 133-164 29-60 (265)
334 PRK14237 phosphate transporter 93.5 0.047 1E-06 54.1 2.5 29 136-164 41-69 (267)
335 PRK09473 oppD oligopeptide tra 93.5 0.041 8.8E-07 56.6 2.2 36 129-164 29-65 (330)
336 PRK14238 phosphate transporter 93.5 0.047 1E-06 54.3 2.5 29 136-164 45-73 (271)
337 PRK07773 replicative DNA helic 93.5 0.1 2.3E-06 60.5 5.7 47 123-169 198-245 (886)
338 COG3839 MalK ABC-type sugar tr 93.5 0.046 9.9E-07 56.4 2.5 30 134-163 22-51 (338)
339 PRK14260 phosphate ABC transpo 93.5 0.046 9.9E-07 53.9 2.4 30 135-164 27-56 (259)
340 PRK14249 phosphate ABC transpo 93.5 0.047 1E-06 53.4 2.5 29 136-164 25-53 (251)
341 cd03234 ABCG_White The White s 93.5 0.047 1E-06 52.6 2.4 31 135-165 27-57 (226)
342 PRK13638 cbiO cobalt transport 93.5 0.043 9.4E-07 54.5 2.2 29 136-164 22-50 (271)
343 PRK14251 phosphate ABC transpo 93.5 0.047 1E-06 53.4 2.5 30 135-164 24-53 (251)
344 COG1120 FepC ABC-type cobalami 93.5 0.042 9.1E-07 54.6 2.1 30 136-165 23-52 (258)
345 PRK11300 livG leucine/isoleuci 93.5 0.046 1E-06 53.5 2.4 29 136-164 26-54 (255)
346 COG4181 Predicted ABC-type tra 93.5 0.048 1E-06 51.2 2.3 28 136-163 31-58 (228)
347 PRK11614 livF leucine/isoleuci 93.5 0.043 9.2E-07 53.2 2.1 29 136-164 26-54 (237)
348 COG4608 AppF ABC-type oligopep 93.5 0.051 1.1E-06 54.1 2.7 47 129-176 26-73 (268)
349 PRK09984 phosphonate/organopho 93.5 0.046 1E-06 53.9 2.4 29 136-164 25-53 (262)
350 TIGR02880 cbbX_cfxQ probable R 93.5 0.96 2.1E-05 45.5 11.9 28 140-167 57-84 (284)
351 PF13521 AAA_28: AAA domain; P 93.4 0.069 1.5E-06 48.6 3.3 34 143-185 1-34 (163)
352 PRK10619 histidine/lysine/argi 93.4 0.048 1E-06 53.6 2.4 29 136-164 26-54 (257)
353 cd03244 ABCC_MRP_domain2 Domai 93.4 0.05 1.1E-06 52.0 2.5 29 136-164 25-53 (221)
354 PLN00020 ribulose bisphosphate 93.4 0.15 3.3E-06 53.3 6.1 24 142-165 149-172 (413)
355 CHL00131 ycf16 sulfate ABC tra 93.4 0.044 9.6E-07 53.5 2.1 28 136-163 28-55 (252)
356 PRK14266 phosphate ABC transpo 93.4 0.05 1.1E-06 53.1 2.5 32 133-164 21-52 (250)
357 PRK14268 phosphate ABC transpo 93.4 0.049 1.1E-06 53.6 2.5 30 135-164 32-61 (258)
358 PRK14244 phosphate ABC transpo 93.4 0.05 1.1E-06 53.2 2.5 30 135-164 25-54 (251)
359 cd03237 ABC_RNaseL_inhibitor_d 93.4 0.052 1.1E-06 53.4 2.6 28 137-164 21-48 (246)
360 PRK14265 phosphate ABC transpo 93.4 0.049 1.1E-06 54.3 2.5 29 135-163 40-68 (274)
361 PRK10419 nikE nickel transport 93.4 0.049 1.1E-06 54.1 2.4 31 134-164 31-61 (268)
362 PRK12323 DNA polymerase III su 93.4 0.23 5.1E-06 55.4 7.8 26 142-167 39-64 (700)
363 cd03232 ABC_PDR_domain2 The pl 93.4 0.05 1.1E-06 51.2 2.3 28 136-163 28-55 (192)
364 PRK13639 cbiO cobalt transport 93.4 0.048 1E-06 54.4 2.3 32 133-164 20-51 (275)
365 COG4987 CydC ABC-type transpor 93.4 0.051 1.1E-06 58.7 2.6 38 131-168 353-391 (573)
366 PRK14261 phosphate ABC transpo 93.4 0.051 1.1E-06 53.2 2.5 28 136-163 27-54 (253)
367 TIGR00750 lao LAO/AO transport 93.4 0.1 2.2E-06 52.9 4.7 40 137-176 30-69 (300)
368 PRK15079 oligopeptide ABC tran 93.3 0.05 1.1E-06 56.0 2.5 35 130-164 35-70 (331)
369 TIGR01189 ccmA heme ABC export 93.3 0.054 1.2E-06 51.0 2.5 30 135-164 20-49 (198)
370 cd03264 ABC_drug_resistance_li 93.3 0.049 1.1E-06 51.8 2.2 29 135-164 20-48 (211)
371 PRK14271 phosphate ABC transpo 93.3 0.052 1.1E-06 54.2 2.5 32 133-164 39-70 (276)
372 PRK14269 phosphate ABC transpo 93.3 0.053 1.1E-06 53.0 2.5 30 135-164 22-51 (246)
373 PRK13547 hmuV hemin importer A 93.3 0.051 1.1E-06 54.3 2.4 29 136-164 22-50 (272)
374 PRK09452 potA putrescine/sperm 93.3 0.05 1.1E-06 57.0 2.4 34 131-164 29-63 (375)
375 cd03300 ABC_PotA_N PotA is an 93.3 0.043 9.4E-07 53.1 1.8 30 136-165 21-50 (232)
376 cd03270 ABC_UvrA_I The excisio 93.3 0.055 1.2E-06 52.4 2.5 25 136-160 16-40 (226)
377 PRK14236 phosphate transporter 93.3 0.052 1.1E-06 54.0 2.4 31 134-164 44-74 (272)
378 CHL00181 cbbX CbbX; Provisiona 93.3 0.96 2.1E-05 45.7 11.6 30 137-166 55-84 (287)
379 PRK14235 phosphate transporter 93.3 0.055 1.2E-06 53.7 2.6 31 135-165 39-69 (267)
380 TIGR01277 thiQ thiamine ABC tr 93.3 0.054 1.2E-06 51.6 2.4 33 133-165 16-48 (213)
381 PRK14264 phosphate ABC transpo 93.2 0.053 1.2E-06 55.0 2.4 31 134-164 64-94 (305)
382 PRK13643 cbiO cobalt transport 93.2 0.052 1.1E-06 54.6 2.4 32 133-164 24-55 (288)
383 PRK03846 adenylylsulfate kinas 93.2 0.59 1.3E-05 44.1 9.4 29 139-167 22-50 (198)
384 COG4555 NatA ABC-type Na+ tran 93.2 0.057 1.2E-06 51.9 2.4 32 133-164 20-51 (245)
385 cd00561 CobA_CobO_BtuR ATP:cor 93.2 1.3 2.8E-05 40.9 11.3 97 143-252 4-106 (159)
386 COG3840 ThiQ ABC-type thiamine 93.2 0.059 1.3E-06 51.1 2.4 32 133-164 17-48 (231)
387 PRK14958 DNA polymerase III su 93.2 0.25 5.4E-06 53.9 7.7 26 142-167 39-64 (509)
388 PRK14275 phosphate ABC transpo 93.2 0.056 1.2E-06 54.3 2.5 31 133-163 57-87 (286)
389 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.2 0.055 1.2E-06 48.6 2.2 29 136-164 21-49 (144)
390 PRK11231 fecE iron-dicitrate t 93.2 0.055 1.2E-06 53.1 2.4 29 136-164 23-51 (255)
391 PRK11022 dppD dipeptide transp 93.2 0.054 1.2E-06 55.6 2.4 36 129-164 20-56 (326)
392 PRK14723 flhF flagellar biosyn 93.2 0.53 1.1E-05 53.6 10.3 31 138-168 182-212 (767)
393 PRK13651 cobalt transporter AT 93.2 0.055 1.2E-06 55.0 2.4 31 134-164 26-56 (305)
394 PRK13640 cbiO cobalt transport 93.1 0.055 1.2E-06 54.2 2.4 29 136-164 28-56 (282)
395 PF07088 GvpD: GvpD gas vesicl 93.1 0.87 1.9E-05 48.0 11.0 41 135-176 4-44 (484)
396 COG3854 SpoIIIAA ncharacterize 93.1 0.086 1.9E-06 51.6 3.5 24 144-167 140-163 (308)
397 PRK15112 antimicrobial peptide 93.1 0.059 1.3E-06 53.4 2.5 32 133-164 31-62 (267)
398 PRK07940 DNA polymerase III su 93.1 0.48 1E-05 50.1 9.4 28 140-167 35-62 (394)
399 TIGR02314 ABC_MetN D-methionin 93.1 0.057 1.2E-06 55.9 2.5 35 130-164 19-54 (343)
400 KOG0744|consensus 93.1 0.31 6.8E-06 49.9 7.5 90 141-258 177-267 (423)
401 PRK13536 nodulation factor exp 93.1 0.037 8E-07 57.2 1.1 36 130-165 55-91 (340)
402 PRK14259 phosphate ABC transpo 93.1 0.058 1.2E-06 53.6 2.4 29 136-164 34-62 (269)
403 cd02027 APSK Adenosine 5'-phos 93.1 0.79 1.7E-05 41.4 9.6 24 144-167 2-25 (149)
404 PRK14087 dnaA chromosomal repl 93.1 0.29 6.4E-06 52.5 7.9 32 143-174 143-174 (450)
405 PRK10867 signal recognition pa 93.1 0.76 1.6E-05 49.2 10.9 40 140-180 99-139 (433)
406 PRK07952 DNA replication prote 93.1 0.28 6E-06 48.5 7.1 43 142-192 100-142 (244)
407 PF13238 AAA_18: AAA domain; P 93.1 0.062 1.3E-06 46.0 2.3 22 144-165 1-22 (129)
408 PRK13647 cbiO cobalt transport 93.0 0.06 1.3E-06 53.7 2.4 29 136-164 26-54 (274)
409 TIGR00635 ruvB Holliday juncti 93.0 0.19 4.2E-06 50.4 6.2 25 141-165 30-54 (305)
410 PRK13546 teichoic acids export 93.0 0.06 1.3E-06 53.5 2.4 32 133-164 42-73 (264)
411 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 93.0 0.061 1.3E-06 51.9 2.4 29 136-164 43-71 (224)
412 PRK06731 flhF flagellar biosyn 93.0 0.91 2E-05 45.5 10.8 50 140-189 74-123 (270)
413 TIGR02982 heterocyst_DevA ABC 93.0 0.064 1.4E-06 51.4 2.5 29 135-163 25-53 (220)
414 cd00267 ABC_ATPase ABC (ATP-bi 93.0 0.066 1.4E-06 48.5 2.5 33 133-165 17-49 (157)
415 PRK13634 cbiO cobalt transport 93.0 0.049 1.1E-06 54.8 1.8 30 136-165 28-57 (290)
416 cd03287 ABC_MSH3_euk MutS3 hom 93.0 0.51 1.1E-05 45.9 8.8 38 130-167 20-57 (222)
417 PF03205 MobB: Molybdopterin g 93.0 0.12 2.6E-06 46.6 4.0 37 143-179 2-38 (140)
418 COG4604 CeuD ABC-type enteroch 93.0 0.18 3.8E-06 48.5 5.2 63 134-196 20-84 (252)
419 TIGR03522 GldA_ABC_ATP gliding 92.9 0.063 1.4E-06 54.3 2.5 29 136-164 23-51 (301)
420 PRK03695 vitamin B12-transport 92.9 0.057 1.2E-06 52.9 2.1 32 133-164 14-45 (248)
421 COG4586 ABC-type uncharacteriz 92.9 0.057 1.2E-06 54.0 2.0 55 130-184 39-93 (325)
422 PRK13635 cbiO cobalt transport 92.9 0.053 1.1E-06 54.3 1.9 29 136-164 28-56 (279)
423 PRK09580 sufC cysteine desulfu 92.9 0.059 1.3E-06 52.4 2.1 29 136-164 22-50 (248)
424 PRK13637 cbiO cobalt transport 92.9 0.064 1.4E-06 53.9 2.4 34 131-164 22-56 (287)
425 PRK11000 maltose/maltodextrin 92.9 0.063 1.4E-06 56.1 2.5 30 135-164 23-52 (369)
426 COG1703 ArgK Putative periplas 92.9 0.092 2E-06 53.1 3.5 47 130-176 39-86 (323)
427 PRK13650 cbiO cobalt transport 92.9 0.065 1.4E-06 53.6 2.4 32 133-164 25-56 (279)
428 PRK13633 cobalt transporter AT 92.9 0.052 1.1E-06 54.2 1.8 30 136-165 31-60 (280)
429 PRK05703 flhF flagellar biosyn 92.9 0.65 1.4E-05 49.5 10.1 39 138-176 218-258 (424)
430 COG4172 ABC-type uncharacteriz 92.9 0.08 1.7E-06 55.6 3.1 37 129-165 300-337 (534)
431 PRK14254 phosphate ABC transpo 92.9 0.066 1.4E-06 53.7 2.5 29 136-164 60-88 (285)
432 PRK14252 phosphate ABC transpo 92.9 0.067 1.5E-06 52.9 2.5 33 132-164 33-65 (265)
433 PRK11889 flhF flagellar biosyn 92.9 0.58 1.3E-05 49.6 9.4 43 139-181 239-281 (436)
434 cd03291 ABCC_CFTR1 The CFTR su 92.9 0.067 1.5E-06 53.8 2.5 33 133-165 55-87 (282)
435 cd03288 ABCC_SUR2 The SUR doma 92.8 0.066 1.4E-06 52.7 2.4 29 136-164 42-70 (257)
436 PRK13644 cbiO cobalt transport 92.8 0.067 1.4E-06 53.3 2.4 32 133-164 20-51 (274)
437 cd02025 PanK Pantothenate kina 92.8 0.11 2.4E-06 50.3 3.9 23 144-166 2-24 (220)
438 PRK11607 potG putrescine trans 92.8 0.064 1.4E-06 56.3 2.4 31 134-164 38-68 (377)
439 TIGR03873 F420-0_ABC_ATP propo 92.8 0.064 1.4E-06 52.7 2.2 29 136-164 22-50 (256)
440 PRK13537 nodulation ABC transp 92.8 0.051 1.1E-06 55.2 1.6 36 130-165 21-57 (306)
441 PRK14246 phosphate ABC transpo 92.8 0.068 1.5E-06 52.8 2.4 30 135-164 30-59 (257)
442 cd03299 ABC_ModC_like Archeal 92.8 0.069 1.5E-06 51.8 2.4 30 135-164 19-48 (235)
443 TIGR02868 CydC thiol reductant 92.8 0.054 1.2E-06 58.9 1.8 30 135-164 355-384 (529)
444 PRK14951 DNA polymerase III su 92.7 0.28 6E-06 54.7 7.3 26 142-167 39-64 (618)
445 KOG0057|consensus 92.7 0.1 2.2E-06 56.6 3.7 31 136-166 373-403 (591)
446 cd02028 UMPK_like Uridine mono 92.7 0.13 2.7E-06 48.2 4.0 32 144-175 2-33 (179)
447 KOG0733|consensus 92.7 0.29 6.3E-06 53.8 7.1 94 144-247 226-334 (802)
448 TIGR01186 proV glycine betaine 92.7 0.049 1.1E-06 56.8 1.3 32 134-165 12-43 (363)
449 TIGR03258 PhnT 2-aminoethylpho 92.7 0.072 1.6E-06 55.6 2.5 31 134-164 24-54 (362)
450 PRK13642 cbiO cobalt transport 92.7 0.07 1.5E-06 53.2 2.4 35 131-165 22-57 (277)
451 cd03289 ABCC_CFTR2 The CFTR su 92.7 0.073 1.6E-06 53.4 2.5 30 136-165 25-54 (275)
452 COG1125 OpuBA ABC-type proline 92.7 0.074 1.6E-06 52.8 2.4 36 128-163 13-49 (309)
453 TIGR01425 SRP54_euk signal rec 92.6 0.83 1.8E-05 48.8 10.4 37 140-176 99-135 (429)
454 PRK08233 hypothetical protein; 92.6 0.083 1.8E-06 48.5 2.6 26 140-165 2-27 (182)
455 PRK14962 DNA polymerase III su 92.6 0.68 1.5E-05 50.1 10.0 25 143-167 38-62 (472)
456 PTZ00301 uridine kinase; Provi 92.6 0.13 2.8E-06 49.6 4.0 25 143-167 5-29 (210)
457 KOG0743|consensus 92.6 0.12 2.7E-06 54.7 4.1 62 144-220 238-300 (457)
458 PRK11153 metN DL-methionine tr 92.6 0.075 1.6E-06 54.9 2.4 30 135-164 25-54 (343)
459 cd03297 ABC_ModC_molybdenum_tr 92.6 0.084 1.8E-06 50.3 2.6 31 133-164 16-46 (214)
460 PF01695 IstB_IS21: IstB-like 92.5 0.15 3.2E-06 47.8 4.2 48 138-193 44-91 (178)
461 TIGR02142 modC_ABC molybdenum 92.5 0.095 2.1E-06 54.4 3.2 32 133-164 15-46 (354)
462 PRK14963 DNA polymerase III su 92.5 0.85 1.8E-05 49.8 10.5 26 142-167 37-62 (504)
463 TIGR00235 udk uridine kinase. 92.5 0.081 1.8E-06 50.3 2.4 26 140-165 5-30 (207)
464 PRK14964 DNA polymerase III su 92.5 0.67 1.5E-05 50.3 9.6 25 142-166 36-60 (491)
465 PRK13631 cbiO cobalt transport 92.4 0.081 1.8E-06 54.2 2.5 34 131-164 41-75 (320)
466 COG1474 CDC6 Cdc6-related prot 92.4 0.39 8.5E-06 50.2 7.6 89 142-253 43-135 (366)
467 PRK14258 phosphate ABC transpo 92.4 0.083 1.8E-06 52.2 2.5 30 135-164 27-56 (261)
468 PRK13341 recombination factor 92.4 0.27 5.9E-06 55.8 6.8 28 138-165 49-76 (725)
469 PRK12726 flagellar biosynthesi 92.4 0.77 1.7E-05 48.4 9.6 46 137-182 202-247 (407)
470 COG0552 FtsY Signal recognitio 92.4 0.72 1.6E-05 47.4 9.2 95 140-253 138-233 (340)
471 PRK00300 gmk guanylate kinase; 92.3 0.093 2E-06 49.4 2.6 26 139-164 3-28 (205)
472 PRK05480 uridine/cytidine kina 92.3 0.15 3.3E-06 48.4 4.1 27 139-165 4-30 (209)
473 PRK13652 cbiO cobalt transport 92.3 0.088 1.9E-06 52.5 2.5 31 135-165 24-54 (277)
474 PRK12727 flagellar biosynthesi 92.3 0.38 8.2E-06 52.6 7.4 33 136-168 345-377 (559)
475 PRK14531 adenylate kinase; Pro 92.3 0.098 2.1E-06 48.8 2.6 23 142-164 3-25 (183)
476 PRK09435 membrane ATPase/prote 92.2 0.18 3.9E-06 52.0 4.7 39 138-176 53-91 (332)
477 PRK14530 adenylate kinase; Pro 92.1 0.11 2.3E-06 49.8 2.8 26 140-165 2-27 (215)
478 PRK09536 btuD corrinoid ABC tr 92.1 0.088 1.9E-06 55.7 2.3 29 136-164 24-52 (402)
479 TIGR03263 guanyl_kin guanylate 92.0 0.092 2E-06 48.4 2.1 24 141-164 1-24 (180)
480 PRK11331 5-methylcytosine-spec 92.0 0.35 7.5E-06 51.8 6.7 28 138-165 191-218 (459)
481 COG1122 CbiO ABC-type cobalt t 92.0 0.097 2.1E-06 51.4 2.3 31 133-163 22-52 (235)
482 TIGR02322 phosphon_PhnN phosph 92.0 0.11 2.4E-06 47.8 2.6 25 141-165 1-25 (179)
483 COG1131 CcmA ABC-type multidru 91.9 0.073 1.6E-06 53.8 1.5 38 129-166 18-56 (293)
484 PRK11176 lipid transporter ATP 91.9 0.097 2.1E-06 57.6 2.5 31 134-164 362-392 (582)
485 TIGR03269 met_CoM_red_A2 methy 91.9 0.097 2.1E-06 56.9 2.5 34 131-164 15-49 (520)
486 PF08477 Miro: Miro-like prote 91.9 0.12 2.5E-06 43.9 2.5 22 143-164 1-22 (119)
487 PRK10636 putative ABC transpor 91.9 0.096 2.1E-06 58.6 2.4 30 135-164 21-50 (638)
488 PRK14257 phosphate ABC transpo 91.9 0.1 2.3E-06 53.6 2.5 32 134-165 101-132 (329)
489 PLN03073 ABC transporter F fam 91.8 0.091 2E-06 59.6 2.2 31 133-163 195-225 (718)
490 COG1123 ATPase components of v 91.8 0.12 2.5E-06 56.4 2.9 47 129-176 304-351 (539)
491 TIGR03574 selen_PSTK L-seryl-t 91.8 1.3 2.9E-05 43.3 10.1 32 144-175 2-33 (249)
492 PRK06696 uridine kinase; Valid 91.8 0.19 4E-06 48.5 4.1 28 140-167 21-48 (223)
493 PRK12339 2-phosphoglycerate ki 91.8 0.75 1.6E-05 43.9 8.2 24 141-164 3-26 (197)
494 PRK14960 DNA polymerase III su 91.8 0.6 1.3E-05 52.3 8.4 26 142-167 38-63 (702)
495 PRK13636 cbiO cobalt transport 91.8 0.11 2.3E-06 52.1 2.5 32 133-164 24-55 (283)
496 KOG0727|consensus 91.8 0.16 3.5E-06 50.3 3.5 64 141-216 189-258 (408)
497 PRK08084 DNA replication initi 91.8 0.13 2.7E-06 50.3 2.9 28 140-167 44-71 (235)
498 COG1618 Predicted nucleotide k 91.8 0.2 4.2E-06 46.6 3.8 35 142-178 6-40 (179)
499 CHL00195 ycf46 Ycf46; Provisio 91.7 0.57 1.2E-05 50.9 8.1 47 143-192 261-314 (489)
500 cd02023 UMPK Uridine monophosp 91.7 0.2 4.3E-06 47.1 4.0 22 144-165 2-23 (198)
No 1
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=100.00 E-value=1.4e-128 Score=1009.76 Aligned_cols=458 Identities=74% Similarity=1.138 Sum_probs=442.8
Q ss_pred CCCceEEEEEcceEEEEecCCCcceeeeeeeee---CceEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeec
Q psy2896 1 MSDGKIIQCIGSVVDVEFPHNMVPKIYNALKIE---NSELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIP 77 (467)
Q Consensus 1 ~~~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~---~~~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vp 77 (467)
||.|||++|+|+++++.|+.+..|.+|++|++. ++.+.+||+++++++.+.++||++++||++|+.|..|+++++||
T Consensus 1 ~~~G~V~~i~g~~v~~~~~~~~~~~ige~~~i~~~~~~~~~~EVv~~~~~~~~~~~~~~~~~gi~~G~~V~~tg~~~~v~ 80 (463)
T PRK09280 1 MNTGKIVQVIGPVVDVEFPRGELPKIYNALEVEKGDGKKLVLEVAQHLGDGVVRTIAMGSTDGLVRGMEVIDTGAPISVP 80 (463)
T ss_pred CCccEEEEEEccEEEEEeCCCCCccccCEEEEEeCCCCeEEEEeeEEecCCeEEEEEecCccCCCCCCEEEeCCCceEEE
Confidence 899999999999999999976567788999883 44689999997788999999999999999999999999999999
Q ss_pred CCCCCcceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhh
Q psy2896 78 VGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVN 157 (467)
Q Consensus 78 vg~~lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L 157 (467)
+|++|||||+|++|+|||+.+++...++||++.++|+|++|.++++||.||||+||+|+|||||||++|||++|+|||+|
T Consensus 81 vg~~lLGRViD~~G~pld~~~~~~~~~~~pi~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGQR~gIfa~~GvGKt~L 160 (463)
T PRK09280 81 VGKATLGRIFNVLGEPIDEKGPIGAEERWPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVL 160 (463)
T ss_pred cChhhcCCEEeeeccccCCCCCcCccceecccCCCCChHHhCCccceeccCCeeecccCCcccCCEEEeecCCCCChhHH
Confidence 99999999999999999999888777889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy2896 158 MMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFR 237 (467)
Q Consensus 158 ~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr 237 (467)
+.|+++|+++++++++||++||||++|++||++++.+.+.++ ||++|++|+|+||.+|++++|+|+++|||||
T Consensus 161 l~~i~~~~~~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~-------rsvvV~atsd~p~~~r~~a~~~a~tiAEyfr 233 (463)
T PRK09280 161 IQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLD-------KTALVFGQMNEPPGARLRVALTGLTMAEYFR 233 (463)
T ss_pred HHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcc-------eeEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999998877789999999999999999999998877776 9999999999999999999999999999999
Q ss_pred H-CCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCCCCCceeEEEEEEecCCCCCCCcccc
Q psy2896 238 D-EGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQAVYVPADDLTDPSPAT 316 (467)
Q Consensus 238 ~-~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~~~GSiT~~~tv~~~~~d~~dpi~~~ 316 (467)
+ +|+|||+++||+||||+|+|||++++||||+++|||||+|+.|++|+||||+.++||||+||||++|+||++|||||+
T Consensus 234 d~~G~~VLll~DslTR~A~A~REisl~~gepP~~~GYPpsvfs~l~~L~ERag~~~~GSITai~tVl~~gdD~~dPI~d~ 313 (463)
T PRK09280 234 DVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSITSVQAVYVPADDLTDPAPAT 313 (463)
T ss_pred HhcCCceEEEecchHHHHHHHHHHHHhcCCCCcccCcCchHHHHHHHHHHHhcCCCCCceeEEEEEECcCCCCCCcchHh
Confidence 9 999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred cccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHH
Q psy2896 317 TFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLV 396 (467)
Q Consensus 317 ~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~~~~~~~ 396 (467)
+++|+||||+|||+||++||||||||+.|+||+|++.+++++|+++++++|++|++|++++++++++||+++++.+++++
T Consensus 314 ~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~~~~~~~~~~~a~~~r~~la~y~e~e~li~i~gy~~~sd~~d~ai 393 (463)
T PRK09280 314 TFAHLDATTVLSRQIAELGIYPAVDPLDSTSRILDPLIVGEEHYDVAREVQQILQRYKELQDIIAILGMDELSEEDKLTV 393 (463)
T ss_pred hhhhcceEEEEcHHHHhCCCCCccCCccccccccccccCCHHHHHHHHHHHHHHHHhHHHHHHHHhhCCccCCHHHHHHH
Confidence 99999999999999999999999999999999997788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhcCCCCCCchhhhcccCCHHHHHHHHHhh
Q psy2896 397 ARARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAIKKSKKL 465 (467)
Q Consensus 397 ~~~~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~g~~d~~~~~~~~~~~~~~~~~~~~~~~ 465 (467)
+++++|++||+|++|++|.|||++++++++++|++.|.+|++|++|++||++|||+|++||+++|+.+.
T Consensus 394 ~~~~~i~~fL~Q~~~~~~~ft~~~~~~~~~~~~~~~l~~i~~g~~~~~~~~~~~~~g~~~~~~~~~~~~ 462 (463)
T PRK09280 394 ARARKIQRFLSQPFFVAEQFTGSPGKYVPLKDTIRGFKEILEGEYDHLPEQAFYMVGTIEEAIEKAKKL 462 (463)
T ss_pred HhhHHHHHhccCCcchhhcccCCCCcccCHHHHHHHHHHHhCCCccCCCHHHHhccCCHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999998653
No 2
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=100.00 E-value=2.6e-127 Score=997.16 Aligned_cols=455 Identities=71% Similarity=1.111 Sum_probs=439.5
Q ss_pred CCceEEEEEcceEEEEecCCCcceeeeeeeee--Cc-eEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecC
Q psy2896 2 SDGKIIQCIGSVVDVEFPHNMVPKIYNALKIE--NS-ELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPV 78 (467)
Q Consensus 2 ~~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~--~~-~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpv 78 (467)
+.|+|++|+|+++++.|+.+.+|++|+++.+. ++ .+.+||+++++++.++++||+++.||+.|+.|.+|+++++||+
T Consensus 1 ~~G~v~~v~g~~ie~~~~~~~ig~~~~~l~i~~~~~~~~~~eVv~~~~~~~v~l~~l~~~~gi~~G~~V~~t~~~~~i~v 80 (461)
T TIGR01039 1 TKGKVVQVIGPVVDVEFEQGELPRIYNALKVQNRAESELTLEVAQHLGDDTVRTIAMGSTDGLVRGLEVIDTGAPISVPV 80 (461)
T ss_pred CccEEEEEEeeEEEEEECCCCCcchheEEEEecCCCceEEEEeeeeeCCCeEEEEEccCcccCCCCCEEEeCCCceEEEc
Confidence 47999999999999999988899888777884 23 5899999966789999999999999999999999999999999
Q ss_pred CCCCcceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhhH
Q psy2896 79 GKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNM 158 (467)
Q Consensus 79 g~~lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L~ 158 (467)
|++|||||+|++|+|||+.+++....+||++.++|++++|.+++++|.||||+||+|+|||||||++|||++|+|||+|+
T Consensus 81 g~~lLGRViD~~G~pid~~~~~~~~~~~pi~~~~p~~~~R~~~~e~l~TGiraID~l~pig~GQr~~If~~~G~GKt~L~ 160 (461)
T TIGR01039 81 GKETLGRIFNVLGEPIDEKGPIPAKERWPIHRKAPSFEEQSTKVEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLI 160 (461)
T ss_pred ChhhcCCEEccCCcccCCCCCCCCCcccccccCCCChhHcCCcccccccCceeecccCCcccCCEEEeecCCCCChHHHH
Confidence 99999999999999999998877777899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy2896 159 MELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRD 238 (467)
Q Consensus 159 ~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~ 238 (467)
.|+++|+++++++++||++||||+||++||++++.+.++++ |+++|++|+|+||.+|++++|+|+++|||||+
T Consensus 161 ~~~~~~~~~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~-------rtvvV~atsd~p~~~R~~a~~~a~tiAEyfrd 233 (461)
T TIGR01039 161 QELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVID-------KTALVYGQMNEPPGARMRVALTGLTMAEYFRD 233 (461)
T ss_pred HHHHHHHHhcCCCeEEEEEecCCchHHHHHHHHHHhcCCcc-------eeEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999998877889999999999999999999998887776 99999999999999999999999999999999
Q ss_pred -CCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCCCCCceeEEEEEEecCCCCCCCccccc
Q psy2896 239 -EGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQAVYVPADDLTDPSPATT 317 (467)
Q Consensus 239 -~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~~~GSiT~~~tv~~~~~d~~dpi~~~~ 317 (467)
+|+|||+++||+||||+|+||||+++||||+++|||||+|+.|++|+||||+.++||||+||||++|+||++|||||++
T Consensus 234 ~~G~~VLll~DslTR~A~A~REisl~~gepP~~~GYPpsvfs~l~~L~ERag~~~~GSITai~tVl~~gdD~~dPi~d~~ 313 (461)
T TIGR01039 234 EQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGELQERITSTKTGSITSVQAVYVPADDLTDPAPATT 313 (461)
T ss_pred hcCCeeEEEecchhHHHHHHHHHHHhcCCCCCCCCcCCcHHHHHHHHHHhcCCCCCCceeEEEEEEccCCCCCCccHHHH
Confidence 7999999999999999999999999999999999999999999999999999899999999999999999999999999
Q ss_pred ccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q psy2896 318 FAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVA 397 (467)
Q Consensus 318 ~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~~~~~~~~ 397 (467)
++|+||||+|||+||++||||||||+.|+||+|++.+++++|+++++++|++|++|++++++++++||+++++.++++++
T Consensus 314 ~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~~~~~~~h~~~a~~~r~~la~y~e~~~li~i~g~~~lsd~~~~~l~ 393 (461)
T TIGR01039 314 FAHLDATTVLSRKIAELGIYPAVDPLDSTSRLLDPSVVGEEHYDVARGVQQILQRYKELQDIIAILGMDELSEEDKLTVE 393 (461)
T ss_pred HHhcceEEEECHHHHhCCCCCCcCCccccccccCCccCCHHHHHHHHHHHHHHHhhhHHHHHHHHhCCccCCHHHHHHHH
Confidence 99999999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhcCCCCCCchhhhcccCCHHHHHHHHH
Q psy2896 398 RARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAIKKSK 463 (467)
Q Consensus 398 ~~~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~g~~d~~~~~~~~~~~~~~~~~~~~~ 463 (467)
++++|++||+|++|++|+||++++++++++|+++.|.+|++|+||++||++|||+|+++|+++|..
T Consensus 394 ~~~~i~~fL~Q~~~~~~~~t~~~~~~~~~~~~~~~l~~i~~g~~~~~~~~~~~~~g~~~~~~~~~~ 459 (461)
T TIGR01039 394 RARRIQRFLSQPFFVAEVFTGQPGKYVPLKDTIRGFKEILEGKYDHLPEQAFYMVGTIEEVVEKAK 459 (461)
T ss_pred hHHHHHHHhCCCCchhccccCCCCcccCHHHHHHHHHHHhCCCccCCCHHHHhccCcHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999864
No 3
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=100.00 E-value=1.7e-126 Score=996.78 Aligned_cols=463 Identities=65% Similarity=1.036 Sum_probs=441.9
Q ss_pred CceEEEEEcceEEEEecCCCcceeeeeeeeeC-c------eEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCcee
Q psy2896 3 DGKIIQCIGSVVDVEFPHNMVPKIYNALKIEN-S------ELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIM 75 (467)
Q Consensus 3 ~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~~-~------~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~ 75 (467)
.|||++|+|.++++.|+.+.+|.+|++|.+.. + .+.+||++|.+++.++++||++++||+.|+.|..|+++++
T Consensus 16 ~G~V~~v~G~viev~~~~~~iP~ig~~~~i~~~~~~~~~~~~~~EVvg~~~~~~v~~~~l~~~~gi~~G~~V~~tg~~~~ 95 (494)
T CHL00060 16 LGRITQIIGPVLDVAFPPGKMPNIYNALVVKGRDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMEVIDTGAPLS 95 (494)
T ss_pred ceEEEEEEccEEEEEecCCCcCCcCCEEEEccCCCCCccceEEEEEEEEeCCCeEEEEeccCccCCCCCCEEEeCCCcce
Confidence 79999999999999999888988899999942 2 4789999998879999999999999999999999999999
Q ss_pred ecCCCCCcceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCch
Q psy2896 76 IPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKT 155 (467)
Q Consensus 76 vpvg~~lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt 155 (467)
||||++|||||+|++|+|||+++++...+++|++..||++++|.++++||.||||+||+|+|||||||+||||++|+|||
T Consensus 96 vpvg~~lLGRVid~~G~piDg~~~~~~~~~~pi~~~~p~~~~R~~i~e~L~TGIraID~l~pigkGQR~gIfgg~GvGKs 175 (494)
T CHL00060 96 VPVGGATLGRIFNVLGEPVDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKT 175 (494)
T ss_pred eecchhhcCCEEeecCcccCCCCCCCCCccccccCCCcCchhcccccceeecCceeeeccCCcccCCEEeeecCCCCChh
Confidence 99999999999999999999998877777889999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy2896 156 VNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEG 235 (467)
Q Consensus 156 ~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~ 235 (467)
+|+.|+++|+++.++|++||++||||+||++||++++.+.++++.....++|+++|++|+|+||.+|++++|+|+++|||
T Consensus 176 ~L~~~~~~~~~~~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p~~~R~~a~~~A~tiAEy 255 (494)
T CHL00060 176 VLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGLTALTMAEY 255 (494)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999977766799999999999999999999999888775311126799999999999999999999999999999
Q ss_pred HHHCCC-cEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCCCCCceeEEEEEEecCCCCCCCcc
Q psy2896 236 FRDEGK-DVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQAVYVPADDLTDPSP 314 (467)
Q Consensus 236 fr~~g~-~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~~~GSiT~~~tv~~~~~d~~dpi~ 314 (467)
||++|+ |||+++||+||||+|+||||+++||||+++|||||+|+.||+|+||||+..+||||+||||++++||++||||
T Consensus 256 frd~g~~~VLll~DslTR~A~A~REIsl~~gepP~~~GYPpsvfs~l~~LlERaG~~~~GSITai~tVl~~gdD~tdPI~ 335 (494)
T CHL00060 256 FRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAVYVPADDLTDPAP 335 (494)
T ss_pred HHHcCCCCEEEEcccchHHHHHHHHHHHhcCCCCCCCCcCCCHHHHhHHHHHhccCCCCCCeeEEEEEECCCCCCCCcch
Confidence 999976 9999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred cccccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHH
Q psy2896 315 ATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKL 394 (467)
Q Consensus 315 ~~~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~~~~~ 394 (467)
|++++|+||||+|||+||++||||||||+.|+||++.+.+++++|++++.++|++|++|++++++++++||+++++++++
T Consensus 336 d~~~silDGhIvLsr~La~~G~yPAIDvl~SvSR~~~~~~v~~~h~~~a~~~r~~la~y~e~e~li~~~g~~~ls~~~~~ 415 (494)
T CHL00060 336 ATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRL 415 (494)
T ss_pred HhhhhhcceEEEEcHHHHhCCCCCCcCCccchhhhcccccCCHHHHHHHHHHHHHHHHhHHHHHHHHHhCcccCCHHHHH
Confidence 99999999999999999999999999999999999558889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhcCCCCCCchhhhcccCCHHHHHHHHHhh
Q psy2896 395 LVARARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAIKKSKKL 465 (467)
Q Consensus 395 ~~~~~~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~g~~d~~~~~~~~~~~~~~~~~~~~~~~ 465 (467)
+++++++|++||+|++|++|+|||+.++++++++++..|.+|+.|++|++|++.|||+|+++|+.+|..++
T Consensus 416 ~i~~~~~i~~fL~Q~~f~~e~ft~~~~~~~~~~~~~~~l~~i~~g~~~~~~~~~~~~~g~~~~~~~~~~~~ 486 (494)
T CHL00060 416 TVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEATAKAANL 486 (494)
T ss_pred HHHhHHHHHHHhcCCcchhhcccCCCCcccCHHHHHHHHHHHhCCCccCCCHHHhhccCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999997544
No 4
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=100.00 E-value=1.3e-126 Score=998.05 Aligned_cols=457 Identities=61% Similarity=0.958 Sum_probs=440.2
Q ss_pred CCCceEEEEEcceEEEEecCCCcceeeeeeeeeC--ceEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecC
Q psy2896 1 MSDGKIIQCIGSVVDVEFPHNMVPKIYNALKIEN--SELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPV 78 (467)
Q Consensus 1 ~~~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~~--~~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpv 78 (467)
|+.|||++|+|+++++.|+....+.++++|.+.. +...+||+++++++.+.++||+++.||++|+.|..|+++++||+
T Consensus 1 ~~~G~V~~i~g~vi~v~g~~~~~~~ige~~~i~~~~~~~~~eVv~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~v 80 (461)
T PRK12597 1 MMIGRIIKIRGDVVDVEFEEGALPPINQALTVHDDGGPTLLEVKQHLDETTVRAIALGSTSGLARGDEVRNTGGPIEVPV 80 (461)
T ss_pred CCccEEEEEECcEEEEEECCCCCcCccCEEEEecCCCcEEEEEEEEcCCCeEEEEEecCccCCCCCCEEEeCCCceEEEc
Confidence 7899999999999999998633356778888853 45889999997889999999999999999999999999999999
Q ss_pred CCCCcceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhhH
Q psy2896 79 GKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNM 158 (467)
Q Consensus 79 g~~lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L~ 158 (467)
|++|||||+|++|+|||+.+++....+||++.+||+|++|.++++||.||||+||+|+|||||||+||||++|+|||+|+
T Consensus 81 g~~llGRVid~~G~plD~~~~~~~~~~~~i~~~~p~~~~R~~~~e~l~TGir~ID~l~pigkGQR~gIfa~~G~GKt~Ll 160 (461)
T PRK12597 81 GEAVLGRLLDVLGEPLDGGPPLPAEERRPIHSTIPPLAEQDTSTEILETGIKVIDLLCPIAKGGKTGLFGGAGVGKTVLM 160 (461)
T ss_pred ChhhcCCEEeeccccccCCCCCCCcceeeccCCCcChhhcCCcCcceecCCeeecccCccccCCEEEeecCCCCChhHHH
Confidence 99999999999999999998887777899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy2896 159 MELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRD 238 (467)
Q Consensus 159 ~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~ 238 (467)
.|+++|++++++|++||++||||+||++||++++.+.+.++ |+++|++|+|+||.+|++++|+|+++|||||+
T Consensus 161 ~~~~~~~~~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~-------rsvvv~atsd~~~~~R~~a~~~a~tiAEyfrd 233 (461)
T PRK12597 161 MELIFNISKQHSGSSVFAGVGERSREGHELYHEMKESGVLD-------KTVMVYGQMNEPPGARMRVVLTGLTIAEYLRD 233 (461)
T ss_pred HHHHHHHHhhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcc-------eeEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888899999999999999999999998888777 99999999999999999999999999999999
Q ss_pred C-CCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCCCCCceeEEEEEEecCCCCCCCccccc
Q psy2896 239 E-GKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQAVYVPADDLTDPSPATT 317 (467)
Q Consensus 239 ~-g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~~~GSiT~~~tv~~~~~d~~dpi~~~~ 317 (467)
+ |+|||+++||+||||+|+||||+++||||+++|||||+|++|++|+||||+.++||||+||||++|+||++|||||++
T Consensus 234 ~~G~~VLl~~DslTR~A~A~REisl~~gepP~~~GYPpsvfs~l~~l~ERag~~~~GSIT~i~tVl~~~dD~~dPI~d~~ 313 (461)
T PRK12597 234 EEKEDVLLFIDNIFRFVQAGSEVSGLLGRMPSRVGYQPTLASEVAELQERIASTKNGSITSIQAVYVPADDLTDPAAVAI 313 (461)
T ss_pred hcCCceEEEeccchHHHHHHHHHHHhcCCCCCcCCcCchhHHHHHHHHHhhcCCCCccccEEEEEEecCCCCCCccHHHH
Confidence 8 999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred ccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q psy2896 318 FAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVA 397 (467)
Q Consensus 318 ~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~~~~~~~~ 397 (467)
++|+||||+|||+||++||||||||+.|+||+|++.+++++|+++++++|++|++|+++++|++++||++++++++++++
T Consensus 314 ~~ilDG~IvLsr~La~~g~yPAIDvl~S~SR~~~~~i~~~~h~~~a~~~r~~la~y~e~e~li~i~gy~~l~~~~d~~i~ 393 (461)
T PRK12597 314 FSHLDSTVVLSRAQAAKGIYPAIDPLASSSNLLDPLVVGERHYDAAIEVKRILQRYKELEDVIAILGIDELSAEDKIIVK 393 (461)
T ss_pred HhhcceEEEEcHHHHhCCCCCccCCccccccccccccCCHHHHHHHHHHHHHHHhhhhHHHHHHHcCCccCCHHHHHHHH
Confidence 99999999999999999999999999999999988899999999999999999999999999999999889899999999
Q ss_pred HHHHHHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhcCCCCCCchhhhcccCCHHHHHHHHHh
Q psy2896 398 RARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAIKKSKK 464 (467)
Q Consensus 398 ~~~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~g~~d~~~~~~~~~~~~~~~~~~~~~~ 464 (467)
++++|++||+|+++++|+|||.++++++++||++.|++|++|++|++||++|||+|+++|+.+|.+.
T Consensus 394 ~~~~i~~fL~Q~~~~~~~~t~~~~~~~~~~~~~~~l~~i~~g~~~~~~~~~~~~~g~~~~~~~~~~~ 460 (461)
T PRK12597 394 RARQLQRFLTQPFFVTEAFTGEPGVSVPLEETLDSCERILNGEYDDWSEESFYMIGSLDDLRTKEEA 460 (461)
T ss_pred hHHHHHHHhCCCcchhhcccCCCCcccCHHHHHHHHHHHhCCCccCCCHHHHhccCcHHHHHhHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999864
No 5
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=100.00 E-value=3.2e-125 Score=982.57 Aligned_cols=447 Identities=52% Similarity=0.881 Sum_probs=433.8
Q ss_pred ceEEEEEcceEEEEecCCCcceeeeeeeee-CceEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecCCCCC
Q psy2896 4 GKIIQCIGSVVDVEFPHNMVPKIYNALKIE-NSELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKAT 82 (467)
Q Consensus 4 GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~-~~~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpvg~~l 82 (467)
|+|++|+|+++++++++ .+|.|++.+.+. ++++.+||+++++++.++++||++++||+.|+.|..|+++++||||++|
T Consensus 1 G~i~~i~g~vvdv~f~~-~~p~i~~~l~~~~~~~~~~EVv~~l~~~~v~l~~l~~t~Gi~~G~~V~~tg~~~~VpVg~~l 79 (449)
T TIGR03305 1 GHVVAVRGSIVDVRFDG-ELPAIHSVLRAGREGEVVVEVLSQLDAHHVRGIALTPTQGLARGMPVRDSGGPLKAPVGKPT 79 (449)
T ss_pred CeEEEEEcCEEEEEeCC-CCcchhheEEecCCCcEEEeeeeEecCCeEEEEEccCcccCCCCCEEEecCCceEEEcChhh
Confidence 89999999999999964 599999999988 4689999999778899999999999999999999999999999999999
Q ss_pred cceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhhHHHHH
Q psy2896 83 LGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELI 162 (467)
Q Consensus 83 LGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L~~~i~ 162 (467)
||||+|++|+|||+.+++...+++|++++||+|++|.+++++|.||||+||+|+|||||||++|||++|+|||+|+.|++
T Consensus 80 LGRVlD~~G~PiD~~~~~~~~~~~~i~~~ap~~~~R~~i~e~L~TGIr~ID~l~pigkGQr~~Ifg~~G~GKt~l~~~~~ 159 (449)
T TIGR03305 80 LSRMFDVFGNTIDRREPPKDVEWRSVHQAPPTLTRRSSKSEVFETGIKAIDVLVPLERGGKAGLFGGAGVGKTVLLTEMI 159 (449)
T ss_pred cCCEEccCccccCCCCCCCCccccchhcCCCCchhcccCCcccccCceeeccccccccCCEEEeecCCCCChhHHHHHHH
Confidence 99999999999999988777778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHH-CCC
Q psy2896 163 NNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRD-EGK 241 (467)
Q Consensus 163 ~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~-~g~ 241 (467)
+|+++++.+++||++||||++|++||++++.+.++++ |+++|++|+|+||.+|++++++|+++|||||+ +|+
T Consensus 160 ~~~~~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~-------rtvvv~~ts~~~~~~r~~~~~~a~tiAEyfrd~~G~ 232 (449)
T TIGR03305 160 HNMVGQHQGVSIFCGIGERCREGEELYREMKEAGVLD-------NTVMVFGQMNEPPGARFRVGHTALTMAEYFRDDEKQ 232 (449)
T ss_pred HHHHhcCCCEEEEEEeccCcHHHHHHHHHHhhccccc-------eEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9987666799999999999999999999998888887 99999999999999999999999999999999 899
Q ss_pred cEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCCCCCceeEEEEEEecCCCCCCCccccccccc
Q psy2896 242 DVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQAVYVPADDLTDPSPATTFAHL 321 (467)
Q Consensus 242 ~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~~~GSiT~~~tv~~~~~d~~dpi~~~~~~i~ 321 (467)
|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+.++||||+||||++|+||++|||||++++|+
T Consensus 233 ~VLl~~DslTR~A~A~REisl~~ge~P~~~GYP~~vfs~l~~L~ERag~~~~GSIT~i~~V~~~~dD~~dPi~d~~~sil 312 (449)
T TIGR03305 233 DVLLLIDNIFRFIQAGSEVSGLLGQMPSRLGYQPTLGTELAELEERIATTSDGAITSIQAVYVPADDFTDPAAVHTFSHL 312 (449)
T ss_pred ceEEEecChHHHHHHHHHHHHHcCCCCCccCcCchHHHHhHHHHHhhcCCCCcCeeEEEEEEccCCCCCCchhHhhhhhc
Confidence 99999999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred ceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q psy2896 322 DSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVARARK 401 (467)
Q Consensus 322 dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~ 401 (467)
||||||||+||++||||||||+.|+||+|++.+++++|+++++++|++|++|+|++++++++||++++++++++++++++
T Consensus 313 DG~IvLsr~La~~g~yPAIDvl~S~SR~~~~~i~~~~h~~~a~~~~~~l~~y~e~~~li~~~g~~~l~~~~~~~i~~~~~ 392 (449)
T TIGR03305 313 SASLVLSRKRASEGLYPAIDPLQSTSKMATPGIVGERHYDLAREVRQTLAQYEELKDIIAMLGLEQLSREDRRVVNRARR 392 (449)
T ss_pred ceEEEEcHHHHhCCCCCccCCCcchhhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999778889999999999999999999999999999999999998999999999
Q ss_pred HHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhcCCCCCCchhhhcccCCHHHH
Q psy2896 402 MQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEA 458 (467)
Q Consensus 402 i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~g~~d~~~~~~~~~~~~~~~~ 458 (467)
|++||+|+++++|+||+++|++++++||++.+|+|++|+||++|+..|||+|+|+|+
T Consensus 393 i~~fL~Q~~~~~e~~t~~~g~~v~l~~tl~~~~~il~g~~~~~~~~~~~~~g~~~~~ 449 (449)
T TIGR03305 393 LERFLTQPFFTTEQFTGMKGKTVSLEDALDGCERILNDEFQDYPERDLYMIGKIDEA 449 (449)
T ss_pred HHHHhCCCCcccccccCCCCceeEHHHHHHHHHHHhcCCcccCCHHHhhcccCcccC
Confidence 999999999999999999999999999999999999999999999999999999873
No 6
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=100.00 E-value=5.9e-123 Score=938.22 Aligned_cols=411 Identities=33% Similarity=0.507 Sum_probs=389.3
Q ss_pred CceEEEEEcceEEEEecCCCcceeeeeeeee---Cc-eEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecC
Q psy2896 3 DGKIIQCIGSVVDVEFPHNMVPKIYNALKIE---NS-ELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPV 78 (467)
Q Consensus 3 ~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~---~~-~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpv 78 (467)
+|+|++|+|+++++.|+++.++ ++|.|. +. ...+|||+|. ++.+.+|||++..|+.+|++|..+++++++|+
T Consensus 25 ~G~v~~v~G~~lea~g~~~~iG---elc~i~~~~~~~~~~aEVvgf~-~~~~~L~p~~~~~gv~~g~~V~~~~~~~~v~~ 100 (441)
T COG1157 25 RGRLTRVTGLLLEAVGPQARIG---ELCKIERSRGSEKVLAEVVGFN-EERVLLMPFEPVEGVSPGAEVVPTGRPLSVPV 100 (441)
T ss_pred EEEEEEEeeeEEEEecCCCccc---ceEEEEecCCCCceeEEEEEEc-CCeEEEeccCccccCCCCCEEEecCCcccccc
Confidence 6999999999999999986666 555555 22 2399999986 57899999999999999999999999999999
Q ss_pred CCCCcceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhhH
Q psy2896 79 GKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNM 158 (467)
Q Consensus 79 g~~lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L~ 158 (467)
|++|||||+|++|+||||.+......+.|+..+||+|++|.+++++|.||||+||+|+|||+|||+|||++||+|||||+
T Consensus 101 g~~lLGRVld~~G~plDg~~~~~~~~~~~l~~~pp~pm~R~~I~~~l~tGVRaIDgllT~G~GQRiGIFAgsGVGKStLL 180 (441)
T COG1157 101 GDALLGRVLDGLGRPLDGGGLPDGTERRPLDAPPPNPLKRRPIEEPLDTGVRAIDGLLTCGKGQRIGIFAGSGVGKSTLL 180 (441)
T ss_pred ChhhhhhhhccCCCcCcCCCCCCCcccccccCCCCCchhcccccccccccceeeecccccccCceeEEEecCCCcHHHHH
Confidence 99999999999999999988888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy2896 159 MELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRD 238 (467)
Q Consensus 159 ~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~ 238 (467)
.||+++..+ |++|++|||||+|||+||++..... |+++|||+|++|||+||.+|.+++++|++|||||||
T Consensus 181 gMiar~t~a---Dv~ViaLIGERGREVrEFIE~~Lg~-------egl~rsViVvATSD~s~l~R~~aa~~At~IAEyFRD 250 (441)
T COG1157 181 GMIARNTEA---DVNVIALIGERGREVREFIEKDLGE-------EGLKRSVVVVATSDESALMRLKAAFTATTIAEYFRD 250 (441)
T ss_pred HHHhccccC---CEEEEEEeeccchhHHHHHHHhcch-------hhccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999998654 9999999999999999999976332 445599999999999999999999999999999999
Q ss_pred CCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCCCCCceeEEEEEEecCCCCCCCcccccc
Q psy2896 239 EGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQAVYVPADDLTDPSPATTF 318 (467)
Q Consensus 239 ~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~~~GSiT~~~tv~~~~~d~~dpi~~~~~ 318 (467)
||++||++|||+||||+|+|||++++||||+++|||||+|+.||+|+||||++++||||+|||||++|||++|||+|+++
T Consensus 251 qG~~VLL~mDSlTRfA~AqREI~LA~GEpP~~kGYppSVF~~LP~LlERaG~~~~GsITafYTVLveGDD~~dPiaD~~R 330 (441)
T COG1157 251 QGKRVLLIMDSLTRFAMAQREIGLAAGEPPATKGYPPSVFSELPRLLERAGNGDKGSITAFYTVLVEGDDMNDPIADEVR 330 (441)
T ss_pred CCCeEEEEeecHHHHHHHHHHHHHhcCCCCccCCCCchHHHHhHHHHhhcCCCCCCcEEEEEEEEeecCCCCCchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCH-HHHHHHH
Q psy2896 319 AHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSP-EDKLLVA 397 (467)
Q Consensus 319 ~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~-~~~~~~~ 397 (467)
+|+||||||||+||++||||||||++|+||+| +++++++|+++|.++|++|+.|+++++||++++|..++| +.+.+++
T Consensus 331 sILDGHIvLsR~LA~~ghyPaIdvl~SiSRvm-~~i~~~~h~~~a~~~r~lls~y~e~edLi~iGaY~~G~D~~~D~Ai~ 409 (441)
T COG1157 331 SILDGHIVLSRALAEAGHYPAIDVLASISRVM-PQIVSEEHRKAARRLRQLLSRYEENEDLIRIGAYQKGSDPELDKAIK 409 (441)
T ss_pred hhccceEEeeHhHHhcCCCCCcchHHHHHHHh-hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCHHHHHHHH
Confidence 99999999999999999999999999999999 799999999999999999999999999999999999998 7888999
Q ss_pred HHHHHHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhc
Q psy2896 398 RARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISS 438 (467)
Q Consensus 398 ~~~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~ 438 (467)
+.+.|++||+|+.+ +++++++|++.|.+++.
T Consensus 410 ~~p~i~~fL~Q~~~----------e~~~~~~t~~~L~~~~~ 440 (441)
T COG1157 410 LYPKIEQFLKQGID----------EKSSFEETLEQLEAILS 440 (441)
T ss_pred hhHHHHHHHcCCcc----------ccCCHHHHHHHHHHHhc
Confidence 99999999999977 89999999999998875
No 7
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=7.7e-118 Score=884.71 Aligned_cols=460 Identities=72% Similarity=1.129 Sum_probs=450.7
Q ss_pred CCCceEEEEEcceEEEEecC-CCcceeeeeeeeeCc---eEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceee
Q psy2896 1 MSDGKIIQCIGSVVDVEFPH-NMVPKIYNALKIENS---ELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMI 76 (467)
Q Consensus 1 ~~~GrV~~V~G~vi~a~g~~-~~~~~i~~~v~i~~~---~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~v 76 (467)
|+.|+|++|+|++++++++. ..+|+|++.+++... .+..||.++++++.|+.+.++.++||.+|+.|..|++|.+|
T Consensus 1 ~~~G~vvqv~g~VvdV~F~~~~~lP~I~naL~~~~~~~~~~~leV~q~lg~~~VR~Iam~~t~gl~rg~~v~dtg~pi~V 80 (468)
T COG0055 1 MNKGKVVQVIGPVVDVEFPEEDELPEIYNALEVQNGNQGTLVLEVAQHLGDNVVRTIAMGSTDGLVRGLEVIDTGKPISV 80 (468)
T ss_pred CCCceEEEEEeeEEEEEecCcccCchhhhhheeccCCcceEeeehHHHhCCCeEEEEEecCccCcccCcEEecCCCceEE
Confidence 78999999999999999984 579999999999843 48999999999999999999999999999999999999999
Q ss_pred cCCCCCcceEEEeecCcCCCCCCcccc--cccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCc
Q psy2896 77 PVGKATLGRIINVLGDPIDEKGNISNK--YVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGK 154 (467)
Q Consensus 77 pvg~~lLGRVld~lG~PiDg~~~~~~~--~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GK 154 (467)
|||++.||||+|.+|+|||+.+|+... .+||+++++|...+..+..+.|+||||+||.|+|+.||.++|+||++|+||
T Consensus 81 PVG~~~lgri~nvlG~~iD~~~~~~~~~~~~~~Ih~~~p~~~e~~~~~EIleTGIKVIDll~P~~kGgKiGLFGGAGVGK 160 (468)
T COG0055 81 PVGKGTLGRIFNVLGEPIDEKGPIKAEDFEKWPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGK 160 (468)
T ss_pred ecchhhcccchhccCCcccccCCCCccccceeeccCCCCchhhcccchhhhhhCceEEEEecccccCceeeeeccCCccc
Confidence 999999999999999999999998865 899999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy2896 155 TVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAE 234 (467)
Q Consensus 155 t~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE 234 (467)
|+|++++++|.++.|++++||+++|||.||.+|++.+++++++++ ++++|++++|+||++|.+++.+++|+||
T Consensus 161 TVl~~ELI~Nia~~h~g~SVFaGvGERtREGndLy~Em~es~vl~-------ktalv~gQMNEpPGaR~RValtGlT~AE 233 (468)
T COG0055 161 TVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLD-------KTALVFGQMNEPPGARMRVALTGLTMAE 233 (468)
T ss_pred eeeHHHHHHHHHHHcCCeEEEEeccccccchHHHHHHHHhcCCCC-------ceeEEEeecCCCCcceeeehhhhhhHHH
Confidence 999999999999999999999999999999999999999999998 9999999999999999999999999999
Q ss_pred HHHHC-CCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCCCCCceeEEEEEEecCCCCCCCc
Q psy2896 235 GFRDE-GKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQAVYVPADDLTDPS 313 (467)
Q Consensus 235 ~fr~~-g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~~~GSiT~~~tv~~~~~d~~dpi 313 (467)
||||+ |+|||+++||++||.+|.+|+|.++|++|+..||+|.+-++++.|+||...+++||||.+++|++|+||++||.
T Consensus 234 yfRD~~gqdVLlFIDNIfRftQAGsEVSalLGr~PSavGYQpTLatemg~lQERItstk~GSITSiQavyvPaDDlTDPa 313 (468)
T COG0055 234 YFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSITSVQAVYVPADDLTDPA 313 (468)
T ss_pred HhhcccCCeEEEEehhhhHHhhcchHHHHHhccCccccccCchhHHHHHHHHHHHhcCCCCceEEEEEEEeccccCCCcc
Confidence 99998 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHH
Q psy2896 314 PATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDK 393 (467)
Q Consensus 314 ~~~~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~~~~ 393 (467)
|..+++++|.+++|||++|+.|+|||||||.|.||.+++.+++++|+++|.+++++|++|++|||+|+++|+++||++|+
T Consensus 314 pattFaHLDat~vLsR~ia~~GIyPAvDPL~StSr~l~p~ivGe~Hy~va~~vq~iLqrYkeLqDIIaILGmdELseedk 393 (468)
T COG0055 314 PATTFAHLDATTVLSRQIAALGIYPAVDPLDSTSRALDPKIVGEEHYEVAREVQSILQRYKELQDIIAILGMDELSEEDK 393 (468)
T ss_pred hhhhhhhcccceeeeHhHHhcCCCcccCcccccccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhcChhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhcCCCCCCchhhhcccCCHHHHHHHHHhhcC
Q psy2896 394 LLVARARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAIKKSKKLMK 467 (467)
Q Consensus 394 ~~~~~~~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (467)
.+++++++|++||+|||+++|+|||++|.+++++||++.+++|++|+||++||+.|+|+|+|||+++|++++.+
T Consensus 394 ~~V~rArki~~FlSQpF~vAE~FTg~pG~~V~l~dti~~fk~Il~G~yd~~pE~aF~~vGsi~e~~eka~~~~~ 467 (468)
T COG0055 394 LTVARARKIQRFLSQPFFVAEVFTGSPGKYVPLKDTIRGFKRILEGKYDHLPEQAFYMVGSIEEAVEKAKKLGK 467 (468)
T ss_pred HHHHHHHHHHHHhcCcchhhheecCCCceeeeHHHHHHHHHHHhCCCcccCCHHHHhhcCcHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998764
No 8
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=100.00 E-value=3.4e-112 Score=890.79 Aligned_cols=419 Identities=22% Similarity=0.327 Sum_probs=393.9
Q ss_pred CceEEEEEcceEEEEe-cCCCcceeeeeeeeeCceEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecCCCC
Q psy2896 3 DGKIIQCIGSVVDVEF-PHNMVPKIYNALKIENSELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKA 81 (467)
Q Consensus 3 ~GrV~~V~G~vi~a~g-~~~~~~~i~~~v~i~~~~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpvg~~ 81 (467)
+|+|++|.|+++++.| +++. ++++|++. ++..+||+++. ++.+.+++|+++.||+.|+.|.+|+++++||||++
T Consensus 28 ~G~V~~v~g~ii~v~gl~~~~---~gEl~~i~-~~~~g~Vi~l~-~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg~~ 102 (497)
T TIGR03324 28 VGTVESVSTGIARVHGLPGVG---FEELLRFP-GGLLGIAFNVD-EDEVGVVLLGEYSHLQAGDEVERTGRVMDVPVGDG 102 (497)
T ss_pred EEEEEEEeceEEEEEccCCCC---cCCEEEEC-CCcEEEEEEEc-CCeEEEEEecCCcCCcCCCEEEECCCCCeEECCHh
Confidence 6999999999999999 6644 55666675 34889999965 68999999999999999999999999999999999
Q ss_pred CcceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhhH-HH
Q psy2896 82 TLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNM-ME 160 (467)
Q Consensus 82 lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L~-~~ 160 (467)
|||||+|++|+|||+++++....+||++.++|++++|.++++||.||||+||+|+|||||||++|||++|+|||+|+ .+
T Consensus 103 llGRVvd~lG~PiDg~~~~~~~~~~~i~~~~p~~~~R~~v~epl~TGI~aID~l~pigrGQR~~Ifg~~g~GKT~Lal~~ 182 (497)
T TIGR03324 103 LLGRVVDPLGRPLDGGGPLASSPRLPIERPAPPIMDRAPVTVPLQTGLKVIDALIPIGRGQRELILGDRQTGKTAIAIDT 182 (497)
T ss_pred hCcCEECCCCCCcCCCCCCCCCceeehhccCcCccccCCCCchhhcCCEEEeccCCcccCCEEEeecCCCCCHHHHHHHH
Confidence 99999999999999999888778899999999999999999999999999999999999999999999999999995 45
Q ss_pred HHHHHHhhCCCE-EEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHC
Q psy2896 161 LINNIAKAHSGL-SVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDE 239 (467)
Q Consensus 161 i~~~~~~~~~dv-~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~ 239 (467)
|+++ + +.|+ |||++||||++|+.+|++++.+.++++ ||++|++|+|+||.+|++++|+||++||||||+
T Consensus 183 I~~q-~--~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~-------~tvvV~atsd~p~~~r~~ap~~a~aiAEyfrd~ 252 (497)
T TIGR03324 183 ILNQ-K--GRNVLCIYCAIGQRASAVAKVVANLREHGAMD-------YTIVVVTEGNDPPGLQYIAPYAATSIGEHFMEQ 252 (497)
T ss_pred HHHh-c--CCCcEEEEEEeccCcHHHHHHHHHhhhcCCcc-------eeEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 6654 2 3465 999999999999999999999998887 999999999999999999999999999999999
Q ss_pred CCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcC--C--CCCceeEEEEEEecCCCCCCCccc
Q psy2896 240 GKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAS--T--KKGSITSIQAVYVPADDLTDPSPA 315 (467)
Q Consensus 240 g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~--~--~~GSiT~~~tv~~~~~d~~dpi~~ 315 (467)
|+|||++|||+||||+|+||||+++||||+++||||++|+.|++|+||||+ . ++||||+||+|++++||++|||||
T Consensus 253 G~~VLlv~DdlTr~A~A~REisL~lgepPgr~gYPg~vF~~~srLlERag~~~~~~~~GSITal~~V~~~~dD~s~pI~d 332 (497)
T TIGR03324 253 GRDVLIVYDDLTQHARAYRELSLLLRRPPGREAFPGDIFYVHSRLLERSTHLNEELGGGSLTALPIIETEAQNISAYIPT 332 (497)
T ss_pred CCCEEEEEcChhHHHHHHHHHHhhccCCCccCcCCccHHHHhHHHHHhhhhccCCCCCcceeEEEEEEcCCCCCCCcchH
Confidence 999999999999999999999999999999999999999999999999997 3 589999999999999999999999
Q ss_pred ccccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHH
Q psy2896 316 TTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLL 395 (467)
Q Consensus 316 ~~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~~~~~~ 395 (467)
+++||+||||||||+||++||||||||+.|+||+| ..+..++|+++|.++|+.|++|+|++++++++.| ++++++++
T Consensus 333 ~v~sItDGqIvLsr~La~~G~~PAIDv~~SvSRv~-~~~~~~~~~~~a~~lr~~la~y~e~e~~~~~G~~--ld~~~~~~ 409 (497)
T TIGR03324 333 NLISITDGQIYLSPTLFELGVLPAVDVGKSVSRVG-GKAQLAAYRAVAGDLKLAYAQFEELETFARFGAR--LDENTRKT 409 (497)
T ss_pred hheeccceEEEEcHHHHhCCCCCcCCCccccccCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--cCHHHHHH
Confidence 99999999999999999999999999999999999 6777899999999999999999999999887544 88899999
Q ss_pred HHHHHHHHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhcCCCCCCchhhh
Q psy2896 396 VARARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISSGELDNIPEQAF 449 (467)
Q Consensus 396 ~~~~~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~g~~d~~~~~~~ 449 (467)
++++++|++||+|+++ +++++++++..|+++..|++|++|++..
T Consensus 410 i~~~~~i~~fL~Q~~~----------~~~~~~~~~~~l~~~~~g~~d~~~~~~v 453 (497)
T TIGR03324 410 IEHGRRIRACLKQTQS----------SPLTVPQQIAILLALTNGLFDGVDLDAM 453 (497)
T ss_pred HHhHHHHHHHhCCCCC----------CCCCHHHHHHHHHHHhcCCCCCCCHHHH
Confidence 9999999999999987 7899999999999999999999998764
No 9
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=1.3e-110 Score=879.95 Aligned_cols=435 Identities=28% Similarity=0.383 Sum_probs=401.1
Q ss_pred CCCceEEEEEcceEEEEecCCCcceeeeeeeee--Cc-eEEEEEEEEecCcEEEEEEcCCCcCCC-CCceEEecCCceee
Q psy2896 1 MSDGKIIQCIGSVVDVEFPHNMVPKIYNALKIE--NS-ELTLEVQQQLGDGIVRTIVLGTSEGLR-RGTIVKNTGKPIMI 76 (467)
Q Consensus 1 ~~~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~--~~-~~~~EVv~~~~~~~v~l~~l~~~~Gl~-~G~~V~~tg~~~~v 76 (467)
|.+|+|++|.|+++++.|+. -..++++|++. ++ ...+||+++.+ +.+.+++|+++.||+ .|+.|..|+++++|
T Consensus 2 ~~yg~V~~i~g~~v~v~g~~--~~~~ge~~~i~~~~~~~~~geVi~~~~-~~~~l~~~~~t~gl~i~G~~V~~tg~~~~V 78 (460)
T PRK04196 2 KEYRTVSEIKGPLLFVEGVE--GVAYGEIVEIELPNGEKRRGQVLEVSE-DKAVVQVFEGTTGLDLKDTKVRFTGEPLKL 78 (460)
T ss_pred ceeEEEEEEECcEEEEeccC--CCCCCCEEEEEcCCCCEEEEEEEEEeC-CeEEEEEccCCCCCCCCCCEEEeCCCccEE
Confidence 46899999999999999983 23466777775 23 47899999765 789999999999999 89999999999999
Q ss_pred cCCCCCcceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchh
Q psy2896 77 PVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTV 156 (467)
Q Consensus 77 pvg~~lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~ 156 (467)
|||++|||||+|++|+|||+.+++....++|+++.+|+|++|.++++||.||||+||+|+|||||||++|||++|+|||+
T Consensus 79 ~vg~~lLGRVvD~~G~PlD~~~~i~~~~~~~i~~~ap~~l~R~~i~epl~TGi~~ID~l~pig~GQR~gIfgg~G~GKs~ 158 (460)
T PRK04196 79 PVSEDMLGRIFDGLGRPIDGGPEIIPEKRLDINGAPINPVAREYPEEFIQTGISAIDGLNTLVRGQKLPIFSGSGLPHNE 158 (460)
T ss_pred EcCcccccCEECccCCCccCCCCCCCCccCcccCCCCChhhcCCCCccccCCeEEEeccCcccCCCEEEeeCCCCCCccH
Confidence 99999999999999999999988877778899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhC---CCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHH
Q psy2896 157 NMMELINNIAKAH---SGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIA 233 (467)
Q Consensus 157 L~~~i~~~~~~~~---~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~A 233 (467)
|+.||+++...++ +.+|||++||||++|++||++++.+.++++ ||++|++|+|+||.+|++++|+|+++|
T Consensus 159 L~~~ia~~~~~d~~~~~~v~V~~~iGeRgrEv~e~~~~~~~~~~l~-------rtvvV~atsd~p~~~R~~a~~~a~tiA 231 (460)
T PRK04196 159 LAAQIARQAKVLGEEENFAVVFAAMGITFEEANFFMEDFEETGALE-------RSVVFLNLADDPAIERILTPRMALTAA 231 (460)
T ss_pred HHHHHHHhhhhccCCCceEEEEEEeccccHHHHHHHHHHHhcCCcc-------eEEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 9999999865421 238999999999999999999999988887 999999999999999999999999999
Q ss_pred HHHH-HCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCC--CCCceeEEEEEEecCCCCC
Q psy2896 234 EGFR-DEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAST--KKGSITSIQAVYVPADDLT 310 (467)
Q Consensus 234 E~fr-~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~--~~GSiT~~~tv~~~~~d~~ 310 (467)
|||| |+|+|||+++||+||||+|+||||+++||||+++|||||+|+.||+|+||||+. ++||||+||||++++||++
T Consensus 232 Eyfr~d~G~~VLli~DslTR~A~A~REIsl~~gepP~~~gYP~~vf~~l~~LlERaG~~~~~~GSITai~~V~~~gdD~~ 311 (460)
T PRK04196 232 EYLAFEKGMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRIKGKKGSITQIPILTMPDDDIT 311 (460)
T ss_pred HHHHHhcCCcEEEEEcChHHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHHhhcCCCCCeeeEEEEEEEcCCCCCC
Confidence 9999 699999999999999999999999999999999999999999999999999976 6899999999999999999
Q ss_pred CCcccccccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCcccc-----HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy2896 311 DPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVG-----KKHYKIARLVQSTLQRYKELRDIISILGM 385 (467)
Q Consensus 311 dpi~~~~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~-----~~~~~~a~~~r~~la~~~~~~~~i~~~g~ 385 (467)
|||||++++|+||||+|||+||++||||||||+.|+||+| +.+++ ++|++++.+++..|++|++++++.+..|.
T Consensus 312 dpI~d~~~sI~DG~ivLsr~La~~g~~PAIDvl~SvSR~~-~~~~~~~~~~~~~~~~a~~l~~~y~~~~~l~~~~~~~G~ 390 (460)
T PRK04196 312 HPIPDLTGYITEGQIVLSRELHRKGIYPPIDVLPSLSRLM-KDGIGEGKTREDHKDVANQLYAAYARGKDLRELAAIVGE 390 (460)
T ss_pred CchhhhhhhhcceEEEEcHHHHhCCCCCccCCccchhhhc-cccCCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999 56677 99999999999999999999999888788
Q ss_pred CCCCHHHHHHHHHHHHHH-HHhcCCCcccceeccCCCeeecHHHHHHHHHHhhcCCCCCCchhhhcccCCHHHHHHHH
Q psy2896 386 DELSPEDKLLVARARKMQ-RFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAIKKS 462 (467)
Q Consensus 386 ~~~~~~~~~~~~~~~~i~-~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~g~~d~~~~~~~~~~~~~~~~~~~~ 462 (467)
++++|+++..+.++++++ +||+|+++ +++++++++..++++++ .+|+.++.++- .+.++||
T Consensus 391 ~~l~d~~~~~~~~~~~~~~~fL~Q~~~----------~~~~~~~~~~~l~~~l~----~~~~~~l~~~~--~~l~~~~ 452 (460)
T PRK04196 391 EALSERDRKYLKFADAFEREFVNQGFD----------ENRSIEETLDLGWELLS----ILPESELKRIK--DEYIEKY 452 (460)
T ss_pred CcCCHHHHHHHHHHHHHHHHHcCCCCC----------CCcCHHHHHHHHHHHHh----hCCHHHHHHHH--HHHHHHh
Confidence 899999999999999986 89999987 79999999999999986 58888775442 3556655
No 10
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=100.00 E-value=1.6e-110 Score=877.11 Aligned_cols=433 Identities=26% Similarity=0.373 Sum_probs=397.4
Q ss_pred CceEEEEEcceEEEEec-CCCcceeeeeeeee--Cc-eEEEEEEEEecCcEEEEEEcCCCcCCCCCce-EEecCCceeec
Q psy2896 3 DGKIIQCIGSVVDVEFP-HNMVPKIYNALKIE--NS-ELTLEVQQQLGDGIVRTIVLGTSEGLRRGTI-VKNTGKPIMIP 77 (467)
Q Consensus 3 ~GrV~~V~G~vi~a~g~-~~~~~~i~~~v~i~--~~-~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~-V~~tg~~~~vp 77 (467)
+++|++|.|+++++.|+ ++. ++++|++. ++ ...+||+++. ++.+.++||+++.||++|+. |..|+++++||
T Consensus 2 y~~v~~i~g~iv~v~g~~~~~---~ge~~~i~~~~~~~~~geVv~~~-~~~~~l~~~~~t~gi~~g~~~V~~tg~~~~v~ 77 (458)
T TIGR01041 2 YSTITEIAGPLVFVEGVEPVA---YNEIVEIETPDGEKRRGQVLDSS-EGLAVVQVFEGTTGLDPTGTKVRFTGETLKLP 77 (458)
T ss_pred ccEEEEEEccEEEEEccCCCC---cCCEEEEEcCCCcEEEEEEEEEE-CCEEEEEEecCCcCcCCCCcEEEECCCceEEE
Confidence 68999999999999998 543 55667774 23 4789999986 57899999999999999987 99999999999
Q ss_pred CCCCCcceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhh
Q psy2896 78 VGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVN 157 (467)
Q Consensus 78 vg~~lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L 157 (467)
||++|||||+|++|+|||+.+++....+||+++.+|+|++|.++++||.||||+||+|+|||||||++|||++|+|||+|
T Consensus 78 vg~~lLGRViD~~G~plD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~~ID~l~pig~GQR~gIfgg~G~GKs~L 157 (458)
T TIGR01041 78 VSEDMLGRILNGSGEPIDGGPEIVPDERRDINGAPINPYAREYPEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNEL 157 (458)
T ss_pred cChhhccCEEccCCcccCCCCCCCccceeeccCCCCChhhcCCCCCcCCCCeEEEEccCccccCCEEEeeCCCCCCHHHH
Confidence 99999999999999999998888777789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh---CCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy2896 158 MMELINNIAKA---HSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAE 234 (467)
Q Consensus 158 ~~~i~~~~~~~---~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE 234 (467)
+.||+++...+ ++.+|||++||||++|++||++++.+.++++ |||+|++|+|+||.+|++++|+|+|+||
T Consensus 158 ~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~-------rtvvv~atsd~p~~~R~~a~~~a~tiAE 230 (458)
T TIGR01041 158 AAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALE-------RAVVFLNLADDPAVERIVTPRMALTAAE 230 (458)
T ss_pred HHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcc-------eEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 99999976442 1238999999999999999999998888777 9999999999999999999999999999
Q ss_pred HHH-HCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCC--CCCceeEEEEEEecCCCCCC
Q psy2896 235 GFR-DEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAST--KKGSITSIQAVYVPADDLTD 311 (467)
Q Consensus 235 ~fr-~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~--~~GSiT~~~tv~~~~~d~~d 311 (467)
||| ++|+|||+++||+||||+|+||||+++||||+++|||||+|+.||+|+||||+. ++||||+||||++|+||++|
T Consensus 231 yfr~d~G~~VLli~DslTR~A~A~REIsl~~gepP~~~GYP~svfs~l~~LlERaG~~~~~~GSITai~tV~~~gdD~~d 310 (458)
T TIGR01041 231 YLAFEKDMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRVKGKKGSITQMPILTMPGDDITH 310 (458)
T ss_pred HHHHccCCcEEEEEcChhHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHhcccCCCCCcceEEEEEEEcCCCCCCC
Confidence 999 699999999999999999999999999999999999999999999999999976 68999999999999999999
Q ss_pred CcccccccccceEEEeehhhhhcCCCCcccCCCCCcCCcCC----ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy2896 312 PSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDP----LIVGKKHYKIARLVQSTLQRYKELRDIISILGMDE 387 (467)
Q Consensus 312 pi~~~~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~----~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~ 387 (467)
||||++++|+||||+|||+||++||||||||+.|+||+|++ .+++++|++++++++..|+++++++++.+..|.++
T Consensus 311 PI~d~~~sIlDGhivLsr~La~~G~yPAIDvl~SvSR~~~~~ig~~~~~~~~~~~a~~l~~~y~~~~~L~~i~~~~G~d~ 390 (458)
T TIGR01041 311 PIPDLTGYITEGQIVLSRELHRKGIYPPINVLPSLSRLMKDGIGEGKTREDHKDVSDQLYAAYAEGRDLRGLVAIVGEEA 390 (458)
T ss_pred chHHhhhhhcceEEEEcHHHHhCCCCCccCCccchhhcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999999954 26789999999999999999999999888878889
Q ss_pred CCHHHHHHHHHHHHH-HHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhcCCCCCCchhhhcccCCHHHHHHHH
Q psy2896 388 LSPEDKLLVARARKM-QRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAIKKS 462 (467)
Q Consensus 388 ~~~~~~~~~~~~~~i-~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~g~~d~~~~~~~~~~~~~~~~~~~~ 462 (467)
++|+++..+.++++| ++||+|+++ +++++++++..|++++. ++|++++...- .+.++||
T Consensus 391 l~d~~~~~~~~~~~i~~~fL~Q~~~----------~~~~~~~~~~~l~~~l~----~~~~~~~~~~~--~~~~~~~ 450 (458)
T TIGR01041 391 LSERDRKYLKFADLFERRFVRQGRN----------ENRSIEETLDIGWELLS----ILPESELKRID--EEYIEKY 450 (458)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCC----------CCCCHHHHHHHHHHHHh----hCCHHHHHHHH--HHHHHHh
Confidence 999999999999995 799999987 79999999999999986 68888764332 3445554
No 11
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=100.00 E-value=1.5e-110 Score=881.62 Aligned_cols=420 Identities=25% Similarity=0.364 Sum_probs=394.3
Q ss_pred CceEEEEEcceEEEEe-cCCCcceeeeeeeeeCceEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecCCCC
Q psy2896 3 DGKIIQCIGSVVDVEF-PHNMVPKIYNALKIENSELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKA 81 (467)
Q Consensus 3 ~GrV~~V~G~vi~a~g-~~~~~~~i~~~v~i~~~~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpvg~~ 81 (467)
+|+|++|.|+++++.| +++. ++++|++.+ +..+||+++. ++.+.+++|++++||+.|+.|++|+++++||||++
T Consensus 28 ~G~V~~v~g~i~~v~gl~~~~---~ge~~~i~~-~~~g~V~~l~-~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg~~ 102 (502)
T PRK13343 28 IGRVESVGDGIAFVSGLPDAA---LDELLRFEG-GSRGFAFNLE-EELVGAVLLDDTADILAGTEVRRTGRVLEVPVGDG 102 (502)
T ss_pred eeEEEEEeCCEEEEeCCCCCC---CCCEEEECC-CcEEEEEEec-CCeEEEEEeeCCCCCCCCCEeEecCCcceeecCHH
Confidence 6999999999999999 6544 557777753 3889999964 68999999999999999999999999999999999
Q ss_pred CcceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhhHHHH
Q psy2896 82 TLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMEL 161 (467)
Q Consensus 82 lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L~~~i 161 (467)
|||||+|++|+|||+.+++....++|++.++|++++|.++++||.||||+||+|+|||||||++|||++|+|||+|+.++
T Consensus 103 llGRVid~lG~piDg~~~i~~~~~~~i~~~ap~~~~R~~v~epl~TGIkaID~l~pigrGQR~~I~g~~g~GKt~Lal~~ 182 (502)
T PRK13343 103 LLGRVIDPLGRPLDGGGPLQATARRPLERPAPAIIERDFVTEPLQTGIKVVDALIPIGRGQRELIIGDRQTGKTAIAIDA 182 (502)
T ss_pred hcCCEECCCCCcccCCCCCCCCceecccCCCcChhhcCCCCcccccCCceeccccccccCCEEEeeCCCCCCccHHHHHH
Confidence 99999999999999999988888899999999999999999999999999999999999999999999999999995444
Q ss_pred HHHHHhhCCCE-EEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q psy2896 162 INNIAKAHSGL-SVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEG 240 (467)
Q Consensus 162 ~~~~~~~~~dv-~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g 240 (467)
+.|++ +.|+ |||++||||++|+++|++++.+.++++ ||++|++|+|+||.+|++++|+||++||||||+|
T Consensus 183 i~~~~--~~dv~~V~~~IGer~rev~e~~~~l~~~~~l~-------~tvvV~atsd~~~~~r~~ap~~a~aiAEyfrd~G 253 (502)
T PRK13343 183 IINQK--DSDVICVYVAIGQKASAVARVIETLREHGALE-------YTTVVVAEASDPPGLQYLAPFAGCAIAEYFRDQG 253 (502)
T ss_pred HHhhc--CCCEEEEEEEeccChHHHHHHHHHHHhcCccc-------eeEEEEecccccHHHHHHHHHHHHHHHHHHHhCC
Confidence 44443 3466 799999999999999999999998887 9999999999999999999999999999999999
Q ss_pred CcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCC----CCCceeEEEEEEecCCCCCCCcccc
Q psy2896 241 KDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAST----KKGSITSIQAVYVPADDLTDPSPAT 316 (467)
Q Consensus 241 ~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~----~~GSiT~~~tv~~~~~d~~dpi~~~ 316 (467)
+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+. ++||||+||+|++++||++|||||+
T Consensus 254 ~~VLlv~DdlTr~A~A~REisL~l~epPgr~gYP~~vf~~~srLlERAg~~~~~~~gGSITal~~V~~~~dD~s~pI~~~ 333 (502)
T PRK13343 254 QDALIVYDDLSKHAAAYRELSLLLRRPPGREAYPGDIFYLHSRLLERAAKLSPELGGGSLTALPIIETLAGELSAYIPTN 333 (502)
T ss_pred CCEEEEecchHHHHHHHHHHHHhcCCCCCcCCcCcchHhhhHHHHHhhccCCCCCCCcceEEEEEEEcCCCCCCCcchhh
Confidence 999999999999999999999999999999999999999999999999974 6899999999999999999999999
Q ss_pred cccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHH
Q psy2896 317 TFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLV 396 (467)
Q Consensus 317 ~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~~~~~~~ 396 (467)
++||+||||+|||+||++||||||||+.|+||+| ..++.++|++++.++|.+|++|+|+++++++++| +++++++++
T Consensus 334 v~sItDGqIvLsr~La~~G~~PAIDv~~SvSRv~-~~~~~~~~~~~a~~lr~~la~y~e~e~~~~~G~~--ld~~~~~~i 410 (502)
T PRK13343 334 LISITDGQIYLDSDLFAAGQRPAVDVGLSVSRVG-GKAQHPAIRKESGRLRLDYAQFLELEAFTRFGGL--LDAGTQKQI 410 (502)
T ss_pred hhcccceEEEECHHHHhCCCCCccCCccchhccC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCHHHHHHH
Confidence 9999999999999999999999999999999999 5677899999999999999999999999987775 788999999
Q ss_pred HHHHHHHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhcCCCCCCchhhh
Q psy2896 397 ARARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISSGELDNIPEQAF 449 (467)
Q Consensus 397 ~~~~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~g~~d~~~~~~~ 449 (467)
+++++|++||+|+.+ +++++++++..|+++..|++|++|.+..
T Consensus 411 ~~~~~i~~~L~Q~~~----------~~~~~~~~~~~l~~~~~g~~~~~~~~~i 453 (502)
T PRK13343 411 TRGRRLRELLKQPRF----------SPLSVEEQIALLYALNEGLLDAVPLANI 453 (502)
T ss_pred HHHHHHHHHhcCCCC----------CCCCHHHHHHHHHHHhcCCccCCCHHHH
Confidence 999999999999987 7899999999999999999999998764
No 12
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=100.00 E-value=3.4e-110 Score=883.10 Aligned_cols=422 Identities=25% Similarity=0.363 Sum_probs=394.7
Q ss_pred CceEEEEEcceEEEEecCCCcceeeeeeeeeCceEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecCCCCC
Q psy2896 3 DGKIIQCIGSVVDVEFPHNMVPKIYNALKIENSELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKAT 82 (467)
Q Consensus 3 ~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~~~~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpvg~~l 82 (467)
+|+|++|.|++++++|+. -..++++|++. ++..+||+++. ++.+.+++|+++.||+.|+.|.+|+++++||||++|
T Consensus 28 ~G~V~~v~g~~v~v~g~~--~~~~ge~~~i~-~~~~g~Vi~~~-~~~~~~~~~~~~~gi~~g~~V~~~~~~~~v~vg~~l 103 (502)
T PRK09281 28 VGTVISVGDGIARVYGLD--NVMAGELLEFP-GGVYGIALNLE-EDNVGAVILGDYEDIKEGDTVKRTGRILEVPVGEAL 103 (502)
T ss_pred EEEEEEEeCCEEEEECcc--ccccCCEEEEC-CCcEEEEEEEc-CCeEEEEEecCcccccCCCeeeecCCceEEecCHHh
Confidence 699999999999999983 23355777776 33889999965 579999999999999999999999999999999999
Q ss_pred cceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhhHHHHH
Q psy2896 83 LGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELI 162 (467)
Q Consensus 83 LGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L~~~i~ 162 (467)
||||+|++|+|+|+.+++...+++|++.+||++++|.++++||.||||+||+|+|||||||++|||++|+|||+|+.+++
T Consensus 104 lGrv~d~~G~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~~~l~TGi~~ID~l~pigrGQr~~Ifg~~g~GKt~lal~~i 183 (502)
T PRK09281 104 LGRVVNPLGQPIDGKGPIEATETRPVERKAPGVIDRKSVHEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAIAIDTI 183 (502)
T ss_pred cCCEEccCCCCcCCCCCCCCCceecccCCCcCccccCCccceeecCCeeeecccccccCcEEEeecCCCCCchHHHHHHH
Confidence 99999999999999988888888999999999999999999999999999999999999999999999999999955555
Q ss_pred HHHHhhCCCE-EEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q psy2896 163 NNIAKAHSGL-SVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGK 241 (467)
Q Consensus 163 ~~~~~~~~dv-~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g~ 241 (467)
.|++ +.|+ |||++||||++|+++|++++.+.++++ ||++|++|+|+||.+|++++|+|+|+|||||++|+
T Consensus 184 ~~~~--~~dv~~V~~~IGer~~ev~e~~~~~~~~~~l~-------~tvvv~atsd~p~~~r~~a~~~a~tiAEyfrd~G~ 254 (502)
T PRK09281 184 INQK--GKDVICIYVAIGQKASTVAQVVRKLEEHGAME-------YTIVVAATASDPAPLQYLAPYAGCAMGEYFMDNGK 254 (502)
T ss_pred HHhc--CCCeEEEEEEecCChHHHHHHHHHHhhcCCcc-------ceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5543 3466 799999999999999999999998887 99999999999999999999999999999999999
Q ss_pred cEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCC----CCCceeEEEEEEecCCCCCCCccccc
Q psy2896 242 DVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAST----KKGSITSIQAVYVPADDLTDPSPATT 317 (467)
Q Consensus 242 ~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~----~~GSiT~~~tv~~~~~d~~dpi~~~~ 317 (467)
|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+. ++||||+||+|++|+||++|||||++
T Consensus 255 ~VLli~DdlTr~A~A~REisl~~gepPgr~gyP~~vf~~~s~LlERag~~~~~~~~GSITal~~V~~~~dD~s~pI~d~~ 334 (502)
T PRK09281 255 DALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDELGGGSLTALPIIETQAGDVSAYIPTNV 334 (502)
T ss_pred CEEEEecCchHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHHhhhccCCCCCccEEEEEEEECCCCCCCCcchHhh
Confidence 99999999999999999999999999999999999999999999999974 68999999999999999999999999
Q ss_pred ccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q psy2896 318 FAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVA 397 (467)
Q Consensus 318 ~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~~~~~~~~ 397 (467)
+||+||||+|||+||++||||||||+.|+||+| +..+.++|++++.++|++|++|+|+++++++ | ..++++++.+++
T Consensus 335 ~sItDGqIvLsr~La~~G~~PAIdv~~SvSRv~-~~~~~~~~~~~a~~lr~~la~y~e~~~l~~~-g-~~l~~~~~~~l~ 411 (502)
T PRK09281 335 ISITDGQIFLESDLFNAGIRPAINVGISVSRVG-GAAQIKAMKKVAGTLRLDLAQYRELEAFAQF-G-SDLDEATRAQLE 411 (502)
T ss_pred hcccceEEEEcHHHHhCCCCCccCCcccccccC-CccCCHHHHHHHHHHHHHHHHHHHHHHHHHH-h-cCCCHHHHHHHH
Confidence 999999999999999999999999999999999 5666899999999999999999999999886 5 568889999999
Q ss_pred HHHHHHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhcCCCCCCchhhhc
Q psy2896 398 RARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISSGELDNIPEQAFY 450 (467)
Q Consensus 398 ~~~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~g~~d~~~~~~~~ 450 (467)
++++|++||+|+++ ++.++++++..+|++..|++|.+|.+++.
T Consensus 412 ~~~~i~~fL~Q~~~----------~~~~~~~~~~~~~~~~~G~l~~l~~~~i~ 454 (502)
T PRK09281 412 RGQRLVELLKQPQY----------SPLPVEEQVVILYAGTNGYLDDVPVEKVR 454 (502)
T ss_pred HHHHHHHHhCCCCC----------CCCCHHHHHHHHHHHhcCccccCCHHHHH
Confidence 99999999999987 78899999999999999999999988653
No 13
>PRK06936 type III secretion system ATPase; Provisional
Probab=100.00 E-value=2.3e-110 Score=868.94 Aligned_cols=411 Identities=29% Similarity=0.434 Sum_probs=385.0
Q ss_pred CceEEEEEcceEEEEecCCCcceeeeeeeee---Cc-eEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecC
Q psy2896 3 DGKIIQCIGSVVDVEFPHNMVPKIYNALKIE---NS-ELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPV 78 (467)
Q Consensus 3 ~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~---~~-~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpv 78 (467)
+|+|++|.|+++++.++.+.++ +.|++. +. .+.+||++|.+ +.+.+|||++++||++|+.|.+|+++++|||
T Consensus 24 ~G~V~~v~g~~v~~~~~~~~~g---e~~~i~~~~~~~~~~~eVv~~~~-~~~~l~~~~~~~gi~~g~~V~~tg~~~~v~v 99 (439)
T PRK06936 24 RGRVTQVTGTILKAVVPGVRIG---ELCYLRNPDNSLSLQAEVIGFAQ-HQALLTPLGEMYGISSNTEVSPTGTMHQVGV 99 (439)
T ss_pred eeEEEEEECcEEEEEeCCCCCC---CEEEEecCCCCcceEEEEEEEEC-CeEEEEecCCCCCCCCCCEEEeCCCceEEEe
Confidence 6999999999999999875555 666674 22 58999999875 6788999999999999999999999999999
Q ss_pred CCCCcceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhhH
Q psy2896 79 GKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNM 158 (467)
Q Consensus 79 g~~lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L~ 158 (467)
|++|||||+|++|+|||+.+++....++|++++||+|++|.++++|+.|||++||.++|+++|||++|||++|+|||+|+
T Consensus 100 g~~lLGRV~d~~G~plD~~~~~~~~~~~pi~~~~p~p~~R~~i~~~l~TGi~vid~l~~i~~Gq~~~I~G~sG~GKStLl 179 (439)
T PRK06936 100 GEHLLGRVLDGLGQPFDGGHPPEPAAWYPVYADAPAPMSRRLIETPLSLGVRVIDGLLTCGEGQRMGIFAAAGGGKSTLL 179 (439)
T ss_pred CccccCCEECCCCCccCCCCCCCccceeeccCCCCChHHccccCCCCcCCcceeeeeEEecCCCEEEEECCCCCChHHHH
Confidence 99999999999999999998887777889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy2896 159 MELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRD 238 (467)
Q Consensus 159 ~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~ 238 (467)
.+|+++.. .+++||++||||+||++||++.......++ ||++|++|+|+||.+|++++|+|+++||||||
T Consensus 180 ~~Ia~~~~---~dv~V~~liGERgrEv~ef~~~~l~~~~l~-------rtvvv~atsd~p~~~R~~a~~~a~tiAEyfrd 249 (439)
T PRK06936 180 ASLIRSAE---VDVTVLALIGERGREVREFIESDLGEEGLR-------KAVLVVATSDRPSMERAKAGFVATSIAEYFRD 249 (439)
T ss_pred HHHhcCCC---CCEEEEEEEccCcHHHHHHHHHHhcccccc-------eeEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99998743 489999999999999999998753333354 99999999999999999999999999999999
Q ss_pred CCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCCCCCceeEEEEEEecCCCCCCCcccccc
Q psy2896 239 EGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQAVYVPADDLTDPSPATTF 318 (467)
Q Consensus 239 ~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~~~GSiT~~~tv~~~~~d~~dpi~~~~~ 318 (467)
+|+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+.++||||+||||++|+||++|||||+++
T Consensus 250 ~G~~Vll~~DslTR~A~A~REisl~~gepP~~~gyp~svfs~l~~l~ERaG~~~~GSIT~i~tVl~~gdD~~dpI~d~~~ 329 (439)
T PRK06936 250 QGKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSDKGSITALYTVLVEGDDMTEPVADETR 329 (439)
T ss_pred cCCCEEEeccchhHHHHHHHHHHHhcCCCCccccCCccHHHHHHHHHHhhccCCCcceeeeEEEEccCCCCCcchHHHhh
Confidence 99999999999999999999999999999999999999999999999999998999999999999999999999999999
Q ss_pred cccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCH-HHHHHHH
Q psy2896 319 AHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSP-EDKLLVA 397 (467)
Q Consensus 319 ~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~-~~~~~~~ 397 (467)
+|+||||+|||+||++||||||||+.|+||+| +.+++++|+++++++|++|++|+++++++++++|+.+++ +.++++.
T Consensus 330 silDGhIvLsr~La~~g~yPAIDvl~S~SR~~-~~~~~~~~~~~a~~~r~~la~y~e~e~li~iG~y~~g~d~~~d~ai~ 408 (439)
T PRK06936 330 SILDGHIILSRKLAAANHYPAIDVLRSASRVM-NQIVSKEHKTWAGRLRELLAKYEEVELLLQIGEYQKGQDKEADQAIE 408 (439)
T ss_pred hhcceEEEECHHHHhCCCCCccCCcccccccc-hhhCCHHHHHHHHHHHHHHHcchHHHHHHHhcCccCCCCHHHHHHHH
Confidence 99999999999999999999999999999999 688999999999999999999999999999999987765 6778999
Q ss_pred HHHHHHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhc
Q psy2896 398 RARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISS 438 (467)
Q Consensus 398 ~~~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~ 438 (467)
++++|++||+|+++ +.+++++++..|.+++.
T Consensus 409 ~~~~i~~fL~Q~~~----------~~~~~~~~~~~l~~~~~ 439 (439)
T PRK06936 409 RIGAIRGFLRQGTH----------ELSHFNETLNLLETLTQ 439 (439)
T ss_pred hHHHHHHHcCCCCC----------CCCCHHHHHHHHHHHhC
Confidence 99999999999987 78999999999998863
No 14
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=100.00 E-value=7.2e-110 Score=869.85 Aligned_cols=421 Identities=24% Similarity=0.311 Sum_probs=393.6
Q ss_pred CceEEEEEcceEEEEecCCCcceeeeeeeeeCceEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecCCCCC
Q psy2896 3 DGKIIQCIGSVVDVEFPHNMVPKIYNALKIENSELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKAT 82 (467)
Q Consensus 3 ~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~~~~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpvg~~l 82 (467)
.|+|++|.|.+++|+|+. -..++++|++.+ +..+||+++. ++.+.+++|+++.||+.|+.|+.|+++++||+|++|
T Consensus 7 ~G~V~~v~~~ii~v~Gl~--~~~~ge~~~i~~-~~~g~vi~~~-~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg~~l 82 (485)
T CHL00059 7 TGTVLQVGDGIARIYGLD--EVMAGELVEFED-GTIGIALNLE-SNNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAY 82 (485)
T ss_pred eEEEEEEeccEEEEeccc--cCCcCCEEEECC-CCEEEEEEEc-CCEEEEEEeeCCCCCCCCCEEEECCCcceEEcCHhh
Confidence 699999999999999983 233567777753 3789999965 689999999999999999999999999999999999
Q ss_pred cceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhhHHHHH
Q psy2896 83 LGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELI 162 (467)
Q Consensus 83 LGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L~~~i~ 162 (467)
||||+|++|+|||+++++....++|++.++|++++|.++++||.||||+||+|+|||||||++|||++|+|||+|+.+++
T Consensus 83 lGRVvd~lG~piDg~~~~~~~~~~~i~~~ap~~~~R~~v~epl~TGI~aID~l~pigrGQR~~I~g~~g~GKt~Lal~~I 162 (485)
T CHL00059 83 LGRVVNALAKPIDGKGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTI 162 (485)
T ss_pred cCCEECCCCCeeCCCCCcCCCccccccCCCCCchhccCCCcccccCceeeccccccccCCEEEeecCCCCCHHHHHHHHH
Confidence 99999999999999988877778899999999999999999999999999999999999999999999999999955555
Q ss_pred HHHHhhCCC-EEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q psy2896 163 NNIAKAHSG-LSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGK 241 (467)
Q Consensus 163 ~~~~~~~~d-v~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g~ 241 (467)
.|++ + .| +|||++||||++|+++|++++.+.++++ ||++|++|+|+||.+|++++|+||++|||||++|+
T Consensus 163 ~~q~-~-~dv~cV~~~IGer~rev~e~~~~l~~~~~l~-------~tvvV~atad~~~~~r~~ap~~a~aiAEyfr~~G~ 233 (485)
T CHL00059 163 LNQK-G-QNVICVYVAIGQKASSVAQVVTTLQERGAME-------YTIVVAETADSPATLQYLAPYTGAALAEYFMYRGR 233 (485)
T ss_pred Hhcc-c-CCeEEEEEEecCCchHHHHHHHHhhcccchh-------ceEEEEeCCCCCHHHHHHHHHHHhhHHHHHHHcCC
Confidence 5543 2 35 5799999999999999999999999887 99999999999999999999999999999999999
Q ss_pred cEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCC----CCCceeEEEEEEecCCCCCCCccccc
Q psy2896 242 DVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAST----KKGSITSIQAVYVPADDLTDPSPATT 317 (467)
Q Consensus 242 ~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~----~~GSiT~~~tv~~~~~d~~dpi~~~~ 317 (467)
|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+. ++||||+||+|++++||++|||||++
T Consensus 234 ~VLlv~DdlTr~A~A~REisl~l~epPgr~gYP~~vF~~~srLlERag~~~~~~~~GSITal~~V~~~~dD~s~pI~~~v 313 (485)
T CHL00059 234 HTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQAGDVSAYIPTNV 313 (485)
T ss_pred CEEEEEcChhHHHHHHHHHHHhcCCCCCcCCcCchHHHHhHHHHHhhhcccCCCCCcceEEEEEEEccCCCCCCcchHhh
Confidence 99999999999999999999999999999999999999999999999975 58999999999999999999999999
Q ss_pred ccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q psy2896 318 FAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVA 397 (467)
Q Consensus 318 ~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~~~~~~~~ 397 (467)
+||+||||+|||+||++||||||||+.|+||+| +.+++++|+++|.++|..|++|+|+++++++ + ..++++++.+++
T Consensus 314 ~sItDGqIvLsr~La~~G~~PAIDv~~SvSRvg-~~aq~~~~~~~a~~lr~~la~y~e~e~~~~~-~-~~~d~~~~~~i~ 390 (485)
T CHL00059 314 ISITDGQIFLSADLFNAGIRPAINVGISVSRVG-SAAQIKAMKQVAGKLKLELAQFAELEAFAQF-A-SDLDKATQNQLA 390 (485)
T ss_pred hhhcceEEEEcHHHHhCCCCCCcCcccchhcCC-chhhcHHHHHHHHHHHHHHHHHHHHHHHHHh-h-cCCCHHHHHHHH
Confidence 999999999999999999999999999999999 6777899999999999999999999999997 4 467789999999
Q ss_pred HHHHHHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhcCCCCCCchhhh
Q psy2896 398 RARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISSGELDNIPEQAF 449 (467)
Q Consensus 398 ~~~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~g~~d~~~~~~~ 449 (467)
++++|++||+|+.+ +++++++++..++.+..|++|++|.++.
T Consensus 391 ~~~~i~~~L~Q~~~----------~~~~~~e~~~~l~a~~~g~l~~~~~~~v 432 (485)
T CHL00059 391 RGQRLRELLKQSQS----------APLTVEEQVATIYTGTNGYLDSLEIGQV 432 (485)
T ss_pred hHHHHHHHhcCCCC----------CCCCHHHHHHHHHHhccCCcCccCHHHH
Confidence 99999999999977 7899999999999999999999997754
No 15
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=7e-110 Score=863.12 Aligned_cols=413 Identities=30% Similarity=0.445 Sum_probs=390.1
Q ss_pred CceEEEEEcceEEEEecCCCcceeeeeeeee--CceEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecCCC
Q psy2896 3 DGKIIQCIGSVVDVEFPHNMVPKIYNALKIE--NSELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVGK 80 (467)
Q Consensus 3 ~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~--~~~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpvg~ 80 (467)
.|||++|.|++++|.|+.+. +|++|+|+ ++.+.+|||+|. ++.+.++||++++||+.|+.|..|+++++||||+
T Consensus 26 ~G~v~~v~g~~i~~~g~~~~---ige~~~i~~~~~~~~~EVv~~~-~~~~~l~~~~~~~gi~~g~~V~~tg~~~~v~vg~ 101 (444)
T PRK08972 26 SGKLVRVVGLTLEATGCRAP---VGSLCSIETMAGELEAEVVGFD-GDLLYLMPIEELRGVLPGARVTPLGEQSGLPVGM 101 (444)
T ss_pred eeEEEEEEcCEEEEeeCCCC---CCCEEEEecCCCcEEEEEEEec-CCEEEEEECCCcCCCCCCCEEEECCCccEEEcCh
Confidence 69999999999999998744 55777774 346899999986 4789999999999999999999999999999999
Q ss_pred CCcceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhhHHH
Q psy2896 81 ATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMME 160 (467)
Q Consensus 81 ~lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L~~~ 160 (467)
+|||||+|++|+|+|+.+++...++||++.++|+|++|.++++|+.|||++||.++|+++|||++|||++|+|||||+.+
T Consensus 102 ~llGRVid~~G~plD~~~~~~~~~~~~i~~~~~~p~~R~~i~e~l~TGi~aID~ll~i~~GqrigI~G~sG~GKSTLL~~ 181 (444)
T PRK08972 102 SLLGRVIDGVGNPLDGLGPIYTDQRASRHSPPINPLSRRPITEPLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSVLLGM 181 (444)
T ss_pred hhcCCeECCCCCCcCCCCCCCCCccccccCCCCChhhcCCCCCcccccceeecceEEEcCCCEEEEECCCCCChhHHHHH
Confidence 99999999999999999888777789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q psy2896 161 LINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEG 240 (467)
Q Consensus 161 i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g 240 (467)
++++. ..+++||++||||++|++||++++...+.++ |||+|++|+|+||.+|++++|+|+++||||||+|
T Consensus 182 I~~~~---~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~-------rtvvv~atsd~p~~~R~~a~~~A~tiAEyfrd~G 251 (444)
T PRK08972 182 MTRGT---TADVIVVGLVGERGREVKEFIEEILGEEGRA-------RSVVVAAPADTSPLMRLKGCETATTIAEYFRDQG 251 (444)
T ss_pred hccCC---CCCEEEEEEEcCChHHHHHHHHHhhccCCcc-------cEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 98753 3489999999999999999999986665565 9999999999999999999999999999999999
Q ss_pred CcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCC--CCCceeEEEEEEecCCCCCCCcccccc
Q psy2896 241 KDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAST--KKGSITSIQAVYVPADDLTDPSPATTF 318 (467)
Q Consensus 241 ~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~--~~GSiT~~~tv~~~~~d~~dpi~~~~~ 318 (467)
+|||++|||+||||+|+||||+++||||+++||||++|+.||+|+||||+. ++||||+||||++++||++|||||+++
T Consensus 252 ~~VLl~~DslTR~A~A~REIsl~~gepP~~~GYPpsvfs~l~~L~ERAg~~~~~~GSITai~tVl~~gdD~~dpI~d~~~ 331 (444)
T PRK08972 252 LNVLLLMDSLTRYAQAQREIALAVGEPPATKGYPPSVFAKLPALVERAGNGGPGQGSITAFYTVLTEGDDLQDPIADASR 331 (444)
T ss_pred CCEEEEEcChHHHHHHHHHHHHhcCCCCccccCCchHHHHhHHHHHHhcCCCCCCceeeeEEEEEEeCCCCCcchHHhhh
Confidence 999999999999999999999999999999999999999999999999974 479999999999999999999999999
Q ss_pred cccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCH-HHHHHHH
Q psy2896 319 AHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSP-EDKLLVA 397 (467)
Q Consensus 319 ~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~-~~~~~~~ 397 (467)
+|+||||+|||+||++||||||||+.|+||+| +.+++++|+++|.++|++|++|+++++|+++++|..++| +.+++++
T Consensus 332 silDGhIvLsr~La~~g~yPAIDvl~S~SR~~-~~i~~~~h~~~a~~~r~~ls~y~~~e~li~~g~y~~g~d~~~d~ai~ 410 (444)
T PRK08972 332 AILDGHIVLSRELADSGHYPAIDIEASISRVM-PMVISEEHLEAMRRVKQVYSLYQQNRDLISIGAYKQGSDPRIDNAIR 410 (444)
T ss_pred hhcceEEEEcHHHHhCCCCCeeCCccccccCc-hhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCCHHHHHHHH
Confidence 99999999999999999999999999999999 788999999999999999999999999999999998886 7889999
Q ss_pred HHHHHHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhcCC
Q psy2896 398 RARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISSGE 440 (467)
Q Consensus 398 ~~~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~g~ 440 (467)
++++|++||+|+.+ ++++++|++..|.++++.|
T Consensus 411 ~~~~i~~fl~Q~~~----------~~~~~~~~~~~l~~~~~~~ 443 (444)
T PRK08972 411 LQPAMNAFLQQTMK----------EAVPYDMSVNMLKQLAAQC 443 (444)
T ss_pred hhHHHHHHhCCCCC----------CCCCHHHHHHHHHHHHhhc
Confidence 99999999999977 8999999999999998764
No 16
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=100.00 E-value=4.7e-109 Score=874.30 Aligned_cols=419 Identities=26% Similarity=0.374 Sum_probs=391.8
Q ss_pred CceEEEEEcceEEEEecCCCcceeeeeeeeeCceEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecCCCCC
Q psy2896 3 DGKIIQCIGSVVDVEFPHNMVPKIYNALKIENSELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKAT 82 (467)
Q Consensus 3 ~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~~~~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpvg~~l 82 (467)
+|+|++|.|++++++|+. -..++++|++.+ +..+||+++. ++.+.+++|+++.||+.|+.|..|+++++||+|++|
T Consensus 27 ~G~V~~v~g~ii~v~g~~--~~~~ge~~~i~~-~~~g~Vi~~~-~~~~~~~~~~~~~gi~~G~~V~~tg~~~~v~vg~~l 102 (501)
T TIGR00962 27 VGTVVSVGDGIARVYGLE--NVMSGELIEFEG-GVQGIALNLE-EDSVGAVIMGDYSNIREGSTVKRTGRILKVPVGDGL 102 (501)
T ss_pred EEEEEEEeCCEEEEECCc--CCCCCCEEEECC-CeEEEEEEec-CCeEEEEEecCCcCCCCCCeeEecCCccEEecChHh
Confidence 699999999999999983 233567777753 3889999965 678999999999999999999999999999999999
Q ss_pred cceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhhH-HHH
Q psy2896 83 LGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNM-MEL 161 (467)
Q Consensus 83 LGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L~-~~i 161 (467)
||||+|++|+|||+.+++....++|++..+|++++|.++++||.||||+||+|+|||||||++|||++|+|||+|+ .+|
T Consensus 103 lGRV~d~~G~pld~~~~~~~~~~~~i~~~~p~~~~R~~i~~pl~TGi~aID~l~pigrGQr~~I~g~~g~GKt~Lal~~i 182 (501)
T TIGR00962 103 LGRVVNALGQPIDGKGPIDSDEFRPIEKIAPGVMERKSVHEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAVAIDTI 182 (501)
T ss_pred cCCEeCCCCCeeCCCCCcCCCCceeeecCCCChhhcCCcCceeccCCceeeccCCcccCCEEEeecCCCCCccHHHHHHH
Confidence 9999999999999998887777889999999999999999999999999999999999999999999999999995 555
Q ss_pred HHHHHhhCCCE-EEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q psy2896 162 INNIAKAHSGL-SVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEG 240 (467)
Q Consensus 162 ~~~~~~~~~dv-~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g 240 (467)
+++ + +.|+ |||++||||++|++||++++.+.++++ ||++|++|+|+||.+|++++|+|+++||||||+|
T Consensus 183 ~~~-~--~~dv~~V~~~IGer~rev~e~~~~~~~~~~l~-------~tvvV~atsd~p~~~r~~a~~~a~aiAEyfrd~G 252 (501)
T TIGR00962 183 INQ-K--DSDVYCVYVAIGQKASTVAQVVRKLEEHGAMD-------YTIVVAATASDSASLQYLAPYTGCTMAEYFRDNG 252 (501)
T ss_pred Hhh-c--CCCeEEEEEEccCChHHHHHHHHHHHhcCccc-------eeEEEEecCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 544 3 3466 799999999999999999999998887 9999999999999999999999999999999999
Q ss_pred CcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCC----CCCceeEEEEEEecCCCCCCCcccc
Q psy2896 241 KDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAST----KKGSITSIQAVYVPADDLTDPSPAT 316 (467)
Q Consensus 241 ~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~----~~GSiT~~~tv~~~~~d~~dpi~~~ 316 (467)
+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+. ++||||+||+|++++||++|||||+
T Consensus 253 ~~VLlv~Ddltr~A~A~REisl~lgepP~~~gYP~~vf~~~srLlERag~~~~~~g~GSITal~~V~~~~dD~s~pI~~~ 332 (501)
T TIGR00962 253 KHALIIYDDLSKHAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLERAAKLNDEKGGGSLTALPIIETQAGDVSAYIPTN 332 (501)
T ss_pred CCEEEEecchHHHHHHHHHHHHhcCCCCcccCcCchHHHHHHHHHHHHhhccCCCCCcceEEEEEEECCCCCCCCcchHh
Confidence 999999999999999999999999999999999999999999999999973 3799999999999999999999999
Q ss_pred cccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHH
Q psy2896 317 TFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLV 396 (467)
Q Consensus 317 ~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~~~~~~~ 396 (467)
++||+||||+|||+||++||||||||+.|+||+| +.+..++|++++.++|.+|++|+|++++++++ ..++++++.++
T Consensus 333 ~~sItDGqIvLsr~La~~G~~PAIdv~~SvSRv~-~~~~~~~~~~~a~~lr~~la~y~e~~~l~~~g--~~ld~~~~~~l 409 (501)
T TIGR00962 333 VISITDGQIFLESDLFNSGIRPAINVGLSVSRVG-GAAQIKAMKQVAGSLRLELAQYRELEAFSQFA--SDLDEATKAQL 409 (501)
T ss_pred hhhhcceEEEEcHhHHhCCCCCccCCccchhccC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCCHHHHHHH
Confidence 9999999999999999999999999999999999 56678999999999999999999999999975 46888999999
Q ss_pred HHHHHHHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhcCCCCCCchhh
Q psy2896 397 ARARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISSGELDNIPEQA 448 (467)
Q Consensus 397 ~~~~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~g~~d~~~~~~ 448 (467)
+++++|++||+|+.+ +++++++++..+..+..|++|++|.++
T Consensus 410 ~~~~~i~~fL~Q~~~----------~~~~~~~q~~~l~a~~~G~l~~v~~~~ 451 (501)
T TIGR00962 410 ERGKRLVELLKQPQY----------KPLPVEEQVVILYAGTKGYLDDIPVDK 451 (501)
T ss_pred HHHHHHHHHhcCCCC----------CCcCHHHHHHHHHHHhcCCcccccHHH
Confidence 999999999999977 789999999999999999999999776
No 17
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=100.00 E-value=2.6e-108 Score=852.18 Aligned_cols=431 Identities=22% Similarity=0.326 Sum_probs=392.0
Q ss_pred CceEEEEEcceEEEEec-CCCcceeeeeeeee--Cc-eEEEEEEEEecCcEEEEEEcCCCcCCCC-CceEEecCCceeec
Q psy2896 3 DGKIIQCIGSVVDVEFP-HNMVPKIYNALKIE--NS-ELTLEVQQQLGDGIVRTIVLGTSEGLRR-GTIVKNTGKPIMIP 77 (467)
Q Consensus 3 ~GrV~~V~G~vi~a~g~-~~~~~~i~~~v~i~--~~-~~~~EVv~~~~~~~v~l~~l~~~~Gl~~-G~~V~~tg~~~~vp 77 (467)
+++|++|.|+++++.|+ ++.++ ++|++. ++ ...+||++|. ++.+.++||++++||+. |+.|..++++++||
T Consensus 2 y~~v~~i~G~~i~~~g~~~~~~G---e~~~i~~~~~~~~~geVi~~~-~~~~~l~~~~~~~gi~~~g~~V~~t~~~~~v~ 77 (466)
T TIGR01040 2 YRTVSGVNGPLVILDNVKFPRFA---EIVNLTLPDGTVRSGQVLEVS-GNKAVVQVFEGTSGIDAKKTTCEFTGDILRTP 77 (466)
T ss_pred CccceEEEccEEEEECCCCCCcC---CEEEEEeCCCCEEEEEEEEEe-CCeEEEEEcCCCCCcccCCCEEEECCCccEEE
Confidence 67899999999999998 65555 555562 33 4789999976 57899999999999997 99999999999999
Q ss_pred CCCCCcceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhh
Q psy2896 78 VGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVN 157 (467)
Q Consensus 78 vg~~lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L 157 (467)
||++|||||+|++|+|||+.+++....++|++.++|+|++|.++++||.||||+||+|+|||||||+||||++|+|||+|
T Consensus 78 vg~~lLGRVid~~G~piD~~~~~~~~~~~~i~~~~~~~~~R~~i~e~l~TGI~aID~l~~ig~GQRigIfagsGvGKs~L 157 (466)
T TIGR01040 78 VSEDMLGRVFNGSGKPIDKGPPVLAEDYLDINGQPINPYARIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEI 157 (466)
T ss_pred cCcccccCEECccccccCCCCCCCCCceeeccCCCCChhHcCCCCCeeecCcEEEeccCccccCCeeeeecCCCCCHHHH
Confidence 99999999999999999999887767788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhC---CC---------EEEEEEecCCchHHHHHHH-HHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHH
Q psy2896 158 MMELINNIAKAH---SG---------LSVFTGVGERTREGNDFYH-EMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLR 224 (467)
Q Consensus 158 ~~~i~~~~~~~~---~d---------v~V~~liGeR~~ev~e~~~-~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~ 224 (467)
+.||+++....+ .| +|||++|||| +|+.+|+. .+.+.|+++ ||++|++|+|+||.+|++
T Consensus 158 ~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGer-re~~efi~~~l~~~g~l~-------rtvvv~atsd~p~~~R~~ 229 (466)
T TIGR01040 158 AAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVN-METARFFKQDFEENGSME-------RVCLFLNLANDPTIERII 229 (466)
T ss_pred HHHHHHhhccccccccccccccCCceEEEEEEeeee-hHHHHHHHHHHHhcCCcc-------eEEEEEECCCCCHHHHHH
Confidence 999998864100 23 8999999999 88887666 687888787 999999999999999999
Q ss_pred HHHHHHHHHHHHH-HCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCC--CCCceeEEEE
Q psy2896 225 VALTGLTIAEGFR-DEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAST--KKGSITSIQA 301 (467)
Q Consensus 225 ~~~~a~~~AE~fr-~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~--~~GSiT~~~t 301 (467)
++|+|+++||||| ++|+|||+++||+||||+|+||||+++||||+++|||||+|+.||+|+||||+. ++||||+|||
T Consensus 230 a~~~a~tiAEyfr~~~G~~VLl~~DslTr~A~A~REisl~~gepP~~~GYP~svfs~l~~L~ERaG~~~~~~GSITai~t 309 (466)
T TIGR01040 230 TPRLALTTAEYLAYQCEKHVLVILTDMSSYADALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRNGSITQIPI 309 (466)
T ss_pred HHhhhHHHHHHHHHhcCCcEEEeccChHHHHHHHHHHHHhcCCCCCCcCcCchHHHHHHHHhhccccCCCCCcceEEEEE
Confidence 9999999999999 689999999999999999999999999999999999999999999999999985 5899999999
Q ss_pred EEecCCCCCCCcccccccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCcccc-----HHHHHHHHHHHHHHHHHHHH
Q psy2896 302 VYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVG-----KKHYKIARLVQSTLQRYKEL 376 (467)
Q Consensus 302 v~~~~~d~~dpi~~~~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~-----~~~~~~a~~~r~~la~~~~~ 376 (467)
|++++||++|||||++++|+||||||||+||++||||||||+.|+||+| +.+++ ++|+++++++.+.|++++++
T Consensus 310 V~~~~dD~~~pI~d~~~sIlDGhIvLsr~La~~g~yPAIDvl~SvSRl~-~~v~~~~~~~~~h~~~a~~l~~~y~~~~~L 388 (466)
T TIGR01040 310 LTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLM-KSAIGEGMTRKDHSDVSNQLYACYAIGKDV 388 (466)
T ss_pred EECCCCCCCCcchhhhhhhcceEEEECHHHHhCCCCCccCCccchhhcc-ccccccCcCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 56677 89999999977777777777
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHH-HHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhcCCCCCCchhhhcccCCH
Q psy2896 377 RDIISILGMDELSPEDKLLVARARKM-QRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTI 455 (467)
Q Consensus 377 ~~~i~~~g~~~~~~~~~~~~~~~~~i-~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~g~~d~~~~~~~~~~~~~ 455 (467)
.++....|.++++|++...+.+++.| +.||+|+++ +..++++++..-|+++. .+|.+++.++-
T Consensus 389 ~~ig~y~G~d~l~d~a~~~l~~~~~i~~~FL~Q~~~----------~~~~~~~~l~~~w~ll~----~~~~~~~~r~~-- 452 (466)
T TIGR01040 389 QAMKAVVGEEALSSEDLLYLEFLDKFEKNFIAQGPY----------ENRTIFESLDIAWQLLR----IFPKEMLKRIP-- 452 (466)
T ss_pred HHHHHhcCCCcCCHHHHHHHHHHHHHHHHHhccCcC----------CCcCHHHHHHHHHHHHH----hCCHHHhccCC--
Confidence 77777778889999999999999999 689999987 78999999999999988 59999887764
Q ss_pred HHHHHHH
Q psy2896 456 DEAIKKS 462 (467)
Q Consensus 456 ~~~~~~~ 462 (467)
++.+.||
T Consensus 453 ~~~~~~~ 459 (466)
T TIGR01040 453 AKILEEF 459 (466)
T ss_pred HHHHHHh
Confidence 4666776
No 18
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=1.9e-108 Score=855.18 Aligned_cols=414 Identities=29% Similarity=0.450 Sum_probs=386.0
Q ss_pred CceEEEEEcceEEEEecCCCcceeeeeeeee--Cc-eEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecCC
Q psy2896 3 DGKIIQCIGSVVDVEFPHNMVPKIYNALKIE--NS-ELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVG 79 (467)
Q Consensus 3 ~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~--~~-~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpvg 79 (467)
+|+|++|.|+++++.|+... +.++++|++. ++ ...+||++|.+ +.+.++||+++.||+.|+.|..|+++++||||
T Consensus 18 ~g~v~~i~g~~i~v~g~~~~-~~~ge~~~i~~~~~~~~~~eVv~~~~-~~~~l~~~~~~~gi~~g~~V~~tg~~~~v~vg 95 (442)
T PRK08927 18 YGRVVAVRGLLVEVAGPIHA-LSVGARIVVETRGGRPVPCEVVGFRG-DRALLMPFGPLEGVRRGCRAVIANAAAAVRPS 95 (442)
T ss_pred eeEEEEEEccEEEEEecCCC-CCcCCEEEEEcCCCCEEEEEEEEEcC-CeEEEEEccCccCCCCCCEEEeCCCccEEECC
Confidence 69999999999999998311 2466777785 23 58999999876 57999999999999999999999999999999
Q ss_pred CCCcceEEEeecCcCCCCCCcccc-cccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhhH
Q psy2896 80 KATLGRIINVLGDPIDEKGNISNK-YVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNM 158 (467)
Q Consensus 80 ~~lLGRVld~lG~PiDg~~~~~~~-~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L~ 158 (467)
++|||||+|++|+|||+.+++... .++|++..||+|++|.+++++|.||||+||+|+||++|||++|||++|+|||+|+
T Consensus 96 ~~llGRVid~~G~piDg~~~~~~~~~~~~i~~~~p~~~~R~~~~~~l~TGir~ID~l~~i~~Gqri~I~G~sG~GKTtLL 175 (442)
T PRK08927 96 RAWLGRVVNALGEPIDGKGPLPQGPVPYPLRAPPPPAHSRARVGEPLDLGVRALNTFLTCCRGQRMGIFAGSGVGKSVLL 175 (442)
T ss_pred hhhCCCEEccCCCCccCCCCCCCCcccccccCCCcChHHcCCcccccccceEEEeeeeEEcCCCEEEEECCCCCCHHHHH
Confidence 999999999999999999887654 5789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy2896 159 MELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRD 238 (467)
Q Consensus 159 ~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~ 238 (467)
.+|+++.. .+++||++||||+||++||+++..+...++ |+|+|++|+|+||.+|++++++|+++|||||+
T Consensus 176 ~~I~~~~~---~d~~v~~~iGER~rEv~ef~~~~l~~~~l~-------rsvvv~atsd~~~~~r~~a~~~a~tiAEyfrd 245 (442)
T PRK08927 176 SMLARNAD---ADVSVIGLIGERGREVQEFLQDDLGPEGLA-------RSVVVVATSDEPALMRRQAAYLTLAIAEYFRD 245 (442)
T ss_pred HHHHhccC---CCEEEEEEEecCcHHHHHHHHHHhhccCce-------eEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99987643 478899999999999999997653332354 99999999999999999999999999999999
Q ss_pred CCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCC--CCCceeEEEEEEecCCCCCCCcccc
Q psy2896 239 EGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAST--KKGSITSIQAVYVPADDLTDPSPAT 316 (467)
Q Consensus 239 ~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~--~~GSiT~~~tv~~~~~d~~dpi~~~ 316 (467)
+|+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+. ++||||+||||++|+||++|||||+
T Consensus 246 ~G~~Vll~~DslTr~A~A~REisl~~ge~P~~~Gyp~~~f~~l~~l~ERaG~~~~~~GSIT~i~tVlv~gdD~~dpi~d~ 325 (442)
T PRK08927 246 QGKDVLCLMDSVTRFAMAQREIGLSAGEPPTTKGYTPTVFAELPRLLERAGPGPIGEGTITGLFTVLVDGDDHNEPVADA 325 (442)
T ss_pred CCCcEEEEEeCcHHHHhhhhHHHHhcCCCCcccCCCcchHHHhhHHHHHhcCCCCCCeeeeeeeeeEccCCCCCCchhhh
Confidence 99999999999999999999999999999999999999999999999999984 5899999999999999999999999
Q ss_pred cccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCH-HHHHH
Q psy2896 317 TFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSP-EDKLL 395 (467)
Q Consensus 317 ~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~-~~~~~ 395 (467)
+++|+||||+|||+||++||||||||+.|+||+| +.+++++|++++.++|++|++|+++++++++++|+.+++ +.+++
T Consensus 326 ~~~i~Dg~ivLsr~La~~g~~PAIDvl~S~SR~~-~~~~~~~~~~~a~~~r~~l~~y~e~edli~lg~y~~g~d~~~d~a 404 (442)
T PRK08927 326 VRGILDGHIVMERAIAERGRYPAINVLKSVSRTM-PGCNDPEENPLVRRARQLMATYADMEELIRLGAYRAGSDPEVDEA 404 (442)
T ss_pred hhccccEEEEEcHHHHhCCCCCccCCcccccccc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcCCCCHHHHHH
Confidence 9999999999999999999999999999999999 788999999999999999999999999999999988886 66789
Q ss_pred HHHHHHHHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhcC
Q psy2896 396 VARARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISSG 439 (467)
Q Consensus 396 ~~~~~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~g 439 (467)
++++++|++||+|+.+ ++++++++++.|++++.|
T Consensus 405 i~~~~~i~~fL~Q~~~----------e~~~~~~~~~~l~~l~~~ 438 (442)
T PRK08927 405 IRLNPALEAFLRQGKD----------EATSLAEGYARLAQILGG 438 (442)
T ss_pred HHccHHHHHhcCCCCC----------CCCCHHHHHHHHHHHhcc
Confidence 9999999999999976 799999999999999987
No 19
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=3.1e-107 Score=842.82 Aligned_cols=417 Identities=23% Similarity=0.302 Sum_probs=388.7
Q ss_pred CceEEEEEcceEEEEecCCCcceeeeeeeee--CceEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecCCC
Q psy2896 3 DGKIIQCIGSVVDVEFPHNMVPKIYNALKIE--NSELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVGK 80 (467)
Q Consensus 3 ~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~--~~~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpvg~ 80 (467)
+|+|++|+|+++++.+++ +.++++|++. ++...+||+++ +++.+.+++|++++||++|+.|.+|+++++||||+
T Consensus 5 ~g~v~~i~G~~v~v~~~~---~~~ge~~~i~~~~~~~~geVi~~-~~~~v~~~~~~~t~Gl~~g~~V~~tg~~~~vpvg~ 80 (436)
T PRK02118 5 YTKITDITGNVITVEAEG---VGYGELATVERKDGSSLAQVIRL-DGDKVTLQVFGGTRGISTGDEVVFLGRPMQVTYSE 80 (436)
T ss_pred eEEEEEEECcEEEEEeCC---CCCCCEEEEEcCCCCEEEEEEEE-cCCEEEEEEecCCcCCCCCCEEEeCCCceEEEcCc
Confidence 699999999999999976 4466777775 34688999986 56899999999999999999999999999999999
Q ss_pred CCcceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhhHHH
Q psy2896 81 ATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMME 160 (467)
Q Consensus 81 ~lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L~~~ 160 (467)
+|||||+|++|+|+|+.+++.. +.+|++++||+|++|.+++++|+||||+||+|+||+||||+||||++|+|||+|+.+
T Consensus 81 ~lLGRV~d~~G~PiD~~~~~~~-~~~~i~~~~~~p~~R~~~~e~l~TGIkaID~l~pl~rGQkigIF~gaGvgk~~L~~~ 159 (436)
T PRK02118 81 SLLGRRFNGSGKPIDGGPELEG-EPIEIGGPSVNPVKRIVPREMIRTGIPMIDVFNTLVESQKIPIFSVSGEPYNALLAR 159 (436)
T ss_pred cccCCEEccCCcccCCCCCCCc-ceeecCCCCCChHHcCCcccccccCcEEeecccccccCCEEEEEeCCCCCHHHHHHH
Confidence 9999999999999999877644 458999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q psy2896 161 LINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEG 240 (467)
Q Consensus 161 i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g 240 (467)
|+++.. .+++||++||||.||+.||++++.+.++++ |+++|++|+|+||.+|++++++|+|+||||||+|
T Consensus 160 ia~~~~---~~v~Vfa~iGeR~rE~~ef~~~~~~~~~l~-------rtvlv~~~adep~~~R~~~~~~AltiAEyfrd~g 229 (436)
T PRK02118 160 IALQAE---ADIIILGGMGLTFDDYLFFKDTFENAGALD-------RTVMFIHTASDPPVECLLVPDMALAVAEKFALEG 229 (436)
T ss_pred HHHhhC---CCeEEEEEeccchhHHHHHHHHHhhCCCcc-------eEEEEEECCCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 988643 389999999999999999999999999988 9999999999999999999999999999999997
Q ss_pred -CcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcC-CCCCceeEEEEEEecCCCCCCCcccccc
Q psy2896 241 -KDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAS-TKKGSITSIQAVYVPADDLTDPSPATTF 318 (467)
Q Consensus 241 -~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~-~~~GSiT~~~tv~~~~~d~~dpi~~~~~ 318 (467)
+|||+++||+||||+|+||||+++||||+++||||++|++|++|+||||+ .++||||+||+|++|+||++|||||+++
T Consensus 230 ~~~VLli~DdlTr~a~A~REIsl~~ge~P~r~GYpp~lfs~L~~l~ERag~~~~~GSITai~~V~~p~DD~tdPi~d~~~ 309 (436)
T PRK02118 230 KKKVLVLLTDMTNFADALKEISITMDQIPSNRGYPGSLYSDLASRYEKAVDFEDGGSITIIAVTTMPGDDVTHPVPDNTG 309 (436)
T ss_pred CCCEEEeccCchHHHHHHHHHHHhcCCCCCCCCcCCcHHHHHHHHHHhcCCCCCCeeEEEEEEEEcCCCCcCccHHHHHH
Confidence 99999999999999999999999999999999999999999999999998 4689999999999999999999999999
Q ss_pred cccceEEEeehhhhhcCCCCcccCCCCCcCCcCCcccc----HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHH
Q psy2896 319 AHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVG----KKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKL 394 (467)
Q Consensus 319 ~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~----~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~~~~~ 394 (467)
+|+||||||||+| |||+.|+||+| +.+++ ++|+++|+++|++|++|+++++|+++ |+ ++|++|++
T Consensus 310 silDGqIvLsR~l--------ID~l~S~SRl~-~~v~g~~t~~~h~~~a~~l~~~~a~y~e~~dli~i-G~-eLs~~d~~ 378 (436)
T PRK02118 310 YITEGQFYLRRGR--------IDPFGSLSRLK-QLVIGKKTREDHGDLMNAMIRLYADSREAKEKMAM-GF-KLSNWDEK 378 (436)
T ss_pred HhcCcEEEecccc--------ccCcccccccc-ccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHh-hh-hcCHHHHH
Confidence 9999999999999 99999999999 78888 79999999999999999999999996 76 89999999
Q ss_pred HHHHHHHHHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhcCCCCCCchhhhcccCCHHHHHHHH
Q psy2896 395 LVARARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAIKKS 462 (467)
Q Consensus 395 ~~~~~~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~g~~d~~~~~~~~~~~~~~~~~~~~ 462 (467)
.+++++++++||-|. |++++++||++.+|+|++. +|..++..+. ++.++||
T Consensus 379 ~l~~~~~~e~~~~~~-----------g~~~~~~etl~~~~~~l~~----~~~~~~~~~~--~~~~~~~ 429 (436)
T PRK02118 379 LLKFSELFESRLMDL-----------EVNIPLEEALDLGWKILAQ----CFHPEEVGIK--EQLIDKY 429 (436)
T ss_pred HHHHHHHHHHHhhcC-----------CCcccHHHHHHHHHHHHHH----CCHHHHhcCC--HHHHHHh
Confidence 999999999877442 5789999999999999997 7888876554 4777777
No 20
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=1.6e-106 Score=842.63 Aligned_cols=411 Identities=28% Similarity=0.436 Sum_probs=388.1
Q ss_pred CceEEEEEcceEEEEecCCCcceeeeeeeee--Cc----eEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceee
Q psy2896 3 DGKIIQCIGSVVDVEFPHNMVPKIYNALKIE--NS----ELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMI 76 (467)
Q Consensus 3 ~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~--~~----~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~v 76 (467)
+|+|++|.|++++|.|+.+.++ ++|.|. ++ ...+||++| +++.+.++||+++.||++|+.|+.|+++++|
T Consensus 28 ~g~v~~v~g~~~~~~g~~~~~g---e~c~i~~~~~~~~~~~~~eVv~~-~~~~~~l~~~~~~~gi~~g~~V~~tg~~~~v 103 (451)
T PRK05688 28 EGRLLRMVGLTLEAEGLRAAVG---SRCLVINDDSYHPVQVEAEVMGF-SGDKVFLMPVGSVAGIAPGARVVPLADTGRL 103 (451)
T ss_pred eeEEEEEEecEEEEecCCCCCC---CEEEEecCCCccccceEEEEEEE-cCCEEEEEEccCccCCCCCCEEEECCCccEE
Confidence 6999999999999999975554 666674 22 489999997 5689999999999999999999999999999
Q ss_pred cCCCCCcceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchh
Q psy2896 77 PVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTV 156 (467)
Q Consensus 77 pvg~~lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~ 156 (467)
|||++|||||+|++|+|||+++++...+++|++.+||+|++|.++++|+.|||++||.|+|+++|||++|||++|+|||+
T Consensus 104 ~vg~~llGRV~d~~G~plD~~~~~~~~~~~~i~~~~~~p~~R~~i~~~l~TGi~aID~l~~I~~GqrigI~G~sG~GKST 183 (451)
T PRK05688 104 PMGMSMLGRVLDGAGRALDGKGPMKAEDWVPMDGPTINPLNRHPISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSV 183 (451)
T ss_pred EecccccCCEEeccCceecCCCCCCccceecccCCCCCHHHcccccCCcccceeeecceEEecCCcEEEEECCCCCCHHH
Confidence 99999999999999999999988777777899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q psy2896 157 NMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGF 236 (467)
Q Consensus 157 L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~f 236 (467)
|+.++++.. ..+++|+++||+|++|+++|++.+.+.+.++ |+|+|++|+|+||.+|++++++|+++||||
T Consensus 184 Ll~~I~g~~---~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~-------rsvvv~atsd~~p~~r~~a~~~a~aiAEyf 253 (451)
T PRK05688 184 LLGMMTRFT---EADIIVVGLIGERGREVKEFIEHILGEEGLK-------RSVVVASPADDAPLMRLRAAMYCTRIAEYF 253 (451)
T ss_pred HHHHHhCCC---CCCEEEEEEeCcCcHhHHHHHHHHhhcCCcc-------EEEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 999887642 3578899999999999999999998877776 999999999999999999999999999999
Q ss_pred HHCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCCC--CCceeEEEEEEecCCCCCCCcc
Q psy2896 237 RDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTK--KGSITSIQAVYVPADDLTDPSP 314 (467)
Q Consensus 237 r~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~~--~GSiT~~~tv~~~~~d~~dpi~ 314 (467)
||+|+|||+++||+||||+|+||||+++||||+++|||||+|+.|++|+||||+.+ +||||+||||++++||++||||
T Consensus 254 rd~G~~VLl~~DslTR~A~A~REisl~~gepP~~~GYp~svfs~l~~l~ERag~~~~~~GSITai~tVl~~gdD~~dpI~ 333 (451)
T PRK05688 254 RDKGKNVLLLMDSLTRFAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAEPGGGSITAFYTVLSEGDDQQDPIA 333 (451)
T ss_pred HHCCCCEEEEecchhHHHHHHHHHHHhcCCCCcccCCCchHHHHhHHHHHHhcCCCCCCceeeEEEEEEecCCCCCCchH
Confidence 99999999999999999999999999999999999999999999999999999864 8999999999999999999999
Q ss_pred cccccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCH-HHH
Q psy2896 315 ATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSP-EDK 393 (467)
Q Consensus 315 ~~~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~-~~~ 393 (467)
|++++|+||||+|||+||++||||||||+.|+||+| +.+++++|++++.++|++|++|+++++++++++|..++| +++
T Consensus 334 d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~-~~~~~~~~~~~a~~~r~~la~y~~~~dli~~g~y~~g~d~~~d 412 (451)
T PRK05688 334 DSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVM-PQVVDPEHLRRAQRFKQLWSRYQQSRDLISVGAYVAGGDPETD 412 (451)
T ss_pred HHHHhhccEEEEEcHHHHhCCCCCccCCccccCccc-hhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCCHHHH
Confidence 999999999999999999999999999999999999 788999999999999999999999999999999986765 788
Q ss_pred HHHHHHHHHHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhc
Q psy2896 394 LLVARARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISS 438 (467)
Q Consensus 394 ~~~~~~~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~ 438 (467)
++++++++|++||+|+.+ ++.+++++++.|.+++.
T Consensus 413 ~ai~~~~~i~~fL~Q~~~----------e~~~~~~~~~~l~~~~~ 447 (451)
T PRK05688 413 LAIARFPHLVQFLRQGLR----------ENVSLAQSREQLAAIFA 447 (451)
T ss_pred HHHHhhHHHHHHhCCCCC----------CCCCHHHHHHHHHHHhc
Confidence 999999999999999987 79999999999999975
No 21
>PRK09099 type III secretion system ATPase; Provisional
Probab=100.00 E-value=4.7e-106 Score=839.90 Aligned_cols=411 Identities=28% Similarity=0.441 Sum_probs=387.4
Q ss_pred CceEEEEEcceEEEEecCCCcceeeeeeeee---Cce-EEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecC
Q psy2896 3 DGKIIQCIGSVVDVEFPHNMVPKIYNALKIE---NSE-LTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPV 78 (467)
Q Consensus 3 ~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~---~~~-~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpv 78 (467)
+|+|++|.|+++++.|+.+. +|++|++. +.. ..+||++|.+ +.+.++||++++||+.|++|..|+++++||+
T Consensus 25 ~G~V~~v~g~~i~~~g~~~~---~ge~~~i~~~~g~~~~~~eVv~~~~-~~~~l~~~~~t~gi~~g~~V~~tg~~~~v~v 100 (441)
T PRK09099 25 TGKVVEVIGTLLRVSGLDVT---LGELCELRQRDGTLLQRAEVVGFSR-DVALLSPFGELGGLSRGTRVIGLGRPLSVPV 100 (441)
T ss_pred eeEEEEEECCEEEEeccCCC---CCCEEEEecCCCCeeeEEEEEEEEC-CEEEEEEccCCcCCCCCCEEEeCCCccEEEe
Confidence 69999999999999998744 55666673 332 7899999865 7899999999999999999999999999999
Q ss_pred CCCCcceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhhH
Q psy2896 79 GKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNM 158 (467)
Q Consensus 79 g~~lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L~ 158 (467)
|++|||||+|++|+|||+.+++...+++|++..||+|++|.++++||.||+++||.++|+++||+++|||++|+|||+|+
T Consensus 101 g~~lLGrV~d~~G~piD~~~~~~~~~~~~i~~~~p~p~~R~~i~e~l~TGi~~ID~l~~i~~Gq~~~I~G~sG~GKTtLl 180 (441)
T PRK09099 101 GPALLGRVIDGLGEPIDGGGPLDCDELVPVIAAPPDPMSRRMVEAPLPTGVRIVDGLMTLGEGQRMGIFAPAGVGKSTLM 180 (441)
T ss_pred ccccccCEEcccCCccCCCCCCccccccccccCCCChhhcCCcccccCCCceeccceeeecCCCEEEEECCCCCCHHHHH
Confidence 99999999999999999998877777889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy2896 159 MELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRD 238 (467)
Q Consensus 159 ~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~ 238 (467)
.+++++.. .++++|++||||++|+++|++.+.+.+.++ |+++|++|+|+||.+|++++|+|+++|||||+
T Consensus 181 ~~ia~~~~---~d~~vi~~iGer~~ev~ef~~~~~~~~~l~-------rtvvv~~tsd~p~~~r~~a~~~a~tiAEyfrd 250 (441)
T PRK09099 181 GMFARGTQ---CDVNVIALIGERGREVREFIELILGEDGMA-------RSVVVCATSDRSSIERAKAAYVATAIAEYFRD 250 (441)
T ss_pred HHHhCCCC---CCeEEEEEEccChHHHHHHHHHHhhcCCcc-------eEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99987643 478999999999999999999997766665 99999999999999999999999999999999
Q ss_pred CCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCCCCCceeEEEEEEecCCCCCCCcccccc
Q psy2896 239 EGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQAVYVPADDLTDPSPATTF 318 (467)
Q Consensus 239 ~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~~~GSiT~~~tv~~~~~d~~dpi~~~~~ 318 (467)
+|+|||+++||+||||+|+||||+++||||+++||||++|+.||+|+||||..++||||+||||++++||++|||||+++
T Consensus 251 ~G~~VLl~~DslTr~A~A~REisl~~gepP~~~gyP~~vf~~l~~l~ERag~~~~GSIT~i~tVl~~~dd~~dpI~d~~~ 330 (441)
T PRK09099 251 RGLRVLLMMDSLTRFARAQREIGLAAGEPPARRGFPPSVFAELPRLLERAGMGETGSITALYTVLAEDESGSDPIAEEVR 330 (441)
T ss_pred cCCCEEEeccchhHHHHHHHHHHHhcCCCCccccCCccHHHHhHHHHHhhcCCCCcchheeEEEEecCCCcCCcchhhhh
Confidence 99999999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred cccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCH-HHHHHHH
Q psy2896 319 AHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSP-EDKLLVA 397 (467)
Q Consensus 319 ~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~-~~~~~~~ 397 (467)
+|+||||+|||+||++||||||||+.|+||+| +.+++++|+++++++|++|++|+++++++++++|+.++| ..+++++
T Consensus 331 ~i~DG~ivLsr~La~~g~yPAIDvl~S~SR~~-~~~~~~~~~~~a~~lr~~la~y~e~e~li~iG~y~~g~d~~~d~~i~ 409 (441)
T PRK09099 331 GILDGHMILSREIAARNQYPAIDVLGSLSRVM-PQVVPREHVQAAGRLRQLLAKHREVETLLQVGEYRAGSDPVADEAIA 409 (441)
T ss_pred eecceEEEEcHHHHhCCCCCccCCccccCccc-hhcCCHHHHHHHHHHHHHHHhhHHHHHHHHhcCccCCCChhHHHHHH
Confidence 99999999999999999999999999999999 788899999999999999999999999999999988876 6778999
Q ss_pred HHHHHHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhc
Q psy2896 398 RARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISS 438 (467)
Q Consensus 398 ~~~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~ 438 (467)
++++|++||+|+.+ +++++++|+..|.+++.
T Consensus 410 ~~~~i~~fL~Q~~~----------~~~~~~~t~~~l~~~~~ 440 (441)
T PRK09099 410 KIDAIRDFLSQRTD----------EYSDPDATLAALAELSG 440 (441)
T ss_pred HHHHHHHHhCCCCC----------CCCCHHHHHHHHHHHhc
Confidence 99999999999976 79999999999999864
No 22
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=100.00 E-value=6.1e-106 Score=842.89 Aligned_cols=416 Identities=19% Similarity=0.234 Sum_probs=385.4
Q ss_pred ceEEEEEcceEEEEecCCCcceeeeeeeee-CceEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecCCCCC
Q psy2896 4 GKIIQCIGSVVDVEFPHNMVPKIYNALKIE-NSELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKAT 82 (467)
Q Consensus 4 GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~-~~~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpvg~~l 82 (467)
=+|++|.|.++++.|+. -..++++|++. ++...++|+++. ++.+.+++|+++.||+.|+.|++|+++++||||++|
T Consensus 3 ~~V~~v~~~i~~v~Gl~--~~~~ge~~~~~~~~~~~g~V~~~~-~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg~~l 79 (507)
T PRK07165 3 PKIKSIFDYIVEVKGEY--DYQQNQFFTLKNNPNVKAFVISAT-EDKAYLLINNEKGKIKINDELIELNNTNKVKTSKEY 79 (507)
T ss_pred CEEEEEeceEEEEEccc--CCCcCCEEEECCCCeEEEEEEEEe-CCeEEEEEccCccCCCCCCEEEECCCccEEECCccc
Confidence 37999999999999983 23356777786 345899999975 578999999999999999999999999999999999
Q ss_pred cceEEEeecCcCCCCCCccc-----ccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhh
Q psy2896 83 LGRIINVLGDPIDEKGNISN-----KYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVN 157 (467)
Q Consensus 83 LGRVld~lG~PiDg~~~~~~-----~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L 157 (467)
||||+|++|+|||+++++.. ...+|++.+||++++|.++++||+||||+||+|+|||||||++|||++|+|||+|
T Consensus 80 LGRVvd~lG~piDg~g~i~~~~~~~~~~~~i~~~ap~~~~R~~v~epL~TGIkaID~l~pigrGQR~~Ifg~~gtGKT~l 159 (507)
T PRK07165 80 FGKIIDIDGNIIYPEAQNPLSKKFLPNTSSIFNLAHGLMTVKTLNEQLYTGIIAIDLLIPIGKGQRELIIGDRQTGKTHI 159 (507)
T ss_pred cCCEECCCCcccCCCCCCCcccccccccccccCCCCCchhhCCCCceeecCchhhhhcCCcccCCEEEeecCCCCCccHH
Confidence 99999999999999987665 4567999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCE-EEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q psy2896 158 MMELINNIAKAHSGL-SVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGF 236 (467)
Q Consensus 158 ~~~i~~~~~~~~~dv-~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~f 236 (467)
+.+++.|++ ..|+ |||++||||++|+++|++++.+.++++ ||++|++|+| ||.+|+++||+|||+||||
T Consensus 160 al~~I~~q~--~~dv~~V~~~IGer~~ev~~~~~~l~~~gal~-------~tvvV~atsd-~~~~r~~ap~~a~tiAEyf 229 (507)
T PRK07165 160 ALNTIINQK--NTNVKCIYVAIGQKRENLSRIYETLKEHDALK-------NTIIIDAPST-SPYEQYLAPYVAMAHAENI 229 (507)
T ss_pred HHHHHHHhc--CCCeEEEEEEccCChHHHHHHHHHhhhcCcee-------eeEEEEeCCC-CHHHHHHHHHHHHHHHHHH
Confidence 544444443 2355 799999999999999999999999998 9999999985 9999999999999999999
Q ss_pred HHCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCCC-CCceeEEEEEEecCCCCCCCccc
Q psy2896 237 RDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTK-KGSITSIQAVYVPADDLTDPSPA 315 (467)
Q Consensus 237 r~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~~-~GSiT~~~tv~~~~~d~~dpi~~ 315 (467)
|++ +|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+.. +||||++|+|++++||++|||||
T Consensus 230 rd~-~dVLlv~DdLTr~A~A~REisLllgepPgregYPg~vF~~~srLlERAg~~~g~GSITalpiV~t~~dDis~pIpd 308 (507)
T PRK07165 230 SYN-DDVLIVFDDLTKHANIYREIALLTNKPVGKEAFPGDMFFAHSKLLERAGKFKNRKTITALPILQTVDNDITSLISS 308 (507)
T ss_pred Hhc-CceEEEEcChHHHHHHHHHHHhhccCCCCccCCCchHHHHhHHHHHhccCCCCCCceEEEEEEECCCCCCCCcchh
Confidence 999 9999999999999999999999999999999999999999999999999864 79999999999999999999999
Q ss_pred ccccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHH
Q psy2896 316 TTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLL 395 (467)
Q Consensus 316 ~~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~~~~~~ 395 (467)
+++||+||||+|||+||++||||||||+.|+||+| +.+.+++|++++..+|.+|++|+++++++++ |++ ++++++++
T Consensus 309 nv~sItDGqIvLsr~L~~~G~~PAIDvl~SvSRv~-~~~q~~~~~~~a~~~r~~la~Y~e~e~~~~~-~~~-ld~~~~~~ 385 (507)
T PRK07165 309 NIISITDGQIVTSSDLFASGKLPAIDIDLSVSRTG-SSVQSKTITKVAGEISKIYRAYKRQLKLSML-DYD-LNKETSDL 385 (507)
T ss_pred hhccccCeEEEEcHHHHhCCCCCCcCCccchhhcc-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-CCHHHHHH
Confidence 99999999999999999999999999999999999 5778999999999999999999999999886 884 88999999
Q ss_pred HHHHHHHHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhcCCCCCCch
Q psy2896 396 VARARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISSGELDNIPE 446 (467)
Q Consensus 396 ~~~~~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~g~~d~~~~ 446 (467)
++++++|++||+|+.+ .+.+..+.+..+..+..|+++.+|.
T Consensus 386 l~~g~~i~~~L~Q~~~----------~~~~~~~~~~~~~~~~~~~l~~~~~ 426 (507)
T PRK07165 386 LFKGKMIEKMFNQKGF----------SLYSYRFVLLISKLISWGLLKDVKD 426 (507)
T ss_pred HHHHHHHHHHhCCCCC----------CCCCHHHHHHHHHHHHhhhhhhCCc
Confidence 9999999999999977 5778888888888999999999998
No 23
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=100.00 E-value=2.5e-106 Score=855.42 Aligned_cols=421 Identities=28% Similarity=0.401 Sum_probs=381.0
Q ss_pred CceEEEEEcceEEEEecCCCcceeeeeeeeeCceEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecCCCCC
Q psy2896 3 DGKIIQCIGSVVDVEFPHNMVPKIYNALKIENSELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKAT 82 (467)
Q Consensus 3 ~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~~~~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpvg~~l 82 (467)
.|+|.+|+|+++++.|+. .+.+++.|+++++.+.+||+++. ++.+.+++|+++.||++|+.|..||++++|++|++|
T Consensus 1 ~G~I~~V~Gpvv~a~g~~--~~~~gE~v~v~~~~l~gEVi~~~-~d~a~iqvye~t~Gl~~G~~V~~tg~plsV~lGpgl 77 (578)
T TIGR01043 1 KGRIIRVSGPLVVADGMK--GAQMYEVVKVGEEGLIGEIIRIE-GDKAFIQVYEETSGIKPGEPVVGTGAPLSVELGPGL 77 (578)
T ss_pred CCEEEEEECCEEEEecCC--CCCcCCEEEECCCcEEEEEEEEc-CCeEEEEECCCCCCCCCCCEEEECCCccEEEcCHHH
Confidence 499999999999999975 35577888897567999999976 578899999999999999999999999999999999
Q ss_pred cceEEEeecCcCCCCCC----c----------c-----------------------------------------------
Q psy2896 83 LGRIINVLGDPIDEKGN----I----------S----------------------------------------------- 101 (467)
Q Consensus 83 LGRVld~lG~PiDg~~~----~----------~----------------------------------------------- 101 (467)
||||+|++|+|||+.+. . .
T Consensus 78 LGrV~DgigrPLd~~~~~~g~~i~rg~~~~~l~~~~~w~f~p~~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~ 157 (578)
T TIGR01043 78 LGSIYDGVQRPLDVLKEKTGDFIARGVDAPGLDRDKKWHFKPTVKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEIV 157 (578)
T ss_pred hcceeccCCccccCcccccccccccCccCCCcCcccccccccccccCccccCCceEEEEecccceeeeeecCCCCcceEE
Confidence 99999999999997621 1 1
Q ss_pred --------------------------cccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCch
Q psy2896 102 --------------------------NKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKT 155 (467)
Q Consensus 102 --------------------------~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt 155 (467)
..++||+.. ||++.+|.++++||.||+|+||+|+||+||||++|||++|+|||
T Consensus 158 ~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~wPvr~-p~p~~~R~~~~~pL~TGiRvID~l~Pi~kGqr~~I~gg~G~GKT 236 (578)
T TIGR01043 158 EIAEEGDYTVEDTIAVVDTDGDEEIKMYQKWPVRI-PRPYKEKLPPEVPLITGQRILDTFFPIAKGGTAAIPGPFGSGKT 236 (578)
T ss_pred EeccCCCceeeeeEEEEecCCceeeeeeeeccccc-CCCchhcCCCCcchhccchhhhccccccCCCEEEEecCCCCCHH
Confidence 112679977 88899999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy2896 156 VNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEG 235 (467)
Q Consensus 156 ~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~ 235 (467)
+|++|++++. +.|++||++||||++|++||++++.+..--..-.+.++|||+|++|||+|+.+|++++|+|+|+|||
T Consensus 237 ~l~~~lak~~---~adivVyvg~GERG~E~~e~le~f~~l~dp~~g~~~m~RTvlVanTSn~p~~aR~~s~ytg~TiAEY 313 (578)
T TIGR01043 237 VTQHQLAKWS---DADIVVYIGCGERGNEMTDVLEEFPELKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEY 313 (578)
T ss_pred HHHHHHHhcC---CCCEEEEEEeccChHHHHHHHHHhHhhcccccccccccceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999864 4599999999999999999999996521000011345599999999999999999999999999999
Q ss_pred HHHCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCC-------CCCceeEEEEEEecCCC
Q psy2896 236 FRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAST-------KKGSITSIQAVYVPADD 308 (467)
Q Consensus 236 fr~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~-------~~GSiT~~~tv~~~~~d 308 (467)
|||+|+|||+++||+||||+|+||||+++||||+++|||||+|++|++||||||.. ++||||+|++|++|+||
T Consensus 314 fRD~G~~Vllm~DS~sR~AeAlREIs~~lgE~P~~eGYP~yl~SrLa~~yERAG~~~~~~~~~r~GSIT~i~aVs~~ggD 393 (578)
T TIGR01043 314 FRDMGYDVALMADSTSRWAEAMREISGRLEEMPGEEGYPAYLASRLAEFYERAGRVKTLGGEERVGSVTVIGAVSPPGGD 393 (578)
T ss_pred HHHCCCCEEEEecChhHHHHHHHHHHHhcCCCCCCCCcCccHHHHHHHHHHhhccccccCCCCCCccEeEEEEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999964 26999999999999999
Q ss_pred CCCCcccccccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCcc-------ccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2896 309 LTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLI-------VGKKHYKIARLVQSTLQRYKELRDIIS 381 (467)
Q Consensus 309 ~~dpi~~~~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~-------~~~~~~~~a~~~r~~la~~~~~~~~i~ 381 (467)
++||||++|++|+||||+|||+||++||||||||+.|+||++ +.+ ++++|.+++++++++|++|+|+++|++
T Consensus 394 ~sdPVt~~t~~i~dg~i~Ldr~LA~~ghyPAId~l~S~Sr~~-~~~~~~~~~~v~~~~~~~~~~~~~lL~~~~el~~iv~ 472 (578)
T TIGR01043 394 FSEPVTQNTLRIVKVFWALDADLAQRRHFPAINWLQSYSLYV-DLVQDWWHENVDPDWREMRDEAMDLLQKESELQEIVQ 472 (578)
T ss_pred CCccHHHHHHHHhCcEEEeCHHHHhcCCCCCcCcccchhhhc-cccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999 555 789999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHH-HHhcCCCcccceeccCCCeeecHHHHHHHHHHhh
Q psy2896 382 ILGMDELSPEDKLLVARARKMQ-RFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLIS 437 (467)
Q Consensus 382 ~~g~~~~~~~~~~~~~~~~~i~-~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~ 437 (467)
+.|.+++++.|+..+++++.++ .||+|+.|. ..+.++++++++..|..|+
T Consensus 473 lvG~d~L~~~d~~il~~a~~i~e~FLqQ~~~~------~~d~~~~~~k~~~~L~~i~ 523 (578)
T TIGR01043 473 LVGPDALPERQKLILEVARMIREAFLQQNAFD------PVDTYCPPQKQYRILRAIM 523 (578)
T ss_pred ccCCCCCCHHHHHHHHHhHHHHHhhCCCCCCC------CccCCCCHHHHHHHHHHHH
Confidence 9999999999999999999996 899999752 1246789999999987775
No 24
>KOG1350|consensus
Probab=100.00 E-value=1.5e-107 Score=795.27 Aligned_cols=464 Identities=68% Similarity=1.069 Sum_probs=451.2
Q ss_pred CCceEEEEEcceEEEEecCCCcceeeeeeeeeCc--eEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecCC
Q psy2896 2 SDGKIIQCIGSVVDVEFPHNMVPKIYNALKIENS--ELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVG 79 (467)
Q Consensus 2 ~~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~~~--~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpvg 79 (467)
+.|+|+.|.|.++++.+.. ..|+|.+.+++.+. .+.+||.++++++.|+.+.++.++|+.+|+.|..||.|.+||||
T Consensus 51 ~~G~i~avIGavvDv~F~~-~~P~ilNaLev~~~~~~lvlEV~qhlG~n~VR~iAMdgTEGLvRG~~VlDtG~Pi~ipVG 129 (521)
T KOG1350|consen 51 NKGRIVAVIGAVVDVQFEE-GLPPILNALEVKGRDTRLVLEVAQHLGENTVRTIAMDGTEGLVRGQKVLDTGYPISIPVG 129 (521)
T ss_pred cCCcEEEEEeeeEEEecCC-CCcchhhceeecCCCceeeeHHHHHhCcCeEEEEEecCchhhhcCcccccCCCceeeecC
Confidence 4799999999999999965 45889999999853 69999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhhHH
Q psy2896 80 KATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMM 159 (467)
Q Consensus 80 ~~lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L~~ 159 (467)
++.||||+|.+|+|+|.++|+....+.||+..+|.+.+.....++|.||||++|.|.|..||.++|+||++|+|||+|++
T Consensus 130 ~~tLGRI~NViGePiDerGpi~s~~~~~IHaeaP~f~e~s~~~eIl~TGIKVvDLLAPYakGGKIGLFGGAGVGKTVlIm 209 (521)
T KOG1350|consen 130 PETLGRIMNVIGEPIDERGPIKSKKYSPIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIM 209 (521)
T ss_pred HHHHhhHHHhcCCcccccCCcccccccccccCChhHhhhcccHHHHhhcceeeeeecccccCCeeeeeccCCccceeeHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHC
Q psy2896 160 ELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDE 239 (467)
Q Consensus 160 ~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~ 239 (467)
++++|++|.|.+++||+++|||.||.+|+++++.+.|+++. +..-+|..+|+.++++||++|.+++.+++++||||||+
T Consensus 210 ELINNiAKaHGGySVF~GvGERTREGNDLY~EM~E~gVI~l-~~~~SKvaLV~GQMNePPGARaRV~LTgLTvAEYFRD~ 288 (521)
T KOG1350|consen 210 ELINNIAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINL-EGETSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQ 288 (521)
T ss_pred HHHHHHHHhcCCeEEeeccccccccccHHHHHHHhcCeeec-cCCcceEEEEeeccCCCCCceeeeeeecccHHHHhhcc
Confidence 99999999999999999999999999999999999999873 23337999999999999999999999999999999998
Q ss_pred -CCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCCCCCceeEEEEEEecCCCCCCCcccccc
Q psy2896 240 -GKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQAVYVPADDLTDPSPATTF 318 (467)
Q Consensus 240 -g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~~~GSiT~~~tv~~~~~d~~dpi~~~~~ 318 (467)
|+|||+++||++||.+|.+|+|.++||+|+..||+|.+-+++..++||...+++||||.+++|++|.||++||.|..++
T Consensus 289 egQDVLLFIDNIFRFtQAGSEVSALLGRiPSAVGYQPTLaTdMG~mQERITtTkkGSiTSvQAvYVPADDLtDPaPattF 368 (521)
T KOG1350|consen 289 EGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAVYVPADDLTDPAPATTF 368 (521)
T ss_pred ccceEEEeehhhhhhhccchHHHHHhccCccccccCcccccchhhhhHhhhccccCceeEEEEEEeehhccCCCCcccee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q psy2896 319 AHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVAR 398 (467)
Q Consensus 319 ~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~~~~~~~~~ 398 (467)
+++|.+-||||.+|+.|+|||+|||.|.||+|++.+++++|+.+|+.++++|+.||++||+|+++|++++|++|+.++++
T Consensus 369 aHLDAttVLSR~iaelgIYPAVDPLDStSrimdp~ivG~eHY~vA~~Vqk~LQ~YKsLQDIIAILGmDELSEeDkLTV~R 448 (521)
T KOG1350|consen 369 AHLDATTVLSRGIAELGIYPAVDPLDSTSRIMDPNIVGEEHYNVARGVQKTLQDYKSLQDIIAILGMDELSEEDKLTVAR 448 (521)
T ss_pred eccchhhhhhhhhHhcCCccccCCccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhchhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhcCCCCCCchhhhcccCCHHHHHHHHHhhcC
Q psy2896 399 ARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAIKKSKKLMK 467 (467)
Q Consensus 399 ~~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (467)
+++|++||+|||.++|.|||.+|+.++++||+..+.+|+.|+||++|+..|||+|+|||+++|+++|++
T Consensus 449 ARKiqRFLSQPF~VAEvFTG~~GklV~l~~ti~gF~~iL~Ge~D~lPE~AFYmvG~iee~~~KA~~la~ 517 (521)
T KOG1350|consen 449 ARKIQRFLSQPFQVAEVFTGHPGKLVPLEETIRGFKAILEGEYDHLPEQAFYMVGGIEEVVAKAEKLAK 517 (521)
T ss_pred HHHHHHHHcCchhhhhhhcCCCCceecHHHHHHHHHHHhcCcccCCchhheeeecCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999864
No 25
>PRK06820 type III secretion system ATPase; Validated
Probab=100.00 E-value=1.9e-105 Score=834.21 Aligned_cols=409 Identities=29% Similarity=0.426 Sum_probs=385.8
Q ss_pred CceEEEEEcceEEEEecCCCcceeeeeeeeeCceEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecCCCCC
Q psy2896 3 DGKIIQCIGSVVDVEFPHNMVPKIYNALKIENSELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKAT 82 (467)
Q Consensus 3 ~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~~~~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpvg~~l 82 (467)
.|+|++|.|+++++.++++.+ |++|.+..++..+||+++.+ +.+.++||++++||++|++|..|++++++|+|++|
T Consensus 30 ~G~v~~v~g~~~~~~~~~~~~---ge~~~i~~~~~~~eVv~~~~-~~~~l~~~~~~~gi~~g~~v~~tg~~~~v~vg~~l 105 (440)
T PRK06820 30 RGPIVEIGPTLLRASLPGVAQ---GELCRIEPQGMLAEVVSIEQ-EMALLSPFASSDGLRCGQWVTPLGHMHQVQVGADL 105 (440)
T ss_pred eeEEEEEECcEEEEEECCCCc---CCEEEEecCCeEEEEEEEeC-CeEEEEEccCccCCCCCCEEEECCCCcEEEechhh
Confidence 499999999999999987554 46666753348999999865 67999999999999999999999999999999999
Q ss_pred cceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhhHHHHH
Q psy2896 83 LGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELI 162 (467)
Q Consensus 83 LGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L~~~i~ 162 (467)
||||+|++|+|||+.+++ ...++|++..+|+|++|.++++++.||||+||.|+|+++|||++|||++|+|||+|+.+|+
T Consensus 106 lGrv~d~~G~pld~~~~~-~~~~~~i~~~~p~p~~R~~~~~~l~TGi~aID~l~~i~~Gqri~I~G~sG~GKStLl~~I~ 184 (440)
T PRK06820 106 AGRILDGLGAPIDGGPPL-TGQWRELDCPPPSPLTRQPIEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLGMLC 184 (440)
T ss_pred cCCEECccCCccCCCCCC-CcccccccCCCCChhhcCCchhhccCCCceecceEEecCCCEEEEECCCCCChHHHHHHHh
Confidence 999999999999998766 4567899999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCc
Q psy2896 163 NNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKD 242 (467)
Q Consensus 163 ~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g~~ 242 (467)
++. +.+++||++||||++|+++|++.....+.+. ++++|++++|+||.+|++++++|+++|||||++|+|
T Consensus 185 ~~~---~~dv~V~~~iGergrEv~ef~e~~l~~~~~~-------rtvvv~atsd~p~~~r~~a~~~a~tiAEyfrd~G~~ 254 (440)
T PRK06820 185 ADS---AADVMVLALIGERGREVREFLEQVLTPEARA-------RTVVVVATSDRPALERLKGLSTATTIAEYFRDRGKK 254 (440)
T ss_pred ccC---CCCEEEEEEEccChHHHHHHHHHhhccCCce-------eEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 653 4689999999999999999999987777776 999999999999999999999999999999999999
Q ss_pred EEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCCCCCceeEEEEEEecCCCCCCCcccccccccc
Q psy2896 243 VLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQAVYVPADDLTDPSPATTFAHLD 322 (467)
Q Consensus 243 Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~~~GSiT~~~tv~~~~~d~~dpi~~~~~~i~d 322 (467)
||++|||+||||+|+|||++++||||+++||||++|+.|++|+||||+.++||||+||||++|+||++|||||++++|+|
T Consensus 255 VLl~~Dsltr~A~A~REisl~~gepP~~~GYP~~vf~~l~~L~ERag~~~~GSIT~i~tVl~~gdD~~dpI~d~~~~ilD 334 (440)
T PRK06820 255 VLLMADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDRGSITAFYTVLVEGDDMNEPVADEVRSLLD 334 (440)
T ss_pred EEEEccchhHHHHHHHHHHHhcCCCCccccCCccHHHHHHHHHHhhccCCCcceeEEEEEEccCCCCCCcchhhhccccc
Confidence 99999999999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred eEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCH-HHHHHHHHHHH
Q psy2896 323 STVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSP-EDKLLVARARK 401 (467)
Q Consensus 323 G~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~-~~~~~~~~~~~ 401 (467)
|||+|||+||++||||||||+.|+||+| +.+++++|++++.++|++|++|+++++|+++++|+.++| ++++++.++++
T Consensus 335 g~ivLsr~La~~g~yPAIDvl~S~SR~~-~~~~~~~~~~~a~~~r~~l~~y~e~~~li~~G~y~~g~d~~~d~~i~~~~~ 413 (440)
T PRK06820 335 GHIVLSRRLAGAGHYPAIDIAASVSRIM-PQIVSAGQLAMAQKLRRMLACYQEIELLVRVGEYQAGEDLQADEALQRYPA 413 (440)
T ss_pred eEEEECHHHHhCCCCCccCCcccccccc-hhhCCHHHHHHHHHHHHHHHhhhHHHHHHHhhCccCCCCHHHHHHHHhhHH
Confidence 9999999999999999999999999999 688999999999999999999999999999999987765 78899999999
Q ss_pred HHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhh
Q psy2896 402 MQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLIS 437 (467)
Q Consensus 402 i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~ 437 (467)
|++||+|+.+ ++++++||++.+++++
T Consensus 414 i~~fL~Q~~~----------e~~~~~~~~~~l~~~~ 439 (440)
T PRK06820 414 ICAFLQQDHS----------ETAHLETTLEHLAQVV 439 (440)
T ss_pred HHHHhCCCCC----------CCCCHHHHHHHHHHHh
Confidence 9999999976 7999999999999986
No 26
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=100.00 E-value=5.6e-106 Score=848.94 Aligned_cols=422 Identities=25% Similarity=0.374 Sum_probs=382.3
Q ss_pred CceEEEEEcceEEEEecCCCcceeeeeeeeeCceEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecCCCCC
Q psy2896 3 DGKIIQCIGSVVDVEFPHNMVPKIYNALKIENSELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKAT 82 (467)
Q Consensus 3 ~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~~~~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpvg~~l 82 (467)
+|+|++|+|++++|.|+. -..++++|+++++++.+||+++. ++.+.+++|+++.||++|+.|..|+++++|++|++|
T Consensus 2 ~G~V~~v~G~vV~a~g~~--~~~~gE~v~v~~~~l~gEVI~l~-~d~a~iq~ye~t~Gl~~G~~V~~tg~~lsv~lGpgl 78 (591)
T TIGR01042 2 YGYIYKVSGPVVVAENMA--GAAMYELVRVGHDELVGEIIRLE-GDKATIQVYEETSGLTVGDPVLRTGKPLSVELGPGI 78 (591)
T ss_pred ceEEEEEECCEEEEecCC--CCCcCCEEEECCCceEEEEEEEc-CCeEEEEEccCccCCCCCCEEEeCCCccEEEcCHHH
Confidence 699999999999999984 24577888896556999999975 578999999999999999999999999999999999
Q ss_pred cceEEEeecCcCCCCC----C-----------cc----------------------------------------------
Q psy2896 83 LGRIINVLGDPIDEKG----N-----------IS---------------------------------------------- 101 (467)
Q Consensus 83 LGRVld~lG~PiDg~~----~-----------~~---------------------------------------------- 101 (467)
||||+|++|+|||+.+ + +.
T Consensus 79 LG~V~DgigrPLd~~~~~~~~~fi~rG~~~~~ld~~~~w~f~p~~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~g~ 158 (591)
T TIGR01042 79 LGNIFDGIQRPLKAIAEQSQSIYIPRGVNVPALDRDKKWEFTPKKLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGT 158 (591)
T ss_pred hhcccCcCCCchHHHHhhccCccccCCCCCCCCCccccceeeccccccCCCccCCCeEEEEecCCceeeeeecCCCCceE
Confidence 9999999999999753 1 10
Q ss_pred -----------------------------cccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCC
Q psy2896 102 -----------------------------NKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGV 152 (467)
Q Consensus 102 -----------------------------~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~ 152 (467)
..++||+.. ||++++|.++++||.||+|+||+|+|||||||++|||++|+
T Consensus 159 v~~i~~~g~ytv~~~i~~~~~~g~~~~~~m~~~wPvr~-p~p~~~R~~~~~PL~TG~RvID~lfPi~kGqr~~I~gg~G~ 237 (591)
T TIGR01042 159 ITYIAPAGNYTVDDTVLEVEFQGVKKKFSMLQTWPVRS-PRPVTEKLPANTPLLTGQRVLDALFPCVQGGTTAIPGAFGC 237 (591)
T ss_pred EEEEccCCCceeeeEEEEEeeCCceeeeccceeeeccc-CCChhhccCCCCccccchhhhhhccchhcCCeEEEEcCCCc
Confidence 013689987 89999999999999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcc-cC-CCCCCCceEEEEEeCCCCCHHHHHHHHHHHH
Q psy2896 153 GKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKV-VN-LDKPEKSKVSMVYGQMNEPSGNRLRVALTGL 230 (467)
Q Consensus 153 GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~-~~-~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~ 230 (467)
|||+|++||+++. +.|++||++||||++|++||++++.+... .. ...+.++||++|++|||+|+.+|++++|+|+
T Consensus 238 GKT~l~~~lak~s---~aDviVyvg~GERG~Em~evle~fp~l~dp~~g~~~~~m~rtvlVa~tsd~p~~~R~~s~ytg~ 314 (591)
T TIGR01042 238 GKTVISQSLSKYS---NSDAIVYVGCGERGNEMAEVLMDFPELTMEVDGREESIMKRTTLVANTSNMPVAAREASIYTGI 314 (591)
T ss_pred CHHHHHHHHHhcc---CcCEEEEEEEeechHHHHHHHHHhHhhcccccccccccccceEEEEEcCCCCHHHHHHHHHHHH
Confidence 9999999998864 35899999999999999999999855320 00 1124556999999999999999999999999
Q ss_pred HHHHHHHHCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCC-------CCCceeEEEEEE
Q psy2896 231 TIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAST-------KKGSITSIQAVY 303 (467)
Q Consensus 231 ~~AE~fr~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~-------~~GSiT~~~tv~ 303 (467)
|+||||||+|+|||+++||+||||+|+||||+++||||+++|||||+|++||+||||||.. ++||||+|++|+
T Consensus 315 tiAEYfRD~G~~Vll~~DS~tR~AeAlREIsl~lgE~P~~eGYPayl~SrLa~l~ERAG~~~~~~~~~~~GSIT~i~aVs 394 (591)
T TIGR01042 315 TLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGSPEREGSVSIVGAVS 394 (591)
T ss_pred HHHHHHHhcCCCEEEEecChHHHHHHHHHHHhccCCCCCCCCcCccHHHHHHHHHHhccCCccCCCCCCCccEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999963 379999999999
Q ss_pred ecCCCCCCCcccccccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccc------cHHHHHHHHHHHHHHHHHHHHH
Q psy2896 304 VPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIV------GKKHYKIARLVQSTLQRYKELR 377 (467)
Q Consensus 304 ~~~~d~~dpi~~~~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~------~~~~~~~a~~~r~~la~~~~~~ 377 (467)
+||||++|||++++++|+||||+|||+||++||||||||+.|+||++ +.+. +++|.++++++|++|++|++++
T Consensus 395 ~~ggD~sePVt~~t~~i~~~f~~Ldr~LA~~ghyPAId~l~S~Sr~~-~~l~~~~~~~~~~~~~~~~~~~~lL~~~~el~ 473 (591)
T TIGR01042 395 PPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYM-RALEEFYEKFYPEFVPLRTKAKEILQEEEDLN 473 (591)
T ss_pred CCCCCCCCchHHHHHHHhcceeeeCHHHHhCCCCCCcCCchhhhhhh-hhcccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 5666 7999999999999999999999
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHH-HHhcCCCcccceeccCCCeeecHHHHHHHHHHhhc
Q psy2896 378 DIISILGMDELSPEDKLLVARARKMQ-RFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISS 438 (467)
Q Consensus 378 ~~i~~~g~~~~~~~~~~~~~~~~~i~-~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~ 438 (467)
++++++||+.+++.|+..+.+++.+. .||+|++|.+ .++++++++|+..|..|+.
T Consensus 474 eiv~l~g~~~l~~~d~~i~~~a~~i~e~FLqQ~a~~~------~d~~~~~~kt~~~L~~i~~ 529 (591)
T TIGR01042 474 EIVQLVGKDALAETDKITLEVAKLIKEDFLQQNGYTP------YDRFCPFYKTVGMMRNMIA 529 (591)
T ss_pred HHHHHhCCccCCHHHHHHHHHHHHHHHHhCCCCCCCC------ccccCCHHHHHHHHHHHHH
Confidence 99999999999989998888888776 8999996632 4689999999999987763
No 27
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=5e-105 Score=829.31 Aligned_cols=409 Identities=33% Similarity=0.507 Sum_probs=384.1
Q ss_pred ceEEEEEcceEEEEecCCCcceeeeeeeee---CceEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecCCC
Q psy2896 4 GKIIQCIGSVVDVEFPHNMVPKIYNALKIE---NSELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVGK 80 (467)
Q Consensus 4 GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~---~~~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpvg~ 80 (467)
|||++|.|++|+|.|+.+. ++++|.+. ++...+||++|. ++.+.+++|++++||++|+.|..|+++++||+|+
T Consensus 1 G~V~~i~G~~i~v~~~~~~---ige~~~i~~~~~~~~~~eVi~~~-~~~v~l~~~~~t~gl~~G~~V~~tg~~~~vpvg~ 76 (413)
T TIGR03497 1 GKVTRVIGLTIESKGPKAK---IGELCSILTKGGKPVLAEVVGFK-EENVLLMPLGEVEGIGPGSLVIATGRPLAIKVGK 76 (413)
T ss_pred CeEEEEECCEEEEEeCCCC---cCCEEEEEeCCCCeEEEEEEEEc-CCeEEEEEccCccCCCCCCEEEEcCCeeEEEcch
Confidence 8999999999999998744 45666663 446899999987 5789999999999999999999999999999999
Q ss_pred CCcceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhhHHH
Q psy2896 81 ATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMME 160 (467)
Q Consensus 81 ~lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L~~~ 160 (467)
+|||||+|++|+|||+.+++...++||++..||+|++|.++++++.||+++||.++|+++|||++|||++|+|||+|+.+
T Consensus 77 ~lLGRVid~~G~plD~~~~~~~~~~~~i~~~~p~~~~R~~~~~~~~tGi~~iD~l~~i~~Gqri~I~G~sG~GKTtLl~~ 156 (413)
T TIGR03497 77 GLLGRVLDGLGRPLDGEGPIIGEEPYPLDNPPPNPLKRPRIRDPLETGIKAIDGLLTIGKGQRVGIFAGSGVGKSTLLGM 156 (413)
T ss_pred hhcCCEEcCCCCcccCCCCCCCCccccccCCCcChHHccchhhhccccceeeeeEEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 99999999999999998887777789999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q psy2896 161 LINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEG 240 (467)
Q Consensus 161 i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g 240 (467)
|+++. +.++.+++++|||++|+++|+++......+ +|+++|++|+|+||.+|++++++|+++|||||++|
T Consensus 157 i~~~~---~~~~gvi~~~Ger~~ev~e~~~~~l~~~~~-------~~~v~v~~tsd~~~~~r~~~~~~a~tiAEyfr~~G 226 (413)
T TIGR03497 157 IARNA---KADINVIALIGERGREVRDFIEKDLGEEGL-------KRSVVVVATSDQPALMRLKAAFTATAIAEYFRDQG 226 (413)
T ss_pred HhCCC---CCCeEEEEEEccchHHHHHHHHHHhccccc-------ceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence 88753 357899999999999999999975333324 49999999999999999999999999999999999
Q ss_pred CcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCCCCCceeEEEEEEecCCCCCCCcccccccc
Q psy2896 241 KDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQAVYVPADDLTDPSPATTFAH 320 (467)
Q Consensus 241 ~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~~~GSiT~~~tv~~~~~d~~dpi~~~~~~i 320 (467)
+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+.++||||+||||++++||++|||||++++|
T Consensus 227 ~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~gyp~~~f~~l~~l~ERag~~~~GSIT~~~tVl~~gdD~~dpi~~~~~si 306 (413)
T TIGR03497 227 KDVLLMMDSVTRFAMAQREIGLAVGEPPTTRGYTPSVFSLLPKLLERSGNSQKGSITGFYTVLVDGDDMNEPIADAVRGI 306 (413)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHhcCCCCCCCCcCchHHHHhHHHHHHhcCCCCcceeEEEEEEccCCCCCCcchhhcccc
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred cceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCH-HHHHHHHHH
Q psy2896 321 LDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSP-EDKLLVARA 399 (467)
Q Consensus 321 ~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~-~~~~~~~~~ 399 (467)
+||||+|||+||++||||||||+.|+||++ +.+++++|+++++++|++|++|+++++++++++|+.++| +++++++++
T Consensus 307 ~dg~ivLsr~la~~g~~PAId~~~S~SR~~-~~~~~~~~~~~a~~~r~~l~~y~e~~~li~~g~~~~g~d~~~~~~i~~~ 385 (413)
T TIGR03497 307 LDGHIVLSRELAAKNHYPAIDVLASVSRVM-NEIVSEEHKELAGKLRELLAVYKEAEDLINIGAYKRGSNPKIDEAIRYI 385 (413)
T ss_pred ccEEEEECHHHHhCCCCCccCCccccccCc-cccCCHHHHHHHHHHHHHHHhhHHHHHHHHhcCcccCCCHHHHHHHHHH
Confidence 999999999999999999999999999999 678999999999999999999999999999999998887 588999999
Q ss_pred HHHHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhh
Q psy2896 400 RKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLIS 437 (467)
Q Consensus 400 ~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~ 437 (467)
++|++||+|+.+ +++++++++..|.+++
T Consensus 386 ~~i~~fl~Q~~~----------~~~~~~~~~~~l~~~~ 413 (413)
T TIGR03497 386 EKINSFLKQGID----------EKFTFEETVQLLKTLF 413 (413)
T ss_pred HHHHHHhCCCCC----------CCCCHHHHHHHHHhhC
Confidence 999999999987 7999999999998874
No 28
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=100.00 E-value=2.4e-105 Score=849.08 Aligned_cols=425 Identities=29% Similarity=0.426 Sum_probs=384.4
Q ss_pred CCCceEEEEEcceEEEEecCCCcceeeeeeeeeCceEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecCCC
Q psy2896 1 MSDGKIIQCIGSVVDVEFPHNMVPKIYNALKIENSELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVGK 80 (467)
Q Consensus 1 ~~~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~~~~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpvg~ 80 (467)
|..|+|++|+|++++++++. .+.+++.|.+++..+.+||+++.+ +.+.+++|+++.||++|+.|..||++++|++|+
T Consensus 2 ~~~G~I~~V~Gpvv~~~~~~--~~~~~E~v~v~~~~l~gEVi~~~~-d~a~iqv~e~T~Gl~~G~~V~~tg~plsv~lGp 78 (586)
T PRK04192 2 MTKGKIVRVSGPLVVAEGMG--GARMYEVVRVGEEGLIGEIIRIEG-DKATIQVYEETSGIKPGEPVEFTGEPLSVELGP 78 (586)
T ss_pred CceeEEEEEECcEEEEEeCC--CCCccCEEEECCCcEEEEEEEEeC-CceEEEEecCCcCCCCCCEEEeCCCccEEEcCH
Confidence 46899999999999999975 355778888976679999999865 678999999999999999999999999999999
Q ss_pred CCcceEEEeecCcCCCCCC--------------cc---------------------------------------------
Q psy2896 81 ATLGRIINVLGDPIDEKGN--------------IS--------------------------------------------- 101 (467)
Q Consensus 81 ~lLGRVld~lG~PiDg~~~--------------~~--------------------------------------------- 101 (467)
+|||||+|++|+|||+.+. +.
T Consensus 79 glLGrv~Dg~grPLd~~~~~~~~~i~rG~~~~~l~~~~~w~f~p~~k~gd~v~~gdi~g~v~e~~~~~h~imvp~~~~g~ 158 (586)
T PRK04192 79 GLLGSIFDGIQRPLDELAEKSGDFLERGVYVPALDREKKWEFTPTVKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSGT 158 (586)
T ss_pred HhcCCeecCCCCcccccchhcccccccCCCCCCCCcccccceecccccCCEecCCceEEEEecCCceeeeeecCCCCceE
Confidence 9999999999999997641 01
Q ss_pred ------------------------------cccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCC
Q psy2896 102 ------------------------------NKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAG 151 (467)
Q Consensus 102 ------------------------------~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g 151 (467)
..++||++.++|. .+|.++++||.||+|+||+|+||+||||++|||++|
T Consensus 159 ~~~i~~~G~ytv~~~i~~~~~~~G~~~~~~~~~~wPvr~~~p~-~~R~~~~~pL~TGirvID~l~Pi~kGq~~~Ipg~~G 237 (586)
T PRK04192 159 VKEIVSEGDYTVDDTIAVLEDEDGEGVELTMMQKWPVRRPRPY-KEKLPPVEPLITGQRVIDTFFPVAKGGTAAIPGPFG 237 (586)
T ss_pred EEEEccCCCceeeeEEEEEEccCCceeeeccccccccccCCcc-cccCCCCCccccCchhhhcccccccCCeEEEecCCC
Confidence 1155899998887 999999999999999999999999999999999999
Q ss_pred CCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHH
Q psy2896 152 VGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLT 231 (467)
Q Consensus 152 ~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~ 231 (467)
+|||+|++||+++. +.|++||++||||++|++||++++.+.---..-.+.++||++|++|||+|+.+|++++|+|+|
T Consensus 238 ~GKTvl~~~iak~a---~adivVyvg~GERg~E~~e~l~ef~~l~dp~~g~~~m~RTvlVanTSn~Pv~aR~~s~ytgiT 314 (586)
T PRK04192 238 SGKTVTQHQLAKWA---DADIVIYVGCGERGNEMTEVLEEFPELIDPKTGRPLMERTVLIANTSNMPVAAREASIYTGIT 314 (586)
T ss_pred CCHHHHHHHHHhcC---CCCEEEEEEcCcChHHHHHHHHHHHhhcccccccccceeEEEEEECCCCCHHHHHHHHHHHHH
Confidence 99999999999974 358999999999999999999998752100001124559999999999999999999999999
Q ss_pred HHHHHHHCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCC-----CCCceeEEEEEEecC
Q psy2896 232 IAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAST-----KKGSITSIQAVYVPA 306 (467)
Q Consensus 232 ~AE~fr~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~-----~~GSiT~~~tv~~~~ 306 (467)
+||||||+|+|||+++||+||||+|+||||+++||||+++|||||+|++||+||||||.. .+||||++++|++|+
T Consensus 315 iAEYfRd~G~~Vllm~DStSR~AeAlREIS~~l~E~P~~eGYP~yL~S~La~~yERAG~v~~~~~~~GSIT~i~aVs~pg 394 (586)
T PRK04192 315 IAEYYRDMGYDVLLMADSTSRWAEALREISGRLEEMPGEEGYPAYLASRLAEFYERAGRVKTLGGEEGSVTIIGAVSPPG 394 (586)
T ss_pred HHHHHHHCCCCEEEEecChHHHHHHHHHHHHhcCCCCccCCcCccHHHHHHHHHHhhcccccCCCCCcceEEEEEEECCC
Confidence 999999999999999999999999999999999999999999999999999999999964 479999999999999
Q ss_pred CCCCCCcccccccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCc------cccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2896 307 DDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPL------IVGKKHYKIARLVQSTLQRYKELRDII 380 (467)
Q Consensus 307 ~d~~dpi~~~~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~------~~~~~~~~~a~~~r~~la~~~~~~~~i 380 (467)
||++||||++|++|+||||+|||+||++||||||||+.|+||+++.. .++++|.+++++++++|++|+++++++
T Consensus 395 gD~sePVt~~t~~i~dg~i~Ldr~LA~~ghyPAId~l~S~Sr~~~~~~~~~~~~v~~~~~~~~~~~~~~L~~~~el~eiv 474 (586)
T PRK04192 395 GDFSEPVTQNTLRIVKVFWALDAELADRRHFPAINWLTSYSLYLDQVAPWWEENVDPDWRELRDEAMDLLQREAELQEIV 474 (586)
T ss_pred CCCCcchHHHHHHHhCceEEEcHHHHhCCcCCccCCccchhhhhhcccchhhcccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999532 235999999999999999999999999
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHH-HHhcCCCcccceeccCCCeeecHHHHHHHHHHhhc
Q psy2896 381 SILGMDELSPEDKLLVARARKMQ-RFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISS 438 (467)
Q Consensus 381 ~~~g~~~~~~~~~~~~~~~~~i~-~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~ 438 (467)
++.|.++++++|+..+.++++|+ .||+|++|.. .+.++|+++++..|..|+.
T Consensus 475 ~lvG~d~Ls~~d~~~l~~a~~i~~~fL~Q~~f~~------~d~~~~l~k~~~~l~~i~~ 527 (586)
T PRK04192 475 RLVGPDALPEEDRLILEVARLIREDFLQQNAFDP------VDTYCPPEKQYEMLKLILT 527 (586)
T ss_pred HHhCcccCCHHHHHHHHHHHHHHHhhcCCCCCCC------ccccccHHHHHHHHHHHHH
Confidence 99999999999999999999998 6999997743 3578899999888876643
No 29
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=5.6e-105 Score=828.67 Aligned_cols=412 Identities=27% Similarity=0.406 Sum_probs=386.3
Q ss_pred CCceEEEEEcceEEEEecCCCcceeeeeeeee--Cc----eEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEec-----
Q psy2896 2 SDGKIIQCIGSVVDVEFPHNMVPKIYNALKIE--NS----ELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNT----- 70 (467)
Q Consensus 2 ~~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~--~~----~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~t----- 70 (467)
.+|||++|.|.+|+|.|+.+.++ +.|.+. ++ .+.+|||+|. ++.+.++||++++||+.|++|.++
T Consensus 27 ~~G~v~~v~g~~v~~~g~~~~iG---~~c~i~~~~~~~~~~~~~eVvg~~-~~~~~l~~~~~~~gi~~g~~v~~~~~~~~ 102 (455)
T PRK07960 27 RYGRLTRATGLVLEATGLQLPLG---ATCVIERQNGSETHEVESEVVGFN-GQRLFLMPLEEVEGILPGARVYARNISGE 102 (455)
T ss_pred cccEEEEEEEEEEEEeCCCCCCC---CEEEEEeCCCccccceeeeEEEec-CCEEEEEECCCccCCCCCCEEEECCcccc
Confidence 37999999999999999975555 555552 33 4789999986 578999999999999999999999
Q ss_pred --CCceeecCCCCCcceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeec
Q psy2896 71 --GKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFG 148 (467)
Q Consensus 71 --g~~~~vpvg~~lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g 148 (467)
+++++||||++|||||+|++|+|||+++++....++|++.+||+|++|.++++++.||||+||.|+|+++||+++|||
T Consensus 103 ~~~~~~~v~vg~~llGRvid~~G~piDg~~~~~~~~~~~i~~~~~~p~~R~~i~e~l~TGiraID~ll~I~~Gqri~I~G 182 (455)
T PRK07960 103 GLQSGKQLPLGPALLGRVLDGSGKPLDGLPAPDTGETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFA 182 (455)
T ss_pred cCCCceEEECCcccccCEECCCccccCCCCCCCCCccccccCCCcChHHhcccccchhccceeeeecccccCCcEEEEEC
Confidence 999999999999999999999999999887766778999999999999999999999999999999999999999999
Q ss_pred CCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHH
Q psy2896 149 GAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALT 228 (467)
Q Consensus 149 ~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~ 228 (467)
++|+|||+|+.+|+++. +.+++|+++||+|++|+.+|++.+.+.+.++ +++||++++|+||.+|++++++
T Consensus 183 ~sG~GKTTLL~~Ia~~~---~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~-------~tvVv~~~ad~~~~~r~~~~~~ 252 (455)
T PRK07960 183 GSGVGKSVLLGMMARYT---QADVIVVGLIGERGREVKDFIENILGAEGRA-------RSVVIAAPADVSPLLRMQGAAY 252 (455)
T ss_pred CCCCCccHHHHHHhCCC---CCCEEEEEEEEECCeEHHHHHHhhcCcCCCc-------eEEEEEECCCCCHHHHHHHHHH
Confidence 99999999999888753 3578899999999999999999987666665 9999999999999999999999
Q ss_pred HHHHHHHHHHCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCC--CCCceeEEEEEEecC
Q psy2896 229 GLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAST--KKGSITSIQAVYVPA 306 (467)
Q Consensus 229 a~~~AE~fr~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~--~~GSiT~~~tv~~~~ 306 (467)
|+++||||||+|+|||+++||+||||+|+|||++++||||+++||||++|+.|++|+||||+. ++||||+||||++|+
T Consensus 253 a~tiAEyfrd~G~~Vll~~DslTr~A~A~rEisl~~ge~P~~~gypp~~f~~l~~l~ERag~~~~~~GSIT~i~tVlv~~ 332 (455)
T PRK07960 253 ATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFYTVLTEG 332 (455)
T ss_pred HHHHHHHHHHcCCCeEEEecchhHHHHHHHHHHHhcCCCCccccCCcchhhhhhHHHHHHhcCCCCCeeeeeEEEEEEcC
Confidence 999999999999999999999999999999999999999999999999999999999999985 689999999999999
Q ss_pred CCCCCCcccccccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy2896 307 DDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMD 386 (467)
Q Consensus 307 ~d~~dpi~~~~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~ 386 (467)
||++|||||++++|+||||||||+||++||||||||+.|+||+| +.+++++|++.+.++|++|+.|+++++|+++++|+
T Consensus 333 dD~~dpi~d~~~~i~dg~ivLsr~la~~g~yPAID~l~S~SR~~-~~~~~~~~~~~~~~~r~~l~~Y~~~~dli~ig~y~ 411 (455)
T PRK07960 333 DDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAM-TALIDEQHYARVRQFKQLLSSFQRNRDLVSVGAYA 411 (455)
T ss_pred CCCCcchHHHhhhhcceEEEECHHHHhCCCCCccCcCcccCcCc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999999 57899999999999999999999999999999999
Q ss_pred CCCH-HHHHHHHHHHHHHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhc
Q psy2896 387 ELSP-EDKLLVARARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISS 438 (467)
Q Consensus 387 ~~~~-~~~~~~~~~~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~ 438 (467)
.++| ..++++.+.++|++||+|+++ +..+++|+++.|.+++.
T Consensus 412 ~G~d~~~D~ai~~~~~i~~fl~Q~~~----------e~~~~~~~~~~l~~~~~ 454 (455)
T PRK07960 412 KGSDPMLDKAIALWPQLEAFLQQGIF----------ERADWEDSLQALERIFP 454 (455)
T ss_pred CCCCHHHHHHHHhHHHHHHHhCCCCC----------CCcCHHHHHHHHHHhhc
Confidence 8887 577799999999999999987 78999999999999864
No 30
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=5.2e-105 Score=828.85 Aligned_cols=411 Identities=31% Similarity=0.462 Sum_probs=382.9
Q ss_pred ceEEEEEcceEEEEecCCCcceeeeeeeee--Cc-eEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecCCC
Q psy2896 4 GKIIQCIGSVVDVEFPHNMVPKIYNALKIE--NS-ELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVGK 80 (467)
Q Consensus 4 GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~--~~-~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpvg~ 80 (467)
|+|++|.|+++++.|+.. .+.++++|++. ++ ...+||++|. ++.+.+++|++++||++|+.|+.|+++++||||+
T Consensus 1 G~v~~v~g~~~~v~g~~~-~~~~ge~~~i~~~~~~~~~~eVv~~~-~~~v~l~~~~~~~gi~~G~~V~~tg~~~~i~vg~ 78 (418)
T TIGR03498 1 GRVTAVTGLLIEVRGLSR-AVRLGDRCAIRARDGRPVLAEVVGFN-GDRVLLMPFEPLEGVGLGCAVFAREGPLAVRPHP 78 (418)
T ss_pred CEEEEEECcEEEEEcCCC-ccCCCCEEEEEcCCCCEEEEEEEEEc-CCeEEEEEccCCcCCCCCCEEEECCCccEEEeCh
Confidence 899999999999999873 12466777785 23 5789999975 6889999999999999999999999999999999
Q ss_pred CCcceEEEeecCcCCCCCCcccc-cccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhhHH
Q psy2896 81 ATLGRIINVLGDPIDEKGNISNK-YVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMM 159 (467)
Q Consensus 81 ~lLGRVld~lG~PiDg~~~~~~~-~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L~~ 159 (467)
+|||||+|++|+|||+.+++... .++|++..||++++|.++++++.||+++||.++|+++|||++|||++|+|||+|+.
T Consensus 79 ~lLGRViD~lG~plD~~~~~~~~~~~~~i~~~~p~~~~R~~i~~~l~tGi~aiD~~~~i~~Gq~i~I~G~sG~GKTtLl~ 158 (418)
T TIGR03498 79 SWLGRVINALGEPIDGKGPLPQGERRYPLRASPPPAMSRARVGEPLDTGVRVIDTFLPLCRGQRLGIFAGSGVGKSTLLS 158 (418)
T ss_pred hhcCCEECCCCCccCCCCCCCCCcceechhhcCCChhhccCcccccCCccEEEeeeccccCCcEEEEECCCCCChHHHHH
Confidence 99999999999999998877555 45899999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHC
Q psy2896 160 ELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDE 239 (467)
Q Consensus 160 ~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~ 239 (467)
+|+.+. .++..+++++|||++|+++|++...+.+.++ ||++|++|+|+||.+|++++|+|+++|||||++
T Consensus 159 ~I~~~~---~~~~gvi~~iGer~~ev~~~~~~~l~~~~~~-------~tvvv~atsd~~~~~r~~a~~~a~~iAEyfrd~ 228 (418)
T TIGR03498 159 MLARNT---DADVVVIALVGERGREVREFLEDDLGEEGLK-------RSVVVVATSDESPLMRRQAAYTATAIAEYFRDQ 228 (418)
T ss_pred HHhCCC---CCCEEEEEEEeeechHHHHHHHHhhhccccc-------eeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 888653 2478899999999999999999764444455 999999999999999999999999999999999
Q ss_pred CCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcC--CCCCceeEEEEEEecCCCCCCCccccc
Q psy2896 240 GKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAS--TKKGSITSIQAVYVPADDLTDPSPATT 317 (467)
Q Consensus 240 g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~--~~~GSiT~~~tv~~~~~d~~dpi~~~~ 317 (467)
|+|||+++||+||||+|+||||+++||||+++||||++|+.||+|+||||+ .++||||+||||++|+||++|||||++
T Consensus 229 G~~Vll~~DslTr~A~A~REisl~~gepP~~~gyp~~vf~~l~~L~ERag~~~~~~GSIT~~~tVl~~gdd~~dpi~d~~ 308 (418)
T TIGR03498 229 GKDVLLLMDSVTRFAMAQREIGLAAGEPPVARGYTPSVFSELPRLLERAGPGAEGKGSITGIFTVLVDGDDHNEPVADAV 308 (418)
T ss_pred CCCEEEeccchhHHHHHHHHHHHhcCCCCccccCCchhhhhhhHHHHHhccCCCCCcceeeeEEEeccCCCCCCcchhhh
Confidence 999999999999999999999999999999999999999999999999996 358999999999999999999999999
Q ss_pred ccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCH-HHHHHH
Q psy2896 318 FAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSP-EDKLLV 396 (467)
Q Consensus 318 ~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~-~~~~~~ 396 (467)
++|+||||+|||+||++||||||||+.|+||+| +.+++++|++++.++|++|++|+++++++++++|++++| +.++++
T Consensus 309 ~si~DG~ivLsr~la~~g~~PAIDv~~S~SR~~-~~~~~~~~~~~a~~~r~~l~~y~e~~~~~~~g~y~~g~d~~~d~ai 387 (418)
T TIGR03498 309 RGILDGHIVLDRAIAERGRYPAINVLASVSRLA-PRVWSPEERKLVRRLRALLARYEETEDLIRLGAYRKGSDPELDEAI 387 (418)
T ss_pred heeeeeEEEECHHHHhCCCCCccCCcccccccc-hhhcCHHHHHHHHHHHHHHHhhHHHHHHHHhhCCcCCCCHHHHHHH
Confidence 999999999999999999999999999999999 788899999999999999999999999999999999886 678899
Q ss_pred HHHHHHHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhh
Q psy2896 397 ARARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLIS 437 (467)
Q Consensus 397 ~~~~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~ 437 (467)
+++++|++||+|+.+ ++++++++++.|.+++
T Consensus 388 ~~~~~i~~fl~Q~~~----------~~~~~~~~~~~l~~~~ 418 (418)
T TIGR03498 388 RLVPKIYEFLTQGPD----------EPTSLQDPFADLAAIL 418 (418)
T ss_pred HhHHHHHHHhCCCCC----------CCCCHHHHHHHHHhhC
Confidence 999999999999977 7999999999998874
No 31
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=100.00 E-value=7.6e-105 Score=828.30 Aligned_cols=410 Identities=27% Similarity=0.402 Sum_probs=385.4
Q ss_pred CceEEEEEcceEEEEecCCCcceeeeeeeeeCceEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecCCCCC
Q psy2896 3 DGKIIQCIGSVVDVEFPHNMVPKIYNALKIENSELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKAT 82 (467)
Q Consensus 3 ~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~~~~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpvg~~l 82 (467)
+|+|++|.|+++++.++++.++ ++|.+..++..+||+++.+ +.+.++||+++.||++|+.|..|+++++||||++|
T Consensus 22 ~G~v~~v~g~~~~~~~~~~~~g---e~~~i~~~~~~~eVv~~~~-~~~~l~~~~~~~gi~~g~~V~~tg~~~~v~vg~~l 97 (433)
T PRK07594 22 WGRIQDVSATLLNAWLPGVFMG---ELCCIKPGEELAEVVGING-SKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEAL 97 (433)
T ss_pred eeEEEEEECCEEEEEECCcCCC---CEEEEecCCeEEEEEEEcC-CeEEEEEccCCcCCCCCCEEEeCCCccEEEeChhh
Confidence 6999999999999999886555 5555642348899999865 67889999999999999999999999999999999
Q ss_pred cceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhhHHHHH
Q psy2896 83 LGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELI 162 (467)
Q Consensus 83 LGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L~~~i~ 162 (467)
||||+|++|+|||+.++. ...++|++..+|++++|..+++++.||+++||.++|+++|||++|||++|+|||+|+.+|+
T Consensus 98 lGrVid~~G~pld~~~~~-~~~~~~i~~~~p~~~~r~~v~~~l~tGi~aID~ll~i~~GqrigI~G~sG~GKSTLL~~I~ 176 (433)
T PRK07594 98 LGRVIDGFGRPLDGRELP-DVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC 176 (433)
T ss_pred ccCEEcccCCCcCCCCCC-cccccccccCCCCceeccCHhheeCCCceeeeeeeecCCCCEEEEECCCCCCccHHHHHhc
Confidence 999999999999998763 4567799999999999999999999999999999999999999999999999999998887
Q ss_pred HHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCc
Q psy2896 163 NNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKD 242 (467)
Q Consensus 163 ~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g~~ 242 (467)
++. +.+.+||++||||++|+++|++.+.+.+.++ ++++|++|+|+|+.+|++++|+|+++||||||+|+|
T Consensus 177 ~~~---~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~-------rtv~vv~tsd~p~~~r~~a~~~a~tiAEyfrd~G~~ 246 (433)
T PRK07594 177 NAP---DADSNVLVLIGERGREVREFIDFTLSEETRK-------RCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR 246 (433)
T ss_pred CCC---CCCEEEEEEECCCchHHHHHHHHhhccCCcc-------eEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 653 3578999999999999999999987766665 999999999999999999999999999999999999
Q ss_pred EEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCCCCCceeEEEEEEecCCCCCCCcccccccccc
Q psy2896 243 VLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQAVYVPADDLTDPSPATTFAHLD 322 (467)
Q Consensus 243 Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~~~GSiT~~~tv~~~~~d~~dpi~~~~~~i~d 322 (467)
||+++||+||||+|+||||+++||||+++||||++|+.||+|+||||..++||||+||||++|+||++|||||++++|+|
T Consensus 247 VLl~~Dsltr~A~A~REisl~~ge~P~~~Gyp~svf~~l~~l~ERag~~~~GSIT~~~tVl~~gdD~~dpi~d~~~~ilD 326 (433)
T PRK07594 247 VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLD 326 (433)
T ss_pred EEEEEeCHHHHHHHHHHHHHhcCCCCCCCCcCchhHHHhHHHHHhhcCCCCcchheeeeeeecCCCCCCchHHHhhhhcc
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred eEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCH-HHHHHHHHHHH
Q psy2896 323 STVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSP-EDKLLVARARK 401 (467)
Q Consensus 323 G~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~-~~~~~~~~~~~ 401 (467)
|||+|||+||++||||||||+.|+||+| +.+++++|+++|.++|++|++|+|+|+|+++++|..++| +.+++++++++
T Consensus 327 G~IvLsr~la~~g~yPAIDvl~S~SR~~-~~~~~~~h~~~a~~~r~~la~y~e~e~li~~G~y~~g~d~~~d~ai~~~~~ 405 (433)
T PRK07594 327 GHIVLSRRLAERGHYPAIDVLATLSRVF-PVVTSHEHRQLAAILRRCLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPD 405 (433)
T ss_pred eEEEEcHHHHhCCCCCccCCcccccccc-hhhCCHHHHHHHHHHHHHHHcchHHHHHHHhcCCCCCCCHHHHHHHHhhHH
Confidence 9999999999999999999999999999 788999999999999999999999999999999988886 78889999999
Q ss_pred HHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhc
Q psy2896 402 MQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISS 438 (467)
Q Consensus 402 i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~ 438 (467)
|++||+|+.+ ++++++++++.|.+++.
T Consensus 406 i~~fl~Q~~~----------~~~~~~~~~~~l~~~~~ 432 (433)
T PRK07594 406 ICTFLRQSKD----------EVCGPELLIEKLHQILT 432 (433)
T ss_pred HHHHhCCCCC----------CCCCHHHHHHHHHHHhc
Confidence 9999999977 89999999999999875
No 32
>PTZ00185 ATPase alpha subunit; Provisional
Probab=100.00 E-value=3.9e-104 Score=823.41 Aligned_cols=421 Identities=20% Similarity=0.258 Sum_probs=381.4
Q ss_pred CCceEEEEEcceEEE---EecCCCcceeeeeeeee---CceEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCcee
Q psy2896 2 SDGKIIQCIGSVVDV---EFPHNMVPKIYNALKIE---NSELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIM 75 (467)
Q Consensus 2 ~~GrV~~V~G~vi~a---~g~~~~~~~i~~~v~i~---~~~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~ 75 (467)
..|+|.+|.|.+..+ .|.. -...++++++. ++...+.|....+++.+.+++|++++||+.|+.|+.|+++++
T Consensus 39 ~~G~V~~v~~gia~v~~v~Gl~--~~~~gElv~f~~~~~~~~~G~vlnl~~d~~v~~v~lg~~~gI~~G~~V~~tg~~~~ 116 (574)
T PTZ00185 39 MIGYVHSIDGTIATLIPAPGNP--GVAYNTIIMIQVSPTTFAAGLVFNLEKDGRIGIILMDNITEVQSGQKVMATGKLLY 116 (574)
T ss_pred eeEEEEEEcCeEEEEeecCCCc--ccccCceEEEEcCCCCeEEEEEEEecCCCeEEEEEecCccCCCCCCEEEECCCccE
Confidence 379999998889996 5644 34466888774 334578888855433799999999999999999999999999
Q ss_pred ecCCCCCcceEEEeecCcCCCC------CCcccc-cccCCCCCCCCccccccccccccccceeeecccccccCceeeeec
Q psy2896 76 IPVGKATLGRIINVLGDPIDEK------GNISNK-YVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFG 148 (467)
Q Consensus 76 vpvg~~lLGRVld~lG~PiDg~------~~~~~~-~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g 148 (467)
||||++|||||+|++|+|||++ +++... .++|++.+||++++|.++++||+||||+||+|+|||||||++|||
T Consensus 117 VpVG~~lLGRVvD~lG~PIDg~~~~~~~g~i~~~~~~~pIe~~ap~~~~R~~v~epL~TGIkaID~LiPIGRGQR~lIfG 196 (574)
T PTZ00185 117 IPVGAGVLGKVVNPLGHEVPVGLLTRSRALLESEQTLGKVDAGAPNIVSRSPVNYNLLTGFKAVDTMIPIGRGQRELIVG 196 (574)
T ss_pred EECCcccccCEECCCCcccCCCCccccCCCCCcccccccccCCCcChhhcCCCCCcCcCCceeeeccccccCCCEEEeec
Confidence 9999999999999999999987 444444 467999999999999999999999999999999999999999999
Q ss_pred CCCCCchhhHHHHHHHHHh-------hCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHH
Q psy2896 149 GAGVGKTVNMMELINNIAK-------AHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGN 221 (467)
Q Consensus 149 ~~g~GKt~L~~~i~~~~~~-------~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~ 221 (467)
++|+|||+|+.+++.|+++ .++++|||++||||.+|++++++.+++.|+++ +|++|++|+|+||.+
T Consensus 197 d~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~-------~TvVV~AtAdep~~~ 269 (574)
T PTZ00185 197 DRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALR-------YTTVMAATAAEPAGL 269 (574)
T ss_pred CCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCcc-------ceEEEEECCCCCHHH
Confidence 9999999996555445442 24579999999999999999999999999998 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcC----CCCCcee
Q psy2896 222 RLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAS----TKKGSIT 297 (467)
Q Consensus 222 r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~----~~~GSiT 297 (467)
|++++|+||++||||||+|+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+ .++||||
T Consensus 270 r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~A~A~REISLllgrpPgRegYPgdVF~lhsrLlERAg~l~~~~G~GSIT 349 (574)
T PTZ00185 270 QYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLERAAMLSPGKGGGSVT 349 (574)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEcCchHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHhcccccCCCCCcceE
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 3479999
Q ss_pred EEEEEEecCCCCCCCcccccccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHH
Q psy2896 298 SIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELR 377 (467)
Q Consensus 298 ~~~tv~~~~~d~~dpi~~~~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~ 377 (467)
+||+|++++||++|||||+++||+||||+|||+||++|+||||||+.|+||++ ...+.+.|+++|.++|..|++|+|++
T Consensus 350 AlpiV~t~adDis~pIptnviSItDGqIvLsr~Lf~~GiyPAIDVl~SvSRvg-~~aq~~~~k~vAg~lr~~LaqY~El~ 428 (574)
T PTZ00185 350 ALPIVETLSNDVTAYIVTNVISITDGQIYLDTKLFTGGQRPAVNIGLSVSRVG-SSAQNVAMKAVAGKLKGILAEYRKLA 428 (574)
T ss_pred EEEEEEccCCCCCCcchHhhhhhcCeEEEEcHHHHhCCCCCCcCCcccccccC-CccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 56678999999999999999999999
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhcCCCCCCchhhh
Q psy2896 378 DIISILGMDELSPEDKLLVARARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISSGELDNIPEQAF 449 (467)
Q Consensus 378 ~~i~~~g~~~~~~~~~~~~~~~~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~g~~d~~~~~~~ 449 (467)
.+.+ +| ++.|...+++++++.+.|+|+ .+.++++.+..+++...|++|++|.+..
T Consensus 429 ~fa~-fg----sdld~~~l~rG~r~~ellkQ~------------~p~~~~~qv~~l~a~~~g~ld~~~~~~i 483 (574)
T PTZ00185 429 ADSV-GG----SQVQTVPMIRGARFVALFNQK------------NPSFFMNALVSLYACLNGYLDDVKVNYA 483 (574)
T ss_pred HHHh-hc----chhhHHHHHhhHHHHHHHCCC------------CCCCHHHHHHHHHHHhcCCcccCcHHHH
Confidence 9865 44 344448999999999999999 3689999999999999999999997654
No 33
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=2.1e-104 Score=824.17 Aligned_cols=405 Identities=32% Similarity=0.496 Sum_probs=381.7
Q ss_pred ceEEEEEcceEEEEecCCCcceeeeeeeee--Cc-eEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecCCC
Q psy2896 4 GKIIQCIGSVVDVEFPHNMVPKIYNALKIE--NS-ELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVGK 80 (467)
Q Consensus 4 GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~--~~-~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpvg~ 80 (467)
|+|++|.|++++++|+. +.++++|++. ++ ...+||+++ +++.+.+++|++++||++|+.|..|+++++||+|+
T Consensus 1 G~v~~v~g~~v~v~g~~---~~~ge~~~i~~~~~~~~~~eVv~~-~~~~v~l~~~~~t~gl~~G~~V~~tg~~~~v~vg~ 76 (411)
T TIGR03496 1 GRVTRVVGLVLEAVGLR---APVGSRCEIESSDGDPIEAEVVGF-RGDRVLLMPLEDVEGLRPGARVFPLEGPLRLPVGD 76 (411)
T ss_pred CEEEEEECcEEEEEeCC---CCcCCEEEEEcCCCCeEEEEEEEe-cCCEEEEEEccCccCCCCCCEEEECCCccEEEcch
Confidence 89999999999999986 4466777774 23 578999997 56899999999999999999999999999999999
Q ss_pred CCcceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhhHHH
Q psy2896 81 ATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMME 160 (467)
Q Consensus 81 ~lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L~~~ 160 (467)
+|||||+|++|+|||+.+++....+||++.+||+|++|..+++++.||+++||.++|+++||+++|||++|+|||+|+.+
T Consensus 77 ~llGrVid~~G~pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~~~tGi~~id~l~~i~~Gq~~~I~G~sG~GKTtLl~~ 156 (411)
T TIGR03496 77 SLLGRVIDGLGRPLDGKGPLDAGERVPLYAPPINPLKRAPIDEPLDVGVRAINGLLTVGRGQRMGIFAGSGVGKSTLLGM 156 (411)
T ss_pred hhcCCEECCCCCCcCCCCCCCcccccccccCCCCHHhccCcceEeeeeEEeecceEEEecCcEEEEECCCCCCHHHHHHH
Confidence 99999999999999999887777889999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q psy2896 161 LINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEG 240 (467)
Q Consensus 161 i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g 240 (467)
|+++. ..++.++++||||++|+.+|++.+.+.++++ ||++|++|+|+||.+|++++|+|+++|||||++|
T Consensus 157 I~~~~---~~~~~vi~~iGer~~ev~e~~~~~~~~~~~~-------~tvvv~~tsd~~~~~r~~a~~~a~tiAEyfr~~G 226 (411)
T TIGR03496 157 MARYT---EADVVVVGLIGERGREVKEFIEDILGEEGLA-------RSVVVAATADESPLMRLRAAFYATAIAEYFRDQG 226 (411)
T ss_pred HhcCC---CCCEEEEEEEecChHHHHHHHHHHhhCCCcc-------eEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence 88753 2478899999999999999999998888777 9999999999999999999999999999999999
Q ss_pred CcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCC--CCCceeEEEEEEecCCCCCCCcccccc
Q psy2896 241 KDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAST--KKGSITSIQAVYVPADDLTDPSPATTF 318 (467)
Q Consensus 241 ~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~--~~GSiT~~~tv~~~~~d~~dpi~~~~~ 318 (467)
+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+. ++||||+||||++|+||++|||||+++
T Consensus 227 ~~Vll~~Dsltr~A~A~REisl~~ge~P~~~gyp~~~f~~l~~l~ERag~~~~~~GSIT~~~tv~~~~dd~~dpi~~~~~ 306 (411)
T TIGR03496 227 KDVLLLMDSLTRFAMAQREIALAIGEPPATKGYPPSVFAKLPQLVERAGNGEEGKGSITAFYTVLVEGDDQQDPIADAAR 306 (411)
T ss_pred CCEEEEEeChHHHHHHHHHHHHhcCCCCCccCcCHHHHHHhHHHHHHhcccCCCCcceeEEEEEEccCCCCCCcchhhhc
Confidence 999999999999999999999999999999999999999999999999984 689999999999999999999999999
Q ss_pred cccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCH-HHHHHHH
Q psy2896 319 AHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSP-EDKLLVA 397 (467)
Q Consensus 319 ~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~-~~~~~~~ 397 (467)
+|+||||+|||+||++||||||||+.|+||++ +.+++++|+++++++|++|++|+|+++++++++|+.+++ +.+++++
T Consensus 307 ~i~dg~ivLsr~la~~g~~PAId~~~S~SR~~-~~~~~~~~~~~a~~~r~~l~~y~e~~~l~~~g~y~~g~d~~~d~~i~ 385 (411)
T TIGR03496 307 AILDGHIVLSRELAEQGHYPAIDILASISRVM-PDVVSPEHRQAARRFKQLLSRYQENRDLISIGAYQAGSDPELDQAIA 385 (411)
T ss_pred ccccEEEEEchhHHhCCCCCccCCCcccccch-hhhCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcCCCCHHHHHHHH
Confidence 99999999999999999999999999999999 788999999999999999999999999999999987665 5677999
Q ss_pred HHHHHHHHhcCCCcccceeccCCCeeecHHHHHHHH
Q psy2896 398 RARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGF 433 (467)
Q Consensus 398 ~~~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l 433 (467)
++++|++||+|+++ +++++++|++.|
T Consensus 386 ~~~~i~~fl~Q~~~----------~~~~~~~~~~~l 411 (411)
T TIGR03496 386 LYPRIEAFLQQGMR----------ERASFEESLEAL 411 (411)
T ss_pred HHHHHHHHhCCCCC----------CCCCHHHHHhhC
Confidence 99999999999988 789999998754
No 34
>PRK08149 ATP synthase SpaL; Validated
Probab=100.00 E-value=3e-104 Score=822.81 Aligned_cols=410 Identities=29% Similarity=0.435 Sum_probs=382.5
Q ss_pred CceEEEEEcceEEEEecCCCcceeeeeeeee----CceEE--EEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceee
Q psy2896 3 DGKIIQCIGSVVDVEFPHNMVPKIYNALKIE----NSELT--LEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMI 76 (467)
Q Consensus 3 ~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~----~~~~~--~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~v 76 (467)
+|||++|.|+++++.++++.++ ++|++. ++.+. +||+++. ++.+.++||++++|++.|+.|..++++++|
T Consensus 7 ~g~v~~i~g~~i~~~~~~~~~g---e~~~i~~~~~~~~~~~~~evv~~~-~~~~~l~~~~~~~gi~~g~~v~~~~~~~~v 82 (428)
T PRK08149 7 LAHPLRIQGPIIEAELPDVAIG---EICEIRAGWHSNEVIARAQVVGFQ-RERTILSLIGNAQGLSRQVVLKPTGKPLSV 82 (428)
T ss_pred eeEEEEEEeeEEEEEECCCCcC---CEEEEeecCCCCceeeEEEEEEee-CcEEEEEECCCccCCCCCCEEEEcCCcCEE
Confidence 6999999999999999986666 555552 22344 8999975 578999999999999999999999999999
Q ss_pred cCCCCCcceEEEeecCcCCCCC--Ccc--cccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCC
Q psy2896 77 PVGKATLGRIINVLGDPIDEKG--NIS--NKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGV 152 (467)
Q Consensus 77 pvg~~lLGRVld~lG~PiDg~~--~~~--~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~ 152 (467)
|+|++|||||+|++|+|+|+.+ +.. ..+++|++.+||++++|.++++|+.||+++||.++|+++|||++|||++|+
T Consensus 83 ~vg~~llGrv~d~~G~piD~~~~~~~~~~~~~~~~i~~~~~~~~~R~~i~e~l~tGi~aid~ll~i~~Gq~i~I~G~sG~ 162 (428)
T PRK08149 83 WVGEALLGAVLDPTGKIVERFDAPPTVGPISEERVIDVAPPSYAERRPIREPLITGVRAIDGLLTCGVGQRMGIFASAGC 162 (428)
T ss_pred EeChhhcCCeeCCCCCCcCCCCCCcccccccceeehhccCCcchhccCccccccCCcEEEeeeeeEecCCEEEEECCCCC
Confidence 9999999999999999999886 332 246789999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy2896 153 GKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTI 232 (467)
Q Consensus 153 GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~ 232 (467)
|||||+.+|+++. +.+++|+++||+|++|+++|++++.+.+.++ |+++|++|+|+||.+|++++|+|+++
T Consensus 163 GKTTLl~~i~~~~---~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~-------~~~vV~~~sd~p~~~r~~a~~~a~ti 232 (428)
T PRK08149 163 GKTSLMNMLIEHS---EADVFVIGLIGERGREVTEFVESLRASSRRE-------KCVLVYATSDFSSVDRCNAALVATTV 232 (428)
T ss_pred ChhHHHHHHhcCC---CCCeEEEEEEeeCCccHHHHHHHHhhccccc-------ceEEEEECCCCCHHHHHhHHHHHHHH
Confidence 9999999988753 3578889999999999999999998777776 99999999999999999999999999
Q ss_pred HHHHHHCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCCCCCceeEEEEEEecCCCCCCC
Q psy2896 233 AEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQAVYVPADDLTDP 312 (467)
Q Consensus 233 AE~fr~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~~~GSiT~~~tv~~~~~d~~dp 312 (467)
|||||++|+|||+++||+||||+|+|||++++||||+++||||++|+.|++|+||||+.++||||+||||++|+||++||
T Consensus 233 AE~fr~~G~~Vll~~DslTr~A~A~rEi~l~~ge~P~~~Gyp~~vfs~l~~l~ERag~~~~GSIT~~~tVl~~~dD~~dp 312 (428)
T PRK08149 233 AEYFRDQGKRVVLFIDSMTRYARALRDVALAAGELPARRGYPASVFDSLPRLLERPGATLAGSITAFYTVLLESEEEPDP 312 (428)
T ss_pred HHHHHHcCCCEEEEccchHHHHHHHHHhHhhcCCCCcccccCccHHHHHHHHHHhccCCCCCCceEEEEEEecCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred cccccccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCH-H
Q psy2896 313 SPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSP-E 391 (467)
Q Consensus 313 i~~~~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~-~ 391 (467)
|||++++|+||||+|||+||++||||||||+.|+||+| +.+++++|+++++++|++|++|+++++++++++|..+++ +
T Consensus 313 i~d~~~~ilDg~ivLsr~La~~g~yPAIDvl~S~SR~~-~~~~~~~~~~~a~~~r~~l~~y~e~e~li~~G~y~~g~~~~ 391 (428)
T PRK08149 313 IGDEIRSILDGHIYLSRKLAAKGHYPAIDVLKSVSRVF-GQVTDPKHRQLAAAFRKLLTRLEELQLFIDLGEYRRGENAD 391 (428)
T ss_pred chhhhheeccEEEEEcHHHHhCCCCCcccCccccccch-hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHH
Confidence 99999999999999999999999999999999999999 588899999999999999999999999999998977665 6
Q ss_pred HHHHHHHHHHHHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhh
Q psy2896 392 DKLLVARARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLIS 437 (467)
Q Consensus 392 ~~~~~~~~~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~ 437 (467)
.+++++++++|++||+|+++ +++++++++..|.+++
T Consensus 392 ~d~ai~~~~~i~~fl~Q~~~----------~~~~~~~~~~~l~~~~ 427 (428)
T PRK08149 392 NDRAMDKRPALEAFLKQDVA----------EKSSFSDTLERLNEFA 427 (428)
T ss_pred HHHHHHhHHHHHHHhCCCCC----------CCCCHHHHHHHHHHHh
Confidence 77799999999999999987 7999999999999886
No 35
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=2.7e-104 Score=824.32 Aligned_cols=410 Identities=28% Similarity=0.427 Sum_probs=385.1
Q ss_pred CceEEEEEcceEEEEecCCCcceeeeeeeeeC----ceEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecC
Q psy2896 3 DGKIIQCIGSVVDVEFPHNMVPKIYNALKIEN----SELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPV 78 (467)
Q Consensus 3 ~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~~----~~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpv 78 (467)
+|+|++|.|+++++.|+.+ .+|++|.+.. +...+||+++. ++.+.++||++++||+.|++|..|+++++||+
T Consensus 19 ~G~v~~v~g~~v~~~g~~~---~~ge~~~i~~~~~~~~~~~eVv~~~-~~~~~l~~~~~t~gl~~G~~V~~tg~~~~v~v 94 (434)
T PRK08472 19 FGSITKISPTIIEADGLNP---SVGDIVKIESSDNGKECLGMVVVIE-KEQFGISPFSFIEGFKIGDKVFISKEGLNIPV 94 (434)
T ss_pred eeEEEEEEccEEEEEecCC---CCCCEEEEecCCCCCceEEEEEEEe-CCeEEEEEccCCCCCCCCCEEEeCCCceEEEc
Confidence 6999999999999999873 4667777852 34899999976 57899999999999999999999999999999
Q ss_pred CCCCcceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhhH
Q psy2896 79 GKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNM 158 (467)
Q Consensus 79 g~~lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L~ 158 (467)
|++|||||+|++|+|||+.+++...+++|++.+||+|++|.++++++.||+++||.++|+++||+++|||++|+|||+|+
T Consensus 95 g~~llGRViD~~G~plD~~g~~~~~~~~~i~~~~~~~~~R~~i~~~l~tgi~aid~l~~i~~Gq~~~i~G~sG~GKStLl 174 (434)
T PRK08472 95 GRNLLGRVVDPLGRPIDGKGAIDYERYAPIMKAPIAAMKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLM 174 (434)
T ss_pred ChhhcCCEECCCCCcccCCCCCCcccccccccCCCCHHHcCCcceeccchhHHhhhcceecCCCEEEEECCCCCCHHHHH
Confidence 99999999999999999998877667889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy2896 159 MELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRD 238 (467)
Q Consensus 159 ~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~ 238 (467)
.+|+++.. .++++|+++|||++|+++|++.... +.++ ++++|++|+|+||.+|++++++|+++||||||
T Consensus 175 ~~i~~~~~---~~v~vi~~iGergrev~e~~~~~l~-~~l~-------~tvvV~atsddsp~~R~~~~~~a~~iAEyFrd 243 (434)
T PRK08472 175 GMIVKGCL---APIKVVALIGERGREIPEFIEKNLG-GDLE-------NTVIVVATSDDSPLMRKYGAFCAMSVAEYFKN 243 (434)
T ss_pred HHHhhccC---CCEEEEEeeCccchhHHHHHHHHhc-Cccc-------ceEEEEECCCCCHHHhhHHHHHHHHHHHHHHH
Confidence 99998643 4799999999999999999886532 2244 99999999999999999999999999999999
Q ss_pred CCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCCC-CCceeEEEEEEecCCCCCCCccccc
Q psy2896 239 EGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTK-KGSITSIQAVYVPADDLTDPSPATT 317 (467)
Q Consensus 239 ~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~~-~GSiT~~~tv~~~~~d~~dpi~~~~ 317 (467)
+|+|||+++||+||||+|+|||++++||||+++||||++|+.|++|+||||+.+ +||||+||||++|+||++|||||++
T Consensus 244 ~G~~Vll~~DslTr~A~A~REi~l~~ge~P~~~Gyp~~vf~~l~~l~ERag~~~g~GSIT~~~tVlv~gdD~~dpi~d~~ 323 (434)
T PRK08472 244 QGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSVLSLLPQLMERAGKEEGKGSITAFFTVLVEGDDMSDPIADQS 323 (434)
T ss_pred cCCCEEEecccchHHHHHHHHHHHhcCCCCCccCcCchHHHHHHHHHHHhccCCCCceeeEeEEEEecCCCCCCCchHHh
Confidence 999999999999999999999999999999999999999999999999999876 8999999999999999999999999
Q ss_pred ccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCH-HHHHHH
Q psy2896 318 FAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSP-EDKLLV 396 (467)
Q Consensus 318 ~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~-~~~~~~ 396 (467)
++|+||||+|||+||++||||||||+.|+||+| +.+++++|+++|.++|++|++|+++|+++++++|+.++| +.++++
T Consensus 324 ~~i~Dg~ivLsr~la~~g~~PAIDvl~S~SR~~-~~~~~~~~~~~a~~~r~~l~~y~e~e~li~~G~y~~g~d~~~d~ai 402 (434)
T PRK08472 324 RSILDGHIVLSRELTDFGIYPPINILNSASRVM-NDIISPEHKLAARKFKRLYSLLKENEVLIRIGAYQKGNDKELDEAI 402 (434)
T ss_pred hhhcceEEEEcHHHHhCCCCCccCCccccCccc-hhcCCHHHHHHHHHHHHHHHhchhHHHHHHhhCccCCCCHHHHHHH
Confidence 999999999999999999999999999999999 689999999999999999999999999999999988887 678899
Q ss_pred HHHHHHHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhc
Q psy2896 397 ARARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISS 438 (467)
Q Consensus 397 ~~~~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~ 438 (467)
+++++|++||+|+.+ ++++++++++.|.+++.
T Consensus 403 ~~~~~i~~fL~Q~~~----------~~~~~~~~~~~l~~~~~ 434 (434)
T PRK08472 403 SKKEFMEQFLKQNPN----------ELFPFEQTFEQLEEILR 434 (434)
T ss_pred HhHHHHHHHhCCCCC----------CCCCHHHHHHHHHHHhC
Confidence 999999999999987 89999999999999863
No 36
>PRK05922 type III secretion system ATPase; Validated
Probab=100.00 E-value=6e-104 Score=820.88 Aligned_cols=409 Identities=25% Similarity=0.359 Sum_probs=384.9
Q ss_pred CceEEEEEcceEEEEecCCCcceeeeeeeee---CceEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecCC
Q psy2896 3 DGKIIQCIGSVVDVEFPHNMVPKIYNALKIE---NSELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVG 79 (467)
Q Consensus 3 ~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~---~~~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpvg 79 (467)
+|+|++|.|+++++.|+.+. +|++|.+. ++...+||++|. ++.+.++||++++||++|+.|..++++++||+|
T Consensus 20 ~g~v~~v~g~~i~~~g~~~~---~ge~~~i~~~~~~~~~~eVv~~~-~~~~~l~~~~~~~gi~~G~~V~~~~~~~~v~vg 95 (434)
T PRK05922 20 CGLLSRVSGNLLEAQGLSAC---LGELCQISLSKSPPILAEVIGFH-NRTTLLMSLSPIHYVALGAEVLPLRRPPSLHLS 95 (434)
T ss_pred eeEEEEEEccEEEEEeCCCC---CCCEEEEecCCCCeeEEEEEEEe-CCeEEEEEccCCCCCCCCCEEEeCCCCcEEEcC
Confidence 69999999999999998743 66777784 335899999976 578999999999999999999999999999999
Q ss_pred CCCcceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhhHH
Q psy2896 80 KATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMM 159 (467)
Q Consensus 80 ~~lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L~~ 159 (467)
++|||||+|++|+|||+.+++....++|++.+||+|++|.+++++|.||||+||.|+|+++|||++|||++|+|||+|+.
T Consensus 96 ~~llGrv~d~~G~pld~~~~~~~~~~~pi~~~~~~~~~R~~i~e~l~TGIr~ID~ll~I~~GqrigI~G~nG~GKSTLL~ 175 (434)
T PRK05922 96 DHLLGRVLDGFGNPLDGKEQLPKTHLKPLFSSPPSPMSRQPIQEIFPTGIKAIDAFLTLGKGQRIGVFSEPGSGKSSLLS 175 (434)
T ss_pred hhhcCCEeCCCCCccCCCCCCCccceeecccCCCChhhcCCcceecCCCceeecceEEEcCCcEEEEECCCCCChHHHHH
Confidence 99999999999999999888776677899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHC
Q psy2896 160 ELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDE 239 (467)
Q Consensus 160 ~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~ 239 (467)
+|+++. ..++++|++||||++|+.+|++...+...++ ++++|++|+|+||.+|++++++|+++||||||+
T Consensus 176 ~Ia~~~---~~d~gvi~liGerg~ev~eyl~q~~~~~~~~-------rTVlv~atsd~~~~~r~~a~~~a~tiAEyfrd~ 245 (434)
T PRK05922 176 TIAKGS---KSTINVIALIGERGREVREYIEQHKEGLAAQ-------RTIIIASPAHETAPTKVIAGRAAMTIAEYFRDQ 245 (434)
T ss_pred HHhccC---CCCceEEEEeCCCCchHHHHHHHHHhhcccc-------ceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 988753 3588999999999999999999886655555 999999999999999999999999999999999
Q ss_pred CCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCCCCCceeEEEEEEecCCCCCCCccccccc
Q psy2896 240 GKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQAVYVPADDLTDPSPATTFA 319 (467)
Q Consensus 240 g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~~~GSiT~~~tv~~~~~d~~dpi~~~~~~ 319 (467)
|+|||+++||+||||+|+|||++++||||+++||||++|+.|++|+||||+.++||||+||||++++| .+|||+|++++
T Consensus 246 G~~VLl~~DslTR~A~A~REisl~~ge~P~~~gyp~svfs~l~~l~ERag~~~~GSIT~~~tVl~~~~-~~dpi~d~~rs 324 (434)
T PRK05922 246 GHRVLFIMDSLSRWIAALQEVALARGETLSAHHYAASVFHHVSEFTERAGNNDKGSITALYAILHYPN-HPDIFTDYLKS 324 (434)
T ss_pred CCCEEEeccchhHHHHHHHHHHHhcCCCCCcCCcCchHHHHhHHHHHhhcCCCCcceeEEEEEEecCC-CCCccccchhh
Confidence 99999999999999999999999999999999999999999999999999988999999999999998 78999999999
Q ss_pred ccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCH-HHHHHHHH
Q psy2896 320 HLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSP-EDKLLVAR 398 (467)
Q Consensus 320 i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~-~~~~~~~~ 398 (467)
|+||||||||+||+++ ||||||+.|+||+| +.+++++|+++|.++|++|++|+|+|+++++++|+.++| +.++++++
T Consensus 325 ilDGhIvLsr~la~~~-~PAIDvl~S~SR~~-~~~~~~~~~~~a~~~r~~l~~y~e~edli~~G~y~~g~d~~~d~a~~~ 402 (434)
T PRK05922 325 LLDGHFFLTPQGKALA-SPPIDILTSLSRSA-RQLALPHHYAAAEELRSLLKAYHEALDIIQLGAYVPGQDAHLDRAVKL 402 (434)
T ss_pred hcCcEEEEcHHHHhCC-CCCcCCccccccCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCHHHHHHHHh
Confidence 9999999999999987 99999999999999 678889999999999999999999999999999998887 67889999
Q ss_pred HHHHHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhc
Q psy2896 399 ARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISS 438 (467)
Q Consensus 399 ~~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~ 438 (467)
.+.|++||+|++. ++++++|+++.|.++++
T Consensus 403 ~~~i~~fl~Q~~~----------~~~~~~~~~~~l~~~~~ 432 (434)
T PRK05922 403 LPSIKQFLSQPLS----------SYCALHNTLKQLEALLK 432 (434)
T ss_pred HHHHHHHhCCCCC----------CCCCHHHHHHHHHHHHh
Confidence 9999999999987 89999999999999976
No 37
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=4.2e-102 Score=807.97 Aligned_cols=411 Identities=25% Similarity=0.374 Sum_probs=382.7
Q ss_pred CceEEEEEcceEEEEecCCCcceeeeeeeee--Cc-eEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecCC
Q psy2896 3 DGKIIQCIGSVVDVEFPHNMVPKIYNALKIE--NS-ELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVG 79 (467)
Q Consensus 3 ~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~--~~-~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpvg 79 (467)
.|||++|.|+++++.|+.+.++ ++|+|. ++ ...+|||+|. ++.+.+|||++++||+.|++|.+|+++++||||
T Consensus 18 ~G~v~~v~g~~~~~~~~~~~~g---e~~~i~~~~~~~~~~eVv~~~-~~~~~l~~~~~~~gi~~g~~v~~~~~~~~v~vg 93 (434)
T PRK07196 18 AGRLVRVTGLLLESVGCRLAIG---QRCRIESVDETFIEAQVVGFD-RDITYLMPFKHPGGVLGGARVFPSEQDGELLIG 93 (434)
T ss_pred eeEEEEEEcCEEEEecCCCCcC---CEEEEEeCCCceEEEEEEEec-CCEEEEEECCCccCCCCCCEEEECCCccEEEcC
Confidence 6999999999999999985555 666663 33 5899999986 578999999999999999999999999999999
Q ss_pred CCCcceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhhHH
Q psy2896 80 KATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMM 159 (467)
Q Consensus 80 ~~lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L~~ 159 (467)
++|||||+|++|+|||+.+++....+++++.++|+|++|.++++|+.||+++||.++|+++||+++|||++|+|||||+.
T Consensus 94 ~~llGrv~d~~G~pld~~~~~~~~~~~~~~~~~~~p~~R~~~~~~l~TGi~aID~ll~I~~GQ~igI~G~sGaGKSTLl~ 173 (434)
T PRK07196 94 DSWLGRVINGLGEPLDGKGQLGGSTPLQQQLPQIHPLQRRAVDTPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLG 173 (434)
T ss_pred ccccCCeeCcCCCCcCCCCCCCCCceeeccCCCCChHHhcccccccccceeeccceEeEecceEEEEECCCCCCccHHHH
Confidence 99999999999999999988766667899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHC
Q psy2896 160 ELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDE 239 (467)
Q Consensus 160 ~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~ 239 (467)
+|+++. ..+++|+++||+|++|+.+|++.......+. |++++++++|+|+.+|+.+++.++++||||+++
T Consensus 174 ~I~g~~---~~dv~vig~IGerg~ev~ef~~~~l~~~gl~-------rsvvv~~~~d~s~~~rl~a~e~a~~iAEyfr~~ 243 (434)
T PRK07196 174 MITRYT---QADVVVVGLIGERGREVKEFIEHSLQAAGMA-------KSVVVAAPADESPLMRIKATELCHAIATYYRDK 243 (434)
T ss_pred HHhccc---CCCeEEEEEEeeecHHHHHHHHHHhhhcccc-------eEEEEEecCCCChhhhHHHHHHHHHHHHHhhhc
Confidence 887753 2478889999999999999997643332243 999999999999999999999999999999999
Q ss_pred CCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCC-CCCceeEEEEEEecCCCCCCCcccccc
Q psy2896 240 GKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAST-KKGSITSIQAVYVPADDLTDPSPATTF 318 (467)
Q Consensus 240 g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~-~~GSiT~~~tv~~~~~d~~dpi~~~~~ 318 (467)
|+|||+++||+||||+|+||||+++||||+++|||||+|+.|++|+||||+. ++||||+||||++|+||++|||||+++
T Consensus 244 g~~Vll~~Dsltr~a~A~REisl~~ge~P~~~Gyp~svf~~l~~l~ERag~~~~~GSIT~~~tVl~~~dD~~dpi~d~~~ 323 (434)
T PRK07196 244 GHDVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQDPIVDCAR 323 (434)
T ss_pred cCCEEEeecchhHHHhhhhHHHHhcCCCCcccCcCHHHHHHhHHHHHHhhcCCCCEEeeeeeEEEccCCCCCCchhHhhh
Confidence 9999999999999999999999999999999999999999999999999986 479999999999999999999999999
Q ss_pred cccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCH-HHHHHHH
Q psy2896 319 AHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSP-EDKLLVA 397 (467)
Q Consensus 319 ~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~-~~~~~~~ 397 (467)
+|+||||||||+||++||||||||+.|+||+| +.+++++|+++|.++|++|++|+|+++|+++++|..++| ..+++++
T Consensus 324 ~ilDG~ivLsr~la~~g~yPAIDvl~S~SR~~-~~~~~~~~~~~a~~~r~~~a~y~e~~~li~~g~y~~g~d~~~d~ai~ 402 (434)
T PRK07196 324 AVLDGHIVLSRKLAEAGHYPAIDISQSISRCM-SQVIGSQQAKAASLLKQCYADYMAIKPLIPLGGYVAGADPMADQAVH 402 (434)
T ss_pred hhcceEEEEcHHHHhCCCCCccCCccccCccc-hhccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999 688999999999999999999999999999999988876 6888999
Q ss_pred HHHHHHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhc
Q psy2896 398 RARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISS 438 (467)
Q Consensus 398 ~~~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~ 438 (467)
++++|++||+|+++ ++++++|+++.|.+++.
T Consensus 403 ~~~~i~~fL~Q~~~----------e~~~~~~~~~~l~~~~~ 433 (434)
T PRK07196 403 YYPAITQFLRQEVG----------HPALFSASVEQLTGMFP 433 (434)
T ss_pred hHHHHHHHhCCCCC----------CCCCHHHHHHHHHHHhc
Confidence 99999999999987 89999999999999864
No 38
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=4.4e-101 Score=800.65 Aligned_cols=410 Identities=30% Similarity=0.386 Sum_probs=380.0
Q ss_pred CceEEEEEcceEEEEec--CCCcceeeeeeeee--CceEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecC
Q psy2896 3 DGKIIQCIGSVVDVEFP--HNMVPKIYNALKIE--NSELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPV 78 (467)
Q Consensus 3 ~GrV~~V~G~vi~a~g~--~~~~~~i~~~v~i~--~~~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpv 78 (467)
+|+|++|.|.++++.|+ ++. +|++|+|. ++...+||++|. ++.+.++||++++||+.|+.|.. ++++++++
T Consensus 27 ~G~v~~v~g~~~~~~g~~~~~~---iGe~~~i~~~~~~~~~eVv~~~-~~~~~l~~~~~~~gi~~g~~v~~-~~~~~v~v 101 (450)
T PRK06002 27 GGTVSEVTASHYRVRGLSRFVR---LGDFVAIRADGGTHLGEVVRVD-PDGVTVKPFEPRIEIGLGDAVFR-KGPLRIRP 101 (450)
T ss_pred eEEEEEEeceEEEEEcCccCCC---CCCEEEEECCCCcEEEEEEEEe-CCeEEEEEccCCcCCCCCCEEEe-CCCceeec
Confidence 69999999999999998 644 45666674 335889999976 57899999999999999999999 67899999
Q ss_pred CCCCcceEEEeecCcCCCCCCccccc-ccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhh
Q psy2896 79 GKATLGRIINVLGDPIDEKGNISNKY-VSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVN 157 (467)
Q Consensus 79 g~~lLGRVld~lG~PiDg~~~~~~~~-~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L 157 (467)
|++|||||+|++|+|||+.+++...+ ++|++.++|++++|..+++++.||+++||.|+||++|||++|||++|+|||+|
T Consensus 102 g~~llGRV~d~~G~piDg~~~~~~~~~~~~i~~~~p~~~~r~~v~~~l~TGi~aID~L~~I~~Gqri~I~G~SGsGKTTL 181 (450)
T PRK06002 102 DPSWKGRVINALGEPIDGLGPLAPGTRPMSIDATAPPAMTRARVETGLRTGVRVIDIFTPLCAGQRIGIFAGSGVGKSTL 181 (450)
T ss_pred CcccccCEECCCCcCCCCCCCCCCCcceeeccCCCCCCeEeecceEEcCCCcEEeeeeceecCCcEEEEECCCCCCHHHH
Confidence 99999999999999999998876654 57999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy2896 158 MMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFR 237 (467)
Q Consensus 158 ~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr 237 (467)
+.+|+... .++.++|+++|||++|+.+|.+...... +. +++.|++++|+||.+|++++++|+++|||||
T Consensus 182 L~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~-r~-------rtI~vV~qsd~~~~~r~~~~~~a~~iAEyfr 250 (450)
T PRK06002 182 LAMLARAD---AFDTVVIALVGERGREVREFLEDTLADN-LK-------KAVAVVATSDESPMMRRLAPLTATAIAEYFR 250 (450)
T ss_pred HHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHh-hC-------CeEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 98887642 3578899999999999999988653322 43 8999999999999999999999999999999
Q ss_pred HCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcC--CCCCceeEEEEEEecCCCCCCCccc
Q psy2896 238 DEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAS--TKKGSITSIQAVYVPADDLTDPSPA 315 (467)
Q Consensus 238 ~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~--~~~GSiT~~~tv~~~~~d~~dpi~~ 315 (467)
++|+|||+++||+||||+|+|||++++||||+++||||++|+.||+|+||||+ .++||||+||||++|+||++|||||
T Consensus 251 d~G~~Vll~~DslTr~A~A~rEisl~~ge~P~~~gyp~~vf~~l~~l~ERag~~~~~~GSIT~~~tvl~~~dd~~dpI~d 330 (450)
T PRK06002 251 DRGENVLLIVDSVTRFAHAAREVALAAGEPPVARGYPPSVFSELPRLLERAGPGAEGGGSITGIFSVLVDGDDHNDPVAD 330 (450)
T ss_pred HcCCCEEEeccchHHHHHHHHHHHHhcCCCCccccCCccHHHHhhHHHHHhccCCCCCeeeeEEEEEEecCCCCCCccHH
Confidence 99999999999999999999999999999999999999999999999999997 4589999999999999999999999
Q ss_pred ccccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCH-HHHH
Q psy2896 316 TTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSP-EDKL 394 (467)
Q Consensus 316 ~~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~-~~~~ 394 (467)
++++|+||||+|||+||++||||||||+.|+||+| +.+++++|++++.++|++|++|+|+++|+++++|+.++| +.++
T Consensus 331 ~~~~i~Dg~ivLsr~la~~g~~PAIDv~~S~SR~~-~~~~~~~~~~~a~~~r~~la~y~e~e~li~ig~y~~G~d~~~D~ 409 (450)
T PRK06002 331 SIRGTLDGHIVLDRAIAEQGRYPAVDPLASISRLA-RHAWTPEQRKLVSRLKSMIARFEETRDLRLIGGYRAGSDPDLDQ 409 (450)
T ss_pred HHHhhcceEEEEcHHHHhCCCCCccCCccccCccc-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCChHHHH
Confidence 99999999999999999999999999999999999 567789999999999999999999999999999999998 5678
Q ss_pred HHHHHHHHHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhcCC
Q psy2896 395 LVARARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISSGE 440 (467)
Q Consensus 395 ~~~~~~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~g~ 440 (467)
+++++++|++||+|+.+ ++++ ++++..|.+++.|.
T Consensus 410 ai~~~~~i~~fL~Q~~~----------~~~~-~~~~~~l~~~~~~~ 444 (450)
T PRK06002 410 AVDLVPRIYEALRQSPG----------DPPS-DDAFADLAAALKGA 444 (450)
T ss_pred HHHhHHHHHHHhCCCCC----------CCCC-HHHHHHHHHHHhhH
Confidence 99999999999999976 7889 99999999999984
No 39
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=100.00 E-value=5.5e-101 Score=802.89 Aligned_cols=411 Identities=31% Similarity=0.483 Sum_probs=386.5
Q ss_pred CceEEEEEcceEEEEecCCCcceeeeeeeee---CceEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecCC
Q psy2896 3 DGKIIQCIGSVVDVEFPHNMVPKIYNALKIE---NSELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVG 79 (467)
Q Consensus 3 ~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~---~~~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpvg 79 (467)
.|+|++|.|++++|.++++.++ ++|.+. ++.+.+||+++.+ +.+.++||++++||++|+.|..|+++++||+|
T Consensus 6 ~G~V~~v~g~~v~v~~~~~~~g---e~~~i~~~~~~~~~~eVi~~~~-~~~~l~~~~~~~gl~~G~~V~~tg~~~~v~vg 81 (422)
T TIGR02546 6 RGRVTEVSGTLLKAVLPGARVG---ELCLIRRRDPSQLLAEVVGFTG-DEALLSPLGELHGISPGSEVIPTGRPLSIRVG 81 (422)
T ss_pred eEEEEEEECcEEEEEECCCCCC---CEEEEeeCCCCeEEEEEEEEcC-CcEEEEEccCccCCCCCCEEEECCCCceEEeC
Confidence 6999999999999999876666 555564 3468999999875 67889999999999999999999999999999
Q ss_pred CCCcceEEEeecCcCCCCCCccccc--ccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhh
Q psy2896 80 KATLGRIINVLGDPIDEKGNISNKY--VSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVN 157 (467)
Q Consensus 80 ~~lLGRVld~lG~PiDg~~~~~~~~--~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L 157 (467)
++|||||+|++|+|||+.+++.... +||++.+||+|++|.++++|+.||+++||.++|+++||+++|+|++|+|||+|
T Consensus 82 ~~lLGrViD~~G~plD~~~~~~~~~~~~~pi~~~~~~~~~R~~i~~~l~tG~~~id~l~~i~~Gq~~~I~G~sG~GKStL 161 (422)
T TIGR02546 82 EALLGRVLDGFGRPLDGKGELPAGEIETRPLDADPPPPMSRQPIDQPLPTGVRAIDGLLTCGEGQRIGIFAGAGVGKSTL 161 (422)
T ss_pred hhhccCEeCCCCCcccCCCCCCCCCceeeeccCCCcCHHHccCcccccCCCceeehhhccccCCCEEEEECCCCCChHHH
Confidence 9999999999999999998876653 68999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy2896 158 MMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFR 237 (467)
Q Consensus 158 ~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr 237 (467)
+.+|+++. +++.+++++||||++|+.+|++.....+.++ ++++|++++|+|+.+|++++++|+++|||||
T Consensus 162 l~~I~~~~---~~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~-------~tvvv~~~s~~p~~~r~~~~~~a~~~AE~f~ 231 (422)
T TIGR02546 162 LGMIARGA---SADVNVIALIGERGREVREFIEHHLGEEGRK-------RSVLVVSTSDRPSLERLKAAYTATAIAEYFR 231 (422)
T ss_pred HHHHhCCC---CCCEEEEEEEccCCcCHHHHHHHHhcccccc-------ceEEEeccccCCHHHHHHHHHHHHHHHHHHH
Confidence 99888753 3588999999999999999999887766665 9999999999999999999999999999999
Q ss_pred HCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCCCCCceeEEEEEEecCCCCCCCccccc
Q psy2896 238 DEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQAVYVPADDLTDPSPATT 317 (467)
Q Consensus 238 ~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~~~GSiT~~~tv~~~~~d~~dpi~~~~ 317 (467)
++|+|||+++||+||||+|+|||++++||||+++||||++|+.|++|+||||+.++||||+||||++++||++|||||++
T Consensus 232 ~~g~~Vl~~~Dsltr~a~A~rei~l~~ge~P~~~gyp~~~f~~l~~l~ERag~~~~GSIT~~~tv~~~~dd~~~pi~~~~ 311 (422)
T TIGR02546 232 DQGKRVLLMMDSLTRFARALREIGLAAGEPPARGGYPPSVFSSLPRLLERAGNGEKGSITALYTVLVEGDDMNDPIADEV 311 (422)
T ss_pred HCCCcEEEEEeCchHHHHHHHHHHHhcCCCCcccccChhHHHHhHHHHHHhcCCCCCceeEEEEEeccCCCCCCCchhhh
Confidence 99999999999999999999999999999999999999999999999999999899999999999999999999999999
Q ss_pred ccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCH-HHHHHH
Q psy2896 318 FAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSP-EDKLLV 396 (467)
Q Consensus 318 ~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~-~~~~~~ 396 (467)
++|+||||+|||+||++||||||||+.|+||++ +.+++++|++++.++|++|++|+|+++++++++|+.+++ +.++++
T Consensus 312 ~~i~dg~i~Lsr~la~~g~yPAId~~~S~SR~~-~~~~~~~~~~~a~~~~~~l~~y~e~~~li~~g~y~~g~d~~~d~~i 390 (422)
T TIGR02546 312 RSILDGHIVLSRALAERNHYPAIDVLASLSRVM-SQVVSTEHRRAAGKLRRLLATYKEVELLIRLGEYQPGSDPETDDAI 390 (422)
T ss_pred hccccEEEEEcHHHHhCCCCCccCCccccccch-hhhCCHHHHHHHHHHHHHHHhhHHHHHHHHhcCCcCCCCHHHHHHH
Confidence 999999999999999999999999999999999 688899999999999999999999999999999987775 677899
Q ss_pred HHHHHHHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhc
Q psy2896 397 ARARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISS 438 (467)
Q Consensus 397 ~~~~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~ 438 (467)
.++++|++||+|+++ +++++++++..|++++.
T Consensus 391 ~~~~~i~~fl~Q~~~----------~~~~~~~~~~~l~~~~~ 422 (422)
T TIGR02546 391 DKIDAIRAFLRQSTD----------EYSPYEETLEQLHALVA 422 (422)
T ss_pred HhHHHHHHHhCCCCC----------CCCCHHHHHHHHHHHhC
Confidence 999999999999987 79999999999999863
No 40
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=100.00 E-value=5.8e-100 Score=797.01 Aligned_cols=411 Identities=32% Similarity=0.498 Sum_probs=384.4
Q ss_pred CceEEEEEcceEEEEecCCCcceeeeeeeee----CceEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecC
Q psy2896 3 DGKIIQCIGSVVDVEFPHNMVPKIYNALKIE----NSELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPV 78 (467)
Q Consensus 3 ~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~----~~~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpv 78 (467)
+|+|++|.|+++++.++. +.++++|++. ++...+||+++.+ +.+.++||++++||++|+.|.+|+++++||+
T Consensus 24 ~G~v~~i~G~~v~~~~~~---~~~ge~~~i~~~~~~~~~~~eVi~~~~-~~v~l~~~~~t~gl~~G~~V~~tg~~~~v~v 99 (440)
T TIGR01026 24 VGRVTKVKGLLIEAVGPQ---ASVGDLCLIERRGSEGRLVAEVVGFNG-EFVFLMPYEEVEGVRPGSKVLATGEGLSIKV 99 (440)
T ss_pred eeEEEEEEeeEEEEEcCC---CCcCCEEEEeecCCCCcEEEEEEEecC-CEEEEEEccCCcCCCCCCEEEeCCCccEEEc
Confidence 699999999999999986 3466777775 2248999999875 8999999999999999999999999999999
Q ss_pred CCCCcceEEEeecCcCCCCC-CcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhh
Q psy2896 79 GKATLGRIINVLGDPIDEKG-NISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVN 157 (467)
Q Consensus 79 g~~lLGRVld~lG~PiDg~~-~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L 157 (467)
|++|||||+|++|+|||+.+ ++.....+|++.+||+|++|.++++++.||+++||.++|+++|||++|||++|+|||+|
T Consensus 100 g~~llGRVid~~G~plD~~~~~~~~~~~~~i~~~~~~p~~R~~~~e~l~TGi~~iD~l~~i~~Gq~~~I~G~sG~GKStL 179 (440)
T TIGR01026 100 GDGLLGRVLDGLGKPIDGKGKFLDNVETEGLITAPINPLKRAPIREILSTGVRSIDGLLTVGKGQRIGIFAGSGVGKSTL 179 (440)
T ss_pred ChhhhhceecCCCcccCCCCCCCCCccccccccCCCChHHccCccccccceeeeeeeccccCCCcEEEEECCCCCCHHHH
Confidence 99999999999999999987 56555678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy2896 158 MMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFR 237 (467)
Q Consensus 158 ~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr 237 (467)
+.+|+++. +.++.+++++|+|++|+.+|+++....+.++ ++++|++|+|+||.+|++++++|+++|||||
T Consensus 180 l~~I~~~~---~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~-------~tvvv~~~~d~~p~~r~~~~~~a~t~AE~fr 249 (440)
T TIGR01026 180 LGMIARNT---EADVNVIALIGERGREVREFIEHDLGEEGLK-------RSVVVVATSDQSPLLRLKGAYVATAIAEYFR 249 (440)
T ss_pred HHHHhCCC---CCCEEEEEEEeecchHHHHHHHHHhcccccc-------eEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 98888753 3578899999999999999998875555455 9999999999999999999999999999999
Q ss_pred HCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCCCCCceeEEEEEEecCCCCCCCccccc
Q psy2896 238 DEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQAVYVPADDLTDPSPATT 317 (467)
Q Consensus 238 ~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~~~GSiT~~~tv~~~~~d~~dpi~~~~ 317 (467)
++|+|||+++||+||||+|+||||+++||||+++||||++|+.+++|+||+|..++||||+||||++++||++|||+|++
T Consensus 250 d~G~~Vll~~DslTr~A~A~REisl~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~dpi~d~~ 329 (440)
T TIGR01026 250 DQGKDVLLLMDSVTRFAMAQREIGLAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMNEPIADSV 329 (440)
T ss_pred HCCCCEEEEEeChHHHHHHHHHHHHhcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCCcchhhhh
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred ccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCH-HHHHHH
Q psy2896 318 FAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSP-EDKLLV 396 (467)
Q Consensus 318 ~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~-~~~~~~ 396 (467)
++|+||||+|||+||++||||||||+.|+||+| +.+++++|+++++++|++|++|+++++|+++++|..+++ +.+.++
T Consensus 330 ~~i~dG~ivLsr~la~~~~~PAId~~~S~SR~~-~~~~~~~~~~~a~~~r~~l~~y~e~~~li~ig~y~~g~d~~~d~~i 408 (440)
T TIGR01026 330 RGILDGHIVLSRALAQRGHYPAIDVLASISRLM-TAIVSEEHRRAARKFRELLSKYKDNEDLIRIGAYQRGSDRELDFAI 408 (440)
T ss_pred ccccceEEEEecchhhCCccCccCCCcccccCc-cccCCHHHHHHHHHHHHHHHhhHHHHHHHHhhccccCCCHHHHHHH
Confidence 999999999999999999999999999999999 788999999999999999999999999999999976664 677789
Q ss_pred HHHHHHHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhc
Q psy2896 397 ARARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISS 438 (467)
Q Consensus 397 ~~~~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~ 438 (467)
.++++|++||+|+++ ++++++++++.|.+++.
T Consensus 409 ~~~~~i~~fL~Q~~~----------~~~~~~~~~~~l~~~~~ 440 (440)
T TIGR01026 409 AKYPKLERFLKQGIN----------EKVNFEESLQQLEEIFR 440 (440)
T ss_pred HHHHHHHHHcCCCCC----------CCCCHHHHHHHHHHhhC
Confidence 999999999999987 79999999999999863
No 41
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=1.1e-97 Score=774.57 Aligned_cols=408 Identities=28% Similarity=0.389 Sum_probs=381.2
Q ss_pred CceEEEEEcceEEEEecCCCcceeeeeeeeeCceEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecCCCCC
Q psy2896 3 DGKIIQCIGSVVDVEFPHNMVPKIYNALKIENSELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKAT 82 (467)
Q Consensus 3 ~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~~~~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpvg~~l 82 (467)
+|+|++|.|.++++.|+.+.++ ++|++.++.+.+||+++.+ +.+.++||++++||++|+.|..|+++++||||++|
T Consensus 22 ~g~v~~~~g~~~~~~g~~~~ig---e~~~i~~~~~~~eV~~~~~-~~~~~~~~~~~~gi~~g~~v~~~~~~~~v~vg~~~ 97 (432)
T PRK06793 22 VGKVHSVQEQFFVAKGPKAKIG---DVCFVGEHNVLCEVIAIEK-ENNMLLPFEQTEKVCYGDSVTLIAEDVVIPRGNHL 97 (432)
T ss_pred eeEEEEEEEEEEEEEcCCCCcC---CEEEECCCCEEEEEEEecC-CcEEEEEccCccCCCCCCEEEECCCccEEEcCHhh
Confidence 6999999999999999986555 5556643358899999875 67789999999999999999999999999999999
Q ss_pred cceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhhHHHHH
Q psy2896 83 LGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELI 162 (467)
Q Consensus 83 LGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L~~~i~ 162 (467)
||||+|++|+|+|+.+++...+++|++.+||+|++|..+++++.||+|+||.++|+++|||++|||++|+|||+|+.+++
T Consensus 98 lGrV~d~~G~piD~~~~~~~~~~~~i~~~~~~~~~r~~i~~~l~TGiraID~ll~I~~Gqri~I~G~sG~GKTtLl~~Ia 177 (432)
T PRK06793 98 LGKVLSANGEVLNEEAENIPLQKIKLDAPPIHAFEREEITDVFETGIKSIDSMLTIGIGQKIGIFAGSGVGKSTLLGMIA 177 (432)
T ss_pred ccCEECcCCccCCCCCCCCCcccccccCCCCCchheechhhccCCCCEEEeccceecCCcEEEEECCCCCChHHHHHHHh
Confidence 99999999999999877665667899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCEEEEEEecCCchHHHHHHHH-HHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q psy2896 163 NNIAKAHSGLSVFTGVGERTREGNDFYHE-MIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGK 241 (467)
Q Consensus 163 ~~~~~~~~dv~V~~liGeR~~ev~e~~~~-~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g~ 241 (467)
.+.. .+..+++++|||++|+++|++. +.+.+ ++ ++++|++|+|+|+.+|++++++|+++|||||++|+
T Consensus 178 ~~~~---~~~gvI~~iGerg~ev~e~~~~~l~~~g-l~-------~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~ 246 (432)
T PRK06793 178 KNAK---ADINVISLVGERGREVKDFIRKELGEEG-MR-------KSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGN 246 (432)
T ss_pred ccCC---CCeEEEEeCCCCcccHHHHHHHHhhhcc-cc-------eeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8752 4778899999999999999885 44444 54 99999999999999999999999999999999999
Q ss_pred cEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCCCCCceeEEEEEEecCCCCCCCccccccccc
Q psy2896 242 DVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQAVYVPADDLTDPSPATTFAHL 321 (467)
Q Consensus 242 ~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~~~GSiT~~~tv~~~~~d~~dpi~~~~~~i~ 321 (467)
|||+++||+||||+|+|||++++||||+. |||+++|+.+++|+||||+.++||||++|||++|+||++|||||++++|+
T Consensus 247 ~VLlilDslTr~a~A~reisl~~~e~p~~-G~~~~~~s~l~~L~ERag~~~~GSiT~~~tvlv~~dD~~dpI~d~~~si~ 325 (432)
T PRK06793 247 NVLLMMDSVTRFADARRSVDIAVKELPIG-GKTLLMESYMKKLLERSGKTQKGSITGIYTVLVDGDDLNGPVPDLARGIL 325 (432)
T ss_pred cEEEEecchHHHHHHHHHHHHHhcCCCCC-CeeeeeeccchhHHHHhccCCCcceEEEEEEEecCCCCCCcchHHhhhhc
Confidence 99999999999999999999999999996 99999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCH-HHHHHHH-HH
Q psy2896 322 DSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSP-EDKLLVA-RA 399 (467)
Q Consensus 322 dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~-~~~~~~~-~~ 399 (467)
||||||||+||++||||||||+.|+||+| +.+++++|++++.++|++|++|+++|+++++++|.++++ +.++++. ++
T Consensus 326 DG~ivLsr~la~~g~~PAIDv~~S~SR~~-~~~~~~~~~~~a~~~r~~la~y~e~e~~i~~g~y~~g~~~~~d~ai~~~~ 404 (432)
T PRK06793 326 DGHIVLKRELATLSHYPAISVLDSVSRIM-EEIVSPNHWQLANEMRKILSIYKENELYFKLGTIQENAENAYIFECKNKV 404 (432)
T ss_pred ceEEEEcHHHHhCCCCCccCCCcccCcCc-cccCCHHHHHHHHHHHHHHHhChHHHHHHHhCCccCCCCHHHHHHHHHhH
Confidence 99999999999999999999999999999 688999999999999999999999999999999999987 6777999 99
Q ss_pred HHHHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhh
Q psy2896 400 RKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLIS 437 (467)
Q Consensus 400 ~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~ 437 (467)
++|++||+|+.+ ++++++++++.|.+++
T Consensus 405 ~~i~~fl~Q~~~----------~~~~~~~~~~~l~~~~ 432 (432)
T PRK06793 405 EGINTFLKQGRS----------DSFQFDDIVEAMHHIV 432 (432)
T ss_pred HHHHHHhCCCCC----------CCCCHHHHHHHHHhhC
Confidence 999999999977 7999999999998863
No 42
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=4.1e-97 Score=775.09 Aligned_cols=412 Identities=28% Similarity=0.440 Sum_probs=382.0
Q ss_pred CceEEEEEcceEEEEecCCCcceeeeeeeee---Cc--eEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeec
Q psy2896 3 DGKIIQCIGSVVDVEFPHNMVPKIYNALKIE---NS--ELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIP 77 (467)
Q Consensus 3 ~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~---~~--~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vp 77 (467)
+|+|++|.|+++++.|+.+.++ ++|.+. ++ .+.+||++|.+ +.+.++||++++||++|+.|.+|+++++||
T Consensus 19 ~G~v~~i~G~~i~~~~~~~~ig---e~~~i~~~~~~~~~~~~EVi~~~~-~~~~l~~~~~~~gl~~g~~V~~tg~~~~v~ 94 (438)
T PRK07721 19 YGKVSRVIGLMIESKGPESSIG---DVCYIHTKGGGDKAIKAEVVGFKD-EHVLLMPYTEVAEIAPGCLVEATGKPLEVK 94 (438)
T ss_pred ecEEEEEECcEEEEEECCCCch---heEEEEecCCCCceEEEEEEEEcC-CEEEEEEccCccCCCCCCEEEECCCccEEE
Confidence 7999999999999999875555 555563 22 58999999876 568899999999999999999999999999
Q ss_pred CCCCCcceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhh
Q psy2896 78 VGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVN 157 (467)
Q Consensus 78 vg~~lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L 157 (467)
||++|||||+|++|+|||+.+......++|++.+||+|.+|.++++++.||+++||.++++++||+++|+|++|+|||+|
T Consensus 95 vg~~llGRv~d~~G~plD~~~~~~~~~~~~i~~~~p~p~~R~~i~~~l~tg~~vid~l~~i~~Gq~i~I~G~sG~GKStL 174 (438)
T PRK07721 95 VGSGLIGQVLDALGEPLDGSALPKGLAPVSTDQDPPNPLKRPPIREPMEVGVRAIDSLLTVGKGQRVGIFAGSGVGKSTL 174 (438)
T ss_pred echhhcCCEECcCCCccCCCCCCCccccCCccCCCCChhhccCcccccccchhhhheeeeecCCcEEEEECCCCCCHHHH
Confidence 99999999999999999998644444568999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy2896 158 MMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFR 237 (467)
Q Consensus 158 ~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr 237 (467)
+.+|+... ..+..+++++|||++|+++|+++......+. ++++|++|+|+||.+|++++|+|+++|||||
T Consensus 175 l~~I~~~~---~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~-------r~v~vv~~~~~~~~~r~~~~~~a~~iAEyfr 244 (438)
T PRK07721 175 MGMIARNT---SADLNVIALIGERGREVREFIERDLGPEGLK-------RSIVVVATSDQPALMRIKGAYTATAIAEYFR 244 (438)
T ss_pred HHHHhccc---CCCeEEEEEEecCCccHHHHHHhhcChhhhc-------CeEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 98887753 3477899999999999999998743333344 9999999999999999999999999999999
Q ss_pred HCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCCCCCceeEEEEEEecCCCCCCCccccc
Q psy2896 238 DEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQAVYVPADDLTDPSPATT 317 (467)
Q Consensus 238 ~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~~~GSiT~~~tv~~~~~d~~dpi~~~~ 317 (467)
|+|+|||+++||+||||+|+||||+++||||+++||||++|+.+++++||+++.++||||+|+||+++++|+++|++|++
T Consensus 245 ~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e~i~d~v 324 (438)
T PRK07721 245 DQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNEPIADTV 324 (438)
T ss_pred HCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCchhhhhE
Confidence 99999999999999999999999999999999999999999999999999997678999999999999999999999999
Q ss_pred ccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCH-HHHHHH
Q psy2896 318 FAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSP-EDKLLV 396 (467)
Q Consensus 318 ~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~-~~~~~~ 396 (467)
++++||||+||++|+++||||||||+.|+||++ +.+++++|+++|.++|++|++|+++++++++++|.++++ +.+.++
T Consensus 325 ~~i~dG~Ivls~~la~~g~~PAIdv~~S~SR~~-~~~~~~~~~~~a~~~r~~l~~y~e~~~li~~g~y~~g~~~~~d~a~ 403 (438)
T PRK07721 325 RGILDGHFVLDRQLANKGQYPAINVLKSVSRVM-NHIVSPEHKEAANRFRELLSTYQNSEDLINIGAYKRGSSREIDEAI 403 (438)
T ss_pred EEecCEEEEEeccHHHCCCCCccCCcccccccc-cccCCHHHHHHHHHHHHHHHHhHHHHHHHHhhCCcCCCCHHHHHHH
Confidence 999999999999999999999999999999999 578999999999999999999999999999999999985 777899
Q ss_pred HHHHHHHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhcC
Q psy2896 397 ARARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISSG 439 (467)
Q Consensus 397 ~~~~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~g 439 (467)
+++++|++||+|+++ ++.++++++..|++++..
T Consensus 404 ~~~~~~~~fl~Q~~~----------~~~~~~~~~~~l~~~~~~ 436 (438)
T PRK07721 404 QFYPQIISFLKQGTD----------EKATFEESIQALLSLFGK 436 (438)
T ss_pred HhHHHHHHHhCCCCC----------CCCCHHHHHHHHHHHHhc
Confidence 999999999999987 799999999999999853
No 43
>PRK06315 type III secretion system ATPase; Provisional
Probab=100.00 E-value=3.5e-97 Score=772.57 Aligned_cols=412 Identities=30% Similarity=0.463 Sum_probs=383.5
Q ss_pred CceEEEEEcceEEEEecCCCcceeeeeeeee-Cc--eEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecCC
Q psy2896 3 DGKIIQCIGSVVDVEFPHNMVPKIYNALKIE-NS--ELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVG 79 (467)
Q Consensus 3 ~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~-~~--~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpvg 79 (467)
+|||++|.|+++++.|+.+. +|+.|+|. ++ ...+||+++.+ +.+.++||+++.||++|+.|..++++++||||
T Consensus 24 ~G~v~~i~g~~~~~~~~~~~---~ge~~~i~~~~~~~~~~eVv~~~~-~~~~l~~~~~~~gi~~g~~V~~~g~~~~v~vg 99 (442)
T PRK06315 24 VGRITEVVGMLIKAVVPDVR---VGEVCLVKRHGMEPLVTEVVGFTQ-NFVFLSPLGELTGVSPSSEVIPTGLPLHIRAG 99 (442)
T ss_pred ccEEEEEECCEEEEEECCcc---cCCEEEEecCCCCEEEEEEEEEcC-CeEEEEEccCCcCCCCCCEEEeCCCccEEEec
Confidence 69999999999999998744 55666674 22 58999999865 88999999999999999999999999999999
Q ss_pred CCCcceEEEeecCcCCC--CCCcc-cccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchh
Q psy2896 80 KATLGRIINVLGDPIDE--KGNIS-NKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTV 156 (467)
Q Consensus 80 ~~lLGRVld~lG~PiDg--~~~~~-~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~ 156 (467)
++|||||+|++|+|||+ .+++. ..+++|++..||+|++|.++++|+.||||+||.++|+++|||++|||++|+|||+
T Consensus 100 ~~llGrv~d~~G~pld~~~~~~~~~~~~~~~i~~~~~~~~~R~~~~e~l~TGi~aID~~l~i~~Gq~i~I~G~sG~GKSt 179 (442)
T PRK06315 100 NGLLGRVLNGLGEPIDTETKGPLENVDETYPIFRAPPDPLHRAKLRTILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSS 179 (442)
T ss_pred ccccCCEEeccCcccccccCCCcccccceeeeecCCCChHHcccccccccceEEEEeccccccCCcEEEEECCCCCCcch
Confidence 99999999999999998 66654 4467899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q psy2896 157 NMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGF 236 (467)
Q Consensus 157 L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~f 236 (467)
|+.+|++++.. .++.|+++||||++|+.+|.+.......+ +++++|++|+++||.+|+.++++|+++||||
T Consensus 180 Ll~~I~~~~~~--~~~~vi~liGerg~ev~~~~~~~l~~~g~-------~~svvvvats~q~p~~rlnp~~va~~IAE~~ 250 (442)
T PRK06315 180 LLGMIARNAEE--ADVNVIALIGERGREVREFIEGDLGEEGM-------KRSVIVVSTSDQSSQLRLNAAYVGTAIAEYF 250 (442)
T ss_pred HHHHhhccccc--CCceEEEEECCCchHHHHHHHHHHHhcCC-------ceEEEEEeCCCCCHHHHhhHHHHHHHHHHHH
Confidence 99999986522 36688999999999999999874332223 4999999999999999999999999999999
Q ss_pred HHCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCCCCCceeEEEEEEecCCCCCCCcccc
Q psy2896 237 RDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQAVYVPADDLTDPSPAT 316 (467)
Q Consensus 237 r~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~~~GSiT~~~tv~~~~~d~~dpi~~~ 316 (467)
|++|++||+++||+||||+|+||+++++||||.+++|||++||.||+|+||||+.++||||+||||++++||++|||||+
T Consensus 251 r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS~l~~llERag~~~~GSITai~tVl~~gdD~~dpi~d~ 330 (442)
T PRK06315 251 RDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERSGASDKGTITAFYTVLVAGDDMNEPVADE 330 (442)
T ss_pred HHcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhhHhHHHHHHhcCCCCcceeeeEEEEecCCCCCcccHHH
Confidence 99999999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred cccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCH-HHHHH
Q psy2896 317 TFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSP-EDKLL 395 (467)
Q Consensus 317 ~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~-~~~~~ 395 (467)
+++|+||||+|||+||++||||||||+.|+||+| +.+++++|++++.++|++|++|+++|+++++++|++++| +++++
T Consensus 331 ~~~i~dg~ivLsr~la~~g~~Paidv~~S~SR~~-~~~~~~~~~~~a~~~r~~l~~y~e~e~li~~g~y~~g~d~~~d~a 409 (442)
T PRK06315 331 VKSILDGHIVLSNALAQAYHYPAIDVLASISRLL-TAIVPEEQRRIIGKAREVLAKYKANEMLIRIGEYRRGSDREVDFA 409 (442)
T ss_pred hhhhcceEEEEeccHHHcCCCCCccchhhhcccc-hhcCCHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcCCCCHHHHHH
Confidence 9999999999999999999999999999999999 688899999999999999999999999999999999997 88999
Q ss_pred HHHHHHHHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhc
Q psy2896 396 VARARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISS 438 (467)
Q Consensus 396 ~~~~~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~ 438 (467)
++++++|++||+|+++ ++++++++++.|.+++.
T Consensus 410 i~~~~~i~~fL~Q~~~----------e~~~~~~~~~~l~~~~~ 442 (442)
T PRK06315 410 IDHIDKLNRFLKQDIH----------EKTNYEEAAQQLRAIFR 442 (442)
T ss_pred HHHHHHHHHHhCCCCC----------CCCCHHHHHHHHHHHhC
Confidence 9999999999999987 89999999999998863
No 44
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=1.2e-92 Score=717.80 Aligned_cols=423 Identities=25% Similarity=0.372 Sum_probs=396.1
Q ss_pred CCceEEEEEcceEEEEecCCCcceeeeeeeeeCceEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecCCCC
Q psy2896 2 SDGKIIQCIGSVVDVEFPHNMVPKIYNALKIENSELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKA 81 (467)
Q Consensus 2 ~~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~~~~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpvg~~ 81 (467)
+.|+|++|...++++.|.. -...++++++.+ ++.+- +..++++.|.+..+++...|+.|+.|++|++.+.||||++
T Consensus 27 ~~g~V~sv~DgIa~v~Gl~--~~~~~E~~ef~~-~v~G~-alnle~d~VG~vi~g~~~~i~eG~~v~~Tg~i~~Vpvg~~ 102 (504)
T COG0056 27 EVGTVISVGDGIARVSGLE--NVMAGELVEFPG-GVKGM-ALNLEEDSVGAVILGDYSDIKEGDEVKRTGRILEVPVGEE 102 (504)
T ss_pred ccceEEEEecceEEEecCc--hhhcCceEEecC-CcEEE-EEeccccceeEEEecCCccccCCcEEEeeCceEEEecchh
Confidence 4799999999999999975 344567777864 24433 3446789999999999999999999999999999999999
Q ss_pred CcceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhhHHHH
Q psy2896 82 TLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMEL 161 (467)
Q Consensus 82 lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L~~~i 161 (467)
|+|||+|++|+|+||++++....++|++..+|..++|+++++|++|||++||+|+|||||||.+|+|+.++|||.++.+.
T Consensus 103 llGRVVn~lG~pidgkg~i~~~~~~~~e~~Apgv~~RksV~ePlqTGikaIDamiPIGRGQRELIIGDRQTGKTaIAidt 182 (504)
T COG0056 103 LLGRVVDALGNPIDGKGPIDATKTRPVEKKAPGVMDRKSVNEPLQTGIKAIDALIPIGRGQRELIIGDRQTGKTAIAIDT 182 (504)
T ss_pred hcceeecCCCCccCCCCCccccccCccccccCceecccccCchhhhhhHHHhhhcccCCCceEEEeccCcCCcchhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q psy2896 162 INNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGK 241 (467)
Q Consensus 162 ~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g~ 241 (467)
+.|+. +.+-.|||+.||++.+.++.+++.++++|+|+ +|+||++++++|+..+|++||++|++||||+++|+
T Consensus 183 IiNQk-~~~v~CIYVAIGQK~stva~vv~tL~e~gAmd-------yTiVV~AsASd~a~lqYLaPy~g~a~aE~f~~~G~ 254 (504)
T COG0056 183 IINQK-GSGVKCIYVAIGQKRSTVANVVRTLEEHGAMD-------YTIVVAASASDSAPLQYLAPYAGCAMAEYFRDNGK 254 (504)
T ss_pred HHhcc-cCCcEEEEEEcccchHHHHHHHHHHHHcCCcc-------ceEEEEecCCcchhhhhhhhhhhhHHHHHHHhcCC
Confidence 99985 34456999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred cEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcC----CCCCceeEEEEEEecCCCCCCCccccc
Q psy2896 242 DVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAS----TKKGSITSIQAVYVPADDLTDPSPATT 317 (467)
Q Consensus 242 ~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~----~~~GSiT~~~tv~~~~~d~~dpi~~~~ 317 (467)
|||+++||+|++|.|||||||+++|||+|++|||++|+.|+||+|||++ .++||||++|.+.+.++|++.+||+|+
T Consensus 255 dvLIVyDDLsKhA~AYReiSLLlrRPPGREAyPGDVFYlHSrLLERAakl~~e~g~GSiTALPIIETqagDvSAyIpTNV 334 (504)
T COG0056 255 DVLIVYDDLSKHAVAYREISLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDELGGGSITALPIIETQAGDVSAYIPTNV 334 (504)
T ss_pred eEEEEecCchHHHHHHHHHHHHhcCCCCccCCCCceeehhHHHHHHHHhhccccCCCceEeeeeEEeccCceeeecccce
Confidence 9999999999999999999999999999999999999999999999996 368999999999999999999999999
Q ss_pred ccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q psy2896 318 FAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVA 397 (467)
Q Consensus 318 ~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~~~~~~~~ 397 (467)
+||+||||+|+.+|+++|+.||||+..|+||+++ ....+..++++..+|..|++|+|++.+.+ +|. ++.++++..++
T Consensus 335 ISITDGQIfl~t~LFn~G~rPAInvGlSVSRvGs-sAQ~kamkkvag~lrl~laqYrel~afsq-f~s-dLd~~T~~~l~ 411 (504)
T COG0056 335 ISITDGQIFLETDLFNAGIRPAINVGLSVSRVGS-AAQIKAMKKVAGSLRLILAQYRELEAFSQ-FGS-DLDKATRKQLE 411 (504)
T ss_pred EEecCCcEEeehhhhhcCCCccccCCceeeccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcc-hhCHHHHHHHH
Confidence 9999999999999999999999999999999985 44568999999999999999999999755 676 68899999999
Q ss_pred HHHHHHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhcCCCCCCchhhh
Q psy2896 398 RARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISSGELDNIPEQAF 449 (467)
Q Consensus 398 ~~~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~g~~d~~~~~~~ 449 (467)
+++++.+.|+|+.+ .+.+.++.+-.++.+..|++|++|.+..
T Consensus 412 ~G~r~~ellkQ~~~----------~p~sv~~qv~ilya~~~G~ld~v~v~~v 453 (504)
T COG0056 412 RGKRLTELLKQPQY----------SPLSVEEQVLILYAGTNGYLDDVPVEKV 453 (504)
T ss_pred ccHHHHHHhcCCCC----------CCccHHHHHHHHHHHhcCcccCCcHHHH
Confidence 99999999999988 7999999999999999999999997543
No 45
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=100.00 E-value=2.8e-91 Score=686.54 Aligned_cols=270 Identities=29% Similarity=0.437 Sum_probs=258.9
Q ss_pred ceeecCCCCCcceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCC
Q psy2896 73 PIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGV 152 (467)
Q Consensus 73 ~~~vpvg~~lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~ 152 (467)
+++||||++|||||+|++|+|||+.+++...+++|++.++|++++|.++++||+||||+||+|+|||||||++|||++|+
T Consensus 1 ~~~Vpvg~~lLGRVvd~lG~piD~~~~~~~~~~~~i~~~ap~~~~R~~i~e~l~TGIkaID~l~pig~GQR~gIfgg~Gv 80 (276)
T cd01135 1 TLKVPVSEDMLGRIFNGSGKPIDGGPEILAEEYLDINGPPINPVARIYPEEMIQTGISAIDGMNTLVRGQKIPIFSGSGL 80 (276)
T ss_pred CcEEECChhhcCCEECCCCCCCCCCCCCCCCceeeccCCCcCchhcCCcccccccCcEeeecccccccCCEEEeecCCCC
Confidence 46899999999999999999999998876677889999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHH---hhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHH
Q psy2896 153 GKTVNMMELINNIA---KAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTG 229 (467)
Q Consensus 153 GKt~L~~~i~~~~~---~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a 229 (467)
|||+|+.||+++.. +.+.++|||++||||++|++||++++.+.++++ ||++|++|+|+||.+|++++|+|
T Consensus 81 GKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~-------~tv~v~~t~~~~~~~r~~a~~~a 153 (276)
T cd01135 81 PHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALE-------RVVLFLNLANDPTIERIITPRMA 153 (276)
T ss_pred ChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcc-------eEEEEEecCCCCHHHHHHHHHHH
Confidence 99999999998753 122589999999999999999999999998887 99999999999999999999999
Q ss_pred HHHHHHHHHC-CCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCC--CCCceeEEEEEEecC
Q psy2896 230 LTIAEGFRDE-GKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAST--KKGSITSIQAVYVPA 306 (467)
Q Consensus 230 ~~~AE~fr~~-g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~--~~GSiT~~~tv~~~~ 306 (467)
+++|||||++ |+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+. ++||||+||+|++++
T Consensus 154 ~aiAEyfrd~~g~~VLl~~D~ltr~A~A~rEisl~~gepP~~~gyp~~vf~~~~~l~ERag~~~~~~GSITa~~~V~~~~ 233 (276)
T cd01135 154 LTTAEYLAYEKGKHVLVILTDMTNYAEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRVEGRNGSITQIPILTMPN 233 (276)
T ss_pred HHHHHHHHhccCCeEEEEEcChhHHHHHHHHHHhccCCCCCccCcCccHHHHhhHHheecccCCCCCeeEEEEEEEEccC
Confidence 9999999998 9999999999999999999999999999999999999999999999999985 479999999999999
Q ss_pred CCCCCCcccccccccceEEEeehhhhhcCCCCcccCCCCCcCC
Q psy2896 307 DDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQ 349 (467)
Q Consensus 307 ~d~~dpi~~~~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~ 349 (467)
||++|||||++++|+||||+|||+||++||||||||+.|+||+
T Consensus 234 dD~~dpi~~~~~si~DG~ivLsr~la~~g~~PAID~l~S~SR~ 276 (276)
T cd01135 234 DDITHPIPDLTGYITEGQIVLDRQLHNRGIYPPINVLPSLSRL 276 (276)
T ss_pred CCcCcchHHHHHhhcceEEEEcHHHHhCCCCCCcCCcccccCC
Confidence 9999999999999999999999999999999999999999996
No 46
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=100.00 E-value=9.8e-91 Score=684.19 Aligned_cols=272 Identities=76% Similarity=1.167 Sum_probs=265.5
Q ss_pred ceeecCCCCCcceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCC
Q psy2896 73 PIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGV 152 (467)
Q Consensus 73 ~~~vpvg~~lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~ 152 (467)
+++||||++|||||+|++|+|+|+.+++...++||+++++|++++|.+++++|.||||+||+|+|||||||++|||++|+
T Consensus 1 ~~~vpvg~~llGRv~d~~G~piD~~~~~~~~~~~~i~~~~p~~~~R~~~~e~L~TGIr~ID~l~pig~GQr~~If~~~G~ 80 (274)
T cd01133 1 PISVPVGPETLGRIFNVLGEPIDERGPIKTKKTWPIHREAPEFVEQSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGV 80 (274)
T ss_pred CcEEecChhhcCCEECCCCCccCCCCCCCccccccccCCCCCchhhcCcCcccccCceeeeccCCcccCCEEEEecCCCC
Confidence 47899999999999999999999998887778899999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy2896 153 GKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTI 232 (467)
Q Consensus 153 GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~ 232 (467)
|||+|+.++++++++++.++|||++||||++|++||++++.+.++++ ||++|++|+|+||.+|++++|+|+++
T Consensus 81 GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~-------~tvvv~~t~d~~~~~r~~~~~~a~~~ 153 (274)
T cd01133 81 GKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLS-------KTALVYGQMNEPPGARARVALTGLTM 153 (274)
T ss_pred ChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcc-------eeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 99999999999998877899999999999999999999999988887 99999999999999999999999999
Q ss_pred HHHHHHC-CCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCCCCCceeEEEEEEecCCCCCC
Q psy2896 233 AEGFRDE-GKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQAVYVPADDLTD 311 (467)
Q Consensus 233 AE~fr~~-g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~~~GSiT~~~tv~~~~~d~~d 311 (467)
|||||++ |+|||+++||+||||+|+||+++++||||+++||||++|+.|++|+||||+.++||||+||||++++||++|
T Consensus 154 AEyfr~~~g~~Vl~~~Dsltr~a~A~reis~~~ge~p~~~gyp~~~f~~~~~l~ERag~~~~GSiT~~~~v~~~~dD~~d 233 (274)
T cd01133 154 AEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGALQERITSTKKGSITSVQAVYVPADDLTD 233 (274)
T ss_pred HHHHHHhcCCeEEEEEeChhHHHHHHHHHHHHcCCCCCCcCcCccHHHHHHHHHHHhcCCCCcccceEEEEEecCCCCCC
Confidence 9999999 999999999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred CcccccccccceEEEeehhhhhcCCCCcccCCCCCcCCcC
Q psy2896 312 PSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLD 351 (467)
Q Consensus 312 pi~~~~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~ 351 (467)
||||++++|+||||+|||+||++||||||||+.|+||+|+
T Consensus 234 pi~~~~~~i~dg~ivLsr~la~~g~~PAId~~~S~SR~~~ 273 (274)
T cd01133 234 PAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRILD 273 (274)
T ss_pred chHHHHHHhcceEEEEcHHHHhCCCCCCcCCccchhcccC
Confidence 9999999999999999999999999999999999999984
No 47
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=100.00 E-value=5.3e-90 Score=695.86 Aligned_cols=325 Identities=34% Similarity=0.562 Sum_probs=311.5
Q ss_pred ceeecCCCCCcceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCC
Q psy2896 73 PIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGV 152 (467)
Q Consensus 73 ~~~vpvg~~lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~ 152 (467)
+++||||++|||||+|++|+|||+.+++...++||++.++|+|++|.++++++.||+++||.++|+++|||++|||++|+
T Consensus 1 ~~~v~vg~~~lGrv~d~~G~pid~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~tGi~aiD~l~~i~~Gqri~I~G~sG~ 80 (326)
T cd01136 1 PLSVPVGDALLGRVLDAFGEPLDGKGPLGKEVRYPLLRTPPNPLKRRPIDEVLPTGVRAIDGLLTVGKGQRLGIFAGSGV 80 (326)
T ss_pred CceeeCCcccccCEECCCCcccCCCCCCCCCccccccCCCcCHHHhccceeEcCCCcEEEeeeeEEcCCcEEEEECCCCC
Confidence 46899999999999999999999998877777899999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy2896 153 GKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTI 232 (467)
Q Consensus 153 GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~ 232 (467)
|||+|+.+|+++. +.+++++++||||++|+++|++.....+.++ |+++|++|+|+||.+|++++++|+++
T Consensus 81 GKTtLl~~Ia~~~---~~~~~vi~~iGer~~ev~~~~~~~~~~~~l~-------rtvvv~~t~d~~~~~r~~~~~~a~~~ 150 (326)
T cd01136 81 GKSTLLGMIARGT---TADVNVIALIGERGREVREFIEKDLGEEGLK-------RSVVVVATSDESPLLRVKAAYTATAI 150 (326)
T ss_pred ChHHHHHHHhCCC---CCCEEEEEEEecCCccHHHHHHHHHhcCccc-------eEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 9999999888753 3578999999999999999999887776676 99999999999999999999999999
Q ss_pred HHHHHHCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCCCCCceeEEEEEEecCCCCCCC
Q psy2896 233 AEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQAVYVPADDLTDP 312 (467)
Q Consensus 233 AE~fr~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~~~GSiT~~~tv~~~~~d~~dp 312 (467)
|||||++|+|||+++||+||||+|+||+++++||||+++||||++|+.+++|+||||+.++||||+|+||++|+||++||
T Consensus 151 AEyfr~~g~~Vll~~Dsltr~a~A~rei~~~~ge~p~~~gyp~~~~~~~~~l~ERag~~~~GSIT~i~tv~~~gdd~~dp 230 (326)
T cd01136 151 AEYFRDQGKDVLLLMDSLTRFAMAQREIGLAAGEPPTTKGYPPSVFALLPRLLERAGNSDKGSITAFYTVLVEGDDLNEP 230 (326)
T ss_pred HHHHHHcCCCeEEEeccchHHHHHHHHHHHhcCCCCCcCCcChHHHHHhHHHHHHhcCCCCCCeeeeeeeeecCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred cccccccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCH-H
Q psy2896 313 SPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSP-E 391 (467)
Q Consensus 313 i~~~~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~-~ 391 (467)
|||++++|+||||+|||+||++||||||||+.|+||++ +.+++++|++++.++|++|++|+|+++++++++|+.+.| +
T Consensus 231 i~~~~~~~~dg~ivL~r~la~~g~~PAid~~~S~SR~~-~~~~~~~~~~~a~~~r~~l~~y~e~~~~i~~g~y~~g~d~~ 309 (326)
T cd01136 231 IADAVRSILDGHIVLSRALAAAGHYPAIDVLKSISRLM-NAVVTPEHKEAARKLRELLSAYQEVEDLIRIGAYKKGSDPE 309 (326)
T ss_pred hHHhhhhccceEEEEcCcHHHcCCCCCcccccccccCc-cccCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCCHH
Confidence 99999999999999999999999999999999999998 678999999999999999999999999999999988876 6
Q ss_pred HHHHHHHHHHHHHHhcC
Q psy2896 392 DKLLVARARKMQRFLSQ 408 (467)
Q Consensus 392 ~~~~~~~~~~i~~fl~Q 408 (467)
.+++++++++|++||+|
T Consensus 310 ~d~~i~~~~~i~~~l~Q 326 (326)
T cd01136 310 VDEAIKLLPKIEAFLKQ 326 (326)
T ss_pred HHHHHHhHHHHHHHhCC
Confidence 77799999999999999
No 48
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=100.00 E-value=2.6e-87 Score=753.45 Aligned_cols=262 Identities=28% Similarity=0.399 Sum_probs=239.6
Q ss_pred CCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEe
Q psy2896 169 HSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFID 248 (467)
Q Consensus 169 ~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~D 248 (467)
+.|+|||++||||++|++||++++.+...-..-.+.|+||++|++|||+|+++|++++|+|+|+||||||+|+|||+++|
T Consensus 681 ~adi~V~~~iGERg~Ev~e~l~~~~~l~~~~~g~~~m~rtvlv~~ts~~p~~~R~~s~y~a~tiAEyfrd~G~~Vll~~D 760 (1017)
T PRK14698 681 DAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMAD 760 (1017)
T ss_pred CCCEEEEEeeccchHHHHHHHHHHHhhcccccCccccccEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEec
Confidence 35899999999999999999999966321111124455999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCC-------CCCceeEEEEEEecCCCCCCCccccccccc
Q psy2896 249 NIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAST-------KKGSITSIQAVYVPADDLTDPSPATTFAHL 321 (467)
Q Consensus 249 s~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~-------~~GSiT~~~tv~~~~~d~~dpi~~~~~~i~ 321 (467)
|+||||+|+||||+++||||+++|||||+|++||+||||||+. ++||||++++|++|+||++||||+++++|+
T Consensus 761 s~sR~A~A~REis~~l~e~P~~~gyP~~l~s~L~~~~ERaG~~~~l~~~~~~GSIT~i~~V~~~g~D~s~Pv~~~~~~i~ 840 (1017)
T PRK14698 761 STSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVV 840 (1017)
T ss_pred cchHHHHHHHHHHHhcCCCCCCCCcCccHHHHHHHHHHhccCCcccCCCCCCcceEEEEEEECCCCCCCCcHHHHHHHHh
Confidence 9999999999999999999999999999999999999999963 679999999999999999999999999999
Q ss_pred ceEEEeehhhhhcCCCCcccCCCCCcCCcCCcc-------ccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHH
Q psy2896 322 DSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLI-------VGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKL 394 (467)
Q Consensus 322 dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~-------~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~~~~~ 394 (467)
||||+|||+||++||||||||+.|+||+|+ .+ ++++|.+++++++++|++|+|++++++++|.+.+++.|+.
T Consensus 841 dg~i~L~~~La~~g~~PAId~l~S~Sr~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~el~~~i~l~g~~~l~~~d~~ 919 (1017)
T PRK14698 841 KVFWALDADLARRRHFPAINWLTSYSLYVD-AVKDWWHKNVDPEWKAMRDKAMELLQKEAELQEIVRIVGPDALPERERA 919 (1017)
T ss_pred CcEEecCHHHHhCCCCCCcCcccchhhhcc-cccchhccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHH
Confidence 999999999999999999999999999994 55 6899999999999999999999999999998889999999
Q ss_pred HHHHHHHHH-HHhcCCCcccceeccCCCeeecHHHHHHHHHHhh
Q psy2896 395 LVARARKMQ-RFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLIS 437 (467)
Q Consensus 395 ~~~~~~~i~-~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~ 437 (467)
.+.+++.|+ .||+|+.+.+ .++++++++++..|..|+
T Consensus 920 ~~~~~~~i~e~fL~Q~~~~~------~d~~~~~~~~~~~l~~i~ 957 (1017)
T PRK14698 920 ILLVARMLREDYLQQDAFDE------VDTYCPPEKQVTMMRVLL 957 (1017)
T ss_pred HHHHhHHHHhccCCCCCCCc------cccCCCHHHHHHHHHHHH
Confidence 999999996 7999998632 147799999999987775
No 49
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=100.00 E-value=3.4e-88 Score=664.82 Aligned_cols=269 Identities=28% Similarity=0.407 Sum_probs=254.0
Q ss_pred eeecCCCCCcceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCC
Q psy2896 74 IMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVG 153 (467)
Q Consensus 74 ~~vpvg~~lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~G 153 (467)
++||||++|||||+|++|+|||+.+++...++||++.++|++++|.+++++|.||||+||+|+|||||||++|||++|+|
T Consensus 2 ~~vpvg~~lLGRvld~~G~piD~~~~~~~~~~~~i~~~~p~~~~R~~i~e~L~TGI~~ID~l~pigrGQr~~Ifg~~g~G 81 (274)
T cd01132 2 ADVPVGEALLGRVVDALGNPIDGKGPIETKERRPIESKAPGIIPRKSVNEPLQTGIKAIDAMIPIGRGQRELIIGDRQTG 81 (274)
T ss_pred eEEECCHhhCCCEEccCCCCccCCCCcCcCceeeccCCCCChhhcCCcccccccCCEEeeccCCcccCCEEEeeCCCCCC
Confidence 68999999999999999999999988877788999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHH
Q psy2896 154 KTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIA 233 (467)
Q Consensus 154 Kt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~A 233 (467)
||+|+.+++.+++ +.+.+|||++||||++|++||++++.+.++++ |+++|++|+|+||.+|++++|+|+++|
T Consensus 82 Kt~L~l~~i~~~~-~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~-------~tvvv~~t~d~~~~~r~~a~~~a~aiA 153 (274)
T cd01132 82 KTAIAIDTIINQK-GKKVYCIYVAIGQKASTVAQVVKTLEEHGAME-------YTIVVAATASDPAPLQYLAPYTGCAMG 153 (274)
T ss_pred ccHHHHHHHHHhc-CCCeEEEEEecccchHHHHHHHHHHHhcCccc-------eeEEEEeCCCCchhHHHHHHHHHHHHH
Confidence 9999544443333 22344699999999999999999999988887 999999999999999999999999999
Q ss_pred HHHHHCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCC----CCCceeEEEEEEecCCCC
Q psy2896 234 EGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAST----KKGSITSIQAVYVPADDL 309 (467)
Q Consensus 234 E~fr~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~----~~GSiT~~~tv~~~~~d~ 309 (467)
||||++|+||||++||+||||+|+||||+++||||+++||||++|+.+++|+||||+. ++||||+||+|++|+||+
T Consensus 154 E~fr~~G~~Vlvl~DslTr~A~A~rEisl~~ge~P~~~gYp~~~f~~~~~L~ERag~~~~~~~~GSIT~i~~V~~~~dD~ 233 (274)
T cd01132 154 EYFMDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNDELGGGSLTALPIIETQAGDV 233 (274)
T ss_pred HHHHHCCCCEEEEEcChHHHHHHHHHHHHhcCCCCCCcCcCchHHHHhHHHHHHhhhccCCCCCcceEEEEEEEcCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999964 589999999999999999
Q ss_pred CCCcccccccccceEEEeehhhhhcCCCCcccCCCCCcCCc
Q psy2896 310 TDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQL 350 (467)
Q Consensus 310 ~dpi~~~~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~ 350 (467)
+|||||++++|+||||+|||+||++||||||||+.|+||+.
T Consensus 234 ~~pi~~~~~~i~dg~ivLsr~la~~g~yPaId~l~S~SR~g 274 (274)
T cd01132 234 SAYIPTNVISITDGQIFLETDLFNKGIRPAINVGLSVSRVG 274 (274)
T ss_pred CcchHHHHHhhcCeEEEEcHHHHhCCCCCCcCCcccccCCC
Confidence 99999999999999999999999999999999999999974
No 50
>COG1156 NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]
Probab=100.00 E-value=7.6e-81 Score=625.29 Aligned_cols=433 Identities=26% Similarity=0.351 Sum_probs=400.7
Q ss_pred CceEEEEEcceEEEEecCCCcceeeeeeeee---CceEEEEEEEEecCcEEEEEEcCCCcCCCCCce-EEecCCceeecC
Q psy2896 3 DGKIIQCIGSVVDVEFPHNMVPKIYNALKIE---NSELTLEVQQQLGDGIVRTIVLGTSEGLRRGTI-VKNTGKPIMIPV 78 (467)
Q Consensus 3 ~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~---~~~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~-V~~tg~~~~vpv 78 (467)
+-+|++|.|+++.|++.. -...+++++|. |....++|+.+. .+.+.+++|+++.|+...+. |+++|+++.+|+
T Consensus 7 Y~~i~~i~Gplv~ve~~e--g~~y~E~v~i~~~~G~~r~gqVle~~-~~~a~vQVfegT~Gl~~~~t~vrF~g~~l~i~v 83 (463)
T COG1156 7 YTTISEIKGPLIIVEGVE--GASYGELVEIETPDGEVRRGQVLEVR-GDKAVVQVFEGTSGLDTKGTTVRFTGETLKIPV 83 (463)
T ss_pred eeeEEEeccceEEEeccc--CCCcceEEEEECCCCCeeeeeEeecc-CceEEEEEeecccCCCCCCceEEEeCceEEEee
Confidence 568999999999999743 34466778787 446788998864 57899999999999997666 999999999999
Q ss_pred CCCCcceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhhH
Q psy2896 79 GKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNM 158 (467)
Q Consensus 79 g~~lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L~ 158 (467)
++.+|||+||++|+|||+.+.+.+.+..++.+.|.||..|..+.++++|||.+||+|+++.|||+..||+++|-.+..|+
T Consensus 84 s~dllGRifnG~G~PiDggp~i~~e~~~dI~g~~~NP~aR~yP~efIqTgIsaIDg~NtLvrgQKlPIFSgSGlphN~La 163 (463)
T COG1156 84 SEDLLGRIFNGSGKPIDGGPEIVPEDRLDINGAPINPYARIYPEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNELA 163 (463)
T ss_pred cHHhhhhhhcCCCCcCCCCCcCCCCcccccCCCCCCchhhhChhhHhhcCccHHhhhhhhhcccccccccCCCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhC---CCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy2896 159 MELINNIAKAH---SGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEG 235 (467)
Q Consensus 159 ~~i~~~~~~~~---~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~ 235 (467)
.+|+++..... .-.+||+.+|-...|...|.+++.+.|+++ |++++.+.+|+|+++|..+|.+|+|.|||
T Consensus 164 aqIarQA~v~~~~e~favVfaamGit~eea~fF~~~fe~tGal~-------r~vlflnlA~dp~vEri~tPr~aLt~AEy 236 (463)
T COG1156 164 AQIARQATVDGEEEEFAVVFAAMGITHEEALFFMDEFEETGALD-------RAVLFLNLADDPAVERIITPRMALTVAEY 236 (463)
T ss_pred HHHHHhcccCCCccceeEEEeecCccHHHHHHHHHHHHhhhhhh-------hhHhhhhccCCCceeEecchhHHHHHHHH
Confidence 99999643322 125899999999999999999999999998 99999999999999999999999999999
Q ss_pred HHHC-CCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcC--CCCCceeEEEEEEecCCCCCCC
Q psy2896 236 FRDE-GKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAS--TKKGSITSIQAVYVPADDLTDP 312 (467)
Q Consensus 236 fr~~-g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~--~~~GSiT~~~tv~~~~~d~~dp 312 (467)
|+.+ ++|||+|+-|||+||+|+||||.+.+|.|+++|||+++|++|+.+|||||. .++||||.+++.++|+||++||
T Consensus 237 lA~e~~~hVLVilTDMTnyceALREIsaareeVPgrRGYPGymYTdLatiYErAg~i~g~~GSiTqipIlTMP~DDITHP 316 (463)
T COG1156 237 LAFEKDMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRIRGRKGSITQIPILTMPGDDITHP 316 (463)
T ss_pred HhccCCceEEEEEcchhHHHHHHHHHHhhhccCCCcCCCcchHHHHHHHHHHhhceeccCCCceEEEEeeecCCCCcCCC
Confidence 9998 789999999999999999999999999999999999999999999999996 4589999999999999999999
Q ss_pred cccccccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCcccc-----HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy2896 313 SPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVG-----KKHYKIARLVQSTLQRYKELRDIISILGMDE 387 (467)
Q Consensus 313 i~~~~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~-----~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~ 387 (467)
|||.|.+|+.|||+|||+|.++|+||+||++.|+||+|+. .++ ++|..+++++.+.||+.++++++.+++|.++
T Consensus 317 IPDlTGYITEGQivl~r~l~~~gIyPpi~vlpSLSRL~~~-giG~g~TReDH~~~snql~a~YA~g~d~r~l~avvge~a 395 (463)
T COG1156 317 IPDLTGYITEGQIVLSRDLHRKGIYPPINVLPSLSRLMKD-GIGEGKTREDHGDVSNQLYAAYAEGRDLRELVAVVGEEA 395 (463)
T ss_pred CCcccceeccceEEEEhhcccCCcCCCccccccHHHHhhc-ccCCCccccccHHHHHHHHHHHhcchhHHHHHHHhhhhh
Confidence 9999999999999999999999999999999999999954 444 7999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-HHhcCCCcccceeccCCCeeecHHHHHHHHHHhhcCCCCCCchhhhcccCCHHHHHHHH
Q psy2896 388 LSPEDKLLVARARKMQ-RFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAIKKS 462 (467)
Q Consensus 388 ~~~~~~~~~~~~~~i~-~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~g~~d~~~~~~~~~~~~~~~~~~~~ 462 (467)
+++.|++.++++..++ +|++|.++ +..|++||++.-|++++- +|..++.-+. +|.+.||
T Consensus 396 Ls~~D~~~l~F~d~FE~~fi~qg~~----------enrsieetLdlgW~lL~~----lp~~el~ri~--~~~I~ky 455 (463)
T COG1156 396 LSERDRKYLKFADLFEQRFIKQGRY----------ENRSIEETLDLGWELLSI----LPESELTRIK--PDLIDKY 455 (463)
T ss_pred cchhHHHHHHHHHHHHHHHHhcccc----------cCCCHHHHHHHhHHHHHh----CCHhHhccCC--HHHHHHh
Confidence 9999999999999998 79999988 799999999999999995 8888886554 4666666
No 51
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=100.00 E-value=8.2e-79 Score=612.28 Aligned_cols=243 Identities=29% Similarity=0.400 Sum_probs=226.8
Q ss_pred ccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCc
Q psy2896 103 KYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERT 182 (467)
Q Consensus 103 ~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~ 182 (467)
.+.||++.++|.+ +|..+++||.||||+||+|+||+||||++|||++|+|||+|+++|+++. +.|++||++||||+
T Consensus 120 ~~~~Pv~~~~P~~-~r~~~~~pL~TGirvID~l~Pi~kGqr~~I~G~~G~GKT~L~~~Iak~~---~~dvvVyv~iGERg 195 (369)
T cd01134 120 VQKWPVRQPRPVK-EKLPPNEPLLTGQRVLDTLFPVVKGGTAAIPGPFGCGKTVIQQSLSKYS---NSDIVIYVGCGERG 195 (369)
T ss_pred ceeeecccCCCcc-ccCCCCCchhccchhhhccccccCCCEEEEECCCCCChHHHHHHHHhCC---CCCEEEEEEeCCCh
Confidence 4569999999888 9999999999999999999999999999999999999999999999863 35899999999999
Q ss_pred hHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHHHHhHHHHH
Q psy2896 183 REGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSA 262 (467)
Q Consensus 183 ~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a~A~reis~ 262 (467)
+|++||++++++........+.++||++|++|+|+|+.+|++++|+|+|+||||||+|+|||+++||+||||+|+||||+
T Consensus 196 ~Ev~e~l~ef~~l~~~~~~~~~m~rtvlV~nts~~p~~~R~~s~yta~tiAEYfrd~G~dVll~~Ds~tR~A~A~REIs~ 275 (369)
T cd01134 196 NEMTEVLEEFPELTDPVTGEPLMKRTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYNVALMADSTSRWAEALREISG 275 (369)
T ss_pred HHHHHHHHHHHhhccccccCCccceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcChhHHHHHHHHHHH
Confidence 99999999987643222122445699999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCcCchhHHHHHHHHHhcC-------CCCCceeEEEEEEecCCCCCCCcccccccccceEEEeehhhhhcC
Q psy2896 263 LLGRMPSAVGYQPTLAEEMGYLQERIAS-------TKKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLG 335 (467)
Q Consensus 263 ~~ge~p~~~gyp~~~f~~l~~l~ERag~-------~~~GSiT~~~tv~~~~~d~~dpi~~~~~~i~dG~ivLsr~La~~g 335 (467)
++||||+++||||++|++|++||||||+ .++||||++++|++++||++|||++++++|+||||+|||+||++|
T Consensus 276 ~l~E~P~~~GYP~yl~s~La~~yERAG~~~~~~~~~~~GSIT~i~~V~~~g~D~sdPV~~~t~~i~dg~i~Lsr~La~~g 355 (369)
T cd01134 276 RLEEMPGEEGYPAYLGARLASFYERAGRVKCLGSPGREGSVTIVGAVSPPGGDFSEPVTQATLRIVQVFWGLDKKLAQRR 355 (369)
T ss_pred hcCCCCCccCcCccHHHHHHHHHHhcccccccCCCCCCccEEEEEEEEccCCCcCcchHHhhHhhcceEEEECHHHHhCC
Confidence 9999999999999999999999999995 347999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCcCC
Q psy2896 336 IYPAIDPLDSTSRQ 349 (467)
Q Consensus 336 ~~PAID~l~S~SR~ 349 (467)
|||||||+.|+||+
T Consensus 356 ~yPAId~l~S~Sry 369 (369)
T cd01134 356 HFPSINWLISYSKY 369 (369)
T ss_pred CCCCcCCcccccCC
Confidence 99999999999995
No 52
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=100.00 E-value=2.3e-74 Score=592.97 Aligned_cols=422 Identities=29% Similarity=0.395 Sum_probs=375.4
Q ss_pred CceEEEEEcceEEEEecCCCcceeeeeeeeeCceEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecCCCCC
Q psy2896 3 DGKIIQCIGSVVDVEFPHNMVPKIYNALKIENSELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKAT 82 (467)
Q Consensus 3 ~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~~~~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpvg~~l 82 (467)
.|+|.+|+|++|.+.|.. -+.+++.|.+++.++.+||+.+.+ +.+.+++|++|.||++|+.|..||+|++|.+|++|
T Consensus 2 ~G~i~~isGp~V~a~gm~--~~~my~~v~Vg~~~L~gEiI~i~g-d~a~iQVyE~T~Gi~~Ge~V~~Tg~pLsvELGPGl 78 (588)
T COG1155 2 MGKIIRISGPVVVAEGME--GAKMYDVVKVGEMGLIGEIIRIEG-NRATIQVYEDTAGIRPGEKVENTGRPLSVELGPGL 78 (588)
T ss_pred CceEEEEECCEEEEecCc--CCceEEEEEEcCCceeEEEEEEeC-CeEEEEEEeecCCCCCCCeeecCCCceEEEeCccH
Confidence 699999999999999975 467899999988889999999765 78999999999999999999999999999999999
Q ss_pred cceEEEeecCcCCCCC--------------C-------------------------------------------------
Q psy2896 83 LGRIINVLGDPIDEKG--------------N------------------------------------------------- 99 (467)
Q Consensus 83 LGRVld~lG~PiDg~~--------------~------------------------------------------------- 99 (467)
|+.|+|++.|||+... +
T Consensus 79 l~~IyDGiQrPL~~i~e~sg~Fi~RGv~~p~Ldr~~kW~F~P~~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~v~ 158 (588)
T COG1155 79 LKSIYDGIQRPLDVIKETSGDFIARGLNPPALDRKKKWDFVPAVKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGKVT 158 (588)
T ss_pred HhhhhhhccChHHHHHHHhhhHhhcCCCCCCCCcccccccccccccCCEeccCceEEEeccCCceEEEEeCCCCCceEEE
Confidence 9999999999997210 0
Q ss_pred -------------------------cccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCc
Q psy2896 100 -------------------------ISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGK 154 (467)
Q Consensus 100 -------------------------~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GK 154 (467)
+...++||+..+.| ..++.++++||.||.|+||.|+|+.||+...|.||.|+||
T Consensus 159 ~i~~~G~ytv~d~ia~v~~~~g~~~~~m~~~WPVR~~rp-~~eKl~p~~Pl~TGqRviDt~FPvaKGGTaaiPGpFGsGK 237 (588)
T COG1155 159 WIAEEGEYTVEDVIATVSTEGGEVDVQMMTTWPVRKARP-VKRKLPPEIPLVTGQRVIDTLFPVAKGGTAAVPGPFGSGK 237 (588)
T ss_pred EEecCCCceeeEEEEEEecCCCeEEEEEEEeccccCCcc-ccccCCCCCcccccceeehhhcccccCccccccCCCCCCc
Confidence 00235799987655 4888899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy2896 155 TVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAE 234 (467)
Q Consensus 155 t~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE 234 (467)
|++.++++++.. .|++||++||||++|++|.+.++.+..--..-+..|.+|++|++||++|..+|+.+.|+|+|+||
T Consensus 238 TV~qh~laK~sd---adiVVyigCGERGNEmtevL~eFPeL~Dp~tg~~lm~RT~liaNTSnMPVAAREasIYtGiTiaE 314 (588)
T COG1155 238 TVSQHTLSKLAD---GDIVIYVGCGERGNEMTEVLQEFPELKDPNTGQPLMDRTVLIANTSNMPVAAREASIYTGITIAE 314 (588)
T ss_pred Eehhhhhhhhcc---CCEEEEEecCCccchHHHHHHhCccccCCCCCCcccceeeEeecCccchHHHhhhhhhhhhhHHH
Confidence 999999998754 48999999999999999999998764321111224559999999999999999999999999999
Q ss_pred HHHHCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcC-------CCCCceeEEEEEEecCC
Q psy2896 235 GFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAS-------TKKGSITSIQAVYVPAD 307 (467)
Q Consensus 235 ~fr~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~-------~~~GSiT~~~tv~~~~~ 307 (467)
||||+|+||+++.||.+|||+|+||||..++|+|+.+|||.++-+.++++|||||. .+.||+|++++|..+|+
T Consensus 315 Y~RDmGy~v~lmADSTSRWAEAlREisgRleEmPgeegyPaYL~srlA~fYERaG~v~~~~~~~r~GsvtV~gaVSPpGG 394 (588)
T COG1155 315 YYRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLGSRLAEFYERAGRVRLVSPEERFGSITVIGAVSPPGG 394 (588)
T ss_pred HHHhhhhhhHHhhchHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHHHhcCeeeecCCCcceEEEEEecCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999994 24599999999999999
Q ss_pred CCCCCcccccccccceEEEeehhhhhcCCCCcccCCCCCcCCcCC------ccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2896 308 DLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDP------LIVGKKHYKIARLVQSTLQRYKELRDIIS 381 (467)
Q Consensus 308 d~~dpi~~~~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~------~~~~~~~~~~a~~~r~~la~~~~~~~~i~ 381 (467)
|+++|+..+|+.+..-+|-||++||+++|||||||+.|+|.+.+. .-+++++.++..+++++|++..++|++++
T Consensus 395 dfSEPVtq~Tlriv~vFw~Ld~~la~~rhfPaInwl~syS~Y~~~~~~~~~~~v~~~~~~~r~~a~~~Lq~e~elqeiv~ 474 (588)
T COG1155 395 DFSEPVTQNTLRVVRVFWALDAALANRRHFPSINWLNSYSLYTEDLRSWYDENVSPEWGALRDQAMEILQRESELQEIVQ 474 (588)
T ss_pred CcCcccchheeeeeeeecccchhhhhcccCcccChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998631 12468888999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHH-HHhcCCCcccceeccCCCeeecHHHHHHHHHHhh
Q psy2896 382 ILGMDELSPEDKLLVARARKMQ-RFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLIS 437 (467)
Q Consensus 382 ~~g~~~~~~~~~~~~~~~~~i~-~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~ 437 (467)
+.|.+++++.++.++..++.|+ .||+|+.|- .-+.++++..+...|+.|+
T Consensus 475 lVG~eal~e~~~~il~va~~ire~fLqQnafd------~vD~~~~~~kq~~mm~~i~ 525 (588)
T COG1155 475 LVGYDALPEKEKSILDVARIIREDFLQQNAFD------EIDAYCSLRKQYLMLKAIM 525 (588)
T ss_pred HhCccccchHHHHHHHHHHHHHHHHHhhcccC------cccccCCHHHHHHHHHHHH
Confidence 9999999999999999999997 799999551 1235667777776665553
No 53
>KOG1351|consensus
Probab=100.00 E-value=2.2e-73 Score=550.83 Aligned_cols=419 Identities=24% Similarity=0.341 Sum_probs=384.1
Q ss_pred CCCceEEEEEcceEEEEecCCCcceeeeeeeee---CceEEEEEEEEecCcEEEEEEcCCCcCCC-CCceEEecCCceee
Q psy2896 1 MSDGKIIQCIGSVVDVEFPHNMVPKIYNALKIE---NSELTLEVQQQLGDGIVRTIVLGTSEGLR-RGTIVKNTGKPIMI 76 (467)
Q Consensus 1 ~~~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~---~~~~~~EVv~~~~~~~v~l~~l~~~~Gl~-~G~~V~~tg~~~~v 76 (467)
|++-.|..|.|+++...- ++.|...++|.+. |....++|..+.+ +.+.+++|+++.|+. ..+.|.+||+.++.
T Consensus 22 l~y~tv~gvngplvild~--vkfp~y~eiv~ltlpdgt~r~gqvlev~g-~kavvqvfegtsgid~k~t~~eftg~~lr~ 98 (489)
T KOG1351|consen 22 LTYRTVSGVNGPLVILDK--VKFPKYAEIVNLTLPDGSVRSGQVLEVSG-EKAVVQVFEGTSGIDAKKTTVEFTGEILRT 98 (489)
T ss_pred eeEeeecccCCceEEEec--ccccchhhheEEecCCCCeecceEEEecC-CeeEEEEeccccccccccceEEEecccccc
Confidence 456789999999998774 3356555666554 4445566666544 677799999999998 78899999999999
Q ss_pred cCCCCCcceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchh
Q psy2896 77 PVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTV 156 (467)
Q Consensus 77 pvg~~lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~ 156 (467)
||++++||||+|+.|+|||+++++.+..+..+.+.|.||..|..+.++++|||.+||.|..|.|||++.||+.+|.++..
T Consensus 99 pvsedmlgrifngsgkpid~gp~vl~edyldi~gqpinp~~riypeemiqtgis~idvmnsiargqkipifsaaglphne 178 (489)
T KOG1351|consen 99 PVSEDMLGRIFNGSGKPIDKGPPVLAEDYLDINGQPINPYARIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNE 178 (489)
T ss_pred cccHHHhhhhhcCCCCccCCCCCcChHHhhccCCCcCCcccccChHHHHHhCchHHhhhhHHhccCccceeecCCCChhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHH--Hh----h----CCC--EEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHH
Q psy2896 157 NMMELINNI--AK----A----HSG--LSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLR 224 (467)
Q Consensus 157 L~~~i~~~~--~~----~----~~d--v~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~ 224 (467)
++.||+++. .+ . +.| .+||+.+|...+..+.|.+.++++|.++ +++++.+-+++|..+|..
T Consensus 179 iaaqicrqaglvk~~~k~~~d~~~dnfaivfaamgvnmetarffk~dfeengsm~-------~v~lflnlandptierii 251 (489)
T KOG1351|consen 179 IAAQICRQAGLVKRPEKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSME-------RVCLFLNLANDPTIERII 251 (489)
T ss_pred HHHHHHHhcCccccCCcccccccccceeeeehhhcccHHHHHHHHhhHHhcCCcc-------ceEEEEecCCCCchhhhc
Confidence 999999962 11 0 111 5899999999999999999999999887 999999999999999999
Q ss_pred HHHHHHHHHHHHHHC-CCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcC--CCCCceeEEEE
Q psy2896 225 VALTGLTIAEGFRDE-GKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAS--TKKGSITSIQA 301 (467)
Q Consensus 225 ~~~~a~~~AE~fr~~-g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~--~~~GSiT~~~t 301 (467)
.+..|++.|||++.+ +||||+|+.|++.||+|+||+|.+..|.|+|+|||+++|++|+.+|||||. .++||||.+++
T Consensus 252 tprlalt~aeflayq~ekhvlviltdmssya~alrevsaareevpgrrg~pgymytdlatiyeragrvegr~gsitqipi 331 (489)
T KOG1351|consen 252 TPRLALTTAEFLAYQCEKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRVEGRNGSITQIPI 331 (489)
T ss_pred chhhhHhHHHHHHHhhcCeEEEEEeccHHHHHHHHHHHHhhhhCCCcCCCCceehhhHHHHHHHhcccccCCCceeeeee
Confidence 999999999999999 999999999999999999999999999999999999999999999999996 57999999999
Q ss_pred EEecCCCCCCCcccccccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccc----cHHHHHHHHHHHHHHHHHHHHH
Q psy2896 302 VYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIV----GKKHYKIARLVQSTLQRYKELR 377 (467)
Q Consensus 302 v~~~~~d~~dpi~~~~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~----~~~~~~~a~~~r~~la~~~~~~ 377 (467)
+++|.||+++||||.+.+|++|||+.||+|+++.+||+||+|.|+||+|++++- -++|-.+.+++...|+..|+++
T Consensus 332 ltmpnddithpipdltgyitegqiyvdrqlhnr~iyppinvlpslsrlmksaigegmtr~dh~dvsnqlya~yaigkdvq 411 (489)
T KOG1351|consen 332 LTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYACYAIGKDVQ 411 (489)
T ss_pred EecCCcccCCCCCcccceeecceEEEehhhhcccCCCCcccchhHHHHHHHHhcCCcccccchhhHHHHHHHHHhcchHH
Confidence 999999999999999999999999999999999999999999999999976552 3899999999999999999999
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHH-HHhcCCCcccceeccCCCeeecHHHHHHHHHHhhcC
Q psy2896 378 DIISILGMDELSPEDKLLVARARKMQ-RFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISSG 439 (467)
Q Consensus 378 ~~i~~~g~~~~~~~~~~~~~~~~~i~-~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~g 439 (467)
.|.++.|.++++.+|...+++.++++ +|+.|..+ +..+..|+++.-|.++.-
T Consensus 412 amkavvgeeals~ed~l~lefl~kfek~fi~qg~y----------enrtvfesldi~w~llri 464 (489)
T KOG1351|consen 412 AMKAVVGEEALSSEDLLYLEFLDKFEKNFISQGAY----------ENRTVFESLDIAWQLLRI 464 (489)
T ss_pred HHHHHhcccccChhhhHHHHHHHHHHHHHHhcCCc----------cchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999998 79999988 788999999999999884
No 54
>PRK12608 transcription termination factor Rho; Provisional
Probab=100.00 E-value=3.2e-73 Score=578.69 Aligned_cols=303 Identities=22% Similarity=0.282 Sum_probs=284.5
Q ss_pred CCcCCCCCceEEecCCceeecCCCCCcceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccc-cccceeeecc
Q psy2896 57 TSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELL-ETGIKVIDLI 135 (467)
Q Consensus 57 ~~~Gl~~G~~V~~tg~~~~vpvg~~lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l-~TGIr~ID~l 135 (467)
...||+.|+.|.+++++ ++++.+||||+|++|+|+|+.. ...++....|++|.+|.++.++. .+|+|+||+|
T Consensus 55 ~~~~l~~Gd~V~~~~r~---~~~~~~LgrV~~~~G~p~d~~~----~~~~~~~~~pi~p~~R~~ie~~~~~~~~RvID~l 127 (380)
T PRK12608 55 RRFNLRTGDVVEGVARP---RERYRVLVRVDSVNGTDPEKLA----RRPHFDDLTPLHPRERLRLETGSDDLSMRVVDLV 127 (380)
T ss_pred HHhCCCCCCEEEeccCC---CCChhheEEEeccCCcCchhcc----cccCcCcCCCCCccccccccccCcchhHhhhhhe
Confidence 34599999999999998 9999999999999999999873 23456777888999999999998 9999999999
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHHHHhhCCCE-EEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeC
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGL-SVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQ 214 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv-~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t 214 (467)
+|||||||++|+|++|+|||+|+.+++++..++++++ +++++||||++|++||++.+ ..++++++
T Consensus 128 ~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i--------------~~~Vvast 193 (380)
T PRK12608 128 APIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSV--------------KGEVYAST 193 (380)
T ss_pred eecCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHH--------------hhhEEeec
Confidence 9999999999999999999999999999988877787 58899999999999999998 45788999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCC-CC
Q psy2896 215 MNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAST-KK 293 (467)
Q Consensus 215 ~d~~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~-~~ 293 (467)
+|+|+..|.++.++++++||||+++|+||++++||+||||+|+||+++++||+|+ +||||++|+.+++|+||||+. ++
T Consensus 194 ~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~A~A~rei~~~~G~~~s-~G~~~s~~~~~~rl~~~A~~~~~~ 272 (380)
T PRK12608 194 FDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTRLARAYNNEVESSGRTLS-GGVDARALQRPKRLFGAARNIEEG 272 (380)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHHHHHHHhhhcccCCCCC-CCcChHHHhhhHHHHHhcCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999 899999999999999999985 48
Q ss_pred CceeEEEEEEec-CCCCCCCcccccccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHH
Q psy2896 294 GSITSIQAVYVP-ADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQR 372 (467)
Q Consensus 294 GSiT~~~tv~~~-~~d~~dpi~~~~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~ 372 (467)
||||+||||+++ |+|++|||.|++++++||||||||+||++|||||||+++|.||++ +.+++++|++.++++|++|+.
T Consensus 273 GSiT~i~TvLvetg~~mdd~I~ee~kg~~dg~ivLsR~lA~~~~fPAIDi~~S~sR~~-~~l~~~~~~~~~~~~R~~l~~ 351 (380)
T PRK12608 273 GSLTIIATALVDTGSRMDEVIFEEFKGTGNMEIVLDRELADKRVFPAIDIAKSGTRRE-ELLLDSKELEKVRRLRRALAS 351 (380)
T ss_pred cchhheEEEEEecCCCCCcchHHHhcccCCCeEEECHHHHhCCCCCccCcccccCcch-hhcCCHHHHHHHHHHHHHHHc
Confidence 999999999999 889999999999999999999999999999999999999999998 789999999999999999999
Q ss_pred HHHHHHHHHh
Q psy2896 373 YKELRDIISI 382 (467)
Q Consensus 373 ~~~~~~~i~~ 382 (467)
|++++.+-.+
T Consensus 352 ~~~~e~~~~~ 361 (380)
T PRK12608 352 RKPVEAMEAL 361 (380)
T ss_pred cCHHHHHHHH
Confidence 9999886443
No 55
>KOG1352|consensus
Probab=100.00 E-value=4.9e-74 Score=571.70 Aligned_cols=422 Identities=24% Similarity=0.373 Sum_probs=376.8
Q ss_pred CceEEEEEcceEEEEecCCCcceeeeeeeeeCceEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecCCCCC
Q psy2896 3 DGKIIQCIGSVVDVEFPHNMVPKIYNALKIENSELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKAT 82 (467)
Q Consensus 3 ~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~~~~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpvg~~l 82 (467)
+|+|.+|+|+++.+.... -+.++++|+++..++.+||+.+. .+.+++++|+++.|+..||.|..||+|++|.+|+++
T Consensus 21 ~G~v~~VSGPVV~a~~M~--G~aMYELVrVGh~~LvGEiIrle-gD~aTIQVYEeTsG~tVgDpvlrTgkPLsvELGPGi 97 (618)
T KOG1352|consen 21 YGRVYSVSGPVVVAENMA--GCAMYELVRVGHDELVGEIIRLE-GDMATIQVYEETSGLTVGDPVLRTGKPLSVELGPGI 97 (618)
T ss_pred cceEEeccCceEehhccc--chHHHHHHHcchHhhhhheeEec-CceeEEEEEeccCCcccCCchhhcCCcceEeeCcch
Confidence 799999999999999764 45688999998778999999965 578999999999999999999999999999999999
Q ss_pred cceEEEeecCcCCCCC----------------------------------------------------------C-----
Q psy2896 83 LGRIINVLGDPIDEKG----------------------------------------------------------N----- 99 (467)
Q Consensus 83 LGRVld~lG~PiDg~~----------------------------------------------------------~----- 99 (467)
+|.|+|+..||+.... |
T Consensus 98 mgsIfDGIQRPLk~I~~~s~siyiPkGv~~~aL~r~~~weF~p~k~~vg~hitGGDiyg~V~ENsli~hki~lpPr~~Gt 177 (618)
T KOG1352|consen 98 MGSIFDGIQRPLKDISELSQSIYIPKGVNTPALDREIKWEFTPGKLRVGDHITGGDIYGSVFENSLIKHKILLPPRARGT 177 (618)
T ss_pred hhhhhhhhhhhHHHHHHhcCcEeccCCCCccccCccceeecccceeeecceeecCceEEEeeccchhhceeecCCccCce
Confidence 9999999999984210 0
Q ss_pred ---------------------------cccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCC
Q psy2896 100 ---------------------------ISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGV 152 (467)
Q Consensus 100 ---------------------------~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~ 152 (467)
...-+.||+..+.| ..+..+-+.||.||.|++|+|+||..|+...|.|..||
T Consensus 178 vt~iAp~G~Y~~~d~vlE~Ef~g~k~~~tmlq~WPVR~pRP-v~ekl~an~PLltGQRvLDalfPcVqGGTtaIPGAFGC 256 (618)
T KOG1352|consen 178 VTYIAPAGNYTLDDVVLELEFDGEKTKFTMLQTWPVRQPRP-VTEKLPANHPLLTGQRVLDALFPCVQGGTTAIPGAFGC 256 (618)
T ss_pred EEEEecCCccccccEEEEEeecCceeeEEEEEecccCCCcc-hhhccCCCCcccccchHHHhhcchhcCCccccCccccc
Confidence 00125699976544 56777889999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcc-cC-CCCCCCceEEEEEeCCCCCHHHHHHHHHHHH
Q psy2896 153 GKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKV-VN-LDKPEKSKVSMVYGQMNEPSGNRLRVALTGL 230 (467)
Q Consensus 153 GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~-~~-~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~ 230 (467)
|||++.+.+.+. .|+|++||++||||++|+.|+..++.+... ++ .-+..|+||.+|++|+++|..+|..+.|+++
T Consensus 257 GKTVISQsLSKY---SNSD~iiYVGCGERGNEMsEVL~dFPeLt~ev~G~~esiMKRT~LVANTSNMPVAAREASIYTGI 333 (618)
T KOG1352|consen 257 GKTVISQSLSKY---SNSDAIIYVGCGERGNEMSEVLMDFPELTMEVDGKTESIMKRTALVANTSNMPVAAREASIYTGI 333 (618)
T ss_pred chHHHHHHHhhc---cCCCeEEEEcccccchhHHHHHHhChhhEEecCCcchhhhhhhhhhhcCCCCchhhhhhhhhhcc
Confidence 999999988764 457999999999999999999999877542 11 2234788999999999999999999999999
Q ss_pred HHHHHHHHCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcC-------CCCCceeEEEEEE
Q psy2896 231 TIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAS-------TKKGSITSIQAVY 303 (467)
Q Consensus 231 ~~AE~fr~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~-------~~~GSiT~~~tv~ 303 (467)
|++|||||+|+||-++.||.+|||+|+||||..++|+|+..|||.++...|+++|||||. .+.||+|++.+|.
T Consensus 334 TlsEYfRDmG~nVsMmADStSRWAEALREISGRLaEMPADsGyPAYLgArLAsFYERAG~vkcLGsP~ReGsVsIVgAVS 413 (618)
T KOG1352|consen 334 TLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGSPDREGSVSIVGAVS 413 (618)
T ss_pred cHHHHHHhcCcceeeeecchhHHHHHHHHhhhhhhcCcCcCCCcHHHHHHHHHHHHhcCceeecCCCCcCceeEEEEeec
Confidence 999999999999999999999999999999999999999999999999999999999993 5799999999999
Q ss_pred ecCCCCCCCcccccccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCcc------ccHHHHHHHHHHHHHHHHHHHHH
Q psy2896 304 VPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLI------VGKKHYKIARLVQSTLQRYKELR 377 (467)
Q Consensus 304 ~~~~d~~dpi~~~~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~------~~~~~~~~a~~~r~~la~~~~~~ 377 (467)
.||+|++||++..|.+|+..+|-||++||+|.|||.|||+.|+|++| .++ ..|++.-+..++|++|+..+++.
T Consensus 414 PpGGDFsDPVTsATLgIvQVFWGLDKKLAQRKHFPSiNwliSYSkY~-~aL~~~Ye~~~peF~~lRtk~keilq~eedl~ 492 (618)
T KOG1352|consen 414 PPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYM-RALDPFYEKNYPEFVVLRTKAKEILQEEEDLS 492 (618)
T ss_pred CCCCCcCCcchhhhhheeeehhcccHHHHhhccCCccchhhhHHHHH-HHHHHHHHhcCCCccchHHHHHHHHhhhhhHH
Confidence 99999999999999999999999999999999999999999999987 333 12666788999999999999999
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHH-HHhcCCCcccceeccCCCeeecHHHHHHHHHHhhc
Q psy2896 378 DIISILGMDELSPEDKLLVARARKMQ-RFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISS 438 (467)
Q Consensus 378 ~~i~~~g~~~~~~~~~~~~~~~~~i~-~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~ 438 (467)
+++++.|...+++.|+.+++.+..|. +||+|+-+. ..+.+|++.+|+..|..++.
T Consensus 493 eivQLVGK~aL~etdKitLevaklik~DfLqQN~ys------~YD~~CPfyKt~~Mlrn~i~ 548 (618)
T KOG1352|consen 493 EIVQLVGKSALAETDKITLEVAKLIKDDFLQQNGYS------PYDRFCPFYKTVGMLRNIIA 548 (618)
T ss_pred HHHHHhhhhhhhhcchhhHHHHHHHHHHHHhhcCCC------chhhcCchHHHHHHHHHHHH
Confidence 99999999999999999999999997 799999664 23577899999988876643
No 56
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=100.00 E-value=7e-70 Score=521.82 Aligned_cols=211 Identities=46% Similarity=0.741 Sum_probs=201.5
Q ss_pred ccceeeecccccccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCc
Q psy2896 127 TGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKS 206 (467)
Q Consensus 127 TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~ 206 (467)
||||+||+|+|||||||++|||++|+|||+|+++|++|+. .+++||++||||++|+.||++++.+.++++
T Consensus 1 TGir~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~~---~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~------- 70 (215)
T PF00006_consen 1 TGIRAIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQD---ADVVVYALIGERGREVTEFIEELKGEGALE------- 70 (215)
T ss_dssp -SHHHHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHCT---TTEEEEEEESECHHHHHHHHHHHHHTTGGG-------
T ss_pred CCCceeccccccccCCEEEEEcCcccccchhhHHHHhccc---ccceeeeeccccchhHHHHHHHHhhccccc-------
Confidence 8999999999999999999999999999999999999874 478899999999999999999999998887
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHH
Q psy2896 207 KVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQE 286 (467)
Q Consensus 207 ~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~E 286 (467)
|+++|++|+|+||.+|++++++|+++|||||++|+|||+++||+||||+|+||+++++||+|+++|||+++|+.+++|+|
T Consensus 71 ~t~vv~~t~~~~~~~r~~~~~~a~t~AEyfrd~G~dVlli~Dsltr~a~A~reis~~~g~~p~~~Gyp~~~~~~l~~l~E 150 (215)
T PF00006_consen 71 RTVVVAATSDEPPAARYRAPYTALTIAEYFRDQGKDVLLIIDSLTRWAQAYREISLLLGEPPGREGYPPSLFSDLASLYE 150 (215)
T ss_dssp GEEEEEEETTS-HHHHHHHHHHHHHHHHHHHHTTSEEEEEEETHHHHHHHHHHHHHHTTSSBBGGGSBTTHHHHHHHHHT
T ss_pred ccccccccchhhHHHHhhhhccchhhhHHHhhcCCceeehhhhhHHHHHHHHhhhcccccccccccccchhccchhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCC----CCCceeEEEEEEecCCCCCCCcccccccccceEEEeehhhhhcCCCCcccCCCCCc
Q psy2896 287 RIAST----KKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTS 347 (467)
Q Consensus 287 Rag~~----~~GSiT~~~tv~~~~~d~~dpi~~~~~~i~dG~ivLsr~La~~g~~PAID~l~S~S 347 (467)
|||+. ++||||+|++|++|+||++|||++++++++||||+|||+||++||||||||+.|+|
T Consensus 151 Rag~~~~~~~~GSIT~~~~v~~~~~d~~~pi~~~~~~~~dg~i~L~r~la~~~~~PAId~~~S~S 215 (215)
T PF00006_consen 151 RAGKVNSEEGGGSITAIPTVLVPGDDITDPIPDNTKSILDGHIVLSRKLAERGIFPAIDVLKSVS 215 (215)
T ss_dssp TSEEBSTTTTSEEEEEEEEEEESTTBTTSHHHHHHHTTSSEEEEB-HHHHHTT-SS-BETTTEEE
T ss_pred HhhccccccCCceeeeecccccccccccchHHHHHHhhcceEEEeCHHHHhCCCCCccCCccCCC
Confidence 99987 89999999999999999999999999999999999999999999999999999987
No 57
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=100.00 E-value=1.7e-65 Score=522.70 Aligned_cols=302 Identities=22% Similarity=0.288 Sum_probs=268.8
Q ss_pred CcCCCCCceEEecCCceeecCCCC--CcceEEEeecCcCCCCCCcccccccCCCC-CCCCccccccccc--cccccceee
Q psy2896 58 SEGLRRGTIVKNTGKPIMIPVGKA--TLGRIINVLGDPIDEKGNISNKYVSSIHR-TPPSYEELSSSQE--LLETGIKVI 132 (467)
Q Consensus 58 ~~Gl~~G~~V~~tg~~~~vpvg~~--lLGRVld~lG~PiDg~~~~~~~~~~pi~~-~~p~~~~R~~~~~--~l~TGIr~I 132 (467)
..+|+.||.|...-++.+ -++. -|-+|-...|.+.+. ...+.++.. .|++|.+|..+++ ++.||+|+|
T Consensus 88 ~~~lr~gd~v~g~~r~~~--~~e~~~~l~~v~~vng~~~~~-----~~~r~~f~~l~p~~p~~R~~le~~~~~~~~~rvI 160 (416)
T PRK09376 88 RFNLRTGDTVEGKIRPPK--EGERYFALLKVETVNGEDPEK-----ARNRPLFENLTPLYPNERLRLETGNPEDLSTRII 160 (416)
T ss_pred hcCCCCCCEEEEEeeCCC--CCCCccceEEEeeeCCCCHHH-----hcCCCCcccCCCCChhhcccccCCCCcccceeee
Confidence 349999999999877643 2332 244666666655443 334445544 3667788999988 799999999
Q ss_pred ecccccccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEE-EEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEE
Q psy2896 133 DLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLS-VFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMV 211 (467)
Q Consensus 133 D~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~-V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv 211 (467)
|+|+|||||||.+|||++|+|||||+.+|+++..+++.+++ ++++||||++|+.++.+.+ ..+||
T Consensus 161 D~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsI--------------lg~vv 226 (416)
T PRK09376 161 DLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSV--------------KGEVV 226 (416)
T ss_pred eeecccccCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHh--------------cCcEE
Confidence 99999999999999999999999999999998877777775 6689999999999999998 45899
Q ss_pred EeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCC
Q psy2896 212 YGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAST 291 (467)
Q Consensus 212 ~~t~d~~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~ 291 (467)
++|+|+||..|+++++.++++||||+++|+||++++||+|||++|+||+++++||+|+ .||+|+.|+.+++|+|||++.
T Consensus 227 ~st~d~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR~arAqrev~~~sG~~~s-gG~~~~~~~~~~r~f~~Arn~ 305 (416)
T PRK09376 227 ASTFDEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLS-GGVDANALHRPKRFFGAARNI 305 (416)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHHHHHHHHhhhhccCCCCC-CCCChhHhhhhHHHHHhhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999 899999999999999999985
Q ss_pred -CCCceeEEEEEEec-CCCCCCCcccccccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHH
Q psy2896 292 -KKGSITSIQAVYVP-ADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQST 369 (467)
Q Consensus 292 -~~GSiT~~~tv~~~-~~d~~dpi~~~~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~ 369 (467)
++||||+|+||+++ |++++|||.++++++.||||+|||+||++||||||||++|.||.+ +.+++++|++.++++|++
T Consensus 306 e~~GSlT~i~T~LvetGs~mdd~I~ee~kg~~n~~ivLdR~lA~~r~fPAIDi~~S~sR~~-~~l~~~~~~~~~~~lR~~ 384 (416)
T PRK09376 306 EEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMELHLDRKLAEKRIFPAIDINRSGTRKE-ELLLSPEELQKVWILRKI 384 (416)
T ss_pred CCCcceEEEEEEEecCCCCCCccHHHHHhhhcCceEeECHHHHhcCCCCccCccccccccc-cccCCHHHHHHHHHHHHH
Confidence 79999999999999 788899999999999999999999999999999999999999997 789999999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy2896 370 LQRYKELRDIISI 382 (467)
Q Consensus 370 la~~~~~~~~i~~ 382 (467)
|+.|++.+.+-.+
T Consensus 385 l~~~~~~e~~e~~ 397 (416)
T PRK09376 385 LSPMDEVEAMEFL 397 (416)
T ss_pred HHccCcHHHHHHH
Confidence 9999988776443
No 58
>PRK12678 transcription termination factor Rho; Provisional
Probab=100.00 E-value=1.4e-65 Score=538.93 Aligned_cols=295 Identities=23% Similarity=0.281 Sum_probs=260.5
Q ss_pred CcCCCCCceEEecCCceeecCCC------C--CcceEEEeecCcCCCCCCcccccccCCCCC-CCCcccccccc-ccccc
Q psy2896 58 SEGLRRGTIVKNTGKPIMIPVGK------A--TLGRIINVLGDPIDEKGNISNKYVSSIHRT-PPSYEELSSSQ-ELLET 127 (467)
Q Consensus 58 ~~Gl~~G~~V~~tg~~~~vpvg~------~--lLGRVld~lG~PiDg~~~~~~~~~~pi~~~-~p~~~~R~~~~-~~l~T 127 (467)
..||+.|+.|...-++.+- ++ . -|-+| +.++|..+.....+.++... |++|.+|..+. +++.|
T Consensus 330 r~~Lr~Gd~v~G~vr~p~~--~e~~~~r~k~~~l~~v-----~~vNg~~~e~~~~r~~F~~Ltp~~P~~R~~le~e~~~~ 402 (672)
T PRK12678 330 KNGLRKGDAVTGAVRAPRE--GEQGNQRQKFNPLVRL-----DSVNGMSPEEAKKRPEFGKLTPLYPNERLRLETEPKKL 402 (672)
T ss_pred HcCCCCCCEEEEeecCCCC--CccccccceeeeeeeE-----eeeCCCChHHhccCCCcccCCCCChHHhcccccCcccc
Confidence 3499999999986555331 22 0 12244 44566666555566666665 55677788888 99999
Q ss_pred cceeeecccccccCceeeeecCCCCCchhhHHHHHHHHHhhCCCE-EEEEEecCCchHHHHHHHHHHhhcccCCCCCCCc
Q psy2896 128 GIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGL-SVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKS 206 (467)
Q Consensus 128 GIr~ID~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv-~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~ 206 (467)
|+|+||+|+|||||||.+|||++|+|||+|+++|+++..++++++ ++|++||||++||++|...+
T Consensus 403 giRvIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERpeEVtdm~rsV-------------- 468 (672)
T PRK12678 403 TTRVIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERPEEVTDMQRSV-------------- 468 (672)
T ss_pred cceeeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCchhhHHHHHHhc--------------
Confidence 999999999999999999999999999999999999887777777 46789999999999985555
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHHHHhHHHHHhcCC-----CCCCCCCcCchhHHH
Q psy2896 207 KVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGR-----MPSAVGYQPTLAEEM 281 (467)
Q Consensus 207 ~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a~A~reis~~~ge-----~p~~~gyp~~~f~~l 281 (467)
+..||++|+|+||.+|++++|+|+++||||+++|+||||++||+||||+||||++++.|+ +|+..+|||++|+.+
T Consensus 469 kgeVVasT~D~p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSlTR~ArAyrev~~~sGr~lSGG~d~~a~ypP~~F~~~ 548 (672)
T PRK12678 469 KGEVIASTFDRPPSDHTTVAELAIERAKRLVELGKDVVVLLDSITRLGRAYNLAAPASGRILSGGVDSTALYPPKRFFGA 548 (672)
T ss_pred cceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchHHHHHHHHhhcCCCCccCCCCchhhccCccHHHHH
Confidence 556999999999999999999999999999999999999999999999999999999999 799999999999999
Q ss_pred HHHHHHhcCCCCCceeEEEEEEec-CCCCCCCcccccccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHH
Q psy2896 282 GYLQERIASTKKGSITSIQAVYVP-ADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHY 360 (467)
Q Consensus 282 ~~l~ERag~~~~GSiT~~~tv~~~-~~d~~dpi~~~~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~ 360 (467)
++++|+ +||||+|+||+++ ++++.+||.++.+++.||||+|||+||++||||||||++|+||.+ +.+++++|+
T Consensus 549 AR~iE~-----gGSLTii~TvLVETGS~mDd~Ifeefkgtgn~elvLsR~LAerrifPAIDv~~S~SR~e-e~l~~~~e~ 622 (672)
T PRK12678 549 ARNIEN-----GGSLTIIATALVETGSKMDEVIFEEFKGTGNMELKLDRKLADKRIFPAVDVNASGTRKE-ELLLSPDEL 622 (672)
T ss_pred HHhhcc-----CccceeeEEEEeccCCccCcchHHHHhhccCceeeECHHHHhCCCCCccCCCcCccccc-hhhCCHHHH
Confidence 999985 8999999999999 667788999999999999999999999999999999999999998 789999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy2896 361 KIARLVQSTLQRYKELRDI 379 (467)
Q Consensus 361 ~~a~~~r~~la~~~~~~~~ 379 (467)
++++++|++|+.|...+.+
T Consensus 623 ~~~~~lRr~l~~~~~~~a~ 641 (672)
T PRK12678 623 AIVHKLRRVLSGLDSQQAI 641 (672)
T ss_pred HHHHHHHHHHHcCCHHHHH
Confidence 9999999999999887775
No 59
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=100.00 E-value=1.5e-60 Score=488.67 Aligned_cols=302 Identities=19% Similarity=0.252 Sum_probs=256.5
Q ss_pred CcCCCCCceEEecCCceeecCCCCCcceEEEeecCcCCCCCCcccccccCCCCCCCCcccccc-c-cccccccceeeecc
Q psy2896 58 SEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSS-S-QELLETGIKVIDLI 135 (467)
Q Consensus 58 ~~Gl~~G~~V~~tg~~~~vpvg~~lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~-~-~~~l~TGIr~ID~l 135 (467)
..+|+.||.|.+.-++.. +-+-+-.+++. +++++..+.....+..+...+|.+++... . +.+-..|+|+||.+
T Consensus 88 ~~~lr~gd~v~g~~R~~~---~~ER~~~Ll~v--~~vn~~~~e~~~~ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~ 162 (415)
T TIGR00767 88 RFNLRTGDTIEGQIRSPK---EGERYFALLKV--ESVNGDDPEKAKNRVLFENLTPLYPNERLRLETSTEDLSTRVLDLF 162 (415)
T ss_pred hcCCCCCCEEEEEEeccc---cHhHHHHHhCC--CccCCCCccccCCCeEEEEeeecCCCccceeecCccccceeeeeeE
Confidence 349999999998765532 21111122222 33344333333334555555666554332 2 23456799999999
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHHHHhhCCCE-EEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeC
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGL-SVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQ 214 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv-~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t 214 (467)
+|||+|||++|+|++|+|||+|+.+++++...++.++ +++++||||++|+.+|++.+ ...||++|
T Consensus 163 ~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsI--------------lg~Vvast 228 (415)
T TIGR00767 163 APIGKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSV--------------KGEVVAST 228 (415)
T ss_pred EEeCCCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHh--------------hceEEEec
Confidence 9999999999999999999999999999876665555 56689999999999999998 56899999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCC-CC
Q psy2896 215 MNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAST-KK 293 (467)
Q Consensus 215 ~d~~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~-~~ 293 (467)
+|+||..|.++++.+++.||||+++|+||++++||+||||+|+||+++++||||+ +||||++|+.+++|+|||++. ++
T Consensus 229 ~d~p~~~~~~va~~v~e~Ae~~~~~GkdVVLlIDEitR~arAqrei~~~~G~~~s-~G~~~~~~~~~~~~~~~a~~~~~~ 307 (415)
T TIGR00767 229 FDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVTPASGKVLS-GGVDANALHRPKRFFGAARNIEEG 307 (415)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHcCCCeEEEEEChhHHHHHHHHhHhhcCCCCC-CCcChhhhcccHHHHhhcCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999999985 79
Q ss_pred CceeEEEEEEec-CCCCCCCcccccccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHH
Q psy2896 294 GSITSIQAVYVP-ADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQR 372 (467)
Q Consensus 294 GSiT~~~tv~~~-~~d~~dpi~~~~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~ 372 (467)
||||+|+||+++ |++++|||.++.+++.||||+|||+||++|||||||+++|.||++ +.+++++|++.++++|++|+.
T Consensus 308 GSiT~~~TvLvetg~~mdd~i~~e~kg~~~~~ivL~r~la~~~~fPAidi~~S~sR~~-~~l~~~~~~~~~~~~r~~l~~ 386 (415)
T TIGR00767 308 GSLTIIATALIDTGSRMDEVIFEEFKGTGNMELHLDRKLADRRIFPAIDIKKSGTRKE-ELLLTPEELQKIWVLRKIISP 386 (415)
T ss_pred cchhheEEEEeccCCCCCcchHHHhccccCCeEEECHHHHhCCCCCCcCcccccccch-hhcCCHHHHHHHHHHHHHHHc
Confidence 999999999999 778889999999999999999999999999999999999999998 789999999999999999999
Q ss_pred HHHHHHHH
Q psy2896 373 YKELRDII 380 (467)
Q Consensus 373 ~~~~~~~i 380 (467)
|++.+.+-
T Consensus 387 ~~~~~~~~ 394 (415)
T TIGR00767 387 MDSIEAME 394 (415)
T ss_pred CCcHHHHH
Confidence 99877653
No 60
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=100.00 E-value=1.4e-54 Score=425.02 Aligned_cols=238 Identities=24% Similarity=0.323 Sum_probs=223.5
Q ss_pred ceeeecccccccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEE-EEEEecCCchHHHHHHHHHHhhcccCCCCCCCce
Q psy2896 129 IKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLS-VFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSK 207 (467)
Q Consensus 129 Ir~ID~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~-V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~ 207 (467)
.|+||+|+|||+|||++|||++|+|||||+.+++++....+.+++ ++++||||++++.+|++.+ +
T Consensus 4 ~~~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I--------------~ 69 (249)
T cd01128 4 TRVVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSV--------------K 69 (249)
T ss_pred hhheeeecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHh--------------c
Confidence 399999999999999999999999999999999987655444665 5567999999999999999 7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHH
Q psy2896 208 VSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQER 287 (467)
Q Consensus 208 ~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ER 287 (467)
+++|++++|+|+..|+++++.+++.||||+++|++|++++|++|||++|+||+++..|++| ..||||++|+.+++++||
T Consensus 70 ~~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~-sgG~~~~~~~~~~q~~~~ 148 (249)
T cd01128 70 GEVIASTFDEPPERHVQVAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKIL-SGGVDANALHKPKRFFGA 148 (249)
T ss_pred cEEEEecCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCC-CCCcChhhhhhhHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999 789999999999999999
Q ss_pred hcCC-CCCceeEEEEEEec-CCCCCCCcccccccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHH
Q psy2896 288 IAST-KKGSITSIQAVYVP-ADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARL 365 (467)
Q Consensus 288 ag~~-~~GSiT~~~tv~~~-~~d~~dpi~~~~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~ 365 (467)
|++. ++||||++||++++ ++++.||+.++.+++.||||+|||+|+..|+||||||+.|.||.+ +.++++.|++.+.+
T Consensus 149 Ar~~~~~gsIt~l~T~~~d~~~~~~~~i~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr~~-~ll~~~~~~~~~~~ 227 (249)
T cd01128 149 ARNIEEGGSLTIIATALVDTGSRMDDVIFEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTRKE-ELLLDPEELQRMWL 227 (249)
T ss_pred hcCCCCCCceEEeeeheecCCCcccchHHHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCccc-hhhCCHHHHHHHHH
Confidence 9985 89999999999999 566777999999999999999999999999999999999999986 78889999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy2896 366 VQSTLQRYKELRDIISI 382 (467)
Q Consensus 366 ~r~~la~~~~~~~~i~~ 382 (467)
+|++|+.|++++++..+
T Consensus 228 ~r~~~~~~~~~~~~~~~ 244 (249)
T cd01128 228 LRRVLSDMDPIEAMEFL 244 (249)
T ss_pred HHHHHHccChHHHHHHH
Confidence 99999999999998665
No 61
>COG1158 Rho Transcription termination factor [Transcription]
Probab=100.00 E-value=8.7e-46 Score=364.73 Aligned_cols=288 Identities=25% Similarity=0.323 Sum_probs=243.9
Q ss_pred cCCCCCceEEecCCceeecCCCCC--cceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccc------cccccce
Q psy2896 59 EGLRRGTIVKNTGKPIMIPVGKAT--LGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQE------LLETGIK 130 (467)
Q Consensus 59 ~Gl~~G~~V~~tg~~~~vpvg~~l--LGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~------~l~TGIr 130 (467)
.+|+.||.|.+.-++++- |+.+ |=+| +.+++.++....++.++...+|.+++++..-+ .+.| |
T Consensus 92 f~LrtGD~v~G~vR~Pke--~Ery~aLl~v-----e~vN~~~pe~~~~R~~F~~LTPlyP~erl~LE~~~~~~~ls~--R 162 (422)
T COG1158 92 FNLRTGDTVEGKVRPPKE--GERYFALLKV-----EAVNGDDPEKAKNRVLFENLTPLYPNERLKLERENGSTDLST--R 162 (422)
T ss_pred ccCccCCEEeeeecCCCc--ccceeeeEEE-----eecCCCCHHHhhccCCcccCCCCCCcceeeeecCCCcccchh--H
Confidence 489999999888776652 3333 2244 33444455555677788888888887654322 2333 9
Q ss_pred eeecccccccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEE-EecCCchHHHHHHHHHHhhcccCCCCCCCceEE
Q psy2896 131 VIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFT-GVGERTREGNDFYHEMIEAKVVNLDKPEKSKVS 209 (467)
Q Consensus 131 ~ID~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~-liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~v 209 (467)
+||.+.|||||||.+|++||.+|||+|++.||++...+|+++.+++ ||+||++||+|+.+.. +..
T Consensus 163 viDL~~PIGkGQR~LIVAPPkaGKT~lLq~IA~aIt~N~Pe~~LiVLLIDERPEEVTdmqrsV--------------~ge 228 (422)
T COG1158 163 VIDLISPIGKGQRGLIVAPPKAGKTTLLQNIANAITTNHPECELIVLLIDERPEEVTDMQRSV--------------KGE 228 (422)
T ss_pred HHhhhcccCCCceeeEecCCCCCchHHHHHHHHHHhcCCCceEEEEEEecCCchHHHHHHHhh--------------cce
Confidence 9999999999999999999999999999999999999999998775 9999999999999998 789
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCC-----CCCcCchhHHHHHH
Q psy2896 210 MVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSA-----VGYQPTLAEEMGYL 284 (467)
Q Consensus 210 vv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~-----~gyp~~~f~~l~~l 284 (467)
||++|+|+||..|.+++.+.+..|.++.++|+||++++||+||+||||+-+....|+..+. .-|+|.-|.-.|+-
T Consensus 229 ViaSTFDepp~~HvqVAE~viEkAKRlVE~~kDVVILLDSITRLaRAYN~v~P~SGkvLsGGvD~nAL~~PKrFFGAARN 308 (422)
T COG1158 229 VVASTFDEPPSRHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLSGGVDANALHRPKRFFGAARN 308 (422)
T ss_pred EEeecCCCcchhhHHHHHHHHHHHHHHHHcCCcEEEEehhHHHHHHHhcccCCCCCCeecCCcChhhhcCchhhhhhhhc
Confidence 9999999999999999999999999999999999999999999999999999999998774 45566655444443
Q ss_pred HHHhcCCCCCceeEEEEEEecCCCCCCCcccccccccceE----EEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHH
Q psy2896 285 QERIASTKKGSITSIQAVYVPADDLTDPSPATTFAHLDST----VVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHY 360 (467)
Q Consensus 285 ~ERag~~~~GSiT~~~tv~~~~~d~~dpi~~~~~~i~dG~----ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~ 360 (467)
. ++|||+|+++|+++++|.-+|. .++..|+|+ |+|||+||++++|||||+.+|.+|-- +.++++++.
T Consensus 309 I-----EeGGSLTIiATALVdTGSrMDe---VIfEEFKGTGNmEl~LdR~laerRifPAIdi~kSGTRKE-eLLl~~~~l 379 (422)
T COG1158 309 I-----EEGGSLTIIATALVDTGSRMDE---VIFEEFKGTGNMELHLDRKLAERRIFPAIDINKSGTRKE-ELLLSPDEL 379 (422)
T ss_pred c-----ccCcchhhhhhhhhhcCCccch---hhhhhhcCCCceEEEEhhhhhhcccccceecccCCcchH-hhcCCHHHH
Confidence 3 4799999999999999999987 788888886 99999999999999999999999984 788899999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy2896 361 KIARLVQSTLQRYKELRD 378 (467)
Q Consensus 361 ~~a~~~r~~la~~~~~~~ 378 (467)
+..+.+|++|+...+.+.
T Consensus 380 ~k~w~lRr~l~~md~~~a 397 (422)
T COG1158 380 QKMWVLRRILSPMDEIDA 397 (422)
T ss_pred HHHHHHHHHhcCCChHHH
Confidence 999999999986555444
No 62
>KOG1353|consensus
Probab=100.00 E-value=3.5e-41 Score=320.62 Aligned_cols=308 Identities=23% Similarity=0.327 Sum_probs=266.9
Q ss_pred CCceEEEEEcceEEEEecCCCcceeeeeeeeeCceEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecCCCC
Q psy2896 2 SDGKIIQCIGSVVDVEFPHNMVPKIYNALKIENSELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKA 81 (467)
Q Consensus 2 ~~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~~~~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpvg~~ 81 (467)
..|+|.+|-+.+..+.|... ..-.+.+++..+ + -.+.-++..+.+.+..|++..-++.|+.|..|+....||+++.
T Consensus 20 EtgrVLsIGdGIArV~GL~n--vQAeEmvEFssG-l-Kgmalnle~~~vg~v~~g~d~~ikeg~~VkrTgaIvDVpvg~~ 95 (340)
T KOG1353|consen 20 ETGRVLSIGDGIARVYGLTN--VQAEEMVEFSSG-L-KGMALNLEGENVGVVVFGEDSLIKEGDTVKRTAAISDVPPLKA 95 (340)
T ss_pred hccceEEEcCceeeeecccc--cchHHHHhhhcc-c-cchhccccCCceEEEEEcCcceeccCceEEeeeeeeccCchHH
Confidence 47999999999999999751 112344444421 1 1222345567788889999999999999999999999999999
Q ss_pred CcceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhhHHHH
Q psy2896 82 TLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMEL 161 (467)
Q Consensus 82 lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L~~~i 161 (467)
|||||.|++|+|+||++++....++ ...|....+|+.||+|++|++.|||||||.+|.|+..+|||.|..+.
T Consensus 96 LlgrvvdAlGn~idgkG~i~~~~~~--------ii~r~Sv~epmqtg~KAvdslVpigRgqrELiIgdRqTGkTsla~dT 167 (340)
T KOG1353|consen 96 LLGRVGCALGEPIDGNGKISAKERR--------IIPRASVDEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTSLAIDT 167 (340)
T ss_pred HhhhhhhhhcCeecCCCCccccccc--------cccceeeechhhhhhhHhhceeeeccCceEEEeccccCCceeeeehh
Confidence 9999999999999999998776555 56788899999999999999999999999999999999999999999
Q ss_pred HHHHHhhCC-------CEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy2896 162 INNIAKAHS-------GLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAE 234 (467)
Q Consensus 162 ~~~~~~~~~-------dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE 234 (467)
+.|+.+.+. -.|||+.||++.+.+..+++.+.+.++++ ++++|++|++
T Consensus 168 I~nqk~~N~~~~ekkKiyCvyvaigqkrStvaqlv~~l~~~~a~~-------y~ivv~atas------------------ 222 (340)
T KOG1353|consen 168 ILNQKRGNECLDEKKKIYCVYVAIGQKRSTVAQLVQRLEEADAME-------YSIVVAATAS------------------ 222 (340)
T ss_pred hhhhhhhcccccccceEEEEEEecccchhHHHHHHHHHHhcCCce-------EEEEEEeecc------------------
Confidence 999876443 26999999999999999999999999997 9999999987
Q ss_pred HHHHCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCCCCCceeEEEEEEecCCCCCCCcc
Q psy2896 235 GFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQAVYVPADDLTDPSP 314 (467)
Q Consensus 235 ~fr~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~~~GSiT~~~tv~~~~~d~~dpi~ 314 (467)
.++|.+.+||
T Consensus 223 ----------------------------------------------------------------------q~gdvsayip 232 (340)
T KOG1353|consen 223 ----------------------------------------------------------------------QAGDVSAYIP 232 (340)
T ss_pred ----------------------------------------------------------------------cccceeeecc
Confidence 7889999999
Q ss_pred cccccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHH
Q psy2896 315 ATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKL 394 (467)
Q Consensus 315 ~~~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~~~~~ 394 (467)
.++.|| ||||+|..+|+.+|+.||||+..|+||+++ +..-++.+++|..+|-.|++|+|+..+.+ +|- .+....++
T Consensus 233 tnvisi-dgqi~l~t~lfy~girpainvg~svsrvgs-aaq~kamkqvag~~klelaq~revaafaq-fgs-dlda~tq~ 308 (340)
T KOG1353|consen 233 TNVISI-DGQIFLETELFYKGIRPAINVGLSVSRVGS-AAQTKAMKQVAGSLKLELAQYREVAAFAQ-FGS-DLDAATQQ 308 (340)
T ss_pred cceeee-cchhHHHHHHHHhccchhheeeeEeeeccc-hHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hcc-cccHHHHH
Confidence 999999 999999999999999999999999999984 44458889999999999999999999765 664 57778999
Q ss_pred HHHHHHHHHHHhcCCCcccceeccCCCeeecHHHHH
Q psy2896 395 LVARARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTL 430 (467)
Q Consensus 395 ~~~~~~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~ 430 (467)
.+.++.++.++|+|+.+ .+...+|.+
T Consensus 309 ~l~rg~rltellkq~qy----------~p~~~e~qv 334 (340)
T KOG1353|consen 309 LLNRGVRLTELLKQGQY----------APLAIEEQV 334 (340)
T ss_pred HHHhhhHHHHHHhcCCC----------CCcchhhhe
Confidence 99999999999999987 456666654
No 63
>PF00306 ATP-synt_ab_C: ATP synthase alpha/beta chain, C terminal domain; InterPro: IPR000793 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the C-terminal domain, which forms a left-handed superhelix composed of 4-5 individual helices. The C-terminal domain can vary between the alpha and beta subunits, and between different ATPases []. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3OAA_U 2F43_B 1MAB_B 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B ....
Probab=99.26 E-value=2.5e-11 Score=105.43 Aligned_cols=96 Identities=32% Similarity=0.536 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcCCCcccceeccCCCeeec-HHHHHHHHHHhhc
Q psy2896 360 YKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVARARKMQRFLSQPFHVAEVFTGKSGKYVS-LKDTLNGFHLISS 438 (467)
Q Consensus 360 ~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~i~~fl~Q~~~~~e~~t~~~~~~~~-~~et~~~l~~i~~ 438 (467)
++++++++.+|++|+|++++++++|.++++++++..+.++++|+.||+|+.+.+. +.++..++ +++++..++++++
T Consensus 1 k~v~~~l~~~Laq~~EL~~~~q~vG~d~L~~~~k~~l~~g~~i~e~LkQ~~~~~~---~~~~q~~~~~~~~~~~~~~~~~ 77 (113)
T PF00306_consen 1 KKVAGQLKLILAQYRELEEFVQFVGSDALDDEDKLILERGRRIREFLKQNAFDPV---PLEKQYVMILEETIDLFYAILR 77 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSTCSTHHHHHHHHHHHHHHHHT-BSTTTTT---SSHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcCCCCCCCC---cCcchhhhHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999999999999999999999988432 33344448 9999999999999
Q ss_pred CCCCCCchhhhcccCCHHHH
Q psy2896 439 GELDNIPEQAFYMVGTIDEA 458 (467)
Q Consensus 439 g~~d~~~~~~~~~~~~~~~~ 458 (467)
|+|+++|+..+.++++..+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~ 97 (113)
T PF00306_consen 78 GKFDDIPEEELEKIETKDIE 97 (113)
T ss_dssp TTTTTS-GGGHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHhhHHHH
Confidence 99999999999999887654
No 64
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.23 E-value=7.1e-10 Score=99.24 Aligned_cols=160 Identities=31% Similarity=0.459 Sum_probs=118.2
Q ss_pred eeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHH
Q psy2896 144 VGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRL 223 (467)
Q Consensus 144 ~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~ 223 (467)
+.|+|++|+|||+++..++...... ...++|.-..+...+..+....+...+..+ +..++....+.......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 73 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK-GGKVVYVDIEEEIEELTERLIGESLKGALD-------NLIIVFATADDPAAARL 73 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc-CCEEEEEECCcchHHHHHHHhhhhhccccc-------cEEEEEcCCCCCcHHHH
Confidence 6799999999999999999987653 345666666666666654433332222232 55555555555444333
Q ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCCCCCceeEEEEEE
Q psy2896 224 RVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQAVY 303 (467)
Q Consensus 224 ~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~~~GSiT~~~tv~ 303 (467)
. .++.++....+..++|+|+++.+.+...+. ..+++..+...+.+|.+++ +...+|.+.+..
T Consensus 74 ~------~~~~~~~~~~~~~~lviDe~~~~~~~~~~~---------~~~~~~~~~~~l~~l~~~~---~~~~~~vv~~~~ 135 (165)
T cd01120 74 L------SKAERLRERGGDDLIILDELTRLVRALREI---------REGYPGELDEELRELLERA---RKGGVTVIFTLQ 135 (165)
T ss_pred H------HHHHHHHhCCCCEEEEEEcHHHHHHHHHHH---------HhcCChHHHHHHHHHHHHH---hcCCceEEEEEe
Confidence 2 556777777888899999999999876653 3467777888899999887 347999999999
Q ss_pred ecCCCCCCC----cccccccccceEEEeeh
Q psy2896 304 VPADDLTDP----SPATTFAHLDSTVVLSR 329 (467)
Q Consensus 304 ~~~~d~~dp----i~~~~~~i~dG~ivLsr 329 (467)
...++..+| ++..+..+.|+.|+|+|
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 165 (165)
T cd01120 136 VPSGDKGDPRLTRGAQNLEDIADTVIVLSR 165 (165)
T ss_pred cCCccccCcccccCccceeeecceEEEEeC
Confidence 999888888 88999999999999986
No 65
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=98.73 E-value=2.6e-07 Score=88.55 Aligned_cols=181 Identities=16% Similarity=0.121 Sum_probs=96.7
Q ss_pred ccccceeeecccc--cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCC
Q psy2896 125 LETGIKVIDLICP--FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDK 202 (467)
Q Consensus 125 l~TGIr~ID~l~p--igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~ 202 (467)
+.|||..+|.++. +.+|.-+.|+|+||+|||+++.+++.+.++.+..+.++..=+...+.+.++..... ....
T Consensus 1 i~TGi~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~-~~~~---- 75 (218)
T cd01394 1 LPTGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRP-ERAA---- 75 (218)
T ss_pred CCcchhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHCh-Hhhh----
Confidence 4799999999996 88999999999999999999999999876654344444321111111112111110 0011
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHH
Q psy2896 203 PEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMG 282 (467)
Q Consensus 203 ~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~ 282 (467)
..++++...+. .+. ...+...+.+...+ .-++++||++.+.++..+-.. + .......+.
T Consensus 76 ----~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~-~~lvvIDsi~~l~~~~~~~~~--------~--~~~~~~~l~ 134 (218)
T cd01394 76 ----SSIIVFEPMDF--NEQ----GRAIQETETFADEK-VDLVVVDSATALYRLELGDDD--------T--TIKNYRELA 134 (218)
T ss_pred ----cCEEEEeCCCH--HHH----HHHHHHHHHHHhcC-CcEEEEechHHhhhHHhcCcc--------c--hHHHHHHHH
Confidence 23455554431 111 12233333444433 568889999998765332110 0 011112222
Q ss_pred HHHHHhcC-CCCCceeEEEEEEecCCC---CCCC-cccccccccceEEEeehhh
Q psy2896 283 YLQERIAS-TKKGSITSIQAVYVPADD---LTDP-SPATTFAHLDSTVVLSRDI 331 (467)
Q Consensus 283 ~l~ERag~-~~~GSiT~~~tv~~~~~d---~~dp-i~~~~~~i~dG~ivLsr~L 331 (467)
+++.+.-. .+.-.+|++.|..+..+- ...| .......+.|+-|.|++.-
T Consensus 135 ~~~~~L~~~a~~~~~~vi~t~q~~~~~~~~~~~p~~g~~~~~~~d~~i~l~~~~ 188 (218)
T cd01394 135 KQLTFLLWLARKHDVAVVITNQVYSDVGSGSVRPLGGHTLEHWSKVILRLEKLR 188 (218)
T ss_pred HHHHHHHHHHHHhCCEEEEecCCEEcCCCCcccccCCcchhcceeEEEEEEEcC
Confidence 22111000 023467888776654211 1112 1224677889999998764
No 66
>PF02874 ATP-synt_ab_N: ATP synthase alpha/beta family, beta-barrel domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR004100 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the N-terminal domain, which forms a closed beta-barrel with Greek-key topology. ; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015992 proton transport, 0046034 ATP metabolic process, 0016469 proton-transporting two-sector ATPase complex; PDB: 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B 1E79_B 1E1R_C 2XND_C ....
Probab=98.55 E-value=2.3e-07 Score=73.13 Aligned_cols=65 Identities=38% Similarity=0.592 Sum_probs=54.9
Q ss_pred EEEEEcceEEEEecCCCcceeeeeeeee----CceEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecC
Q psy2896 6 IIQCIGSVVDVEFPHNMVPKIYNALKIE----NSELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTG 71 (467)
Q Consensus 6 V~~V~G~vi~a~g~~~~~~~i~~~v~i~----~~~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg 71 (467)
|++|.|+++++++.....+.+++.+.++ ++...+||+++ +++.+++|+|++++||++|++|++||
T Consensus 1 V~~v~G~vv~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~Vv~~-~~~~v~~~~~~~t~Gl~~G~~V~~tG 69 (69)
T PF02874_consen 1 VTQVVGPVVEVEFGPGVLPGIGEAVEVELVDFGNGVLGEVVGL-DEDEVRLQVFGSTDGLSRGTEVRFTG 69 (69)
T ss_dssp EEEEECTEEEEECSEEEEEETTTEEEEEEEEETTEEEEEEEEE-ETTEEEEEESSSGTTSBTTCEEEEEE
T ss_pred CccccceEEEEEcCCCCCCCccEEEEEecccceeeeeeeeccc-CccEEEEEEecCCCCCCCCCEEEcCc
Confidence 7899999999977554456677888776 35789999996 56899999999999999999999985
No 67
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=98.49 E-value=7.1e-07 Score=86.06 Aligned_cols=181 Identities=18% Similarity=0.144 Sum_probs=97.6
Q ss_pred ccccceeeeccc--ccccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcc-cCCC
Q psy2896 125 LETGIKVIDLIC--PFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKV-VNLD 201 (467)
Q Consensus 125 l~TGIr~ID~l~--pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~-~~~~ 201 (467)
+.|||.-+|.++ .+-+|.-++|.|++|+|||+++.+++.+.+++.+.-++|+..-|..+++.+..+.+ |. ++++
T Consensus 1 V~TGI~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~---g~d~~~~ 77 (226)
T PF06745_consen 1 VPTGIPGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSF---GWDLEEY 77 (226)
T ss_dssp E--SSTTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTT---TS-HHHH
T ss_pred CCCCchhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHc---CCcHHHH
Confidence 369999999999 49999999999999999999999999877665245567776766666655443332 21 1000
Q ss_pred CCCCceEEEEEeCCCCCHH-HHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHH
Q psy2896 202 KPEKSKVSMVYGQMNEPSG-NRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEE 280 (467)
Q Consensus 202 ~~~~~~~vvv~~t~d~~~~-~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~ 280 (467)
.+ ..+ ..+......... .....-...-.+.+.+.+.+. -.+++||+|-+ .+.. -|..+...
T Consensus 78 ~~-~g~-l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~-~~vVIDsls~l-~~~~--------------~~~~~r~~ 139 (226)
T PF06745_consen 78 ED-SGK-LKIIDAFPERIGWSPNDLEELLSKIREAIEELKP-DRVVIDSLSAL-LLYD--------------DPEELRRF 139 (226)
T ss_dssp HH-TTS-EEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTS-SEEEEETHHHH-TTSS--------------SGGGHHHH
T ss_pred hh-cCC-EEEEecccccccccccCHHHHHHHHHHHHHhcCC-CEEEEECHHHH-hhcC--------------CHHHHHHH
Confidence 00 002 333333221100 001112223444455555444 57788999965 1111 01111222
Q ss_pred HHHHHHHhcCCCCCceeEEEEEEecCCCCCCCccccccc-ccceEEEeehh
Q psy2896 281 MGYLQERIASTKKGSITSIQAVYVPADDLTDPSPATTFA-HLDSTVVLSRD 330 (467)
Q Consensus 281 l~~l~ERag~~~~GSiT~~~tv~~~~~d~~dpi~~~~~~-i~dG~ivLsr~ 330 (467)
+-.|+... +.-.+|++.|...+.+..... ...+.. +.||-|.|+..
T Consensus 140 l~~l~~~l---~~~~~t~llt~~~~~~~~~~~-~~~i~~~l~D~vI~L~~~ 186 (226)
T PF06745_consen 140 LRALIKFL---KSRGVTTLLTSEMPSGSEDDG-TFGIEHYLADGVIELRYE 186 (226)
T ss_dssp HHHHHHHH---HHTTEEEEEEEEESSSSSSSS-STSHHHHHSSEEEEEEEE
T ss_pred HHHHHHHH---HHCCCEEEEEEccccCccccc-ccchhhhcccEEEEEEEE
Confidence 33344333 112367788887654322222 123444 89999999865
No 68
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.46 E-value=6e-06 Score=79.56 Aligned_cols=54 Identities=30% Similarity=0.454 Sum_probs=45.7
Q ss_pred cccccccceeeecccc--cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEE
Q psy2896 122 QELLETGIKVIDLICP--FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFT 176 (467)
Q Consensus 122 ~~~l~TGIr~ID~l~p--igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~ 176 (467)
++.+.|||..+|-++. +-+|.-+.|+|+||+|||+++.+++.+.++.+ .-++|.
T Consensus 2 ~~~i~tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~-~~v~yi 57 (225)
T PRK09361 2 DERLPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNG-KKVIYI 57 (225)
T ss_pred CccccCCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEE
Confidence 4678999999999995 88999999999999999999999999887653 334443
No 69
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=98.45 E-value=4e-06 Score=82.83 Aligned_cols=199 Identities=18% Similarity=0.116 Sum_probs=117.7
Q ss_pred ccccccceeeecccc--cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCC
Q psy2896 123 ELLETGIKVIDLICP--FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNL 200 (467)
Q Consensus 123 ~~l~TGIr~ID~l~p--igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~ 200 (467)
+.+.|||.-+|-++. +-+|..++|.|+||+|||+++.+.+.+.++. +.-++|+..-|...++.+....+.-. ++.
T Consensus 3 ~~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~-ge~vlyvs~~e~~~~l~~~~~~~g~d--~~~ 79 (260)
T COG0467 3 ERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGARE-GEPVLYVSTEESPEELLENARSFGWD--LEV 79 (260)
T ss_pred ccccCCCcchHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhc-CCcEEEEEecCCHHHHHHHHHHcCCC--HHH
Confidence 467899999999999 8999999999999999999999999987764 56799999999999888766533110 000
Q ss_pred CCCCCceEEEEEeCCCCCHH---H--HHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcC
Q psy2896 201 DKPEKSKVSMVYGQMNEPSG---N--RLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQP 275 (467)
Q Consensus 201 ~~~~~~~~vvv~~t~d~~~~---~--r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~ 275 (467)
+.+...-.++-..+...+.. . -.....+.-.+-+...+.+ ...+++||++.+......-... -
T Consensus 80 ~~~~g~l~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~-~~~~ViDsi~~~~~~~~~~~~~-----------r 147 (260)
T COG0467 80 YIEKGKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKEG-ADRVVIDSITELTLYLNDPALV-----------R 147 (260)
T ss_pred HhhcCCEEEEEccccccccccccccCCccHHHHHHHHHHHHHHhC-CCEEEEeCCchHhhhcCchHHH-----------H
Confidence 00000011111111111110 0 1233445666667777766 6677789999644432221110 0
Q ss_pred chhHHHHHHHHHhcCCCCCceeEEEEEEecCCCCCCCcccccccccceEEEeehhhhhcCCCC-cccCCC
Q psy2896 276 TLAEEMGYLQERIASTKKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYP-AIDPLD 344 (467)
Q Consensus 276 ~~f~~l~~l~ERag~~~~GSiT~~~tv~~~~~d~~dpi~~~~~~i~dG~ivLsr~La~~g~~P-AID~l~ 344 (467)
.....+.++.+ +.| +|++.+...+.+...+. ...-.+.||.|.|+....+.+.+- .+.+.+
T Consensus 148 ~~~~~l~~~~~-----~~~-~t~~~~~~~~~~~~~~~--~~~~~~vdgvI~l~~~~~~~~~~r~~~~i~k 209 (260)
T COG0467 148 RILLLLKRFLK-----KLG-VTSLLTTEAPVEERGES--GVEEYIVDGVIRLDLKEIEGGGDRRYLRILK 209 (260)
T ss_pred HHHHHHHHHHH-----hCC-CEEEEEecccccCCCcc--ceEEEEEEEEEEEeeecccCceEEEEEEEEe
Confidence 11222333332 244 77777665433332221 233449999999999876644333 444433
No 70
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=98.33 E-value=1.2e-05 Score=79.80 Aligned_cols=181 Identities=13% Similarity=0.072 Sum_probs=96.0
Q ss_pred ccccceeeeccc----------------ccccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHH-H
Q psy2896 125 LETGIKVIDLIC----------------PFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGN-D 187 (467)
Q Consensus 125 l~TGIr~ID~l~----------------pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~-e 187 (467)
+.|||+-+|.++ -+-+|.-+.|.|+||+|||+++.+++.+.++++..+.++.+ -+..+... +
T Consensus 4 ~~tGi~glD~~l~~~~~~~~~~~~~~~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~-Ee~~~~~~~~ 82 (259)
T TIGR03878 4 VPTGVEGLDELFFKVEIEEGKIVRKPLGGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV-ESPANFVYTS 82 (259)
T ss_pred ccCCchhHHHhhccccccccccccccCCCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe-cCCchHHHHH
Confidence 579999999996 47899999999999999999999999987665434444444 24333222 2
Q ss_pred HHHHHHhhcc-cCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHHHHhHHHHHhcCC
Q psy2896 188 FYHEMIEAKV-VNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGR 266 (467)
Q Consensus 188 ~~~~~~~~~~-~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a~A~reis~~~ge 266 (467)
+.......|. ++. ...+ +++......... + ..+..-+....+..++.+.-++++||++.+.+...+.
T Consensus 83 l~~~a~~~g~d~~~---~~~~-l~~id~~~~~~~-~-~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~~~~------ 150 (259)
T TIGR03878 83 LKERAKAMGVDFDK---IEEN-IILIDAASSTEL-R-ENVPNLLATLAYAIKEYKVKNTVIDSITGLYEAKEMM------ 150 (259)
T ss_pred HHHHHHHcCCCHHH---HhCC-EEEEECCCchhh-h-hhHHHHHHHHHHHHHhhCCCEEEEcCchHhcccchHH------
Confidence 3222222221 000 0013 444443322111 1 1122223333333334334477889998653321100
Q ss_pred CCCCCCCcCchhHHHHHHHHHhcCCCCCceeEEEEEEecCC--CCC-CCccc-ccccccceEEEeehhh
Q psy2896 267 MPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQAVYVPAD--DLT-DPSPA-TTFAHLDSTVVLSRDI 331 (467)
Q Consensus 267 ~p~~~gyp~~~f~~l~~l~ERag~~~~GSiT~~~tv~~~~~--d~~-dpi~~-~~~~i~dG~ivLsr~L 331 (467)
+ ......|-+++.+ -.+|++.+..+..+ +.. +|... .+..+.||-|.|+...
T Consensus 151 ------~-r~~~~~L~~~lk~------~~~t~ll~~e~~~~~~~~~~~~~~~~~~~~l~D~vI~L~~~~ 206 (259)
T TIGR03878 151 ------A-REIVRQLFNFMKK------WYQTALFVSQKRSGHEELSAEAAGGYAVSHIVDGTIVLAKQL 206 (259)
T ss_pred ------H-HHHHHHHHHHHHH------cCCeEEEEeccccCcccccccccCCcceeEeeccEEEEeeee
Confidence 0 0111222333322 24588777654332 111 34333 5788899999999653
No 71
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=98.28 E-value=1.1e-05 Score=87.50 Aligned_cols=195 Identities=13% Similarity=0.103 Sum_probs=107.4
Q ss_pred ccccccccceeeecccc--cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcc-
Q psy2896 121 SQELLETGIKVIDLICP--FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKV- 197 (467)
Q Consensus 121 ~~~~l~TGIr~ID~l~p--igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~- 197 (467)
..+.+.|||..+|.++. +-+|.-+.|.|++|+|||+++.+++.+.++++ .-++|...-+..+++.+-...+ |.
T Consensus 251 ~~~~~~tGi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g-~~~~yis~e~~~~~i~~~~~~~---g~~ 326 (509)
T PRK09302 251 SNERISSGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRRG-ERCLLFAFEESRAQLIRNARSW---GID 326 (509)
T ss_pred ccccccCCcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCC-CcEEEEEecCCHHHHHHHHHHc---CCC
Confidence 46678999999999986 88999999999999999999999998876543 4455555555555554333322 21
Q ss_pred cCCCCCCCceEEEEEe-CCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCc
Q psy2896 198 VNLDKPEKSKVSMVYG-QMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPT 276 (467)
Q Consensus 198 ~~~~~~~~~~~vvv~~-t~d~~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~ 276 (467)
++++.+ ..+..++.. +......+. ...+.+...+.+. -++++||+|-+..+... ..
T Consensus 327 ~~~~~~-~g~l~i~~~~~~~~~~~~~------~~~i~~~i~~~~~-~~vVIDslt~l~~~~~~---------------~~ 383 (509)
T PRK09302 327 LEKMEE-KGLLKIICARPESYGLEDH------LIIIKREIEEFKP-SRVAIDPLSALARGGSL---------------NE 383 (509)
T ss_pred hHHHhh-cCCceeecCCcccCCHHHH------HHHHHHHHHHcCC-CEEEEcCHHHHHHhCCH---------------HH
Confidence 110000 001112211 111111111 1223333333333 47899999977543210 01
Q ss_pred hhHHHHHHHHHhcCCCCCceeEEEEEEecCCCCCCCcc-cccccccceEEEeehhhhhcCCCCcccCCCC
Q psy2896 277 LAEEMGYLQERIASTKKGSITSIQAVYVPADDLTDPSP-ATTFAHLDSTVVLSRDIASLGIYPAIDPLDS 345 (467)
Q Consensus 277 ~f~~l~~l~ERag~~~~GSiT~~~tv~~~~~d~~dpi~-~~~~~i~dG~ivLsr~La~~g~~PAID~l~S 345 (467)
+-..+..|...+ +.-.+|.+.|..++...-.++.. ..+.++.||-|.|+..--.....-.|.+.+.
T Consensus 384 ~~~~l~~l~~~~---k~~~~t~l~t~~~~~~~g~~~~~~~~~~~l~D~vI~L~~~~~~~~~~R~l~I~K~ 450 (509)
T PRK09302 384 FRQFVIRLTDYL---KSEEITGLFTNLTPDFMGSHSITESHISSLTDTWILLQYVEINGEMNRALYVLKM 450 (509)
T ss_pred HHHHHHHHHHHH---HhCCCeEEEEeccccccCCCCCCcCceEEeeeEEEEEEEeecCCeeEEEEEEEEc
Confidence 111122232222 12236888887766532222222 3578899999999875433333344555554
No 72
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.26 E-value=7.4e-06 Score=79.54 Aligned_cols=196 Identities=11% Similarity=0.077 Sum_probs=103.2
Q ss_pred cccccccceeeecccc--cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcc-c
Q psy2896 122 QELLETGIKVIDLICP--FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKV-V 198 (467)
Q Consensus 122 ~~~l~TGIr~ID~l~p--igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~-~ 198 (467)
.+.+.|||..+|-++. +-+|.-+.|.|++|+|||+++.+++.+.+++ +..++|...-+..++ +++.+...|. +
T Consensus 4 ~~~~~tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~-g~~~~y~~~e~~~~~---~~~~~~~~g~~~ 79 (234)
T PRK06067 4 KEIISTGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQ-GKKVYVITTENTSKS---YLKQMESVKIDI 79 (234)
T ss_pred ceEEecCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhC-CCEEEEEEcCCCHHH---HHHHHHHCCCCh
Confidence 4578999999999986 8899999999999999999999998876554 455666655555444 4444443332 1
Q ss_pred CCCCCCCceEEEEEe-CCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCch
Q psy2896 199 NLDKPEKSKVSMVYG-QMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTL 277 (467)
Q Consensus 199 ~~~~~~~~~~vvv~~-t~d~~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~ 277 (467)
.++- ...+..++-. ...-.+. . .....-+.....+..+.+.-++++||+|-+...... ..+
T Consensus 80 ~~~~-~~g~l~i~~~~~~~~~~~-~-~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~---------------~~~ 141 (234)
T PRK06067 80 SDFF-LWGYLRIFPLNTEGFEWN-S-TLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEE---------------DDI 141 (234)
T ss_pred hHHH-hCCCceEEeccccccccC-c-chHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCH---------------HHH
Confidence 1000 0011112111 0000000 0 001112222233333334457899999955322111 011
Q ss_pred hHHHHHHHHHhcCCCCCceeEEEEEEecCCCCCCCcccccccccceEEEeehhhhhcCCCCcccCCCC
Q psy2896 278 AEEMGYLQERIASTKKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDS 345 (467)
Q Consensus 278 f~~l~~l~ERag~~~~GSiT~~~tv~~~~~d~~dpi~~~~~~i~dG~ivLsr~La~~g~~PAID~l~S 345 (467)
..-+..+ .+.. +.| .|++.+... ....+..-+.+..+.||.|.|+.........-.+.+.+.
T Consensus 142 ~~~l~~l-~~l~--~~g-~tvllt~~~--~~~~~~~~~~~~~l~DgvI~L~~~~~~~~~~r~l~i~K~ 203 (234)
T PRK06067 142 LNFLTEA-KNLV--DLG-KTILITLHP--YAFSEELLSRIRSICDVYLKLRAEQIGGRYVKVLEVVKL 203 (234)
T ss_pred HHHHHHH-HHHH--hCC-CEEEEEecC--CcCCHHHHHHHHhheEEEEEEEeeccCCEEeEEEEEEhh
Confidence 1111112 1111 123 466665543 222222334578889999999876554444455666554
No 73
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=98.25 E-value=2e-06 Score=87.83 Aligned_cols=111 Identities=20% Similarity=0.322 Sum_probs=75.7
Q ss_pred cccccccceeeecccc---cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcc-
Q psy2896 122 QELLETGIKVIDLICP---FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKV- 197 (467)
Q Consensus 122 ~~~l~TGIr~ID~l~p---igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~- 197 (467)
.+.+.||+..+|.++. +-+|.-+.|+|++|+|||+|+.+++.+.++.+ ..++|.-. |..-+. ++.+.+ |+
T Consensus 33 ~~~isTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g-~~~vyId~-E~~~~~-~~a~~l---Gvd 106 (325)
T cd00983 33 VEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLG-GTVAFIDA-EHALDP-VYAKKL---GVD 106 (325)
T ss_pred CceecCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcC-CCEEEECc-cccHHH-HHHHHc---CCC
Confidence 3468999999999988 77899999999999999999999999876653 44555422 222221 222222 32
Q ss_pred cCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHHH
Q psy2896 198 VNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTL 255 (467)
Q Consensus 198 ~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a~ 255 (467)
++ + ++++.+.+ ..-++.+++.+..++.-.++++||++.+..
T Consensus 107 ~~-------~-l~v~~p~~---------~eq~l~i~~~li~s~~~~lIVIDSvaal~~ 147 (325)
T cd00983 107 LD-------N-LLISQPDT---------GEQALEIADSLVRSGAVDLIVVDSVAALVP 147 (325)
T ss_pred HH-------H-heecCCCC---------HHHHHHHHHHHHhccCCCEEEEcchHhhcc
Confidence 11 3 33333322 233566778887788888999999998764
No 74
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=98.24 E-value=3.1e-06 Score=86.42 Aligned_cols=111 Identities=22% Similarity=0.302 Sum_probs=73.8
Q ss_pred ccccccceeeecccc---cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccC
Q psy2896 123 ELLETGIKVIDLICP---FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVN 199 (467)
Q Consensus 123 ~~l~TGIr~ID~l~p---igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~ 199 (467)
+.+.||+..+|.++. +-+|.-+.|+|++|+|||+|+.+++.+.++.+ ..++|.-.=+.... ++ +...|+ +
T Consensus 34 ~~i~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g-~~v~yId~E~~~~~--~~---a~~lGv-d 106 (321)
T TIGR02012 34 ETISTGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAG-GTAAFIDAEHALDP--VY---ARKLGV-D 106 (321)
T ss_pred ceecCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcC-CcEEEEcccchhHH--HH---HHHcCC-C
Confidence 468899999999987 88999999999999999999999999877653 34444422111111 12 222232 1
Q ss_pred CCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHHH
Q psy2896 200 LDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTL 255 (467)
Q Consensus 200 ~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a~ 255 (467)
. ..++++.+.+ . ..++.+++.+..++.--++++||++.+..
T Consensus 107 ~------~~l~v~~p~~---~------eq~l~~~~~li~~~~~~lIVIDSv~al~~ 147 (321)
T TIGR02012 107 I------DNLLVSQPDT---G------EQALEIAETLVRSGAVDIIVVDSVAALVP 147 (321)
T ss_pred H------HHeEEecCCC---H------HHHHHHHHHHhhccCCcEEEEcchhhhcc
Confidence 0 2233333322 2 23456677777777888999999998764
No 75
>PRK04328 hypothetical protein; Provisional
Probab=98.22 E-value=1.1e-05 Score=79.64 Aligned_cols=67 Identities=22% Similarity=0.263 Sum_probs=55.4
Q ss_pred cccccceeeecccc--cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHH
Q psy2896 124 LLETGIKVIDLICP--FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHE 191 (467)
Q Consensus 124 ~l~TGIr~ID~l~p--igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~ 191 (467)
.+.|||.-+|.++. +-+|.-++|.|+||+|||+|+.+++.+.+++ +.-++|....|..+++.+..+.
T Consensus 4 rv~tGi~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~-ge~~lyis~ee~~~~i~~~~~~ 72 (249)
T PRK04328 4 RVKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGVYVALEEHPVQVRRNMRQ 72 (249)
T ss_pred eecCCchhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEeeCCHHHHHHHHHH
Confidence 57899999999986 7799999999999999999999999875544 5668888888888876554443
No 76
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.21 E-value=1.7e-05 Score=85.51 Aligned_cols=193 Identities=13% Similarity=0.070 Sum_probs=116.1
Q ss_pred cccccccccceeeecccc--cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcc
Q psy2896 120 SSQELLETGIKVIDLICP--FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKV 197 (467)
Q Consensus 120 ~~~~~l~TGIr~ID~l~p--igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~ 197 (467)
...+.+.|||.-+|.++. +.+|.-++|.|+||+|||+|+.+++.+.+++ ..-++|..--|..+++..-.+.+ |.
T Consensus 240 ~~~~~~~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~-ge~~~y~s~eEs~~~i~~~~~~l---g~ 315 (484)
T TIGR02655 240 SSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACAN-KERAILFAYEESRAQLLRNAYSW---GI 315 (484)
T ss_pred ccccccCCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEeeCCHHHHHHHHHHc---CC
Confidence 356779999999999987 9999999999999999999999999987664 45677777777766665433333 31
Q ss_pred -cCCCCCCCceEEEEEeC--CCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCc
Q psy2896 198 -VNLDKPEKSKVSMVYGQ--MNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQ 274 (467)
Q Consensus 198 -~~~~~~~~~~~vvv~~t--~d~~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp 274 (467)
++++.+ +..+.+... ....+.. .+-.+-+...+.+. -++++||++-+..+... .
T Consensus 316 ~~~~~~~--~g~l~~~~~~p~~~~~~~------~~~~i~~~i~~~~~-~~vvIDsi~~~~~~~~~-----------~--- 372 (484)
T TIGR02655 316 DFEEMEQ--QGLLKIICAYPESAGLED------HLQIIKSEIADFKP-ARIAIDSLSALARGVSN-----------N--- 372 (484)
T ss_pred ChHHHhh--CCcEEEEEcccccCChHH------HHHHHHHHHHHcCC-CEEEEcCHHHHHHhcCH-----------H---
Confidence 110000 012333222 1111111 22222233333344 46788999987654311 0
Q ss_pred CchhHHHHHHHHHhcCCCCCceeEEEEEEecC--CCCCCCcc-cccccccceEEEeehhhhhcCCCCcccCCCC
Q psy2896 275 PTLAEEMGYLQERIASTKKGSITSIQAVYVPA--DDLTDPSP-ATTFAHLDSTVVLSRDIASLGIYPAIDPLDS 345 (467)
Q Consensus 275 ~~~f~~l~~l~ERag~~~~GSiT~~~tv~~~~--~d~~dpi~-~~~~~i~dG~ivLsr~La~~g~~PAID~l~S 345 (467)
.+-..+.+|.+-+ +.-.||.+.|..+++ ++ .+++ ..+-++.|+-|.|...-.+....-+|-|+++
T Consensus 373 -~~r~~~~~l~~~l---k~~~it~~~t~~~~~~~~~--~~~~~~~~s~l~D~ii~l~~~e~~g~~~r~i~V~K~ 440 (484)
T TIGR02655 373 -AFRQFVIGVTGYA---KQEEITGFFTNTSDQFMGS--HSITDSHISTITDTILMLQYVEIRGEMSRAINVFKM 440 (484)
T ss_pred -HHHHHHHHHHHHH---hhCCCeEEEeecccccccC--CccCCCCeeEeeeEEEEEEEEecCCEEEEEEEEEEc
Confidence 0011122333222 244678888877664 22 2233 2567899999999776665556667777765
No 77
>PRK09354 recA recombinase A; Provisional
Probab=98.20 E-value=4e-06 Score=86.35 Aligned_cols=111 Identities=23% Similarity=0.356 Sum_probs=76.0
Q ss_pred cccccccceeeecccc---cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcc-
Q psy2896 122 QELLETGIKVIDLICP---FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKV- 197 (467)
Q Consensus 122 ~~~l~TGIr~ID~l~p---igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~- 197 (467)
.+.+.||+..+|.++. +-+|.-+.|+|++|+|||+|+.+++.+.++. +..++|.-.=+.... ++.+.+ |+
T Consensus 38 ~~~isTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~-G~~~~yId~E~s~~~--~~a~~l---Gvd 111 (349)
T PRK09354 38 VEVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKA-GGTAAFIDAEHALDP--VYAKKL---GVD 111 (349)
T ss_pred CceecCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEECCccchHH--HHHHHc---CCC
Confidence 4478999999999988 7789999999999999999999999987664 345555432222221 222222 32
Q ss_pred cCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHHH
Q psy2896 198 VNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTL 255 (467)
Q Consensus 198 ~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a~ 255 (467)
++ + ++++ +.+. . ..++.+++.+..++.-.++++||++.+..
T Consensus 112 ld-------~-lli~-qp~~--~------Eq~l~i~~~li~s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 112 ID-------N-LLVS-QPDT--G------EQALEIADTLVRSGAVDLIVVDSVAALVP 152 (349)
T ss_pred HH-------H-eEEe-cCCC--H------HHHHHHHHHHhhcCCCCEEEEeChhhhcc
Confidence 22 3 3333 2221 2 23466777777788888999999998764
No 78
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=98.15 E-value=1.3e-05 Score=77.02 Aligned_cols=44 Identities=27% Similarity=0.392 Sum_probs=39.8
Q ss_pred ccccceeeecccc--cccCceeeeecCCCCCchhhHHHHHHHHHhh
Q psy2896 125 LETGIKVIDLICP--FSKGGKVGLFGGAGVGKTVNMMELINNIAKA 168 (467)
Q Consensus 125 l~TGIr~ID~l~p--igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~ 168 (467)
+.||+..+|-++. +-+|+.+.|+|++|+|||+|+.+++.+....
T Consensus 1 i~tG~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~ 46 (226)
T cd01393 1 ISTGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLP 46 (226)
T ss_pred CCCCcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcc
Confidence 4799999999884 9999999999999999999999999987654
No 79
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=98.14 E-value=6.1e-05 Score=73.53 Aligned_cols=66 Identities=21% Similarity=0.260 Sum_probs=53.9
Q ss_pred cccccceeeecccc--cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHH
Q psy2896 124 LLETGIKVIDLICP--FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYH 190 (467)
Q Consensus 124 ~l~TGIr~ID~l~p--igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~ 190 (467)
.+.|||.-+|-++. +-+|.-++|.|+||+|||+++.+++.+.+++ +.-++|....|..+++.+..+
T Consensus 2 ri~tGi~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~-ge~~lyvs~ee~~~~i~~~~~ 69 (237)
T TIGR03877 2 RVKTGIPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGIYVALEEHPVQVRRNMA 69 (237)
T ss_pred ccccCcHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcEEEEEeeCCHHHHHHHHH
Confidence 46899999999876 8899999999999999999999999876543 566777777777776655433
No 80
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.11 E-value=1.9e-05 Score=76.17 Aligned_cols=195 Identities=11% Similarity=0.037 Sum_probs=100.8
Q ss_pred ccccceeeecccc--cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcc-cCCC
Q psy2896 125 LETGIKVIDLICP--FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKV-VNLD 201 (467)
Q Consensus 125 l~TGIr~ID~l~p--igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~-~~~~ 201 (467)
+.|||.-+|-++. +-+|..+.|.|+||+|||+++.+++.+.+++ +.-++|....+..+++.+. ....|. +..+
T Consensus 2 i~tGi~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~-g~~~~~is~e~~~~~i~~~---~~~~g~~~~~~ 77 (229)
T TIGR03881 2 LSTGVEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRD-GDPVIYVTTEESRESIIRQ---AAQFGMDFEKA 77 (229)
T ss_pred cCCChhhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhc-CCeEEEEEccCCHHHHHHH---HHHhCCCHHHH
Confidence 5799999999875 8899999999999999999999998876554 3445555555555444332 222221 0000
Q ss_pred CCCCceEEEEEeCCCCC----HHHHHHHHHHHHHHHHHHHH-CC-CcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcC
Q psy2896 202 KPEKSKVSMVYGQMNEP----SGNRLRVALTGLTIAEGFRD-EG-KDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQP 275 (467)
Q Consensus 202 ~~~~~~~vvv~~t~d~~----~~~r~~~~~~a~~~AE~fr~-~g-~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~ 275 (467)
.+ .....+....... ..........-...++...+ .| +.-++++||++-+.. .+|...+
T Consensus 78 ~~--~~~l~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~---------~~~~~~r---- 142 (229)
T TIGR03881 78 IE--EGKLVIIDALMKEKEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWL---------DKPAMAR---- 142 (229)
T ss_pred hh--cCCEEEEEccccccccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhc---------cChHHHH----
Confidence 00 0112222211100 00000011111222222222 24 356889999996532 2221100
Q ss_pred chhHHHHHHHHHhcCCCCCceeEEEEEEecCCCCCCCcccccccccceEEEeehhhhhcCCCCcccCCCC
Q psy2896 276 TLAEEMGYLQERIASTKKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDS 345 (467)
Q Consensus 276 ~~f~~l~~l~ERag~~~~GSiT~~~tv~~~~~d~~dpi~~~~~~i~dG~ivLsr~La~~g~~PAID~l~S 345 (467)
.....+.+++ +.--+|.+.+.... ..-..+....+-.+.||-|.|.....+...--.|.+.+.
T Consensus 143 ~~~~~l~~~l------~~~~~tvil~~~~~-~~~~~~~~~~~~~l~D~vI~L~~~~~~~~~~R~i~i~K~ 205 (229)
T TIGR03881 143 KYSYYLKRVL------NRWNFTILLTSQYA-ITTSQAFGFGIEHVADGIIRFRKVVVDGELRRYLIVEKM 205 (229)
T ss_pred HHHHHHHHHH------HhCCCEEEEEeccc-ccCCCCcccceEEEEeEEEEEEEeccCCcEEEEEEEEec
Confidence 1111222322 12356777776532 111223333566799999999976554333344665554
No 81
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=98.09 E-value=2e-05 Score=76.18 Aligned_cols=42 Identities=31% Similarity=0.437 Sum_probs=38.4
Q ss_pred ccccceeeecccc--cccCceeeeecCCCCCchhhHHHHHHHHH
Q psy2896 125 LETGIKVIDLICP--FSKGGKVGLFGGAGVGKTVNMMELINNIA 166 (467)
Q Consensus 125 l~TGIr~ID~l~p--igrGqr~~I~g~~g~GKt~L~~~i~~~~~ 166 (467)
+.||++.+|.++. +.+|..+.|.|++|+|||+|+.+++.+..
T Consensus 1 ~~tG~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~ 44 (235)
T cd01123 1 LTTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQ 44 (235)
T ss_pred CCCCchhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHee
Confidence 4799999999987 88999999999999999999999997644
No 82
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=98.08 E-value=1.2e-05 Score=80.42 Aligned_cols=113 Identities=19% Similarity=0.240 Sum_probs=78.8
Q ss_pred cccccccceeeecccc--cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEE-Eec-CCchHHHHHHHHHHhhcc
Q psy2896 122 QELLETGIKVIDLICP--FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFT-GVG-ERTREGNDFYHEMIEAKV 197 (467)
Q Consensus 122 ~~~l~TGIr~ID~l~p--igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~-liG-eR~~ev~e~~~~~~~~~~ 197 (467)
-+.+.||...+|.++. +-+|..+-|||++|+|||+|+.+++.++.+... .++|. .-| -++..........
T Consensus 39 ~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~-~a~fIDtE~~l~p~r~~~l~~~~----- 112 (279)
T COG0468 39 IEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGG-KAAFIDTEHALDPERAKQLGVDL----- 112 (279)
T ss_pred cccccccchhHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCC-eEEEEeCCCCCCHHHHHHHHHhh-----
Confidence 6788999999999998 889999999999999999999999998766533 44442 222 2333333322221
Q ss_pred cCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCC--cEEEEEeChhHHHHHh
Q psy2896 198 VNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGK--DVLFFIDNIYRYTLAG 257 (467)
Q Consensus 198 ~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g~--~Vlvi~Ds~tr~a~A~ 257 (467)
+ ..++++-..+ ..-++.+++.+...+. --|+++||++-+.++.
T Consensus 113 ~--------d~l~v~~~~~---------~e~q~~i~~~~~~~~~~~i~LvVVDSvaa~~r~~ 157 (279)
T COG0468 113 L--------DNLLVSQPDT---------GEQQLEIAEKLARSGAEKIDLLVVDSVAALVRAE 157 (279)
T ss_pred h--------cceeEecCCC---------HHHHHHHHHHHHHhccCCCCEEEEecCcccchhh
Confidence 2 3455555555 4555566666665555 7899999999777754
No 83
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=98.05 E-value=3.8e-06 Score=83.22 Aligned_cols=121 Identities=21% Similarity=0.260 Sum_probs=73.4
Q ss_pred ccccccccceeeecccc--cccCceeeeecCCCCCchhhHHHHHHHHHhh----C-CCEEEEE-----EecCCchHHHHH
Q psy2896 121 SQELLETGIKVIDLICP--FSKGGKVGLFGGAGVGKTVNMMELINNIAKA----H-SGLSVFT-----GVGERTREGNDF 188 (467)
Q Consensus 121 ~~~~l~TGIr~ID~l~p--igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~----~-~dv~V~~-----liGeR~~ev~e~ 188 (467)
-...+.||++.+|.++- +..|+-+-|+|+||+|||.||.+++.++.-. + ..-+||. +.-+|-.++.+-
T Consensus 16 ~~~~i~Tg~~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~ 95 (256)
T PF08423_consen 16 RWSRISTGCKSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAER 95 (256)
T ss_dssp TS-EE--SSHHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHH
T ss_pred cCCeeCCCCHHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhc
Confidence 34679999999999985 8899999999999999999999999875421 1 2334442 444555555432
Q ss_pred HHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHH-HHHHHHHCCCcEEEEEeChhHHHHHh
Q psy2896 189 YHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLT-IAEGFRDEGKDVLFFIDNIYRYTLAG 257 (467)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~-~AE~fr~~g~~Vlvi~Ds~tr~a~A~ 257 (467)
.. +..+.+++ + +.++...+- .+. ...+. ....+.+ .+--|||+||++.+.+..
T Consensus 96 ~~-~~~~~~l~-------~-I~v~~~~~~---~~l---~~~L~~l~~~l~~-~~ikLIVIDSIaalfr~e 149 (256)
T PF08423_consen 96 FG-LDPEEILD-------N-IFVIRVFDL---EEL---LELLEQLPKLLSE-SKIKLIVIDSIAALFRSE 149 (256)
T ss_dssp TT-S-HHHHHH-------T-EEEEE-SSH---HHH---HHHHHHHHHHHHH-SCEEEEEEETSSHHHHHH
T ss_pred cc-cccchhhh-------c-eeeeecCCH---HHH---HHHHHHHHhhccc-cceEEEEecchHHHHHHH
Confidence 11 11223443 4 444444441 111 12222 2344444 467799999999998864
No 84
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=98.03 E-value=3.1e-05 Score=79.90 Aligned_cols=122 Identities=14% Similarity=0.091 Sum_probs=74.6
Q ss_pred ccccccccceeeecccc--cccCceeeeecCCCCCchhhHHHHHHHHHhh---C--CCEEEEEEecC--CchHHHHHHHH
Q psy2896 121 SQELLETGIKVIDLICP--FSKGGKVGLFGGAGVGKTVNMMELINNIAKA---H--SGLSVFTGVGE--RTREGNDFYHE 191 (467)
Q Consensus 121 ~~~~l~TGIr~ID~l~p--igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~---~--~dv~V~~liGe--R~~ev~e~~~~ 191 (467)
....+.||++.+|.++. +.+|.-+.|+|++|+|||+||.+++.+.... + ..-++|.-.-+ +++.+.+..+.
T Consensus 104 ~~~~isTG~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~ 183 (344)
T PLN03187 104 SVVRITTGSQALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAER 183 (344)
T ss_pred cCceecCCcHhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 45679999999999988 8899999999999999999999999875431 1 13455543333 34455444443
Q ss_pred HHh--hcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHHHH
Q psy2896 192 MIE--AKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLA 256 (467)
Q Consensus 192 ~~~--~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a~A 256 (467)
+.- ..+++ + +.++...+ ...... ....+.+.+.+ +.--|||+||++-+.++
T Consensus 184 ~g~d~~~~l~-------~-I~~~~~~~--~e~~~~---~l~~l~~~i~~-~~~~LvVIDSital~r~ 236 (344)
T PLN03187 184 FGMDADAVLD-------N-IIYARAYT--YEHQYN---LLLGLAAKMAE-EPFRLLIVDSVIALFRV 236 (344)
T ss_pred cCCChhhhcC-------e-EEEecCCC--HHHHHH---HHHHHHHHHHh-cCCCEEEEeCcHHhhhc
Confidence 311 11222 4 34433332 122111 11223334444 44568899999987664
No 85
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.00 E-value=5.7e-05 Score=71.76 Aligned_cols=166 Identities=13% Similarity=0.065 Sum_probs=84.0
Q ss_pred cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecC-CchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCC
Q psy2896 138 FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGE-RTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMN 216 (467)
Q Consensus 138 igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGe-R~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d 216 (467)
+.+|+-+.|+|++|+|||+++.+++.+..+++ .-++|.-.-+ ....+.+..+...+ ..++ + ++++...+
T Consensus 9 i~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g-~~v~yi~~e~~~~~rl~~~~~~~~~-~~~~-------~-i~~~~~~~ 78 (209)
T TIGR02237 9 VERGTITQIYGPPGSGKTNICMILAVNAARQG-KKVVYIDTEGLSPERFKQIAEDRPE-RALS-------N-FIVFEVFD 78 (209)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhCC-CeEEEEECCCCCHHHHHHHHHhChH-HHhc-------C-EEEEECCC
Confidence 78999999999999999999999999876653 3444443322 33333333222111 1122 4 34444332
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCCCCCce
Q psy2896 217 EPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSI 296 (467)
Q Consensus 217 ~~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~~~GSi 296 (467)
+..... ....+.+.+.+ ++--++++||++.+.++..+- +...+ ...+..+...+.+.. +.-.+
T Consensus 79 --~~~~~~---~~~~l~~~~~~-~~~~lvVIDSis~l~~~~~~~-----~~~~~----~~~l~~~~~~L~~~~--~~~~v 141 (209)
T TIGR02237 79 --FDEQGV---AIQKTSKFIDR-DSASLVVVDSFTALYRLELSD-----DRISR----NRELARQLTLLLSLA--RKKNL 141 (209)
T ss_pred --HHHHHH---HHHHHHHHHhh-cCccEEEEeCcHHHhHHHhCC-----ccHHH----HHHHHHHHHHHHHHH--HHcCC
Confidence 222111 12223344433 344578889999887643210 00000 001111111122221 23456
Q ss_pred eEEEEEEecC--C-CCCCCc-ccccccccceEEEeehh
Q psy2896 297 TSIQAVYVPA--D-DLTDPS-PATTFAHLDSTVVLSRD 330 (467)
Q Consensus 297 T~~~tv~~~~--~-d~~dpi-~~~~~~i~dG~ivLsr~ 330 (467)
|++.|-.+.. + +...|. ......+.|+.|.|++.
T Consensus 142 ~vl~t~~~~~~~~~~~~~~~gg~~~~~~~d~vi~l~~~ 179 (209)
T TIGR02237 142 AVVITNQVYTDVNNGTLRPLGGHLLEHWSKVILRLEKF 179 (209)
T ss_pred EEEEEcccEEecCCCCCcCCCcchhheeeeEEEEEEec
Confidence 7777755432 1 222332 22456777888999875
No 86
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.92 E-value=5.4e-05 Score=76.78 Aligned_cols=124 Identities=17% Similarity=0.161 Sum_probs=74.7
Q ss_pred cccccccceeeecccc--cccCceeeeecCCCCCchhhHHHHHHHHHhh-----CCCEEEEEEecC--CchHHHHHHHHH
Q psy2896 122 QELLETGIKVIDLICP--FSKGGKVGLFGGAGVGKTVNMMELINNIAKA-----HSGLSVFTGVGE--RTREGNDFYHEM 192 (467)
Q Consensus 122 ~~~l~TGIr~ID~l~p--igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~-----~~dv~V~~liGe--R~~ev~e~~~~~ 192 (467)
...+.||++.+|.++. +.+|.-+.|+|+||+|||+++.+++.++... ..+.+||.-.-+ +.+.+.++.+.+
T Consensus 74 ~~~~~Tg~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~ 153 (310)
T TIGR02236 74 IGKITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEAR 153 (310)
T ss_pred CCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHc
Confidence 3457799999999987 8899999999999999999999999886431 123566655444 334444444332
Q ss_pred HhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCC-cEEEEEeChhHHHHH
Q psy2896 193 IEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGK-DVLFFIDNIYRYTLA 256 (467)
Q Consensus 193 ~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g~-~Vlvi~Ds~tr~a~A 256 (467)
+. +. .+.+++ +.++...+..+ +. ...-.+.+.+.+.+. .-++|+||++-+.+.
T Consensus 154 ---gl-~~-~~~~~~-i~i~~~~~~~~--~~---~lld~l~~~i~~~~~~~~lVVIDSisa~~r~ 207 (310)
T TIGR02236 154 ---GL-DP-DEVLKN-IYVARAYNSNH--QM---LLVEKAEDLIKELNNPVKLLIVDSLTSHFRA 207 (310)
T ss_pred ---CC-CH-HHHhhc-eEEEecCCHHH--HH---HHHHHHHHHHHhcCCCceEEEEecchHhhhH
Confidence 11 10 001114 33333333222 11 122235566655442 448999999987654
No 87
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.92 E-value=6.1e-05 Score=76.84 Aligned_cols=123 Identities=15% Similarity=0.087 Sum_probs=73.7
Q ss_pred cccccccccceeeecccc--cccCceeeeecCCCCCchhhHHHHHHHHHhh-----CCCEEEEEEecC--CchHHHHHHH
Q psy2896 120 SSQELLETGIKVIDLICP--FSKGGKVGLFGGAGVGKTVNMMELINNIAKA-----HSGLSVFTGVGE--RTREGNDFYH 190 (467)
Q Consensus 120 ~~~~~l~TGIr~ID~l~p--igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~-----~~dv~V~~liGe--R~~ev~e~~~ 190 (467)
.....+.||++.+|.++. +.+|.-+.|+|++|+|||+||.+++.+.... .+.-++|.-.-+ +++.+.++.+
T Consensus 73 ~~~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~ 152 (313)
T TIGR02238 73 KKVLKITTGSQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAE 152 (313)
T ss_pred ccCceeCCCCHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHH
Confidence 334679999999999987 8999999999999999999999999865421 123455543222 2344444443
Q ss_pred HHHh--hcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHHHH
Q psy2896 191 EMIE--AKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLA 256 (467)
Q Consensus 191 ~~~~--~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a~A 256 (467)
.+.- ..+++ + +.++...+ . ++.. .....+.+.+.+ ++--|+|+||++-+.++
T Consensus 153 ~~g~d~~~~l~-------~-i~~~~~~~--~-e~~~--~~l~~l~~~i~~-~~~~LvVIDSisal~r~ 206 (313)
T TIGR02238 153 RFGVDPDAVLD-------N-ILYARAYT--S-EHQM--ELLDYLAAKFSE-EPFRLLIVDSIMALFRV 206 (313)
T ss_pred HcCCChHHhcC-------c-EEEecCCC--H-HHHH--HHHHHHHHHhhc-cCCCEEEEEcchHhhhh
Confidence 3311 11222 4 34433322 1 1111 112233444444 45568999999987664
No 88
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.91 E-value=2e-05 Score=67.36 Aligned_cols=146 Identities=21% Similarity=0.113 Sum_probs=80.0
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCH
Q psy2896 140 KGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPS 219 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~ 219 (467)
+++.+.|+|++|+|||+++..++.+..+.+ ..++.+..+...+...+.... . ....+...
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~-----------------~~~~~~~~ 60 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLLL-I-----------------IVGGKKAS 60 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHHh-h-----------------hhhccCCC
Confidence 478999999999999999999998764421 123333343333332221110 0 00011112
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCCCCCceeEE
Q psy2896 220 GNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSI 299 (467)
Q Consensus 220 ~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~~~GSiT~~ 299 (467)
..+.......++.|++.. ..++++|++.++.............. ....... .....+..+
T Consensus 61 ~~~~~~~~~~~~~~~~~~----~~viiiDei~~~~~~~~~~~~~~~~~-------------~~~~~~~---~~~~~~~~i 120 (148)
T smart00382 61 GSGELRLRLALALARKLK----PDVLILDEITSLLDAEQEALLLLLEE-------------LRLLLLL---KSEKNLTVI 120 (148)
T ss_pred CCHHHHHHHHHHHHHhcC----CCEEEEECCcccCCHHHHHHHHhhhh-------------hHHHHHH---HhcCCCEEE
Confidence 223444555555555433 68999999998776655543332222 0011111 124456666
Q ss_pred EEEEecCCCCCCCcccccccccceEEEeeh
Q psy2896 300 QAVYVPADDLTDPSPATTFAHLDSTVVLSR 329 (467)
Q Consensus 300 ~tv~~~~~d~~dpi~~~~~~i~dG~ivLsr 329 (467)
.+... ...+.+..++..++.++.+.+
T Consensus 121 ~~~~~----~~~~~~~~~~~~~~~~~~~~~ 146 (148)
T smart00382 121 LTTND----EKDLGPALLRRRFDRRIVLLL 146 (148)
T ss_pred EEeCC----CccCchhhhhhccceEEEecC
Confidence 66653 445666677777887776543
No 89
>PTZ00035 Rad51 protein; Provisional
Probab=97.89 E-value=5.4e-05 Score=78.02 Aligned_cols=49 Identities=22% Similarity=0.211 Sum_probs=42.6
Q ss_pred cccccccccccceeeecccc--cccCceeeeecCCCCCchhhHHHHHHHHH
Q psy2896 118 LSSSQELLETGIKVIDLICP--FSKGGKVGLFGGAGVGKTVNMMELINNIA 166 (467)
Q Consensus 118 R~~~~~~l~TGIr~ID~l~p--igrGqr~~I~g~~g~GKt~L~~~i~~~~~ 166 (467)
+......+.||++.+|.++. +.+|.-+.|+|++|+|||+|+.+++.+..
T Consensus 93 ~~~~~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~q 143 (337)
T PTZ00035 93 ARKNIIRITTGSTQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQ 143 (337)
T ss_pred hhccCccccCCcHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhc
Confidence 33445679999999999986 88999999999999999999999988754
No 90
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.88 E-value=0.00016 Score=78.42 Aligned_cols=70 Identities=29% Similarity=0.289 Sum_probs=57.8
Q ss_pred ccccccceeeecccc--cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHH
Q psy2896 123 ELLETGIKVIDLICP--FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEM 192 (467)
Q Consensus 123 ~~l~TGIr~ID~l~p--igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~ 192 (467)
+.+.|||..+|.++. +-+|+-++|.|+||+|||+++.+++.+.+++++.-++|...-|..+++.+-...+
T Consensus 11 ~ri~TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~ 82 (509)
T PRK09302 11 EKLPTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASF 82 (509)
T ss_pred ccccCCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHc
Confidence 467899999999984 9999999999999999999999999887765456678888877777766554443
No 91
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.88 E-value=0.00032 Score=69.34 Aligned_cols=67 Identities=21% Similarity=0.175 Sum_probs=49.7
Q ss_pred cccccccceeeecccc-cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHH
Q psy2896 122 QELLETGIKVIDLICP-FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDF 188 (467)
Q Consensus 122 ~~~l~TGIr~ID~l~p-igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~ 188 (467)
++.+.||+..+|.++- +.+|.-+.|.|++|+|||+++.+++.+.+++++.-++|.-.-+...++...
T Consensus 10 ~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r 77 (271)
T cd01122 10 NEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARR 77 (271)
T ss_pred ccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHH
Confidence 3467799999999865 889999999999999999999999998766533333333333444455433
No 92
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.86 E-value=0.00017 Score=77.14 Aligned_cols=53 Identities=17% Similarity=0.356 Sum_probs=44.9
Q ss_pred ccccccceeeecccc--cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEE
Q psy2896 123 ELLETGIKVIDLICP--FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFT 176 (467)
Q Consensus 123 ~~l~TGIr~ID~l~p--igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~ 176 (467)
+.+.|||.-+|-++. +.+|+-++|.|+||+|||+|+.+++.+.++++.. ++|.
T Consensus 74 ~ri~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~k-vlYv 128 (454)
T TIGR00416 74 PRFSSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMK-VLYV 128 (454)
T ss_pred CccccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCc-EEEE
Confidence 468999999999985 9999999999999999999999999987765333 4444
No 93
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.84 E-value=0.00073 Score=65.88 Aligned_cols=64 Identities=13% Similarity=0.045 Sum_probs=45.8
Q ss_pred ccccceeeecccc--cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHH
Q psy2896 125 LETGIKVIDLICP--FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFY 189 (467)
Q Consensus 125 l~TGIr~ID~l~p--igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~ 189 (467)
+.+++.-+|-++. +-+|..++|.|++|+|||+++.+++.+..+++ .-++|....|...+..+..
T Consensus 6 ~~~~~~~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g-~~~~yi~~e~~~~~~~~~~ 71 (230)
T PRK08533 6 IELSRDELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNG-YSVSYVSTQLTTTEFIKQM 71 (230)
T ss_pred EEEEEeeeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCC-CcEEEEeCCCCHHHHHHHH
Confidence 4466667777665 78899999999999999999988888765543 3445555666555544433
No 94
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.83 E-value=9.5e-05 Score=79.80 Aligned_cols=68 Identities=21% Similarity=0.178 Sum_probs=55.6
Q ss_pred cccccceeeecccc--cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHH
Q psy2896 124 LLETGIKVIDLICP--FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHE 191 (467)
Q Consensus 124 ~l~TGIr~ID~l~p--igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~ 191 (467)
.+.|||.-+|.++. +-+|..++|.|+||+|||+++.+++.+-++++..-++|+..-|+.+++.+....
T Consensus 2 r~~TGI~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~ 71 (484)
T TIGR02655 2 KIRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARS 71 (484)
T ss_pred cCCCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHH
Confidence 47899999999986 889999999999999999999999887555545667777667887776654443
No 95
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.82 E-value=0.00029 Score=75.36 Aligned_cols=46 Identities=26% Similarity=0.425 Sum_probs=41.8
Q ss_pred ccccccceeeecccc--cccCceeeeecCCCCCchhhHHHHHHHHHhh
Q psy2896 123 ELLETGIKVIDLICP--FSKGGKVGLFGGAGVGKTVNMMELINNIAKA 168 (467)
Q Consensus 123 ~~l~TGIr~ID~l~p--igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~ 168 (467)
+.+.|||.-+|-++. +.+|+-+.|.|++|+|||+|+.+++.+.++.
T Consensus 60 ~ri~TGi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~ 107 (446)
T PRK11823 60 PRISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAA 107 (446)
T ss_pred CcccCCcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 458899999999986 8899999999999999999999999987654
No 96
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.81 E-value=0.00032 Score=73.25 Aligned_cols=47 Identities=26% Similarity=0.470 Sum_probs=42.6
Q ss_pred cccccccceeeecccc--cccCceeeeecCCCCCchhhHHHHHHHHHhh
Q psy2896 122 QELLETGIKVIDLICP--FSKGGKVGLFGGAGVGKTVNMMELINNIAKA 168 (467)
Q Consensus 122 ~~~l~TGIr~ID~l~p--igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~ 168 (467)
.+.+.|||.-+|-++. +.+|.-++|.|++|+|||+|+.+++.+.++.
T Consensus 61 ~~ri~TGi~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~ 109 (372)
T cd01121 61 EERIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKR 109 (372)
T ss_pred cCccccCCHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 3468899999999986 9999999999999999999999999987764
No 97
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.80 E-value=6.5e-05 Score=84.56 Aligned_cols=110 Identities=20% Similarity=0.306 Sum_probs=73.8
Q ss_pred ccccccceeeecccc---cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccC
Q psy2896 123 ELLETGIKVIDLICP---FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVN 199 (467)
Q Consensus 123 ~~l~TGIr~ID~l~p---igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~ 199 (467)
..+.||+..+|.++. +-+|.-+.|+|++|+|||+|+.+++.+..+.+ ..++|.---+..+. + .+..-|+ +
T Consensus 39 ~~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G-~~v~yId~E~t~~~--~---~A~~lGv-D 111 (790)
T PRK09519 39 SVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAG-GVAAFIDAEHALDP--D---YAKKLGV-D 111 (790)
T ss_pred ceecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcC-CcEEEECCccchhH--H---HHHHcCC-C
Confidence 478899999999987 78999999999999999999999888766543 44555433232331 2 2223243 1
Q ss_pred CCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHH
Q psy2896 200 LDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYT 254 (467)
Q Consensus 200 ~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a 254 (467)
. ..++++.... .++ ++.+++.+..++.--|||+||++-+.
T Consensus 112 l------~~llv~~~~~---~E~------~l~~i~~lv~~~~~~LVVIDSI~aL~ 151 (790)
T PRK09519 112 T------DSLLVSQPDT---GEQ------ALEIADMLIRSGALDIVVIDSVAALV 151 (790)
T ss_pred h------hHeEEecCCC---HHH------HHHHHHHHhhcCCCeEEEEcchhhhc
Confidence 0 2233333222 222 45566677667888899999999776
No 98
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=97.79 E-value=0.00017 Score=74.40 Aligned_cols=121 Identities=17% Similarity=0.158 Sum_probs=72.8
Q ss_pred cccccccceeeecccc--cccCceeeeecCCCCCchhhHHHHHHHHHhh-----CCCEEEEEEecC--CchHHHHHHHHH
Q psy2896 122 QELLETGIKVIDLICP--FSKGGKVGLFGGAGVGKTVNMMELINNIAKA-----HSGLSVFTGVGE--RTREGNDFYHEM 192 (467)
Q Consensus 122 ~~~l~TGIr~ID~l~p--igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~-----~~dv~V~~liGe--R~~ev~e~~~~~ 192 (467)
...+.||++.+|.++. +.+|.-+.|+|+||+|||+|+.+++.+.... ....++|.-.-+ +++.+.++.+.+
T Consensus 102 ~~~i~tG~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~ 181 (342)
T PLN03186 102 IIQITTGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERF 181 (342)
T ss_pred cceeCCCCHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHc
Confidence 4569999999999877 8899999999999999999999999875421 112455542222 333344444333
Q ss_pred H--hhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHHHH
Q psy2896 193 I--EAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLA 256 (467)
Q Consensus 193 ~--~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a~A 256 (467)
. ...+++ + +.++...+ ...+... -..+++.+ .+++--|+|+||++-+.+.
T Consensus 182 ~~~~~~~l~-------~-i~~~~~~~--~e~~~~l---l~~~~~~~-~~~~~~LIVIDSI~alfr~ 233 (342)
T PLN03186 182 GLNGADVLE-------N-VAYARAYN--TDHQSEL---LLEAASMM-AETRFALMIVDSATALYRT 233 (342)
T ss_pred CCChhhhcc-------c-eEEEecCC--HHHHHHH---HHHHHHHh-hccCCCEEEEeCcHHHHHH
Confidence 1 111222 4 33444333 2222211 11222333 3456678999999988764
No 99
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.77 E-value=0.00016 Score=73.67 Aligned_cols=122 Identities=19% Similarity=0.190 Sum_probs=72.4
Q ss_pred ccccccceeeecccc--cccCceeeeecCCCCCchhhHHHHHHHHHhhC-----CCEEEEEEecC--CchHHHHHHHHHH
Q psy2896 123 ELLETGIKVIDLICP--FSKGGKVGLFGGAGVGKTVNMMELINNIAKAH-----SGLSVFTGVGE--RTREGNDFYHEMI 193 (467)
Q Consensus 123 ~~l~TGIr~ID~l~p--igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~-----~dv~V~~liGe--R~~ev~e~~~~~~ 193 (467)
..+.||+..+|.++. +-+|.-+.|+|++|+|||+++.+++.+.+... ...++|.-.-+ +.+.+.+..+.+
T Consensus 82 ~~~~Tg~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~- 160 (317)
T PRK04301 82 GKITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEAL- 160 (317)
T ss_pred CccCCCCHHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHc-
Confidence 457899999999876 88999999999999999999999998765321 13456654444 234444443332
Q ss_pred hhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEeChhHHHHH
Q psy2896 194 EAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDE-GKDVLFFIDNIYRYTLA 256 (467)
Q Consensus 194 ~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~-g~~Vlvi~Ds~tr~a~A 256 (467)
+. +. .+.+++ +.++...+ ...+. ..+...+.+..+ ..--+||+||++-+.++
T Consensus 161 --g~-~~-~~~l~~-i~~~~~~~--~~~~~----~~~~~l~~~i~~~~~~~lvVIDSisa~~~~ 213 (317)
T PRK04301 161 --GL-DP-DEVLDN-IHVARAYN--SDHQM----LLAEKAEELIKEGENIKLVIVDSLTAHFRA 213 (317)
T ss_pred --CC-Ch-Hhhhcc-EEEEeCCC--HHHHH----HHHHHHHHHHhccCceeEEEEECchHHhhh
Confidence 11 00 011124 33333322 11221 112233333333 34459999999987654
No 100
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.74 E-value=0.00087 Score=64.53 Aligned_cols=175 Identities=14% Similarity=0.102 Sum_probs=92.7
Q ss_pred cceeeecccc--cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcc-cCCCCCC
Q psy2896 128 GIKVIDLICP--FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKV-VNLDKPE 204 (467)
Q Consensus 128 GIr~ID~l~p--igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~-~~~~~~~ 204 (467)
||+.+|-++. +-+|.-+.|.|++|+|||+++.+++.+..++ +.-++|.-.-+..+++.+-...+ |. ++++
T Consensus 1 Gi~~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~-g~~~~y~s~e~~~~~l~~~~~~~---~~~~~~~--- 73 (224)
T TIGR03880 1 GIPGLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKN-GEKAMYISLEEREERILGYAKSK---GWDLEDY--- 73 (224)
T ss_pred CchhhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCCCHHHHHHHHHHc---CCChHHH---
Confidence 6778888764 6689999999999999999999999886654 45666766666665554443332 21 1100
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHH
Q psy2896 205 KSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDE-GKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGY 283 (467)
Q Consensus 205 ~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~-g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~ 283 (467)
..+.+.+... ++.........-......+.++ +.+ ++++||++-+-. ..+. ++..-..+.+
T Consensus 74 ~~~~l~~~~~---~~~~~~~~~~~l~~~~~~~i~~~~~~-~vVIDsls~l~~-------~~~~-------~~~~r~~l~~ 135 (224)
T TIGR03880 74 IDKSLYIVRL---DPSDFKTSLNRIKNELPILIKELGAS-RVVIDPISLLET-------LFDD-------DAERRTELFR 135 (224)
T ss_pred HhCCeEEEec---CHHHHHhhHHHHHHHHHHHHHHhCCC-EEEEcChHHHhh-------hcCC-------HHHHHHHHHH
Confidence 0122333332 1211111111111122233333 555 566999996511 0111 1111223445
Q ss_pred HHHHhcCCCCCceeEEEEEEecCCCCCCCcccccccccceEEEeehh
Q psy2896 284 LQERIASTKKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRD 330 (467)
Q Consensus 284 l~ERag~~~~GSiT~~~tv~~~~~d~~dpi~~~~~~i~dG~ivLsr~ 330 (467)
++.... +. -+|++.+......+....-...+..+.||-|+|+..
T Consensus 136 l~~~lk--~~-~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~~~ 179 (224)
T TIGR03880 136 FYSSLR--ET-GVTTILTSEADKTNVFASKYGLIEYLADGVIILKYV 179 (224)
T ss_pred HHHHHH--hC-CCEEEEEEcccCCCCCccCCCceEEEEeEEEEEeee
Confidence 554442 12 347776665433211000023478899999999643
No 101
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.74 E-value=0.00061 Score=63.06 Aligned_cols=161 Identities=15% Similarity=0.061 Sum_probs=80.0
Q ss_pred eeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhccc-CCCCCCCceEEEEEeC--CCCCHH
Q psy2896 144 VGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVV-NLDKPEKSKVSMVYGQ--MNEPSG 220 (467)
Q Consensus 144 ~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~-~~~~~~~~~~vvv~~t--~d~~~~ 220 (467)
+.|.|+||+|||+|+.+++.+.++++.. ++|...-|..+++.+....+ |.- +.+.+ . ....+... ...+..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~-v~~~s~e~~~~~~~~~~~~~---g~~~~~l~~-~-g~l~~~d~~~~~~s~~ 75 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEP-GLYVTLEESPEELIENAESL---GWDLERLED-E-GLLAIVDADPDEIGPA 75 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCc-EEEEECCCCHHHHHHHHHHc---CCChHHHHh-c-CCeEEEecCccccchh
Confidence 5789999999999999999987765433 44555556666655433332 210 00000 0 11112211 111222
Q ss_pred HHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCCCCCceeEEE
Q psy2896 221 NRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQ 300 (467)
Q Consensus 221 ~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~~~GSiT~~~ 300 (467)
.... ...-+........+.+.-++++|+++.+... .+ ...-..+.+++..... .| +|.+.
T Consensus 76 ~~~~-~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~--------~~--------~~~~~~i~~l~~~l~~--~g-~tvi~ 135 (187)
T cd01124 76 ESSL-RLELIQRLKDAIEEFKAKRVVIDSVSGLLLM--------EQ--------STARLEIRRLLFALKR--FG-VTTLL 135 (187)
T ss_pred hhhh-hHHHHHHHHHHHHHhCCCEEEEeCcHHHhhc--------Ch--------HHHHHHHHHHHHHHHH--CC-CEEEE
Confidence 2110 0011122222222335568889999976542 00 1112233444444322 23 46666
Q ss_pred EEEecCCCCCCCcccccccccceEEEeehh
Q psy2896 301 AVYVPADDLTDPSPATTFAHLDSTVVLSRD 330 (467)
Q Consensus 301 tv~~~~~d~~dpi~~~~~~i~dG~ivLsr~ 330 (467)
+.......-....+..+..+.||.|.|++.
T Consensus 136 v~~~~~~~~~~~~~~~~~~~aD~ii~l~~~ 165 (187)
T cd01124 136 TSEQSGLEGTGFGGGDVEYLVDGVIRLRLD 165 (187)
T ss_pred EeccccCCCcccCcCceeEeeeEEEEEEEE
Confidence 654333211122334678999999999977
No 102
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.66 E-value=0.00031 Score=71.76 Aligned_cols=45 Identities=27% Similarity=0.262 Sum_probs=40.2
Q ss_pred cccccccceeeecccc--cccCceeeeecCCCCCchhhHHHHHHHHH
Q psy2896 122 QELLETGIKVIDLICP--FSKGGKVGLFGGAGVGKTVNMMELINNIA 166 (467)
Q Consensus 122 ~~~l~TGIr~ID~l~p--igrGqr~~I~g~~g~GKt~L~~~i~~~~~ 166 (467)
...+.||++.+|.++. +-+|.-+.|+|++|+|||+|+.+++.++.
T Consensus 75 ~~~~~tg~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~ 121 (316)
T TIGR02239 75 VIQLTTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQ 121 (316)
T ss_pred cceeCCCCHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHh
Confidence 4568999999999877 78899999999999999999999998653
No 103
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=97.51 E-value=0.00022 Score=72.81 Aligned_cols=109 Identities=22% Similarity=0.358 Sum_probs=69.1
Q ss_pred cccccccceeeecccc---cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcc-
Q psy2896 122 QELLETGIKVIDLICP---FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKV- 197 (467)
Q Consensus 122 ~~~l~TGIr~ID~l~p---igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~- 197 (467)
.+.+.||+..+|..++ +.+|.-+-|+|++++|||+|+..++.+..+. +..|+|.=. |..-. .++.+.+ |+
T Consensus 31 ~~~i~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~-g~~~a~ID~-e~~ld-~~~a~~l---Gvd 104 (322)
T PF00154_consen 31 IEVISTGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQ-GGICAFIDA-EHALD-PEYAESL---GVD 104 (322)
T ss_dssp S-EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-T-EEEEEES-SS----HHHHHHT---T--
T ss_pred cceEecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcc-cceeEEecC-cccch-hhHHHhc---Ccc
Confidence 3578999999999988 6688899999999999999999999876554 345555422 22211 1333333 43
Q ss_pred cCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHH
Q psy2896 198 VNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRY 253 (467)
Q Consensus 198 ~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~ 253 (467)
++ + ++|+-+.. ...|+.++|.+...|.-.++++||+...
T Consensus 105 l~-------r-llv~~P~~---------~E~al~~~e~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 105 LD-------R-LLVVQPDT---------GEQALWIAEQLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp GG-------G-EEEEE-SS---------HHHHHHHHHHHHHTTSESEEEEE-CTT-
T ss_pred cc-------c-eEEecCCc---------HHHHHHHHHHHhhcccccEEEEecCccc
Confidence 33 5 34444322 3457888999988888778999998754
No 104
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=97.05 E-value=0.0019 Score=60.15 Aligned_cols=68 Identities=21% Similarity=0.243 Sum_probs=40.9
Q ss_pred ccccceeeecccc--cccCceeeeecCCCCCchhhHHHHHHHHHhhC--------CCEEEEEEecCCch-HHHHHHHHH
Q psy2896 125 LETGIKVIDLICP--FSKGGKVGLFGGAGVGKTVNMMELINNIAKAH--------SGLSVFTGVGERTR-EGNDFYHEM 192 (467)
Q Consensus 125 l~TGIr~ID~l~p--igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~--------~dv~V~~liGeR~~-ev~e~~~~~ 192 (467)
+.++++..|.+++ +.+|+-..|.|++|+|||+++.+++...+... ....|+-+-.|-.. ++.+.+..+
T Consensus 14 ~~~~~~~~~~li~g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~ 92 (193)
T PF13481_consen 14 LDTGFPPLDWLIDGLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRAL 92 (193)
T ss_dssp HHS------EEETTEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHH
T ss_pred ccCCCCCcceeECCcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHH
Confidence 5566666777766 66899999999999999999999999877521 23445555555554 555555443
No 105
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.86 E-value=0.0035 Score=65.26 Aligned_cols=96 Identities=20% Similarity=0.222 Sum_probs=64.2
Q ss_pred cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCC
Q psy2896 138 FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNE 217 (467)
Q Consensus 138 igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~ 217 (467)
-++=..+-++||||+|||||+.-|+..... .+.-+-.+--.-.|+
T Consensus 45 ~~~l~SmIl~GPPG~GKTTlA~liA~~~~~---~f~~~sAv~~gvkdl-------------------------------- 89 (436)
T COG2256 45 AGHLHSMILWGPPGTGKTTLARLIAGTTNA---AFEALSAVTSGVKDL-------------------------------- 89 (436)
T ss_pred cCCCceeEEECCCCCCHHHHHHHHHHhhCC---ceEEeccccccHHHH--------------------------------
Confidence 334456789999999999999988775321 222222221111222
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCCCCCcee
Q psy2896 218 PSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSIT 297 (467)
Q Consensus 218 ~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~~~GSiT 297 (467)
.-++..|+.++..|+..++++|-+-||-.++.+.-|. - + +.|.||
T Consensus 90 ---------r~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp-------------------~-v------E~G~ii 134 (436)
T COG2256 90 ---------REIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLP-------------------H-V------ENGTII 134 (436)
T ss_pred ---------HHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhh-------------------h-h------cCCeEE
Confidence 2334455567777999999999999999999985442 2 2 479999
Q ss_pred EEEEEE
Q psy2896 298 SIQAVY 303 (467)
Q Consensus 298 ~~~tv~ 303 (467)
.|++.+
T Consensus 135 lIGATT 140 (436)
T COG2256 135 LIGATT 140 (436)
T ss_pred EEeccC
Confidence 998764
No 106
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.83 E-value=0.016 Score=49.70 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=23.8
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHHH
Q psy2896 140 KGGKVGLFGGAGVGKTVNMMELINNIA 166 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~~ 166 (467)
.+..+.|.|++|+|||+++..+++...
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 467899999999999999999998764
No 107
>PRK05973 replicative DNA helicase; Provisional
Probab=96.77 E-value=0.0056 Score=60.11 Aligned_cols=100 Identities=16% Similarity=0.117 Sum_probs=58.3
Q ss_pred ccccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCC
Q psy2896 137 PFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMN 216 (467)
Q Consensus 137 pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d 216 (467)
.+-+|+-+.|.|.||+|||+++.+++.+.++++ .-++|.-.-|..+++ .+.+...|.-.. +.. . .+.+...|
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~G-e~vlyfSlEes~~~i---~~R~~s~g~d~~--~~~-~-~~~~d~~d 131 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSG-RTGVFFTLEYTEQDV---RDRLRALGADRA--QFA-D-LFEFDTSD 131 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcC-CeEEEEEEeCCHHHH---HHHHHHcCCChH--Hhc-c-ceEeecCC
Confidence 378999999999999999999999999877653 344454444444444 444444343110 100 1 23333343
Q ss_pred C-CHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHH
Q psy2896 217 E-PSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYT 254 (467)
Q Consensus 217 ~-~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a 254 (467)
. .+. .+.+++..+-+.-++++|+++-+.
T Consensus 132 ~~~~~----------~ii~~l~~~~~~~lVVIDsLq~l~ 160 (237)
T PRK05973 132 AICAD----------YIIARLASAPRGTLVVIDYLQLLD 160 (237)
T ss_pred CCCHH----------HHHHHHHHhhCCCEEEEEcHHHHh
Confidence 2 111 123344433223588899998653
No 108
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.0027 Score=66.35 Aligned_cols=56 Identities=23% Similarity=0.444 Sum_probs=46.2
Q ss_pred cccccccceeeecccc--cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecC
Q psy2896 122 QELLETGIKVIDLICP--FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGE 180 (467)
Q Consensus 122 ~~~l~TGIr~ID~l~p--igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGe 180 (467)
...+.||+.=+|-.+- +.+|+-++|=|+||.|||||+.|++.+.+++. -++|+ .||
T Consensus 72 ~~Ri~tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~--~vLYV-sGE 129 (456)
T COG1066 72 EPRISTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG--KVLYV-SGE 129 (456)
T ss_pred cccccCChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC--cEEEE-eCC
Confidence 3468899988998887 89999999999999999999999999987653 44454 343
No 109
>PF05729 NACHT: NACHT domain
Probab=96.58 E-value=0.0053 Score=54.97 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=23.6
Q ss_pred eeeeecCCCCCchhhHHHHHHHHHhhC
Q psy2896 143 KVGLFGGAGVGKTVNMMELINNIAKAH 169 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~~~~~~ 169 (467)
.+.|.|++|+|||+++..++..+.+.+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 367999999999999999999887754
No 110
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.49 E-value=0.01 Score=55.22 Aligned_cols=89 Identities=12% Similarity=0.070 Sum_probs=53.0
Q ss_pred eeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHH
Q psy2896 144 VGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRL 223 (467)
Q Consensus 144 ~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~ 223 (467)
+.|.|++|+|||+++.+++.. .+..+.+++-.--...|..+.++..++..- .. +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~~~~d~em~~rI~~H~~~R~---------~~--------------w 55 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIATAEAFDDEMAERIARHRKRRP---------AH--------------W 55 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEEccCcCCHHHHHHHHHHHHhCC---------CC--------------c
Confidence 579999999999999998764 223445554333335566666666543221 11 1
Q ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeChhHHHHHhH
Q psy2896 224 RVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGT 258 (467)
Q Consensus 224 ~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a~A~r 258 (467)
........+.+.+.+...+-++++|++|-|.....
T Consensus 56 ~t~E~~~~l~~~l~~~~~~~~VLIDclt~~~~n~l 90 (169)
T cd00544 56 RTIETPRDLVSALKELDPGDVVLIDCLTLWVTNLL 90 (169)
T ss_pred eEeecHHHHHHHHHhcCCCCEEEEEcHhHHHHHhC
Confidence 11122234555554432333688999999887654
No 111
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.41 E-value=0.0049 Score=59.97 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.3
Q ss_pred eeeeecCCCCCchhhHHHHHHHH
Q psy2896 143 KVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
-+.++||||+|||||+.-|++..
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~ 74 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANEL 74 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHC
T ss_pred eEEEECCCccchhHHHHHHHhcc
Confidence 47899999999999999888764
No 112
>KOG2028|consensus
Probab=96.39 E-value=0.0086 Score=61.80 Aligned_cols=78 Identities=21% Similarity=0.327 Sum_probs=51.0
Q ss_pred eeeeecCCCCCchhhHHHHHHHHHhhCCCEEEE--EEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHH
Q psy2896 143 KVGLFGGAGVGKTVNMMELINNIAKAHSGLSVF--TGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSG 220 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~--~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~ 220 (467)
-+.+.|+||+|||+|+.-|+.+.++ ++ +-.+ ...--...+++++++.-++
T Consensus 164 SmIlWGppG~GKTtlArlia~tsk~-~S-yrfvelSAt~a~t~dvR~ife~aq~-------------------------- 215 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIASTSKK-HS-YRFVELSATNAKTNDVRDIFEQAQN-------------------------- 215 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhhcCC-Cc-eEEEEEeccccchHHHHHHHHHHHH--------------------------
Confidence 4668899999999999988876533 22 2111 2333344555555554422
Q ss_pred HHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHHHHhHHHHH
Q psy2896 221 NRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSA 262 (467)
Q Consensus 221 ~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a~A~reis~ 262 (467)
+...-++..++++|.+.||-+++..+-+
T Consensus 216 --------------~~~l~krkTilFiDEiHRFNksQQD~fL 243 (554)
T KOG2028|consen 216 --------------EKSLTKRKTILFIDEIHRFNKSQQDTFL 243 (554)
T ss_pred --------------HHhhhcceeEEEeHHhhhhhhhhhhccc
Confidence 1122367788889999999999987654
No 113
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=96.38 E-value=0.0088 Score=63.98 Aligned_cols=195 Identities=6% Similarity=-0.103 Sum_probs=153.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCCCC-
Q psy2896 215 MNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKK- 293 (467)
Q Consensus 215 ~d~~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~~~- 293 (467)
...+..+.+.+-++.+.+++++++.++|+=..++.+.+++.+++|...-+...+....++-..-+-|++.+++.....|
T Consensus 291 iaNTSnMPVAAREasIYtGiTiaEY~RDmGy~v~lmADSTSRWAEAlREisgRleEmPgeegyPaYL~srlA~fYERaG~ 370 (588)
T COG1155 291 IANTSNMPVAAREASIYTGITIAEYYRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLGSRLAEFYERAGR 370 (588)
T ss_pred eecCccchHHHhhhhhhhhhhHHHHHHhhhhhhHHhhchHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHHHhcCe
Confidence 4556778899999999999999999999999999999999999998888888888999999999999999988875555
Q ss_pred ------CceeEEEEEEecCCCCCCCcccccccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCcccc--HHHH-----
Q psy2896 294 ------GSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVG--KKHY----- 360 (467)
Q Consensus 294 ------GSiT~~~tv~~~~~d~~dpi~~~~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~--~~~~----- 360 (467)
+++|..-||.-+..+...++.+.+.+.+=..+-+.-.|.++.++|-+.|..+.+-.- +.+.+ .+++
T Consensus 371 v~~~~~~~r~GsvtV~gaVSPpGGdfSEPVtq~Tlriv~vFw~Ld~~la~~rhfPaInwl~sy-S~Y~~~~~~~~~~~v~ 449 (588)
T COG1155 371 VRLVSPEERFGSITVIGAVSPPGGDFSEPVTQNTLRVVRVFWALDAALANRRHFPSINWLNSY-SLYTEDLRSWYDENVS 449 (588)
T ss_pred eeecCCCcceEEEEEecCCCCCCCCcCcccchheeeeeeeecccchhhhhcccCcccChHHHH-HHHHHHHHHHhhcccC
Confidence 456677788888899999999999999999999999999999999999999887765 34433 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcCCC
Q psy2896 361 KIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVARARKMQRFLSQPF 410 (467)
Q Consensus 361 ~~a~~~r~~la~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~i~~fl~Q~~ 410 (467)
..-.++|..+.+.-+.++-++..++..+.+......+....+.+.++|.|
T Consensus 450 ~~~~~~r~~a~~~Lq~e~elqeiv~lVG~eal~e~~~~il~va~~ire~f 499 (588)
T COG1155 450 PEWGALRDQAMEILQRESELQEIVQLVGYDALPEKEKSILDVARIIREDF 499 (588)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHH
Confidence 12344566666666666666666666666655555555555556666664
No 114
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.15 E-value=0.13 Score=49.85 Aligned_cols=164 Identities=19% Similarity=0.145 Sum_probs=92.2
Q ss_pred cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcc--cCCCCCCCceEEEEEeCC
Q psy2896 138 FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKV--VNLDKPEKSKVSMVYGQM 215 (467)
Q Consensus 138 igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~--~~~~~~~~~~~vvv~~t~ 215 (467)
+--|+=+.|.|+.|+|||.|+++++-....+ +..|....- ...+++|+..+...+. .+ ...+....++...
T Consensus 25 iP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~--g~~v~yvsT--e~T~refi~qm~sl~ydv~~---~~l~G~l~~~~~~ 97 (235)
T COG2874 25 IPVGSLILIEGDNGTGKSVLSQRFAYGFLMN--GYRVTYVST--ELTVREFIKQMESLSYDVSD---FLLSGRLLFFPVN 97 (235)
T ss_pred CccCeEEEEECCCCccHHHHHHHHHHHHHhC--CceEEEEEe--chhHHHHHHHHHhcCCCchH---HHhcceeEEEEec
Confidence 4568999999999999999999999987665 333333222 3467789888765431 11 1112344555543
Q ss_pred CCCHHHHHHHHHHHHH-HHHHHHHCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCCCCC
Q psy2896 216 NEPSGNRLRVALTGLT-IAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKG 294 (467)
Q Consensus 216 d~~~~~r~~~~~~a~~-~AE~fr~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~~~G 294 (467)
-+|...--+....-+. +.|+.+-.-++| +|+||++-++.=-.|..-+ ..++.+-+|. ..|
T Consensus 98 ~~~~~~~~~~~~~~L~~l~~~~k~~~~dV-iIIDSls~~~~~~~~~~vl------------~fm~~~r~l~------d~g 158 (235)
T COG2874 98 LEPVNWGRRSARKLLDLLLEFIKRWEKDV-IIIDSLSAFATYDSEDAVL------------NFMTFLRKLS------DLG 158 (235)
T ss_pred ccccccChHHHHHHHHHHHhhHHhhcCCE-EEEecccHHhhcccHHHHH------------HHHHHHHHHH------hCC
Confidence 3333221111111111 222323223455 5669999766533222221 2233333332 234
Q ss_pred ceeEEEEEEecCCCCCCCcccccccccceEEEeehh
Q psy2896 295 SITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRD 330 (467)
Q Consensus 295 SiT~~~tv~~~~~d~~dpi~~~~~~i~dG~ivLsr~ 330 (467)
- |++.||. ...+.+.+-.-++++-|+++-|+.+
T Consensus 159 K-vIilTvh--p~~l~e~~~~rirs~~d~~l~L~~~ 191 (235)
T COG2874 159 K-VIILTVH--PSALDEDVLTRIRSACDVYLRLRLE 191 (235)
T ss_pred C-EEEEEeC--hhhcCHHHHHHHHHhhheeEEEEhh
Confidence 3 5555654 4567777777889999999999865
No 115
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.95 E-value=0.004 Score=60.99 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=26.2
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.|.+|++.||+|+||+|||||+..++--
T Consensus 28 ~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 28 LEIERGETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred EEecCCCEEEEEcCCCCCHHHHHHHHhcc
Confidence 56999999999999999999999987753
No 116
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.93 E-value=0.021 Score=49.48 Aligned_cols=93 Identities=20% Similarity=0.260 Sum_probs=48.9
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHHHhh-----CCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeC
Q psy2896 140 KGGKVGLFGGAGVGKTVNMMELINNIAKA-----HSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQ 214 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~~~~-----~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t 214 (467)
++..+.|.|++|+|||+++..++++.... +.+ +++.-+.... ...+|...+.+.=.... ..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~i~~~l~~~~------~~------ 68 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPD-VIYVNCPSSR-TPRDFAQEILEALGLPL------KS------ 68 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEE-EEEEEHHHHS-SHHHHHHHHHHHHT-SS------SS------
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCc-EEEEEeCCCC-CHHHHHHHHHHHhCccc------cc------
Confidence 35567899999999999999999976542 222 3344343333 44555555433211110 00
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHH
Q psy2896 215 MNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYT 254 (467)
Q Consensus 215 ~d~~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a 254 (467)
+.......-.+.+++...+. +++++|++-++.
T Consensus 69 -------~~~~~~l~~~~~~~l~~~~~-~~lviDe~~~l~ 100 (131)
T PF13401_consen 69 -------RQTSDELRSLLIDALDRRRV-VLLVIDEADHLF 100 (131)
T ss_dssp -------TS-HHHHHHHHHHHHHHCTE-EEEEEETTHHHH
T ss_pred -------cCCHHHHHHHHHHHHHhcCC-eEEEEeChHhcC
Confidence 11112222344455555433 899999999764
No 117
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.91 E-value=0.009 Score=58.89 Aligned_cols=55 Identities=25% Similarity=0.280 Sum_probs=42.7
Q ss_pred ccccceeeeccc-ccccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecC
Q psy2896 125 LETGIKVIDLIC-PFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGE 180 (467)
Q Consensus 125 l~TGIr~ID~l~-pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGe 180 (467)
+.||++.+|-++ .+.+|+=+.|-|.||+|||+++.+++.+.+.++ +..|+-+.-|
T Consensus 2 i~TG~~~LD~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~-~~~vly~SlE 57 (259)
T PF03796_consen 2 IPTGFPALDRLLGGLRPGELTVIAARPGVGKTAFALQIALNAALNG-GYPVLYFSLE 57 (259)
T ss_dssp B-SSTHHHHHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTT-SSEEEEEESS
T ss_pred CCCChHHHHHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHHHhc-CCeEEEEcCC
Confidence 579999999987 588999999999999999999999999988754 2444444444
No 118
>PF13173 AAA_14: AAA domain
Probab=95.85 E-value=0.026 Score=49.57 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=21.8
Q ss_pred CceeeeecCCCCCchhhHHHHHHHH
Q psy2896 141 GGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
++-+.|.|+.|+|||||+.+++...
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~ 26 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL 26 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999998764
No 119
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=95.63 E-value=0.015 Score=61.71 Aligned_cols=46 Identities=20% Similarity=0.237 Sum_probs=41.5
Q ss_pred ccccccceeeecccc-cccCceeeeecCCCCCchhhHHHHHHHHHhh
Q psy2896 123 ELLETGIKVIDLICP-FSKGGKVGLFGGAGVGKTVNMMELINNIAKA 168 (467)
Q Consensus 123 ~~l~TGIr~ID~l~p-igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~ 168 (467)
..+.||+..+|.++. +.+|+-+.|-|.||+|||+++.+++.+.+..
T Consensus 176 ~gi~tG~~~LD~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~ 222 (434)
T TIGR00665 176 TGVPTGFTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIK 222 (434)
T ss_pred CcccCCchhhHhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHh
Confidence 458899999999975 8899999999999999999999999987754
No 120
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=95.62 E-value=0.036 Score=54.81 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=33.8
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHHHH-hhCCCEEEEEEecCCchH
Q psy2896 139 SKGGKVGLFGGAGVGKTVNMMELINNIA-KAHSGLSVFTGVGERTRE 184 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~~~-~~~~dv~V~~liGeR~~e 184 (467)
...+.++|.|.+|+|||+|+.+++++.. +++-+.++++-.+.....
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~ 63 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSL 63 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCC
T ss_pred CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccc
Confidence 4577899999999999999999997632 233467777766665544
No 121
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.59 E-value=0.025 Score=48.66 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=19.8
Q ss_pred eeeecCCCCCchhhHHHHHHHH
Q psy2896 144 VGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 144 ~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
++|.|++|+|||+++..+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5789999999999999999864
No 122
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.59 E-value=0.043 Score=54.01 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=22.3
Q ss_pred eeeeecCCCCCchhhHHHHHHHHHh
Q psy2896 143 KVGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
|+.|.|++|+|||+|+..+..+...
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~ 39 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRH 39 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcc
Confidence 7899999999999999999987544
No 123
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.56 E-value=0.11 Score=53.35 Aligned_cols=37 Identities=22% Similarity=0.197 Sum_probs=29.9
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEE
Q psy2896 139 SKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVF 175 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~ 175 (467)
.+|+.+++.|++|+||||++..++......+..|.++
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li 148 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLA 148 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEE
Confidence 5799999999999999999999998766543334443
No 124
>PF13479 AAA_24: AAA domain
Probab=95.54 E-value=0.039 Score=52.99 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=19.5
Q ss_pred cCceeeeecCCCCCchhhHHHH
Q psy2896 140 KGGKVGLFGGAGVGKTVNMMEL 161 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i 161 (467)
++.|+.|+|+||+|||+++..+
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC
Confidence 4679999999999999998865
No 125
>PRK14974 cell division protein FtsY; Provisional
Probab=95.53 E-value=0.11 Score=53.59 Aligned_cols=30 Identities=27% Similarity=0.335 Sum_probs=25.8
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHHHHhh
Q psy2896 139 SKGGKVGLFGGAGVGKTVNMMELINNIAKA 168 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~~~~~ 168 (467)
+++..+++.|++|+||||++..++......
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 557899999999999999999999876543
No 126
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.53 E-value=0.011 Score=62.49 Aligned_cols=45 Identities=24% Similarity=0.345 Sum_probs=40.9
Q ss_pred ccccccceeeecccc-cccCceeeeecCCCCCchhhHHHHHHHHHh
Q psy2896 123 ELLETGIKVIDLICP-FSKGGKVGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 123 ~~l~TGIr~ID~l~p-igrGqr~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
.-+.||+..+|-++. +.+|+=+.|-|.||+|||+++.+++.+.+.
T Consensus 175 ~gi~tG~~~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~ 220 (421)
T TIGR03600 175 TGLSTGLPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVAL 220 (421)
T ss_pred cceeCCChhHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 458999999999984 999999999999999999999999988763
No 127
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.50 E-value=0.18 Score=46.27 Aligned_cols=46 Identities=20% Similarity=0.180 Sum_probs=30.1
Q ss_pred eeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHH
Q psy2896 143 KVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFY 189 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~ 189 (467)
.+.+.|++|+|||+++..++...++.+..+. ++-++-+.....+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~-~i~~D~~~~~~~~~l 47 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVL-LVAADTYRPAAIEQL 47 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEE-EEEcCCCChHHHHHH
Confidence 3678999999999999999987665432333 333444443443333
No 128
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.48 E-value=0.02 Score=55.40 Aligned_cols=49 Identities=18% Similarity=0.227 Sum_probs=37.3
Q ss_pred cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHH
Q psy2896 138 FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGN 186 (467)
Q Consensus 138 igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~ 186 (467)
+.+|+-+.|.|+||+|||+++.+++.+.+.++..-++|.-.-+..+++.
T Consensus 10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~ 58 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLL 58 (242)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHH
Confidence 7899999999999999999999999988776333444544444455444
No 129
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.42 E-value=0.062 Score=57.01 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=23.7
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHHH
Q psy2896 139 SKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
.++..+.+.|++|+||||++..++...
T Consensus 221 ~~~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 221 NQRKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456779999999999999999999754
No 130
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.39 E-value=0.011 Score=55.35 Aligned_cols=35 Identities=23% Similarity=0.361 Sum_probs=30.2
Q ss_pred eeeecccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 130 KVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 130 r~ID~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
.+++..+.+.+|.+++|.|++|+|||||+..|+..
T Consensus 14 ~~l~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 14 FLLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred EEEccCcEECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 45555678999999999999999999999988764
No 131
>PHA02542 41 41 helicase; Provisional
Probab=95.36 E-value=0.015 Score=62.73 Aligned_cols=54 Identities=13% Similarity=0.212 Sum_probs=45.0
Q ss_pred cccccccceeeeccc--ccccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEE
Q psy2896 122 QELLETGIKVIDLIC--PFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVF 175 (467)
Q Consensus 122 ~~~l~TGIr~ID~l~--pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~ 175 (467)
..-+.||+.-+|.++ .+.+|+=+.|-|.||+|||+++..+|.+.++.+..|.+|
T Consensus 169 ~~gi~TG~~~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~f 224 (473)
T PHA02542 169 ANKIPFKLEILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYI 224 (473)
T ss_pred CCccCCCcHHHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEE
Confidence 346789999999998 499999999999999999999999999987543334444
No 132
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.34 E-value=0.01 Score=58.37 Aligned_cols=35 Identities=26% Similarity=0.463 Sum_probs=29.3
Q ss_pred ceeeecc-cccccCceeeeecCCCCCchhhHHHHHH
Q psy2896 129 IKVIDLI-CPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 129 Ir~ID~l-~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
.++++.+ +.+.+|+.+.|.|+||||||||+..|+-
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4565544 5699999999999999999999997765
No 133
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.27 E-value=0.054 Score=49.92 Aligned_cols=89 Identities=22% Similarity=0.191 Sum_probs=56.8
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCH
Q psy2896 140 KGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPS 219 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~ 219 (467)
||-.+-|.|-+|+|||||+..+.+..... ...++.+=| .+++. .+ . + .-.-+.
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~--g~~~~~LDg---D~lR~---~l------~-------~------dl~fs~ 53 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFAR--GIKVYLLDG---DNLRH---GL------N-------A------DLGFSK 53 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHT--TS-EEEEEH---HHHCT---TT------T-------T------T--SSH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEecC---cchhh---cc------C-------C------CCCCCH
Confidence 57788999999999999999999887654 445555443 22221 11 1 0 002234
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHHH
Q psy2896 220 GNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTL 255 (467)
Q Consensus 220 ~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a~ 255 (467)
..|.........+|..|.++|..|++-.-|.++-.+
T Consensus 54 ~dR~e~~rr~~~~A~ll~~~G~ivIva~isp~~~~R 89 (156)
T PF01583_consen 54 EDREENIRRIAEVAKLLADQGIIVIVAFISPYREDR 89 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSEEEEE----SHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEeeccCchHHH
Confidence 567777777888999999999988888888776544
No 134
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.26 E-value=0.12 Score=54.11 Aligned_cols=55 Identities=29% Similarity=0.446 Sum_probs=39.6
Q ss_pred cccccccceeeeccc-ccccCceeeeecCCCCCchhhHHHHHHHHHhhC--CCEEEEE
Q psy2896 122 QELLETGIKVIDLIC-PFSKGGKVGLFGGAGVGKTVNMMELINNIAKAH--SGLSVFT 176 (467)
Q Consensus 122 ~~~l~TGIr~ID~l~-pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~--~dv~V~~ 176 (467)
.+.+..-+.+++... .+.+|+.++++|++|+||||++..++......+ ..+.++.
T Consensus 117 ~~~l~~~l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit 174 (374)
T PRK14722 117 QSVLAANLPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT 174 (374)
T ss_pred HHHHHhcchhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 445556666666653 478899999999999999999999998654332 2344443
No 135
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.24 E-value=0.049 Score=56.70 Aligned_cols=98 Identities=14% Similarity=0.141 Sum_probs=53.2
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHHHHhhCCCE-EEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCC
Q psy2896 139 SKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGL-SVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNE 217 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv-~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~ 217 (467)
+++..+.|.|++|+|||+++..+++.......++ .+++=+.+.. ....++..+.+. +.. .. ......
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~-~~~~~~~~i~~~--l~~------~~---~~~~~~ 120 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR-TRYAIFSEIARQ--LFG------HP---PPSSGL 120 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC-CHHHHHHHHHHH--hcC------CC---CCCCCC
Confidence 4557799999999999999999998765443233 4444333222 223344433211 100 00 000011
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHH
Q psy2896 218 PSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYT 254 (467)
Q Consensus 218 ~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a 254 (467)
+.. ..--.+.+++...++.++|++|.+-.+.
T Consensus 121 ~~~------~~~~~~~~~l~~~~~~~viviDE~d~l~ 151 (394)
T PRK00411 121 SFD------ELFDKIAEYLDERDRVLIVALDDINYLF 151 (394)
T ss_pred CHH------HHHHHHHHHHHhcCCEEEEEECCHhHhh
Confidence 111 1111234555556788999999998655
No 136
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.24 E-value=0.012 Score=50.81 Aligned_cols=28 Identities=32% Similarity=0.381 Sum_probs=24.9
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELI 162 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~ 162 (467)
-+.+..|+.++|.|++|+|||||+..+.
T Consensus 9 sl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 9 LVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 3468889999999999999999999876
No 137
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.20 E-value=0.018 Score=56.36 Aligned_cols=66 Identities=14% Similarity=0.216 Sum_probs=44.5
Q ss_pred ccceeeecc-cccccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEE--EecCCchHHHHHHHHH
Q psy2896 127 TGIKVIDLI-CPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFT--GVGERTREGNDFYHEM 192 (467)
Q Consensus 127 TGIr~ID~l-~pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~--liGeR~~ev~e~~~~~ 192 (467)
-|-++++.. +.|-+|+.+.|+|++|+|||||+..+..-+....+.+.+-+ ..+-+++|.+++...+
T Consensus 15 ~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~i 83 (258)
T COG3638 15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDI 83 (258)
T ss_pred CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhc
Confidence 455665554 45999999999999999999999988763322222232222 4666677777666554
No 138
>PRK08181 transposase; Validated
Probab=95.18 E-value=0.049 Score=54.52 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=26.2
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHHHHhh
Q psy2896 139 SKGGKVGLFGGAGVGKTVNMMELINNIAKA 168 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~~~~~ 168 (467)
.+|+.+.|+|++|+|||.|+.-+++...++
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~ 133 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLAAAIGLALIEN 133 (269)
T ss_pred hcCceEEEEecCCCcHHHHHHHHHHHHHHc
Confidence 478999999999999999999998876544
No 139
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.11 E-value=0.013 Score=54.80 Aligned_cols=29 Identities=24% Similarity=0.448 Sum_probs=26.2
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 13 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 13 FAAERGEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999999988754
No 140
>PRK05748 replicative DNA helicase; Provisional
Probab=95.09 E-value=0.027 Score=60.21 Aligned_cols=46 Identities=20% Similarity=0.281 Sum_probs=41.6
Q ss_pred ccccccceeeecccc-cccCceeeeecCCCCCchhhHHHHHHHHHhh
Q psy2896 123 ELLETGIKVIDLICP-FSKGGKVGLFGGAGVGKTVNMMELINNIAKA 168 (467)
Q Consensus 123 ~~l~TGIr~ID~l~p-igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~ 168 (467)
..+.||+..+|.++. +.+|+-+.|-|.||+|||+++.+++.+.+..
T Consensus 184 ~gi~TG~~~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~ 230 (448)
T PRK05748 184 TGIPTGFTDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATK 230 (448)
T ss_pred CCccCChHHHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHh
Confidence 468999999999975 8899999999999999999999999987654
No 141
>PRK08506 replicative DNA helicase; Provisional
Probab=95.05 E-value=0.021 Score=61.56 Aligned_cols=52 Identities=21% Similarity=0.369 Sum_probs=44.0
Q ss_pred cccccceeeecccc-cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEE
Q psy2896 124 LLETGIKVIDLICP-FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVF 175 (467)
Q Consensus 124 ~l~TGIr~ID~l~p-igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~ 175 (467)
-+.||+..+|.++. +-+|+=+.|-|.||+|||+++.+++.+.++.+..|.+|
T Consensus 174 Gi~TG~~~LD~~~~G~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~f 226 (472)
T PRK08506 174 GLDTGFVELNKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFF 226 (472)
T ss_pred cccCChHHHHhhcCCCCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEE
Confidence 48899999999964 88999999999999999999999999986544345444
No 142
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.99 E-value=0.016 Score=49.68 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.6
Q ss_pred eeeeecCCCCCchhhHHHHHHHH
Q psy2896 143 KVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+++|.|+||+||||++.+++...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998754
No 143
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=94.97 E-value=0.011 Score=55.69 Aligned_cols=27 Identities=33% Similarity=0.549 Sum_probs=23.0
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHHH
Q psy2896 139 SKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+.++.+.|+|+.|+|||+|+..++...
T Consensus 18 ~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 18 GPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp --SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred hcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 457899999999999999999998865
No 144
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.95 E-value=0.021 Score=59.23 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=34.5
Q ss_pred cccccccccceeeec-ccccccCceeeeecCCCCCchhhHHHHHH
Q psy2896 120 SSQELLETGIKVIDL-ICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 120 ~~~~~l~TGIr~ID~-l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
.++..+- +..++|. =+.|.+|.-..+.||||||||||+.+||-
T Consensus 10 ~v~k~yg-~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 10 NVSKSFG-DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred eeeeecC-CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3444554 5677774 46699999999999999999999999885
No 145
>PRK13342 recombination factor protein RarA; Reviewed
Probab=94.90 E-value=0.084 Score=55.87 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=21.9
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHH
Q psy2896 140 KGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+...+.|+|++|+|||+|+..+++..
T Consensus 35 ~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 35 RLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34468899999999999999988754
No 146
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=94.86 E-value=0.017 Score=55.29 Aligned_cols=29 Identities=28% Similarity=0.365 Sum_probs=26.5
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|++++|.|++|+|||||+..|+..
T Consensus 26 l~i~~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 26 LSIGKGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999999988764
No 147
>PRK08760 replicative DNA helicase; Provisional
Probab=94.86 E-value=0.025 Score=61.08 Aligned_cols=53 Identities=23% Similarity=0.287 Sum_probs=43.8
Q ss_pred ccccccceeeecccc-cccCceeeeecCCCCCchhhHHHHHHHHHhhC-CCEEEE
Q psy2896 123 ELLETGIKVIDLICP-FSKGGKVGLFGGAGVGKTVNMMELINNIAKAH-SGLSVF 175 (467)
Q Consensus 123 ~~l~TGIr~ID~l~p-igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~-~dv~V~ 175 (467)
.-+.||+.-+|-++. +.+|+=+.|-|.||+|||+++.+++.+.+.++ ..|.+|
T Consensus 210 ~Gi~TG~~~LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~f 264 (476)
T PRK08760 210 TGLPTGYNDFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVF 264 (476)
T ss_pred CcccCCcHHHHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEE
Confidence 347899999999874 89999999999999999999999999876542 334444
No 148
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=94.84 E-value=0.16 Score=46.46 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=23.1
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHHHHhh
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKA 168 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~ 168 (467)
...-+.+.-+.|.|++|+|||+|+..+.....+.
T Consensus 18 ~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 18 AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3556778899999999999999999999887665
No 149
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.84 E-value=0.23 Score=49.69 Aligned_cols=39 Identities=26% Similarity=0.335 Sum_probs=30.3
Q ss_pred cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEE
Q psy2896 138 FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFT 176 (467)
Q Consensus 138 igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~ 176 (467)
..++..+.+.|++|+||||++..++....+.+..+.++.
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~ 107 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA 107 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 456789999999999999999999987765433444443
No 150
>PRK09165 replicative DNA helicase; Provisional
Probab=94.83 E-value=0.03 Score=60.87 Aligned_cols=46 Identities=26% Similarity=0.273 Sum_probs=41.5
Q ss_pred ccccccceeeeccc-ccccCceeeeecCCCCCchhhHHHHHHHHHhh
Q psy2896 123 ELLETGIKVIDLIC-PFSKGGKVGLFGGAGVGKTVNMMELINNIAKA 168 (467)
Q Consensus 123 ~~l~TGIr~ID~l~-pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~ 168 (467)
..+.||+.-+|.++ .+.+|+=+.|-|.||+|||+++.+++.+.+++
T Consensus 198 ~gi~TG~~~LD~~~gG~~~g~livIaarpg~GKT~~al~ia~~~a~~ 244 (497)
T PRK09165 198 SGISTGLRDLDSKLGGLHPSDLIILAGRPSMGKTALATNIAFNAAKA 244 (497)
T ss_pred CcccCChHHHhhhcCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHh
Confidence 45789999999987 59999999999999999999999999988754
No 151
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.81 E-value=0.018 Score=53.44 Aligned_cols=29 Identities=24% Similarity=0.340 Sum_probs=26.3
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|++.+|.|++|+|||||+..|+..
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 21 LNIEAGEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56889999999999999999999988754
No 152
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.78 E-value=0.017 Score=55.18 Aligned_cols=29 Identities=28% Similarity=0.452 Sum_probs=26.1
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 21 LTVPEGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred EEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999999987754
No 153
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.76 E-value=0.018 Score=54.90 Aligned_cols=29 Identities=28% Similarity=0.386 Sum_probs=26.4
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 24 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 24 FHITKGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999999988764
No 154
>PRK12377 putative replication protein; Provisional
Probab=94.74 E-value=0.12 Score=51.07 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=24.0
Q ss_pred CceeeeecCCCCCchhhHHHHHHHHHhh
Q psy2896 141 GGKVGLFGGAGVGKTVNMMELINNIAKA 168 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~~~~~ 168 (467)
.+-+.|+|++|+|||.|+..|++...+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~ 128 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAK 128 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3568899999999999999999987654
No 155
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.72 E-value=0.019 Score=54.40 Aligned_cols=47 Identities=26% Similarity=0.379 Sum_probs=34.1
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEE---EEEecCC
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSV---FTGVGER 181 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V---~~liGeR 181 (467)
=+.+.+|++++|.|++|+|||||+..|+....-..+.+.+ ++.+.+.
T Consensus 25 s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~ 74 (204)
T cd03250 25 NLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQE 74 (204)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecC
Confidence 3568999999999999999999999988754333333433 3444444
No 156
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.71 E-value=0.18 Score=49.15 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=23.7
Q ss_pred CceeeeecCCCCCchhhHHHHHHHHHh
Q psy2896 141 GGKVGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
|+-..|+|++|+|||+|+.+++.+++.
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~ 27 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMAL 27 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhc
Confidence 566789999999999999999998763
No 157
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.71 E-value=0.063 Score=55.23 Aligned_cols=28 Identities=25% Similarity=0.449 Sum_probs=24.0
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHHHH
Q psy2896 139 SKGGKVGLFGGAGVGKTVNMMELINNIA 166 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~~~ 166 (467)
++++.+.|+|++|+|||+++..++++..
T Consensus 38 ~~~~~i~I~G~~GtGKT~l~~~~~~~l~ 65 (365)
T TIGR02928 38 SRPSNVFIYGKTGTGKTAVTKYVMKELE 65 (365)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4557899999999999999999988654
No 158
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=94.71 E-value=0.019 Score=55.73 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=26.3
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 23 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 23 LNINPGEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999999988754
No 159
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.71 E-value=0.019 Score=55.19 Aligned_cols=30 Identities=27% Similarity=0.389 Sum_probs=27.0
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 24 l~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 24 FSIKPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 578999999999999999999999988643
No 160
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.70 E-value=0.019 Score=54.17 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=26.5
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+.+|++++|.|++|+|||||+..|+-.
T Consensus 18 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 18 NLTIEKGKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 345889999999999999999999988764
No 161
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.67 E-value=0.02 Score=53.48 Aligned_cols=28 Identities=18% Similarity=0.319 Sum_probs=25.4
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
+.+-+|.++.|.||+|+|||||+.+++.
T Consensus 24 l~v~~Ge~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 24 LSVRAGEFIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred eeecCCceEEEeCCCCccHHHHHHHHHh
Confidence 4588999999999999999999998875
No 162
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=94.66 E-value=0.021 Score=54.92 Aligned_cols=30 Identities=27% Similarity=0.297 Sum_probs=27.0
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+.+.+|+.++|.|++|+|||||+..|+-..
T Consensus 21 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 21 LDIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 568999999999999999999999888654
No 163
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.66 E-value=0.02 Score=55.44 Aligned_cols=29 Identities=28% Similarity=0.339 Sum_probs=26.5
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 22 LSINPGEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999999988764
No 164
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.64 E-value=0.02 Score=55.23 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=27.0
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 26 LSVPKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 568999999999999999999999887643
No 165
>PRK05541 adenylylsulfate kinase; Provisional
Probab=94.64 E-value=0.22 Score=45.92 Aligned_cols=31 Identities=26% Similarity=0.201 Sum_probs=26.9
Q ss_pred ccccCceeeeecCCCCCchhhHHHHHHHHHh
Q psy2896 137 PFSKGGKVGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 137 pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
+.-+|.-+.|.|.+|+||||++..++.....
T Consensus 3 ~~~~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 3 MKPNGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4567889999999999999999999887654
No 166
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.63 E-value=0.021 Score=54.24 Aligned_cols=30 Identities=27% Similarity=0.308 Sum_probs=26.8
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+.+|++++|.|++|+|||||+..|+..
T Consensus 21 sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 21 NISISAGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999999999988764
No 167
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.63 E-value=0.021 Score=54.17 Aligned_cols=30 Identities=30% Similarity=0.489 Sum_probs=26.9
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 20 SFSVEKGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 456899999999999999999999988764
No 168
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.60 E-value=0.022 Score=54.40 Aligned_cols=34 Identities=24% Similarity=0.291 Sum_probs=28.4
Q ss_pred eeecc-cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 131 VIDLI-CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 131 ~ID~l-~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+++.+ +.+.+|+.++|.|++|+|||||+..|+..
T Consensus 19 il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 19 ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 34433 56889999999999999999999988764
No 169
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.58 E-value=0.018 Score=50.53 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=25.6
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 6 ~~i~~g~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 6 LEIKPGEIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEETTSEEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEcCCCEEEEEccCCCccccceeeeccc
Confidence 45789999999999999999999977654
No 170
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.58 E-value=0.022 Score=54.09 Aligned_cols=29 Identities=24% Similarity=0.256 Sum_probs=26.3
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|+|++|+|||||+..|+-.
T Consensus 21 ~~i~~G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 21 LTVKKGEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999999988764
No 171
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.57 E-value=0.022 Score=54.10 Aligned_cols=29 Identities=28% Similarity=0.264 Sum_probs=26.2
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 22 ~~i~~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 22 LTIKKGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999999999988754
No 172
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.57 E-value=0.022 Score=54.21 Aligned_cols=29 Identities=24% Similarity=0.332 Sum_probs=26.2
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 21 LTVEPGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999999988764
No 173
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.57 E-value=0.021 Score=54.01 Aligned_cols=29 Identities=28% Similarity=0.273 Sum_probs=26.1
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 21 LDLYAGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999999999988764
No 174
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.56 E-value=0.031 Score=55.48 Aligned_cols=45 Identities=20% Similarity=0.440 Sum_probs=34.1
Q ss_pred eeecccc-cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEE
Q psy2896 131 VIDLICP-FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVF 175 (467)
Q Consensus 131 ~ID~l~p-igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~ 175 (467)
.++.+.| .|+..++||.|+||+|||||.-.+++...+.+..|.|+
T Consensus 18 ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVl 63 (266)
T PF03308_consen 18 LLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVL 63 (266)
T ss_dssp HHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred HHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEE
Confidence 4555555 68889999999999999999999999887765667777
No 175
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.56 E-value=0.14 Score=51.59 Aligned_cols=39 Identities=28% Similarity=0.536 Sum_probs=30.9
Q ss_pred cccCceeeeecCCCCCchhhHHHHHHHHHhh-C-CCEEEEE
Q psy2896 138 FSKGGKVGLFGGAGVGKTVNMMELINNIAKA-H-SGLSVFT 176 (467)
Q Consensus 138 igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~-~-~dv~V~~ 176 (467)
+.+|..++|.|+.|+||||++..++...... + ..|.++.
T Consensus 191 ~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~ 231 (282)
T TIGR03499 191 LEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALIT 231 (282)
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 3578899999999999999999999877654 2 3455554
No 176
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=94.55 E-value=0.02 Score=55.28 Aligned_cols=29 Identities=28% Similarity=0.321 Sum_probs=26.4
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|++++|.|++|+|||||+..|+..
T Consensus 21 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 21 FSVRPGEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred EEecCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 56899999999999999999999988764
No 177
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.53 E-value=0.068 Score=50.18 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=20.5
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2896 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
|+.|+|+||+||||++..++..
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999875
No 178
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=94.53 E-value=0.055 Score=54.38 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=20.2
Q ss_pred eeeeecCCCCCchhhHHHHHHHH
Q psy2896 143 KVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
-+++|||||.|||||+.-|++.+
T Consensus 54 HvLl~GPPGlGKTTLA~IIA~Em 76 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHIIANEL 76 (332)
T ss_pred eEEeeCCCCCcHHHHHHHHHHHh
Confidence 37899999999999999888765
No 179
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.52 E-value=0.19 Score=49.18 Aligned_cols=49 Identities=20% Similarity=0.343 Sum_probs=30.2
Q ss_pred CceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHH
Q psy2896 141 GGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEM 192 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~ 192 (467)
.+.+.|.|++|+|||+|+..++..... ..+.+...+..+. ...+++..+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~--~~~~~~~~~~~~~-~~~~~l~~i 91 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ--ERVVAAKLVNTRV-DAEDLLRMV 91 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC--CCeEEeeeeCCCC-CHHHHHHHH
Confidence 346889999999999999998765432 2333333333222 234555554
No 180
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.52 E-value=0.093 Score=56.60 Aligned_cols=110 Identities=17% Similarity=0.090 Sum_probs=57.6
Q ss_pred CceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHH
Q psy2896 141 GGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSG 220 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~ 220 (467)
++-..+.|++|+|||+++..+++...+.+.. -.-.||+-.. -.++.... - ..++-++.++.--.
T Consensus 40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~--~~~pCg~C~s-C~~i~~g~-----~--------~dviEIdaas~~gV 103 (484)
T PRK14956 40 GHAYIFFGPRGVGKTTIARILAKRLNCENPI--GNEPCNECTS-CLEITKGI-----S--------SDVLEIDAASNRGI 103 (484)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCccccc--CccccCCCcH-HHHHHccC-----C--------ccceeechhhcccH
Confidence 3457999999999999999999876543211 1123333222 11211111 0 11222222221112
Q ss_pred HHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHHH-HhHHHHHhcCCCCC
Q psy2896 221 NRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTL-AGTEVSALLGRMPS 269 (467)
Q Consensus 221 ~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a~-A~reis~~~ge~p~ 269 (467)
...+.. ...+.+-...|+..++|+|.+-++.. |++.+=..+.|||.
T Consensus 104 d~IReL---~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~ 150 (484)
T PRK14956 104 ENIREL---RDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPA 150 (484)
T ss_pred HHHHHH---HHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCC
Confidence 222211 11112222347778888898877766 66777777788776
No 181
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.52 E-value=0.023 Score=52.10 Aligned_cols=30 Identities=27% Similarity=0.331 Sum_probs=26.9
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 21 LSVRRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 668999999999999999999999887643
No 182
>PRK06526 transposase; Provisional
Probab=94.51 E-value=0.074 Score=52.78 Aligned_cols=30 Identities=27% Similarity=0.271 Sum_probs=25.9
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHHHHhh
Q psy2896 139 SKGGKVGLFGGAGVGKTVNMMELINNIAKA 168 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~~~~~ 168 (467)
-+++.+.|.|++|+|||.|+..++....+.
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 468899999999999999999998876543
No 183
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=94.51 E-value=0.25 Score=46.03 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=23.1
Q ss_pred ceeeeecCCCCCchhhHHHHHHHHHh
Q psy2896 142 GKVGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
+..++.|++|+|||+++..+++.+..
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 67899999999999999999987654
No 184
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.50 E-value=0.33 Score=48.01 Aligned_cols=30 Identities=20% Similarity=0.051 Sum_probs=24.7
Q ss_pred ccccCceeeeecCCCCCchhhHHHHHHHHH
Q psy2896 137 PFSKGGKVGLFGGAGVGKTVNMMELINNIA 166 (467)
Q Consensus 137 pigrGqr~~I~g~~g~GKt~L~~~i~~~~~ 166 (467)
+-..+..+.++|+||+|||+++..+++...
T Consensus 38 ~~~~~~~vll~GppGtGKTtlA~~ia~~l~ 67 (261)
T TIGR02881 38 TSKQVLHMIFKGNPGTGKTTVARILGKLFK 67 (261)
T ss_pred CCCCcceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 345567789999999999999999987643
No 185
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.49 E-value=0.023 Score=54.74 Aligned_cols=29 Identities=31% Similarity=0.543 Sum_probs=26.3
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|++++|.|++|+|||||+..|+..
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 21 LSVKQGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred eEecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999999988754
No 186
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.49 E-value=0.021 Score=54.31 Aligned_cols=29 Identities=17% Similarity=0.347 Sum_probs=26.1
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 20 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 20 FEVKPGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 46899999999999999999999988764
No 187
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.49 E-value=0.023 Score=53.22 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=24.7
Q ss_pred cccccCceeeeecCCCCCchhhHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELI 162 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~ 162 (467)
+++.+|.+++|.|++|+|||||+..+.
T Consensus 16 l~i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 16 VSIPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 469999999999999999999998764
No 188
>PRK04296 thymidine kinase; Provisional
Probab=94.48 E-value=0.17 Score=47.78 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=26.9
Q ss_pred CceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEE
Q psy2896 141 GGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVF 175 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~ 175 (467)
|.-..|.|++|+||||++..++.+....+..+.++
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 66788999999999999999998876543333333
No 189
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.48 E-value=0.024 Score=54.28 Aligned_cols=32 Identities=28% Similarity=0.434 Sum_probs=27.5
Q ss_pred ecccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 133 DLICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 133 D~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
|.=+.+.+|+.++|+|++|+|||||+..|+-.
T Consensus 18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 33466889999999999999999999988753
No 190
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.47 E-value=0.023 Score=54.71 Aligned_cols=31 Identities=29% Similarity=0.403 Sum_probs=27.3
Q ss_pred cccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 134 LICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 134 ~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (230)
T TIGR03410 19 VSLEVPKGEVTCVLGRNGVGKTTLLKTLMGL 49 (230)
T ss_pred eeeEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456899999999999999999999988764
No 191
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.46 E-value=0.17 Score=48.92 Aligned_cols=32 Identities=31% Similarity=0.467 Sum_probs=26.3
Q ss_pred CceeeeecCCCCCchhhHHHHHHHHHhhCCCE
Q psy2896 141 GGKVGLFGGAGVGKTVNMMELINNIAKAHSGL 172 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv 172 (467)
...+-|+|++|+|||.|++.+++...+.+++.
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~ 65 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGK 65 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccc
Confidence 34688999999999999999998876665554
No 192
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.43 E-value=0.024 Score=55.39 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=26.4
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|++++|.|++|+|||||+..|+..
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 24 LEIPDNTITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 56889999999999999999999988764
No 193
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=94.42 E-value=0.025 Score=54.89 Aligned_cols=29 Identities=28% Similarity=0.332 Sum_probs=26.2
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 22 FTVRPGEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56889999999999999999999988754
No 194
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.42 E-value=0.3 Score=44.94 Aligned_cols=29 Identities=31% Similarity=0.382 Sum_probs=25.3
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHHHhh
Q psy2896 140 KGGKVGLFGGAGVGKTVNMMELINNIAKA 168 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~~~~ 168 (467)
+|..+.|.|.+|+||||++..++......
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~ 31 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREA 31 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 58899999999999999999999876543
No 195
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.42 E-value=0.026 Score=55.93 Aligned_cols=35 Identities=23% Similarity=0.402 Sum_probs=28.8
Q ss_pred eeecccccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2896 131 VIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 131 ~ID~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+++.+..+.+|++++|.|++|+|||||+..|+.-.
T Consensus 16 ~l~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~ 50 (255)
T cd03236 16 KLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKL 50 (255)
T ss_pred hhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 44444448899999999999999999999887653
No 196
>KOG1433|consensus
Probab=94.41 E-value=0.085 Score=54.15 Aligned_cols=48 Identities=31% Similarity=0.382 Sum_probs=42.6
Q ss_pred ccccccccccccceeeecccc--cccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 117 ELSSSQELLETGIKVIDLICP--FSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 117 ~R~~~~~~l~TGIr~ID~l~p--igrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
++..-.-.+.||.+.+|-++- ++-|.-.-|+|+||+|||-||..++..
T Consensus 85 ~~~~~~~~l~Tg~~~lD~lL~gGi~~g~~TEi~G~p~~GKtQlc~~~~v~ 134 (326)
T KOG1433|consen 85 QLRSELGFLSTGSKALDKLLGGGIETGSLTELVGPPGSGKTQLCHTLAVT 134 (326)
T ss_pred HhhccceeeccchhhhhHhhccCcccCceeEEecCCCccHHHHHHHHHHh
Confidence 566667789999999999998 999999999999999999999777664
No 197
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.39 E-value=0.025 Score=55.36 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=25.7
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 26 LDFNQNEITALIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 5688999999999999999999998875
No 198
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.39 E-value=0.027 Score=53.27 Aligned_cols=30 Identities=27% Similarity=0.348 Sum_probs=26.3
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+.+|++++|.|++|+|||||+..|+..
T Consensus 21 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 21 SFHLPAGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999999999987653
No 199
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.39 E-value=0.024 Score=54.23 Aligned_cols=29 Identities=24% Similarity=0.343 Sum_probs=26.2
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 25 ~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 25 LSVEEGEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999999988754
No 200
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.38 E-value=0.13 Score=50.94 Aligned_cols=46 Identities=30% Similarity=0.529 Sum_probs=34.7
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHHHhhCCCE-EEEEEecCCchHHHHHHHHHHh
Q psy2896 140 KGGKVGLFGGAGVGKTVNMMELINNIAKAHSGL-SVFTGVGERTREGNDFYHEMIE 194 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv-~V~~liGeR~~ev~e~~~~~~~ 194 (467)
+|-.+.++|++|+|||.|+.-|++.+.+. ++ +.|. .+.|++.++++
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~--g~sv~f~-------~~~el~~~Lk~ 150 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKA--GISVLFI-------TAPDLLSKLKA 150 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEE-------EHHHHHHHHHH
Confidence 89999999999999999999999988743 33 3333 34566666643
No 201
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.38 E-value=0.026 Score=54.83 Aligned_cols=30 Identities=27% Similarity=0.333 Sum_probs=26.8
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 22 SLDIPSGELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 356899999999999999999999988764
No 202
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=94.37 E-value=0.026 Score=54.82 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=26.4
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|++++|.|++|+|||||+..|+-.
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 23 LDCPQGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 66899999999999999999999988754
No 203
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.36 E-value=0.026 Score=54.95 Aligned_cols=29 Identities=31% Similarity=0.369 Sum_probs=26.2
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|+|++|+|||||+..|+-.
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (242)
T cd03295 22 LEIAKGEFLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999999988753
No 204
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.36 E-value=0.026 Score=53.68 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=28.4
Q ss_pred eeecc-cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 131 VIDLI-CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 131 ~ID~l-~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+++.+ +.+.+|++++|.|++|+|||||+..|+..
T Consensus 17 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34443 46899999999999999999999988764
No 205
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.35 E-value=0.026 Score=53.67 Aligned_cols=29 Identities=31% Similarity=0.305 Sum_probs=26.0
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 23 ~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 23 LHIRKGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999999877653
No 206
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.34 E-value=0.25 Score=43.38 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=18.4
Q ss_pred eeeecCCCCCchhhHHHHHHH
Q psy2896 144 VGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 144 ~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.|+||+||||++.+++..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999988764
No 207
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.33 E-value=0.07 Score=49.66 Aligned_cols=23 Identities=26% Similarity=0.202 Sum_probs=20.2
Q ss_pred ceeeeecCCCCCchhhHHHHHHH
Q psy2896 142 GKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
-++.|.|++|+|||+++..++..
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~ 24 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQ 24 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHH
Confidence 36899999999999999998764
No 208
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.33 E-value=0.027 Score=53.55 Aligned_cols=29 Identities=28% Similarity=0.381 Sum_probs=26.2
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 21 LDIADGEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999999999988764
No 209
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.32 E-value=0.03 Score=53.23 Aligned_cols=32 Identities=19% Similarity=0.324 Sum_probs=28.7
Q ss_pred ecccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 133 DLICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 133 D~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
|.=+.+.+|++++|.|++|+|||||+..|+..
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl 47 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 66678999999999999999999999988764
No 210
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.31 E-value=0.18 Score=55.45 Aligned_cols=28 Identities=29% Similarity=0.139 Sum_probs=22.5
Q ss_pred cCce-eeeecCCCCCchhhHHHHHHHHHh
Q psy2896 140 KGGK-VGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 140 rGqr-~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
+... ..+.|++|+|||+++..+++...+
T Consensus 36 rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 36 KVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3433 578999999999999999986643
No 211
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.30 E-value=0.04 Score=54.54 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=25.9
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 42 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G 69 (268)
T PRK14248 42 MDIEKHAVTALIGPSGCGKSTFLRSINR 69 (268)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 5688999999999999999999998876
No 212
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.30 E-value=0.027 Score=54.45 Aligned_cols=29 Identities=17% Similarity=0.367 Sum_probs=26.5
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 21 LDVRRGEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999999988764
No 213
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.30 E-value=0.028 Score=51.97 Aligned_cols=29 Identities=31% Similarity=0.454 Sum_probs=26.1
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..++..
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 21 LTVEKGEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 55889999999999999999999988764
No 214
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.27 E-value=0.027 Score=52.44 Aligned_cols=30 Identities=27% Similarity=0.247 Sum_probs=26.9
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+.+.+|++.+|.|++|+|||||+..|+...
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 21 FEVRAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 568899999999999999999999888643
No 215
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=94.26 E-value=0.028 Score=53.90 Aligned_cols=30 Identities=27% Similarity=0.467 Sum_probs=26.7
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 25 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 25 SFSIKKGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 356889999999999999999999988764
No 216
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.26 E-value=0.43 Score=45.45 Aligned_cols=43 Identities=21% Similarity=0.303 Sum_probs=30.8
Q ss_pred eeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHH
Q psy2896 143 KVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREG 185 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev 185 (467)
.+.++|+.|+||||.+.-++.....++..+.++.+=.-|.--+
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~ 45 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAV 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHH
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHH
Confidence 4789999999999999999998776655566665443444433
No 217
>PRK06921 hypothetical protein; Provisional
Probab=94.24 E-value=0.18 Score=50.27 Aligned_cols=29 Identities=24% Similarity=0.458 Sum_probs=25.4
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHHHhh
Q psy2896 140 KGGKVGLFGGAGVGKTVNMMELINNIAKA 168 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~~~~ 168 (467)
.+.-+.++|++|+|||.|+..|++.+.+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~ 144 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRK 144 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhh
Confidence 47789999999999999999999876654
No 218
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.24 E-value=0.03 Score=51.93 Aligned_cols=33 Identities=27% Similarity=0.536 Sum_probs=28.2
Q ss_pred ecccccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2896 133 DLICPFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 133 D~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
|.=+.+.+|+.++|.|++|+|||||+..++...
T Consensus 20 ~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 20 NLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 334568899999999999999999999988753
No 219
>PRK08727 hypothetical protein; Validated
Probab=94.24 E-value=0.57 Score=45.63 Aligned_cols=27 Identities=33% Similarity=0.303 Sum_probs=22.8
Q ss_pred ceeeeecCCCCCchhhHHHHHHHHHhh
Q psy2896 142 GKVGLFGGAGVGKTVNMMELINNIAKA 168 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~~~~~ 168 (467)
+-+.|.|++|+|||.|+.-+++...+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~ 68 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQA 68 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 448999999999999999988875543
No 220
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.23 E-value=0.034 Score=56.56 Aligned_cols=37 Identities=27% Similarity=0.545 Sum_probs=32.9
Q ss_pred ceeeeccc-ccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2896 129 IKVIDLIC-PFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 129 Ir~ID~l~-pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
++++|.+. .+.+|+..+|+|.||+|||+++..|++-.
T Consensus 18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~ll 55 (316)
T COG0444 18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLL 55 (316)
T ss_pred EEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhcc
Confidence 68888774 59999999999999999999999998854
No 221
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=94.22 E-value=0.029 Score=54.85 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=27.6
Q ss_pred ecccccccCceeeeecCCCCCchhhHHHHHH
Q psy2896 133 DLICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 133 D~l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
|.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus 21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14240 21 KINLDIEENQVTALIGPSGCGKSTFLRTLNR 51 (250)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4456788999999999999999999998875
No 222
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=94.22 E-value=0.029 Score=54.35 Aligned_cols=30 Identities=20% Similarity=0.281 Sum_probs=26.7
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+.+|++++|.|++|+|||||+..|+..
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 20 NLTVKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred ceEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 356899999999999999999999988763
No 223
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.22 E-value=0.029 Score=53.70 Aligned_cols=30 Identities=23% Similarity=0.210 Sum_probs=26.6
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+.+|++++|.|++|+|||||+..|+.-
T Consensus 31 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 31 DFHVDAGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred eEEECCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 356899999999999999999999988753
No 224
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.20 E-value=0.03 Score=52.74 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=28.6
Q ss_pred eeecccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 131 VIDLICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 131 ~ID~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
..|.=+.+.+|++++|.|++|+|||||+..|+..
T Consensus 16 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 16 LFDLSITFLPSAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred EEEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3443456889999999999999999999988764
No 225
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.19 E-value=0.03 Score=54.02 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=26.6
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+.+|+.++|+|++|+|||||+..|+--
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 22 SLDIPAGETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 346889999999999999999999988754
No 226
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.17 E-value=0.03 Score=54.82 Aligned_cols=30 Identities=20% Similarity=0.302 Sum_probs=26.6
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+.+|++++|.|++|+|||||+..|+-.
T Consensus 24 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 24 DLKIPQNGVFALMGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 356899999999999999999999987764
No 227
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=94.16 E-value=0.5 Score=43.86 Aligned_cols=29 Identities=24% Similarity=0.292 Sum_probs=25.3
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHHHHh
Q psy2896 139 SKGGKVGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
.+|..+.|.|.+|+||||++..++.....
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 56889999999999999999999987543
No 228
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.15 E-value=0.025 Score=52.61 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=26.4
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+.+|++++|.|++|+|||||+..|+..
T Consensus 19 ~~~i~~G~~~~l~G~nGsGKStLl~~i~G~ 48 (180)
T cd03214 19 SLSIEAGEIVGILGPNGAGKSTLLKTLAGL 48 (180)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345889999999999999999999988764
No 229
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=94.15 E-value=0.029 Score=55.14 Aligned_cols=30 Identities=17% Similarity=0.210 Sum_probs=26.8
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 24 sl~i~~Ge~~~i~G~nGsGKSTLl~~laGl 53 (258)
T PRK14241 24 NLNIEPRSVTAFIGPSGCGKSTVLRTLNRM 53 (258)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 356899999999999999999999988864
No 230
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.15 E-value=0.03 Score=53.45 Aligned_cols=30 Identities=33% Similarity=0.469 Sum_probs=26.7
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 22 SLNVYKGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 356889999999999999999999988764
No 231
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.14 E-value=0.031 Score=55.03 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=26.8
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+.+|+.++|+|++|+|||||+..|+-.
T Consensus 32 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 61 (259)
T PRK14274 32 NLSIPENEVTAIIGPSGCGKSTFIKTLNLM 61 (259)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 356889999999999999999999988864
No 232
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.14 E-value=0.031 Score=53.43 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=26.3
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 25 ~~i~~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 25 LTIRAGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999999988764
No 233
>KOG1434|consensus
Probab=94.14 E-value=0.0041 Score=61.22 Aligned_cols=120 Identities=17% Similarity=0.166 Sum_probs=69.4
Q ss_pred cccccccceeeecccc--cccCceeeeecCCCCCchhhHHHHHHHHHh--hC---CCEEEE-----EEecCCchHHHHHH
Q psy2896 122 QELLETGIKVIDLICP--FSKGGKVGLFGGAGVGKTVNMMELINNIAK--AH---SGLSVF-----TGVGERTREGNDFY 189 (467)
Q Consensus 122 ~~~l~TGIr~ID~l~p--igrGqr~~I~g~~g~GKt~L~~~i~~~~~~--~~---~dv~V~-----~liGeR~~ev~e~~ 189 (467)
--.+.||.+.+|.++. |-.=...-|||.+|+|||-|+.+++.++.- .. .+-.+| .+.-+|-.+++|-+
T Consensus 94 v~~ItTgs~~lD~ILGGGI~~m~iTEifGefr~GKTQlshtLcVt~QlPr~~Gg~~Gk~ifIDTEgtFrpdRi~~IAe~~ 173 (335)
T KOG1434|consen 94 VGSITTGSSALDDILGGGIPSMSITEIFGEFRCGKTQLSHTLCVTVQLPREMGGVGGKAIFIDTEGTFRPDRIKDIAERF 173 (335)
T ss_pred cceeecchHHHhhhhcCCccchhhHHHcCCCCcCccceeeEEEEEeecchhhCCCCceEEEEecCCccchHHHHHHHHHh
Confidence 3457899999999876 223344679999999999988887765311 11 122333 25555555555432
Q ss_pred HHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHHH
Q psy2896 190 HEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTL 255 (467)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a~ 255 (467)
+-. +.-+++ |.. .+-.-+ -.......--.++.|.+.|+.+|+|+||++-+.|
T Consensus 174 ~~d-~d~~Ld-------NI~-y~Ra~~-----se~qmelv~~L~~~~se~g~~rlvIVDsIma~FR 225 (335)
T KOG1434|consen 174 KVD-PDFTLD-------NIL-YFRAYN-----SEEQMELVYLLGDFLSEHGKYRLVIVDSIMALFR 225 (335)
T ss_pred CCC-HHHHHH-------HHH-HHHHcC-----hHHHHHHHHHHHHHHhhcCcEEEEEEeceehhee
Confidence 211 112232 221 100000 0112233345677888889999999999985554
No 234
>PRK06893 DNA replication initiation factor; Validated
Probab=94.14 E-value=0.19 Score=48.85 Aligned_cols=33 Identities=15% Similarity=0.170 Sum_probs=25.5
Q ss_pred eeeeecCCCCCchhhHHHHHHHHHhhCCCEEEE
Q psy2896 143 KVGLFGGAGVGKTVNMMELINNIAKAHSGLSVF 175 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~ 175 (467)
.+.|+|++|+|||.|+..+++...+++..+.++
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~ 73 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYI 73 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEe
Confidence 468999999999999999998765554444333
No 235
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=94.14 E-value=0.03 Score=54.18 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=27.2
Q ss_pred cccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 134 LICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 134 ~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
.=+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 21 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (237)
T cd03252 21 ISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF 51 (237)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999999999988864
No 236
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.13 E-value=0.031 Score=53.31 Aligned_cols=30 Identities=30% Similarity=0.471 Sum_probs=26.6
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+.+.+|+.++|.|++|+|||||+..|+.-.
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 26 FTVKPGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 568899999999999999999999887643
No 237
>PRK08118 topology modulation protein; Reviewed
Probab=94.13 E-value=0.034 Score=51.45 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.9
Q ss_pred ceeeeecCCCCCchhhHHHHHHHH
Q psy2896 142 GKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+|+.|+|++|+|||||+..++...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998764
No 238
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.12 E-value=0.026 Score=55.42 Aligned_cols=46 Identities=15% Similarity=0.366 Sum_probs=34.9
Q ss_pred eeecc-cccccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEE
Q psy2896 131 VIDLI-CPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFT 176 (467)
Q Consensus 131 ~ID~l-~pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~ 176 (467)
+.|.+ +.+-||.-.+|.||||+|||||+..|.-...-+.+.+-+++
T Consensus 23 Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G 69 (263)
T COG1127 23 ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDG 69 (263)
T ss_pred EecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcC
Confidence 44544 45999999999999999999999988765444444556654
No 239
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=94.12 E-value=0.03 Score=54.76 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=26.3
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 27 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 27 LEFEQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999999988753
No 240
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.11 E-value=0.033 Score=51.22 Aligned_cols=31 Identities=19% Similarity=0.254 Sum_probs=27.3
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
=+.+.+|++++|.|++|+|||||+..|+...
T Consensus 21 ~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 21 SFEIKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568899999999999999999999887643
No 241
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=94.09 E-value=0.032 Score=54.07 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=26.2
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 6 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 34 (230)
T TIGR01184 6 LTIQQGEFISLIGHSGCGKSTLLNLISGL 34 (230)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56889999999999999999999988764
No 242
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.07 E-value=0.035 Score=51.24 Aligned_cols=29 Identities=17% Similarity=0.346 Sum_probs=26.4
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 23 FSIEPGESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 56889999999999999999999988864
No 243
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=94.07 E-value=0.032 Score=53.32 Aligned_cols=29 Identities=17% Similarity=0.398 Sum_probs=26.1
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (218)
T cd03290 22 IRIPTGQLTMIVGQVGCGKSSLLLAILGE 50 (218)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46889999999999999999999988764
No 244
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=94.07 E-value=0.032 Score=53.96 Aligned_cols=30 Identities=20% Similarity=0.534 Sum_probs=27.0
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+.+.+|++++|.|++|+|||||+..|+...
T Consensus 7 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 7 LSLKRGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 568899999999999999999999988754
No 245
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.06 E-value=0.032 Score=54.50 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=26.2
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 23 ~~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14262 23 TMKIFKNQITAIIGPSGCGKTTLLRSINR 51 (250)
T ss_pred eEeecCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35688999999999999999999998875
No 246
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=94.06 E-value=0.033 Score=54.95 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=26.4
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|++++|.|++|+|||||+..|+..
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 22 LTLESGELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999999988764
No 247
>PRK05595 replicative DNA helicase; Provisional
Probab=94.06 E-value=0.066 Score=57.26 Aligned_cols=53 Identities=19% Similarity=0.333 Sum_probs=43.4
Q ss_pred ccccccceeeecccc-cccCceeeeecCCCCCchhhHHHHHHHHHhh-CCCEEEE
Q psy2896 123 ELLETGIKVIDLICP-FSKGGKVGLFGGAGVGKTVNMMELINNIAKA-HSGLSVF 175 (467)
Q Consensus 123 ~~l~TGIr~ID~l~p-igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~-~~dv~V~ 175 (467)
..+.||+..+|.++- +.+|+=+.|-|.||+|||+++.+++.+.+.+ +..|.+|
T Consensus 182 ~gi~tg~~~ld~~~~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~f 236 (444)
T PRK05595 182 TGVASGFRELDAKTSGFQKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIF 236 (444)
T ss_pred CcccCChHHHHHhcCCCCCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEE
Confidence 357899999999875 8899999999999999999999999986543 3334444
No 248
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.04 E-value=0.033 Score=54.23 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=27.7
Q ss_pred ecccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 133 DLICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 133 D~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 21 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 21 DISVKFEGGAIYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34466889999999999999999999988764
No 249
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.04 E-value=0.033 Score=53.93 Aligned_cols=33 Identities=30% Similarity=0.377 Sum_probs=26.9
Q ss_pred eeeecc-cccccCceeeeecCCCCCchhhHHHHH
Q psy2896 130 KVIDLI-CPFSKGGKVGLFGGAGVGKTVNMMELI 162 (467)
Q Consensus 130 r~ID~l-~pigrGqr~~I~g~~g~GKt~L~~~i~ 162 (467)
.+++.. +.+.+|+.+.|+||||+|||||+.-|-
T Consensus 16 ~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 16 EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 455444 459999999999999999999998653
No 250
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=94.03 E-value=0.034 Score=53.33 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=29.6
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHHHHhhCCCE
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGL 172 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv 172 (467)
+.+.+|+.++|.|++|+|||||+..|+.......+.+
T Consensus 8 ~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i 44 (213)
T PRK15177 8 FVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDF 44 (213)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCE
Confidence 5689999999999999999999998886543333344
No 251
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.03 E-value=0.026 Score=56.62 Aligned_cols=30 Identities=20% Similarity=0.395 Sum_probs=27.0
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~ 57 (286)
T PRK13646 28 TEFEQGKYYAIVGQTGSGKSTLIQNINALL 57 (286)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 568899999999999999999999888653
No 252
>PRK10908 cell division protein FtsE; Provisional
Probab=94.03 E-value=0.033 Score=53.36 Aligned_cols=29 Identities=21% Similarity=0.222 Sum_probs=26.3
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 23 FHMRPGEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56889999999999999999999988754
No 253
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=94.03 E-value=0.033 Score=54.81 Aligned_cols=32 Identities=28% Similarity=0.446 Sum_probs=27.9
Q ss_pred ecccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 133 DLICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 133 D~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 24 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (258)
T PRK11701 24 DVSFDLYPGEVLGIVGESGSGKTTLLNALSAR 55 (258)
T ss_pred eeeEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34467999999999999999999999988864
No 254
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.03 E-value=0.034 Score=52.66 Aligned_cols=30 Identities=23% Similarity=0.275 Sum_probs=26.6
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+-+|++++|+|++|+|||||+..|+..
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 20 SFTLAAGEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 356889999999999999999999988764
No 255
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=94.02 E-value=0.032 Score=53.92 Aligned_cols=32 Identities=19% Similarity=0.365 Sum_probs=28.2
Q ss_pred ecccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 133 DLICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 133 D~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
|.=+.+.+|++.+|+|++|+|||||+..|+..
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGF 48 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 55677899999999999999999999988764
No 256
>PRK05636 replicative DNA helicase; Provisional
Probab=94.02 E-value=0.055 Score=58.91 Aligned_cols=47 Identities=21% Similarity=0.345 Sum_probs=41.3
Q ss_pred ccccccceeeecccc-cccCceeeeecCCCCCchhhHHHHHHHHHhhC
Q psy2896 123 ELLETGIKVIDLICP-FSKGGKVGLFGGAGVGKTVNMMELINNIAKAH 169 (467)
Q Consensus 123 ~~l~TGIr~ID~l~p-igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~ 169 (467)
.-+.||+.-+|-++. +.+|+=+.|-|.||+|||+++.+++.+.+..+
T Consensus 246 ~Gi~TG~~~LD~~t~Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~~~ 293 (505)
T PRK05636 246 TGIPTGFKDLDDLTNGLRGGQMIIVAARPGVGKSTLALDFMRSASIKH 293 (505)
T ss_pred CceecChHHHhhhcCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhC
Confidence 357899999999875 88999999999999999999999999876443
No 257
>PRK08840 replicative DNA helicase; Provisional
Probab=94.02 E-value=0.049 Score=58.67 Aligned_cols=46 Identities=20% Similarity=0.195 Sum_probs=41.4
Q ss_pred ccccccceeeeccc-ccccCceeeeecCCCCCchhhHHHHHHHHHhh
Q psy2896 123 ELLETGIKVIDLIC-PFSKGGKVGLFGGAGVGKTVNMMELINNIAKA 168 (467)
Q Consensus 123 ~~l~TGIr~ID~l~-pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~ 168 (467)
..+.||+.-+|-++ .+-+|+=+.|-|.||+|||+++.+++.|++.+
T Consensus 198 ~gi~TG~~~LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~ 244 (464)
T PRK08840 198 TGVDTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMD 244 (464)
T ss_pred CCcCCCcHHHHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHh
Confidence 35899999999987 59999999999999999999999999998754
No 258
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=94.01 E-value=0.034 Score=53.47 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=26.4
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 31 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 31 LVVKRGETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 56889999999999999999999988764
No 259
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=94.00 E-value=0.034 Score=53.96 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=26.9
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+.+|++++|.|++|+|||||+..|+..
T Consensus 21 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (240)
T PRK09493 21 DLNIDQGEVVVIIGPSGSGKSTLLRCINKL 50 (240)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 356889999999999999999999988864
No 260
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.00 E-value=0.033 Score=53.96 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=29.0
Q ss_pred eeec-ccccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2896 131 VIDL-ICPFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 131 ~ID~-l~pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+++. =+.+.+|+.++|.|++|+|||||+..|+-..
T Consensus 18 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred ceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 4433 4578999999999999999999999888653
No 261
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=94.00 E-value=0.034 Score=54.23 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=26.2
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|++++|.|++|+|||||+..|+-.
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 24 LEVKPGEVVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 56889999999999999999999988754
No 262
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=93.98 E-value=0.032 Score=55.20 Aligned_cols=30 Identities=30% Similarity=0.428 Sum_probs=26.7
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 31 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T PRK10575 31 SLTFPAGKVTGLIGHNGSGKSTLLKMLGRH 60 (265)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 356899999999999999999999988764
No 263
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=93.98 E-value=0.035 Score=53.69 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=26.4
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..|+.-
T Consensus 30 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 30 FSIGEGEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999999988764
No 264
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.97 E-value=0.17 Score=47.88 Aligned_cols=86 Identities=26% Similarity=0.229 Sum_probs=50.7
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEe---cCCchHH----------HHHHHHHHhhcccCCCCCCCc
Q psy2896 140 KGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGV---GERTREG----------NDFYHEMIEAKVVNLDKPEKS 206 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~li---GeR~~ev----------~e~~~~~~~~~~~~~~~~~~~ 206 (467)
+|.-+.|+||||+|||||+.++.... ++.+-+-. .-|+.|+ .||-+-+.....++
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-----~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE------- 70 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD-----KLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLE------- 70 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc-----CeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEE-------
Confidence 78889999999999999999887643 22222211 2233333 36666555545554
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEe
Q psy2896 207 KVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFID 248 (467)
Q Consensus 207 ~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~D 248 (467)
...+.-+ .| .|...-.|.-.++|++|++-+|
T Consensus 71 ~a~~~gn--------yY---GT~~~~ve~~~~~G~~vildId 101 (191)
T COG0194 71 WAEYHGN--------YY---GTSREPVEQALAEGKDVILDID 101 (191)
T ss_pred EEEEcCC--------cc---cCcHHHHHHHHhcCCeEEEEEe
Confidence 5444311 01 1112223444567999999998
No 265
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=93.97 E-value=0.036 Score=52.56 Aligned_cols=30 Identities=33% Similarity=0.505 Sum_probs=26.8
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 21 LHVKKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 568899999999999999999999987643
No 266
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.96 E-value=0.036 Score=54.06 Aligned_cols=35 Identities=23% Similarity=0.351 Sum_probs=28.9
Q ss_pred ceee-ecccccccCceeeeecCCCCCchhhHHHHHH
Q psy2896 129 IKVI-DLICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 129 Ir~I-D~l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
+.++ |.=+.+.+|.-+.|.|+||+|||||+..+.-
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4455 4446799999999999999999999987764
No 267
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=93.95 E-value=0.036 Score=53.81 Aligned_cols=32 Identities=28% Similarity=0.507 Sum_probs=27.8
Q ss_pred cccccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2896 134 LICPFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 134 ~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
.=+.+.+|++++|.|++|+|||||+..|+...
T Consensus 22 ~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 22 VSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33678999999999999999999999888643
No 268
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=93.95 E-value=0.032 Score=55.22 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=26.4
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|++++|+|++|+|||||+..|+-.
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 56 (265)
T PRK10253 28 VEIPDGHFTAIIGPNGCGKSTLLRTLSRL 56 (265)
T ss_pred eEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 66889999999999999999999988764
No 269
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.93 E-value=0.14 Score=58.79 Aligned_cols=108 Identities=15% Similarity=0.058 Sum_probs=58.0
Q ss_pred ceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCC--chHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCH
Q psy2896 142 GKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGER--TREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPS 219 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR--~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~ 219 (467)
+-.+|.|++|+|||+++.-+++.+.+.+. .. .-.||.- +.++.+ . .. .-++.+..++.--
T Consensus 39 HAyLFtGPpGtGKTTLARiLAk~Lnce~~-~~-~~pCg~C~sC~~i~~----g-----~~-------~DviEidAas~~k 100 (944)
T PRK14949 39 HAYLFTGTRGVGKTSLARLFAKGLNCEQG-VT-ATPCGVCSSCVEIAQ----G-----RF-------VDLIEVDAASRTK 100 (944)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhccCccC-CC-CCCCCCchHHHHHhc----C-----CC-------ceEEEeccccccC
Confidence 33589999999999999999987644211 00 0012211 111111 0 00 1122233332112
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHHH-HhHHHHHhcCCCCCC
Q psy2896 220 GNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTL-AGTEVSALLGRMPSA 270 (467)
Q Consensus 220 ~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a~-A~reis~~~ge~p~~ 270 (467)
...++... ....|.-..|+..++|+|.+-++.. |++.+=..+.|||..
T Consensus 101 VDdIReLi---e~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~ 149 (944)
T PRK14949 101 VDDTRELL---DNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEH 149 (944)
T ss_pred HHHHHHHH---HHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCC
Confidence 22233211 1122323358889999999988865 778888888888873
No 270
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.93 E-value=0.036 Score=52.52 Aligned_cols=30 Identities=23% Similarity=0.352 Sum_probs=26.8
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+.+|++++|.|++|+|||||+..|+..
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 20 NLTIKKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred ceEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 356899999999999999999999988764
No 271
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=93.91 E-value=0.035 Score=54.23 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=26.2
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 25 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (252)
T PRK14239 25 SLDFYPNEITALIGPSGSGKSTLLRSINR 53 (252)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 35688999999999999999999998875
No 272
>PRK07261 topology modulation protein; Provisional
Probab=93.89 E-value=0.039 Score=51.19 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=21.0
Q ss_pred ceeeeecCCCCCchhhHHHHHHH
Q psy2896 142 GKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+|+.|+|.+|+|||||+..++..
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999998864
No 273
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=93.87 E-value=0.036 Score=53.87 Aligned_cols=29 Identities=34% Similarity=0.494 Sum_probs=26.4
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 42 ~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 42 FTIEKGEIVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999999998864
No 274
>PF13245 AAA_19: Part of AAA domain
Probab=93.86 E-value=0.06 Score=43.39 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=20.3
Q ss_pred ceeeeecCCCCCchhhHHHHHHHHHh
Q psy2896 142 GKVGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
....|-|+||+|||+++...+....+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~ 36 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLA 36 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34455999999999888888877664
No 275
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=93.85 E-value=0.038 Score=53.10 Aligned_cols=29 Identities=28% Similarity=0.347 Sum_probs=26.2
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 35 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 35 FTLHPGEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 56889999999999999999999988764
No 276
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=93.84 E-value=0.038 Score=55.92 Aligned_cols=29 Identities=28% Similarity=0.442 Sum_probs=26.5
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..|+.-
T Consensus 14 ~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl 42 (302)
T TIGR01188 14 FKVREGEVFGFLGPNGAGKTTTIRMLTTL 42 (302)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999999988864
No 277
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=93.84 E-value=0.037 Score=54.15 Aligned_cols=30 Identities=23% Similarity=0.364 Sum_probs=26.8
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+-+|++++|.|++|+|||||+..|+..
T Consensus 23 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (253)
T TIGR02323 23 SFDLYPGEVLGIVGESGSGKSTLLGCLAGR 52 (253)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 366889999999999999999999988764
No 278
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=93.84 E-value=0.037 Score=56.04 Aligned_cols=29 Identities=28% Similarity=0.464 Sum_probs=26.5
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|++++|.|++|+|||||+..|+-.
T Consensus 25 l~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl 53 (303)
T TIGR01288 25 FTIARGECFGLLGPNGAGKSTIARMLLGM 53 (303)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999999988764
No 279
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=93.83 E-value=0.038 Score=54.69 Aligned_cols=30 Identities=23% Similarity=0.259 Sum_probs=26.8
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+.+|++++|.|++|+|||||+..|+..
T Consensus 32 sl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 32 DLHIPAGQFVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999999999988764
No 280
>PRK06904 replicative DNA helicase; Validated
Probab=93.83 E-value=0.052 Score=58.63 Aligned_cols=60 Identities=22% Similarity=0.130 Sum_probs=47.0
Q ss_pred ccccccceeeeccc-ccccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCch
Q psy2896 123 ELLETGIKVIDLIC-PFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTR 183 (467)
Q Consensus 123 ~~l~TGIr~ID~l~-pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ 183 (467)
.-+.||+.-+|-++ .+.+|+=+.|-|.||+|||+++.+++.|++..+ +..|..+.-|-..
T Consensus 202 ~Gi~TG~~~LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~-g~~Vl~fSlEMs~ 262 (472)
T PRK06904 202 TGVTTGFTDLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMAS-EKPVLVFSLEMPA 262 (472)
T ss_pred CCccCChHHHHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhc-CCeEEEEeccCCH
Confidence 35789999999985 599999999999999999999999999987542 3333334555444
No 281
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.82 E-value=0.039 Score=54.13 Aligned_cols=30 Identities=23% Similarity=0.257 Sum_probs=26.9
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+.+.+|++++|.|++|+|||||+..|+...
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 28 IKILKNSITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 568999999999999999999999887643
No 282
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.82 E-value=0.038 Score=54.12 Aligned_cols=29 Identities=17% Similarity=0.365 Sum_probs=26.3
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..|+.-
T Consensus 25 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (252)
T PRK14256 25 MDFPENSVTAIIGPSGCGKSTVLRSINRM 53 (252)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 46889999999999999999999988764
No 283
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=93.82 E-value=0.038 Score=54.95 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=27.6
Q ss_pred ecccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 133 DLICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 133 D~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 25 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 25 DASFTVPGGSIAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34457999999999999999999999988754
No 284
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=93.81 E-value=0.038 Score=56.74 Aligned_cols=36 Identities=25% Similarity=0.482 Sum_probs=30.6
Q ss_pred ceeeecc-cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 129 IKVIDLI-CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 129 Ir~ID~l-~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
.++++.+ +.+.+|+.++|+|++|+|||||+..|+.-
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl 56 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGV 56 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHcc
Confidence 3466665 47999999999999999999999988764
No 285
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=93.81 E-value=0.038 Score=57.41 Aligned_cols=34 Identities=26% Similarity=0.409 Sum_probs=29.0
Q ss_pred eee-cccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 131 VID-LICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 131 ~ID-~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+++ .=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 17 ~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl 51 (353)
T PRK10851 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGL 51 (353)
T ss_pred EEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 443 3467899999999999999999999998874
No 286
>PRK09183 transposase/IS protein; Provisional
Probab=93.81 E-value=0.054 Score=53.81 Aligned_cols=30 Identities=27% Similarity=0.405 Sum_probs=26.5
Q ss_pred cccCceeeeecCCCCCchhhHHHHHHHHHh
Q psy2896 138 FSKGGKVGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 138 igrGqr~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
+.+|+.+.|+|++|+|||+|+.-++.....
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 788999999999999999999999775443
No 287
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.80 E-value=0.87 Score=48.66 Aligned_cols=47 Identities=15% Similarity=0.119 Sum_probs=31.3
Q ss_pred CceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHH
Q psy2896 141 GGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGND 187 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e 187 (467)
-..+.+.|++|+||||++..+|....+..+.-+.++-++-+.....+
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~ 145 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIE 145 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHH
Confidence 35789999999999999999998754322233444555544333333
No 288
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.79 E-value=0.039 Score=52.33 Aligned_cols=29 Identities=28% Similarity=0.560 Sum_probs=26.3
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|++++|.|++|+|||||+..|+..
T Consensus 29 l~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 29 FKVKAGEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 56889999999999999999999988764
No 289
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=93.79 E-value=0.039 Score=54.02 Aligned_cols=30 Identities=30% Similarity=0.424 Sum_probs=26.8
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (252)
T TIGR03005 20 NFSVAAGEKVALIGPSGSGKSTILRILMTL 49 (252)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999999988764
No 290
>PRK07004 replicative DNA helicase; Provisional
Probab=93.79 E-value=0.094 Score=56.45 Aligned_cols=45 Identities=22% Similarity=0.237 Sum_probs=40.7
Q ss_pred cccccceeeecccc-cccCceeeeecCCCCCchhhHHHHHHHHHhh
Q psy2896 124 LLETGIKVIDLICP-FSKGGKVGLFGGAGVGKTVNMMELINNIAKA 168 (467)
Q Consensus 124 ~l~TGIr~ID~l~p-igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~ 168 (467)
.+.||+.-+|-++. +.+|+=+.|-|.||+|||+++.+++.+.+..
T Consensus 195 gi~TG~~~LD~~t~G~~~g~liviaarpg~GKT~~al~ia~~~a~~ 240 (460)
T PRK07004 195 GTPTGFVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVE 240 (460)
T ss_pred CccCCcHHhcccccCCCCCceEEEEeCCCCCccHHHHHHHHHHHHH
Confidence 57899999999875 9999999999999999999999999987653
No 291
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=93.78 E-value=0.18 Score=56.38 Aligned_cols=107 Identities=19% Similarity=0.166 Sum_probs=56.4
Q ss_pred eeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHH
Q psy2896 144 VGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRL 223 (467)
Q Consensus 144 ~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~ 223 (467)
.++.|++|+|||+++.-+++...+.+. . ----||+- .....+.+.... -++.++.++.--...+
T Consensus 41 yLf~Gp~GvGKTTlAr~lAk~L~c~~~-~-~~~pCg~C-----~~C~~i~~g~~~---------D~ieidaas~~~Vddi 104 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLAKGLNCETG-I-TATPCGEC-----DNCREIEQGRFV---------DLIEIDAASRTKVEDT 104 (647)
T ss_pred EEEECCCCCCHHHHHHHHHHhhhhccC-C-CCCCCCCC-----HHHHHHHcCCCC---------CceeecccccCCHHHH
Confidence 488999999999999999987655311 0 00123322 122222111111 1122222221223333
Q ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeChhHHHH-HhHHHHHhcCCCCC
Q psy2896 224 RVALTGLTIAEGFRDEGKDVLFFIDNIYRYTL-AGTEVSALLGRMPS 269 (467)
Q Consensus 224 ~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a~-A~reis~~~ge~p~ 269 (467)
+... ..+.|--.+|+.-++|+|..-++.. |++.+=..+.|||.
T Consensus 105 R~li---~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~ 148 (647)
T PRK07994 105 RELL---DNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPE 148 (647)
T ss_pred HHHH---HHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCC
Confidence 3221 1222222357888889998877765 67777777777776
No 292
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.78 E-value=0.035 Score=52.71 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=26.7
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+.+-+|+.++|+|++|+|||||+..|+.-.
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 28 GVVKPGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred EEECCCcEEEEECCCCCCHHHHHHHhcccC
Confidence 568899999999999999999999887643
No 293
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=93.78 E-value=0.21 Score=48.64 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=17.9
Q ss_pred ceeeeecCCCCCchhhHHHHH
Q psy2896 142 GKVGLFGGAGVGKTVNMMELI 162 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~ 162 (467)
-.+.|+|+||+|||+++..+.
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcC
Confidence 458999999999999888663
No 294
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=93.78 E-value=0.04 Score=52.85 Aligned_cols=29 Identities=31% Similarity=0.424 Sum_probs=26.5
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 29 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 57 (224)
T TIGR02324 29 LTVNAGECVALSGPSGAGKSTLLKSLYAN 57 (224)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999999988764
No 295
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=93.77 E-value=0.039 Score=54.23 Aligned_cols=30 Identities=23% Similarity=0.480 Sum_probs=26.8
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+.+|+.++|+|++|+|||||+..|+-.
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 52 (254)
T PRK10418 23 SLTLQRGRVLALVGGSGSGKSLTCAAALGI 52 (254)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999999988764
No 296
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=93.76 E-value=0.04 Score=52.87 Aligned_cols=29 Identities=24% Similarity=0.367 Sum_probs=26.0
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+-+|++++|.|++|+|||||+..|+-.
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 21 LTVPKNSVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 56889999999999999999999987754
No 297
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=93.76 E-value=0.041 Score=53.06 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=26.2
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 28 FSLRAGEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 56889999999999999999999988764
No 298
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.75 E-value=0.04 Score=54.63 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=27.8
Q ss_pred ecccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 133 DLICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 133 D~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
|.=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 27 ~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 27 DVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 44467889999999999999999999988764
No 299
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=93.75 E-value=0.041 Score=52.98 Aligned_cols=28 Identities=32% Similarity=0.533 Sum_probs=25.4
Q ss_pred ccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 137 PFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 137 pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
.+.+|+.++|+|++|+|||||+..++..
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4778999999999999999999988864
No 300
>PRK08006 replicative DNA helicase; Provisional
Probab=93.75 E-value=0.059 Score=58.16 Aligned_cols=53 Identities=19% Similarity=0.202 Sum_probs=43.7
Q ss_pred ccccccceeeeccc-ccccCceeeeecCCCCCchhhHHHHHHHHHhh-CCCEEEE
Q psy2896 123 ELLETGIKVIDLIC-PFSKGGKVGLFGGAGVGKTVNMMELINNIAKA-HSGLSVF 175 (467)
Q Consensus 123 ~~l~TGIr~ID~l~-pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~-~~dv~V~ 175 (467)
.-+.||+.-+|-++ .+-+|+=+.|-|.||+|||+++..++.|++.+ +..|.+|
T Consensus 205 ~Gi~TG~~~LD~~~~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~f 259 (471)
T PRK08006 205 TGVNTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIF 259 (471)
T ss_pred CcccCCCHHHHHhhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence 34799999999975 69999999999999999999999999998743 2234444
No 301
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.74 E-value=0.04 Score=52.20 Aligned_cols=28 Identities=21% Similarity=0.394 Sum_probs=25.9
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
+++.+||..+|+|..|+|||||+.|++-
T Consensus 34 FtL~~~QTlaiIG~NGSGKSTLakMlaG 61 (267)
T COG4167 34 FTLREGQTLAIIGENGSGKSTLAKMLAG 61 (267)
T ss_pred EEecCCcEEEEEccCCCcHhHHHHHHhc
Confidence 5689999999999999999999999875
No 302
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=93.71 E-value=0.042 Score=54.18 Aligned_cols=29 Identities=21% Similarity=0.338 Sum_probs=26.5
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|++++|+|++|+|||||+..|+-.
T Consensus 25 ~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 25 LELKPGKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 66899999999999999999999988764
No 303
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.70 E-value=0.041 Score=53.39 Aligned_cols=29 Identities=24% Similarity=0.253 Sum_probs=26.5
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 23 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 23 LYVDPGELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999999988864
No 304
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.70 E-value=0.041 Score=53.69 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=26.4
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|+|++|+|||||+..|+-.
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (249)
T PRK14253 24 LPIPARQVTALIGPSGCGKSTLLRCLNRM 52 (249)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 56899999999999999999999988764
No 305
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=93.69 E-value=0.049 Score=56.44 Aligned_cols=34 Identities=21% Similarity=0.360 Sum_probs=29.9
Q ss_pred eeecccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 131 VIDLICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 131 ~ID~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
.+|.=+.+.+|+.++|+|++|+|||||+..|+-.
T Consensus 14 ~~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl 47 (352)
T PRK11144 14 CLTVNLTLPAQGITAIFGRSGAGKTSLINAISGL 47 (352)
T ss_pred EEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3477778999999999999999999999988764
No 306
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=93.69 E-value=0.041 Score=54.61 Aligned_cols=32 Identities=19% Similarity=0.377 Sum_probs=27.8
Q ss_pred ecccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 133 DLICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 133 D~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
|.=+.+.+|++++|.|++|+|||||+..|+..
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (269)
T PRK11831 25 NISLTVPRGKITAIMGPSGIGKTTLLRLIGGQ 56 (269)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34467999999999999999999999988764
No 307
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=93.67 E-value=0.041 Score=54.24 Aligned_cols=29 Identities=24% Similarity=0.425 Sum_probs=26.4
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 51 (258)
T PRK13548 23 LTLRPGEVVAILGPNGAGKSTLLRALSGE 51 (258)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56889999999999999999999988764
No 308
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.67 E-value=0.041 Score=55.23 Aligned_cols=30 Identities=23% Similarity=0.269 Sum_probs=26.9
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 32 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 32 LTFKKNKVTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 568999999999999999999999887643
No 309
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=93.66 E-value=0.042 Score=53.61 Aligned_cols=30 Identities=23% Similarity=0.273 Sum_probs=26.7
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (247)
T TIGR00972 21 NLDIPKNQVTALIGPSGCGKSTLLRSLNRM 50 (247)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 356889999999999999999999988754
No 310
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.66 E-value=0.044 Score=50.48 Aligned_cols=29 Identities=28% Similarity=0.433 Sum_probs=26.3
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 23 ~~i~~G~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 23 LTIKPGEKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 56889999999999999999999988764
No 311
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.65 E-value=0.043 Score=51.75 Aligned_cols=29 Identities=21% Similarity=0.333 Sum_probs=26.5
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|++++|.|++|+|||||+..|+..
T Consensus 30 ~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 30 GKAKPGELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999999988764
No 312
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.65 E-value=0.042 Score=53.65 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=26.2
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 25 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 53 (252)
T PRK14272 25 LDVQRGTVNALIGPSGCGKTTFLRAINRM 53 (252)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46889999999999999999999988764
No 313
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.65 E-value=0.043 Score=53.66 Aligned_cols=30 Identities=17% Similarity=0.282 Sum_probs=26.6
Q ss_pred cccccccCceeeeecCCCCCchhhHHHHHH
Q psy2896 134 LICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 134 ~l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 22 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 22 ISMEIEEKSVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred eeEEEeCCCEEEEECCCCCCHHHHHHHHhh
Confidence 345689999999999999999999999874
No 314
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.64 E-value=0.043 Score=53.69 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=26.2
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 25 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (251)
T PRK14270 25 LPIYENKITALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 55889999999999999999999988753
No 315
>PRK06321 replicative DNA helicase; Provisional
Probab=93.63 E-value=0.061 Score=58.06 Aligned_cols=46 Identities=20% Similarity=0.192 Sum_probs=41.1
Q ss_pred ccccccceeeecccc-cccCceeeeecCCCCCchhhHHHHHHHHHhh
Q psy2896 123 ELLETGIKVIDLICP-FSKGGKVGLFGGAGVGKTVNMMELINNIAKA 168 (467)
Q Consensus 123 ~~l~TGIr~ID~l~p-igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~ 168 (467)
.-+.||+.-+|-++. +-+|+=+.|-|.||+|||+++.+++.+++..
T Consensus 207 ~Gi~tG~~~LD~~t~Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~ 253 (472)
T PRK06321 207 SGIPTHFIDLDKMINGFSPSNLMILAARPAMGKTALALNIAENFCFQ 253 (472)
T ss_pred CccccCcHHHHHHhcCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHh
Confidence 357899999999985 8999999999999999999999999997643
No 316
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.63 E-value=0.25 Score=50.36 Aligned_cols=29 Identities=34% Similarity=0.495 Sum_probs=24.8
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHHHhh
Q psy2896 140 KGGKVGLFGGAGVGKTVNMMELINNIAKA 168 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~~~~ 168 (467)
.+.-+.|+|++|+|||.|+.-|++...+.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~ 183 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKK 183 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45668899999999999999999987654
No 317
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.62 E-value=0.044 Score=51.93 Aligned_cols=32 Identities=28% Similarity=0.291 Sum_probs=27.7
Q ss_pred ecccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 133 DLICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 133 D~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 19 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred cceEEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34456889999999999999999999988764
No 318
>PRK06749 replicative DNA helicase; Provisional
Probab=93.62 E-value=0.07 Score=56.88 Aligned_cols=53 Identities=23% Similarity=0.285 Sum_probs=44.4
Q ss_pred ccccccceeeeccc-ccccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEE
Q psy2896 123 ELLETGIKVIDLIC-PFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVF 175 (467)
Q Consensus 123 ~~l~TGIr~ID~l~-pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~ 175 (467)
.-+.||+..+|-++ .+.+|+=+.|=|.||+|||+++.+++.+.++++..+.+|
T Consensus 167 ~Gi~TG~~~LD~~t~Gl~~G~LiiIaarPgmGKTafal~ia~~~a~~g~~v~~f 220 (428)
T PRK06749 167 TGIETGYTSLNKMTCGLQEGDFVVLGARPSMGKTAFALNVGLHAAKSGAAVGLF 220 (428)
T ss_pred CCccCCcHHHHHHhCCCCCCcEEEEEeCCCCCchHHHHHHHHHHHhcCCCEEEE
Confidence 45889999999975 499999999999999999999999999987653345455
No 319
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=93.62 E-value=0.043 Score=57.00 Aligned_cols=33 Identities=36% Similarity=0.500 Sum_probs=28.1
Q ss_pred eee-cccccccCceeeeecCCCCCchhhHHHHHH
Q psy2896 131 VID-LICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 131 ~ID-~l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
+++ .=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus 21 ~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaG 54 (351)
T PRK11432 21 VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAG 54 (351)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHC
Confidence 344 446789999999999999999999998875
No 320
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=93.62 E-value=0.044 Score=54.22 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=26.7
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+.+|++++|.|++|+|||||+..|+.-
T Consensus 30 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 59 (264)
T PRK14243 30 WLDIPKNQITAFIGPSGCGKSTILRCFNRL 59 (264)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 366889999999999999999999988853
No 321
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.61 E-value=0.063 Score=53.13 Aligned_cols=30 Identities=27% Similarity=0.433 Sum_probs=26.5
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+.+|++++|.|++|+|||||+..|+-.
T Consensus 28 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (261)
T PRK14263 28 HVPIRKNEITGFIGPSGCGKSTVLRSLNRM 57 (261)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcc
Confidence 456999999999999999999999987653
No 322
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=93.60 E-value=0.043 Score=57.09 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=27.6
Q ss_pred cccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 134 LICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 134 ~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
.=+.+.+|+.++|+|++|+|||||+..|+--
T Consensus 23 vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl 53 (356)
T PRK11650 23 IDLDVADGEFIVLVGPSGCGKSTLLRMVAGL 53 (356)
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHHCC
Confidence 4467999999999999999999999988764
No 323
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.60 E-value=0.044 Score=54.45 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=26.3
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 30 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (271)
T PRK13632 30 FEINEGEYVAILGHNGSGKSTISKILTGL 58 (271)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999999988764
No 324
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=93.59 E-value=0.044 Score=56.31 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=29.1
Q ss_pred eeeec-ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 130 KVIDL-ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 130 r~ID~-l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
++++. =+.+.+|+.++|+|++|+|||||+..|+.-
T Consensus 29 ~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl 64 (327)
T PRK11308 29 KALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMI 64 (327)
T ss_pred eEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 44444 456899999999999999999999988764
No 325
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.58 E-value=0.044 Score=54.45 Aligned_cols=30 Identities=17% Similarity=0.164 Sum_probs=26.7
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 44 s~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl 73 (269)
T cd03294 44 SLDVREGEIFVIMGLSGSGKSTLLRCINRL 73 (269)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999999999988764
No 326
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=93.58 E-value=0.045 Score=53.77 Aligned_cols=31 Identities=29% Similarity=0.537 Sum_probs=27.0
Q ss_pred ecccccccCceeeeecCCCCCchhhHHHHHH
Q psy2896 133 DLICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 133 D~l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
|.=+.+.+|.++||+|..|+|||||+..|+-
T Consensus 45 disf~i~~Ge~vGiiG~NGaGKSTLlkliaG 75 (249)
T COG1134 45 DISFEIYKGERVGIIGHNGAGKSTLLKLIAG 75 (249)
T ss_pred CceEEEeCCCEEEEECCCCCcHHHHHHHHhC
Confidence 3346699999999999999999999998775
No 327
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.57 E-value=0.043 Score=54.69 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=26.3
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 28 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 56 (280)
T PRK13649 28 LTIEDGSYTAFIGHTGSGKSTIMQLLNGL 56 (280)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 56889999999999999999999988764
No 328
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.57 E-value=0.046 Score=52.83 Aligned_cols=32 Identities=28% Similarity=0.430 Sum_probs=27.6
Q ss_pred ecccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 133 DLICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 133 D~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 19 ~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 19 DVSFTIPAGKKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 33456889999999999999999999988764
No 329
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.56 E-value=0.034 Score=55.86 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=27.0
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 27 sl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl 56 (287)
T PRK13641 27 SFELEEGSFVALVGHTGSGKSTLMQHFNAL 56 (287)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 366899999999999999999999988764
No 330
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=93.56 E-value=0.045 Score=53.97 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=26.4
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 34 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 34 LDIAKNQVTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 56889999999999999999999988764
No 331
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=93.54 E-value=0.046 Score=53.14 Aligned_cols=29 Identities=24% Similarity=0.360 Sum_probs=26.2
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|++++|.|++|+|||||+.-|+..
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (237)
T TIGR00968 21 LEVPTGSLVALLGPSGSGKSTLLRIIAGL 49 (237)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999999988764
No 332
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=93.54 E-value=0.045 Score=56.85 Aligned_cols=31 Identities=29% Similarity=0.356 Sum_probs=27.6
Q ss_pred cccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 134 LICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 134 ~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
.=+.+..|+.++|+|++|+|||||+..|+-.
T Consensus 23 vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl 53 (353)
T TIGR03265 23 ISLSVKKGEFVCLLGPSGCGKTTLLRIIAGL 53 (353)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4467889999999999999999999988864
No 333
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=93.54 E-value=0.046 Score=54.12 Aligned_cols=32 Identities=28% Similarity=0.480 Sum_probs=27.6
Q ss_pred ecccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 133 DLICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 133 D~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 29 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T TIGR02769 29 NVSLSIEEGETVGLLGRSGCGKSTLARLLLGL 60 (265)
T ss_pred CceeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 33466899999999999999999999988764
No 334
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=93.53 E-value=0.047 Score=54.13 Aligned_cols=29 Identities=28% Similarity=0.394 Sum_probs=26.4
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|++++|.|++|+|||||+..|+..
T Consensus 41 l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 69 (267)
T PRK14237 41 MQFEKNKITALIGPSGSGKSTYLRSLNRM 69 (267)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 56889999999999999999999988764
No 335
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=93.53 E-value=0.041 Score=56.59 Aligned_cols=36 Identities=19% Similarity=0.493 Sum_probs=30.0
Q ss_pred ceeeecc-cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 129 IKVIDLI-CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 129 Ir~ID~l-~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
++++|.+ +.+.+|+.++|+|++|+|||||+..|+.-
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl 65 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGL 65 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcC
Confidence 3455554 56999999999999999999999988764
No 336
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=93.52 E-value=0.047 Score=54.30 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=26.7
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|++++|.|++|+|||||+..|+..
T Consensus 45 l~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl 73 (271)
T PRK14238 45 LDIHENEVTAIIGPSGCGKSTYIKTLNRM 73 (271)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999999999988864
No 337
>PRK07773 replicative DNA helicase; Validated
Probab=93.52 E-value=0.1 Score=60.55 Aligned_cols=47 Identities=21% Similarity=0.276 Sum_probs=42.3
Q ss_pred ccccccceeeecccc-cccCceeeeecCCCCCchhhHHHHHHHHHhhC
Q psy2896 123 ELLETGIKVIDLICP-FSKGGKVGLFGGAGVGKTVNMMELINNIAKAH 169 (467)
Q Consensus 123 ~~l~TGIr~ID~l~p-igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~ 169 (467)
..+.||+..+|.++. +-+|+-+.|-|.||+|||+++.+++.|.+.++
T Consensus 198 ~Gi~TG~~~LD~l~~Gl~~G~livIagrPg~GKT~fal~ia~~~a~~~ 245 (886)
T PRK07773 198 RGVPTGFTELDAMTNGLHPGQLIIVAARPSMGKTTFGLDFARNCAIRH 245 (886)
T ss_pred CCccCChhHhccccCCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHhc
Confidence 468999999999874 88999999999999999999999999987653
No 338
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=93.52 E-value=0.046 Score=56.41 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=26.8
Q ss_pred cccccccCceeeeecCCCCCchhhHHHHHH
Q psy2896 134 LICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 134 ~l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
.=+.+..|..+.|+||+|||||||+.+||-
T Consensus 22 i~l~i~~Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 22 VNLDIEDGEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 445699999999999999999999998874
No 339
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.51 E-value=0.046 Score=53.86 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=27.1
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 27 sl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 56 (259)
T PRK14260 27 SMDIYRNKVTAIIGPSGCGKSTFIKTLNRI 56 (259)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 356889999999999999999999998874
No 340
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.50 E-value=0.047 Score=53.45 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=26.3
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+..+|.|++|+|||||+..|+..
T Consensus 25 ~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14249 25 MDFPERQITAIIGPSGCGKSTLLRALNRM 53 (251)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46889999999999999999999988764
No 341
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=93.50 E-value=0.047 Score=52.56 Aligned_cols=31 Identities=19% Similarity=0.371 Sum_probs=27.3
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
-+.+.+|++++|.|++|+|||||+..|+...
T Consensus 27 sl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 27 SLHVESGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 4468999999999999999999999888654
No 342
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.50 E-value=0.043 Score=54.46 Aligned_cols=29 Identities=34% Similarity=0.470 Sum_probs=26.1
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (271)
T PRK13638 22 LDFSLSPVTGLVGANGCGKSTLFMNLSGL 50 (271)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 56889999999999999999999988754
No 343
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.50 E-value=0.047 Score=53.38 Aligned_cols=30 Identities=23% Similarity=0.271 Sum_probs=26.7
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 24 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14251 24 SLDFEEKELTALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 356889999999999999999999988864
No 344
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.50 E-value=0.042 Score=54.61 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=27.3
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+++.+|.-++|+||.|+|||||+..|++-.
T Consensus 23 ~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 23 FSIPKGEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred EEecCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 569999999999999999999999988754
No 345
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=93.49 E-value=0.046 Score=53.47 Aligned_cols=29 Identities=28% Similarity=0.261 Sum_probs=26.4
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 26 LEVREQEIVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred eEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 56889999999999999999999988764
No 346
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.49 E-value=0.048 Score=51.19 Aligned_cols=28 Identities=25% Similarity=0.431 Sum_probs=24.2
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
+-+-+|+.++|+|++|+|||||+.-++-
T Consensus 31 L~v~~Ge~vaiVG~SGSGKSTLl~vlAG 58 (228)
T COG4181 31 LVVKRGETVAIVGPSGSGKSTLLAVLAG 58 (228)
T ss_pred EEecCCceEEEEcCCCCcHHhHHHHHhc
Confidence 3478999999999999999999986553
No 347
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=93.48 E-value=0.043 Score=53.19 Aligned_cols=29 Identities=31% Similarity=0.453 Sum_probs=26.1
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 26 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (237)
T PRK11614 26 LHINQGEIVTLIGANGAGKTTLLGTLCGD 54 (237)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 56899999999999999999999988753
No 348
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.47 E-value=0.051 Score=54.12 Aligned_cols=47 Identities=26% Similarity=0.402 Sum_probs=36.0
Q ss_pred ceeeec-ccccccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEE
Q psy2896 129 IKVIDL-ICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFT 176 (467)
Q Consensus 129 Ir~ID~-l~pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~ 176 (467)
++++|. =+.|.+|...|++|.||+|||||...+++=. +-..+-++|-
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~-~pt~G~i~f~ 73 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLE-EPTSGEILFE 73 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCc-CCCCceEEEc
Confidence 577775 4679999999999999999999999888743 2223455553
No 349
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=93.47 E-value=0.046 Score=53.89 Aligned_cols=29 Identities=28% Similarity=0.397 Sum_probs=26.0
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 25 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 53 (262)
T PRK09984 25 LNIHHGEMVALLGPSGSGKSTLLRHLSGL 53 (262)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 45889999999999999999999988764
No 350
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.47 E-value=0.96 Score=45.51 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=22.7
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHHHh
Q psy2896 140 KGGKVGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
.|-.+.|.|+||||||+++..+++...+
T Consensus 57 ~~~~vll~G~pGTGKT~lA~~ia~~l~~ 84 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVALRMAQILHR 84 (284)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3456899999999999999888876543
No 351
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=93.45 E-value=0.069 Score=48.61 Aligned_cols=34 Identities=32% Similarity=0.443 Sum_probs=21.6
Q ss_pred eeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHH
Q psy2896 143 KVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREG 185 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev 185 (467)
|+.|.|++++|||||+..++.. ++.++ .|-.+++
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~------g~~~v---~E~ar~~ 34 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR------GYPVV---PEYAREI 34 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH------T-EEE-----TTHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc------CCeEE---eecHHHH
Confidence 7899999999999999998864 33332 5656654
No 352
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=93.44 E-value=0.048 Score=53.61 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=26.3
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|++++|+|++|+|||||+..|+..
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 54 (257)
T PRK10619 26 LQANAGDVISIIGSSGSGKSTFLRCINFL 54 (257)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56889999999999999999999988764
No 353
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.44 E-value=0.05 Score=52.02 Aligned_cols=29 Identities=31% Similarity=0.564 Sum_probs=26.3
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 25 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 25 FSIKPGEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 56889999999999999999999988764
No 354
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=93.44 E-value=0.15 Score=53.33 Aligned_cols=24 Identities=25% Similarity=0.549 Sum_probs=20.0
Q ss_pred ceeeeecCCCCCchhhHHHHHHHH
Q psy2896 142 GKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
--+||+||+|+|||.++..++..+
T Consensus 149 lgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 149 LILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHc
Confidence 347899999999999988887754
No 355
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=93.43 E-value=0.044 Score=53.53 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=25.6
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 55 (252)
T CHL00131 28 LSINKGEIHAIMGPNGSGKSTLSKVIAG 55 (252)
T ss_pred eEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 5688999999999999999999998775
No 356
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.42 E-value=0.05 Score=53.12 Aligned_cols=32 Identities=22% Similarity=0.305 Sum_probs=27.4
Q ss_pred ecccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 133 DLICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 133 D~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 21 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (250)
T PRK14266 21 NVNLDIPKNSVTALIGPSGCGKSTFIRTLNRM 52 (250)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 33456889999999999999999999988753
No 357
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.42 E-value=0.049 Score=53.61 Aligned_cols=30 Identities=23% Similarity=0.272 Sum_probs=26.7
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 32 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 61 (258)
T PRK14268 32 SMQIPKNSVTALIGPSGCGKSTFIRCLNRM 61 (258)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999999999988753
No 358
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.42 E-value=0.05 Score=53.21 Aligned_cols=30 Identities=17% Similarity=0.153 Sum_probs=26.8
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 25 s~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~ 54 (251)
T PRK14244 25 NLDIYKREVTAFIGPSGCGKSTFLRCFNRM 54 (251)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 357899999999999999999999988764
No 359
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.41 E-value=0.052 Score=53.39 Aligned_cols=28 Identities=29% Similarity=0.493 Sum_probs=25.0
Q ss_pred ccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 137 PFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 137 pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
.+.+|++++|+|++|+|||||+..|+..
T Consensus 21 ~i~~Ge~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CcCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999988764
No 360
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.40 E-value=0.049 Score=54.30 Aligned_cols=29 Identities=14% Similarity=0.204 Sum_probs=26.1
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
=+.+.+|++++|+|++|+|||||+..|+.
T Consensus 40 s~~i~~Ge~~~IiG~nGsGKSTLl~~l~G 68 (274)
T PRK14265 40 HLKIPAKKIIAFIGPSGCGKSTLLRCFNR 68 (274)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35689999999999999999999998874
No 361
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=93.39 E-value=0.049 Score=54.10 Aligned_cols=31 Identities=26% Similarity=0.408 Sum_probs=27.0
Q ss_pred cccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 134 LICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 134 ~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
.=+.+.+|++++|.|++|+|||||+..|+-.
T Consensus 31 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 61 (268)
T PRK10419 31 VSLSLKSGETVALLGRSGCGKSTLARLLVGL 61 (268)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3366899999999999999999999988753
No 362
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.38 E-value=0.23 Score=55.41 Aligned_cols=26 Identities=27% Similarity=0.201 Sum_probs=22.6
Q ss_pred ceeeeecCCCCCchhhHHHHHHHHHh
Q psy2896 142 GKVGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
+-.++.|++|+|||+++..+++...+
T Consensus 39 HA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 39 HAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 44689999999999999999998755
No 363
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.38 E-value=0.05 Score=51.18 Aligned_cols=28 Identities=29% Similarity=0.340 Sum_probs=25.5
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
+.+-+|+.++|.|++|+|||||+..|+-
T Consensus 28 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 28 GYVKPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4688999999999999999999998874
No 364
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.38 E-value=0.048 Score=54.36 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=27.7
Q ss_pred ecccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 133 DLICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 133 D~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
|.=+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 20 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 51 (275)
T PRK13639 20 GINFKAEKGEMVALLGPNGAGKSTLFLHFNGI 51 (275)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 33467899999999999999999999988754
No 365
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=93.36 E-value=0.051 Score=58.71 Aligned_cols=38 Identities=21% Similarity=0.372 Sum_probs=31.3
Q ss_pred eeecc-cccccCceeeeecCCCCCchhhHHHHHHHHHhh
Q psy2896 131 VIDLI-CPFSKGGKVGLFGGAGVGKTVNMMELINNIAKA 168 (467)
Q Consensus 131 ~ID~l-~pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~ 168 (467)
+++.+ +++.+|+|+.|.|.+|+|||||++-+.++..-+
T Consensus 353 ~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~ 391 (573)
T COG4987 353 ALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ 391 (573)
T ss_pred hhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC
Confidence 44444 569999999999999999999999998865443
No 366
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.36 E-value=0.051 Score=53.23 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=25.9
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 27 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 27 ISIPKNRVTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred EEECCCcEEEEECCCCCCHHHHHHHHhc
Confidence 5689999999999999999999998875
No 367
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=93.35 E-value=0.1 Score=52.86 Aligned_cols=40 Identities=20% Similarity=0.299 Sum_probs=32.0
Q ss_pred ccccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEE
Q psy2896 137 PFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFT 176 (467)
Q Consensus 137 pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~ 176 (467)
..+++..++|.|++|+|||||+..++....+.+..+.|+.
T Consensus 30 ~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~ 69 (300)
T TIGR00750 30 YTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIA 69 (300)
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4778999999999999999999999987665443444443
No 368
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=93.35 E-value=0.05 Score=56.00 Aligned_cols=35 Identities=26% Similarity=0.486 Sum_probs=29.4
Q ss_pred eeee-cccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 130 KVID-LICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 130 r~ID-~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
++++ .=+.+.+|+.++|+|++|+|||||+..|+.-
T Consensus 35 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl 70 (331)
T PRK15079 35 KAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGL 70 (331)
T ss_pred EEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4553 4466999999999999999999999988764
No 369
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=93.34 E-value=0.054 Score=51.01 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=26.4
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 20 SFTLNAGEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 455889999999999999999999987764
No 370
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.34 E-value=0.049 Score=51.75 Aligned_cols=29 Identities=34% Similarity=0.422 Sum_probs=25.2
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+.+| +++|.|++|+|||||+..|+..
T Consensus 20 s~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 20 SLTLGPG-MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred eEEEcCC-cEEEECCCCCCHHHHHHHHhCC
Confidence 3557889 9999999999999999988764
No 371
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.33 E-value=0.052 Score=54.20 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=28.1
Q ss_pred ecccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 133 DLICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 133 D~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
|.=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 39 ~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 70 (276)
T PRK14271 39 QVSMGFPARAVTSLMGPTGSGKTTFLRTLNRM 70 (276)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 44467899999999999999999999998864
No 372
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.33 E-value=0.053 Score=52.96 Aligned_cols=30 Identities=17% Similarity=0.223 Sum_probs=26.8
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 22 NMQIEQNKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 366889999999999999999999988763
No 373
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=93.33 E-value=0.051 Score=54.29 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=26.3
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 22 l~i~~Ge~~~l~G~nGsGKSTLl~~laG~ 50 (272)
T PRK13547 22 LRIEPGRVTALLGRNGAGKSTLLKALAGD 50 (272)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999999988764
No 374
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=93.32 E-value=0.05 Score=57.03 Aligned_cols=34 Identities=29% Similarity=0.384 Sum_probs=28.9
Q ss_pred eee-cccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 131 VID-LICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 131 ~ID-~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+++ .=+.+.+|+.++|+|++|+|||||+..|+--
T Consensus 29 ~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl 63 (375)
T PRK09452 29 VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGF 63 (375)
T ss_pred EEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 443 4477999999999999999999999988853
No 375
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.30 E-value=0.043 Score=53.07 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=27.0
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+.+.+|++++|.|++|+|||||+..|+...
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~ 50 (232)
T cd03300 21 LDIKEGEFFTLLGPSGCGKTTLLRLIAGFE 50 (232)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 568899999999999999999999887653
No 376
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.29 E-value=0.055 Score=52.43 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=22.5
Q ss_pred cccccCceeeeecCCCCCchhhHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMME 160 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~ 160 (467)
+.+.+|+.++|.|++|+|||||+..
T Consensus 16 l~i~~Ge~~~l~G~sGsGKSTL~~~ 40 (226)
T cd03270 16 VDIPRNKLVVITGVSGSGKSSLAFD 40 (226)
T ss_pred eecCCCcEEEEEcCCCCCHHHHHHH
Confidence 5699999999999999999999743
No 377
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=93.29 E-value=0.052 Score=53.96 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=27.1
Q ss_pred cccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 134 LICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 134 ~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
.=+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 44 vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl 74 (272)
T PRK14236 44 ISMRIPKNRVTAFIGPSGCGKSTLLRCFNRM 74 (272)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3366889999999999999999999988753
No 378
>CHL00181 cbbX CbbX; Provisional
Probab=93.29 E-value=0.96 Score=45.65 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=24.9
Q ss_pred ccccCceeeeecCCCCCchhhHHHHHHHHH
Q psy2896 137 PFSKGGKVGLFGGAGVGKTVNMMELINNIA 166 (467)
Q Consensus 137 pigrGqr~~I~g~~g~GKt~L~~~i~~~~~ 166 (467)
+..+|-.+.++|+||||||+++..++....
T Consensus 55 ~~~~~~~ill~G~pGtGKT~lAr~la~~~~ 84 (287)
T CHL00181 55 SSNPGLHMSFTGSPGTGKTTVALKMADILY 84 (287)
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 344577899999999999999999988643
No 379
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=93.28 E-value=0.055 Score=53.65 Aligned_cols=31 Identities=16% Similarity=0.128 Sum_probs=27.2
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
=+.+-+|+.++|.|++|+|||||+..|+-..
T Consensus 39 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 39 DLDIPEKTVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3568899999999999999999999888643
No 380
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=93.25 E-value=0.054 Score=51.63 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=28.9
Q ss_pred ecccccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2896 133 DLICPFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 133 D~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
|.=+.+.+|++++|.|++|+|||||+..|+...
T Consensus 16 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 16 EFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred eeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 555778999999999999999999999888643
No 381
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.24 E-value=0.053 Score=54.98 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=27.3
Q ss_pred cccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 134 LICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 134 ~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
.=+.+.+|+.++|+|++|+|||||+..|+-.
T Consensus 64 is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl 94 (305)
T PRK14264 64 VSMDIPEKSVTALIGPSGCGKSTFLRCLNRM 94 (305)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3456899999999999999999999988754
No 382
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.24 E-value=0.052 Score=54.56 Aligned_cols=32 Identities=28% Similarity=0.376 Sum_probs=27.8
Q ss_pred ecccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 133 DLICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 133 D~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
|.=+.+.+|++++|.|++|+|||||+..|+-.
T Consensus 24 ~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl 55 (288)
T PRK13643 24 DIDLEVKKGSYTALIGHTGSGKSTLLQHLNGL 55 (288)
T ss_pred eeEEEEcCCCEEEEECCCCChHHHHHHHHhcC
Confidence 44566999999999999999999999988754
No 383
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.23 E-value=0.59 Score=44.15 Aligned_cols=29 Identities=24% Similarity=0.244 Sum_probs=24.8
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHHHHh
Q psy2896 139 SKGGKVGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
-+|..+.|.|.+|+|||||+..++.....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~ 50 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHE 50 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 36788999999999999999999886543
No 384
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=93.22 E-value=0.057 Score=51.91 Aligned_cols=32 Identities=28% Similarity=0.406 Sum_probs=28.4
Q ss_pred ecccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 133 DLICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 133 D~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
|.-+...+|+-+||+|+.|+||||++.||+--
T Consensus 20 dVSF~ae~Gei~GlLG~NGAGKTT~LRmiatl 51 (245)
T COG4555 20 DVSFEAEEGEITGLLGENGAGKTTLLRMIATL 51 (245)
T ss_pred heeEEeccceEEEEEcCCCCCchhHHHHHHHh
Confidence 55567899999999999999999999998864
No 385
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=93.20 E-value=1.3 Score=40.94 Aligned_cols=97 Identities=19% Similarity=0.206 Sum_probs=62.5
Q ss_pred eeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEe-cC-CchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCC----C
Q psy2896 143 KVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGV-GE-RTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQM----N 216 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~li-Ge-R~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~----d 216 (467)
-+.|+.++|.|||+++.-++...+..+..|.++=++ |. ...|.. +.+.+.+ + .++-+... .
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~-~l~~l~~---v---------~~~~~g~~~~~~~ 70 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELK-ALERLPN---I---------EIHRMGRGFFWTT 70 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHH-HHHhCCC---c---------EEEECCCCCccCC
Confidence 578899999999999999998776655555554333 21 233432 4444421 1 11111111 1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhH
Q psy2896 217 EPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYR 252 (467)
Q Consensus 217 ~~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr 252 (467)
+.+.+....+..+...|......|..-|+|+|.+.-
T Consensus 71 ~~~~~~~~~a~~~~~~a~~~~~~~~~dLlVLDEi~~ 106 (159)
T cd00561 71 ENDEEDIAAAAEGWAFAKEAIASGEYDLVILDEINY 106 (159)
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCCEEEEechHh
Confidence 335566777888888888888888888899998873
No 386
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=93.19 E-value=0.059 Score=51.08 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=26.5
Q ss_pred ecccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 133 DLICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 133 D~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.=+++..|+++.|.|+||+|||||+.-|+--
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhc
Confidence 33356889999999999999999999876653
No 387
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.19 E-value=0.25 Score=53.91 Aligned_cols=26 Identities=27% Similarity=0.169 Sum_probs=22.1
Q ss_pred ceeeeecCCCCCchhhHHHHHHHHHh
Q psy2896 142 GKVGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
+-.++.|++|+|||+++.-+++...+
T Consensus 39 ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 39 HAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred eeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 44689999999999999999987654
No 388
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.18 E-value=0.056 Score=54.28 Aligned_cols=31 Identities=13% Similarity=0.197 Sum_probs=27.3
Q ss_pred ecccccccCceeeeecCCCCCchhhHHHHHH
Q psy2896 133 DLICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 133 D~l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
|.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus 57 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~G 87 (286)
T PRK14275 57 KVNADILSKYVTAIIGPSGCGKSTFLRAINR 87 (286)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3445799999999999999999999998875
No 389
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.17 E-value=0.055 Score=48.63 Aligned_cols=29 Identities=24% Similarity=0.521 Sum_probs=25.9
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+-+|+.++|.|++|+|||||+..++..
T Consensus 21 ~~~~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 21 LTINPGDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 45789999999999999999999988764
No 390
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=93.17 E-value=0.055 Score=53.12 Aligned_cols=29 Identities=21% Similarity=0.309 Sum_probs=26.2
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 23 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (255)
T PRK11231 23 LSLPTGKITALIGPNGCGKSTLLKCFARL 51 (255)
T ss_pred eEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 56889999999999999999999988764
No 391
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=93.17 E-value=0.054 Score=55.56 Aligned_cols=36 Identities=28% Similarity=0.595 Sum_probs=30.3
Q ss_pred ceeeecc-cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 129 IKVIDLI-CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 129 Ir~ID~l-~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
.+++|.+ +.+.+|+.++|+|++|+|||||+..|+.-
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gl 56 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGL 56 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 3455554 67999999999999999999999988864
No 392
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.16 E-value=0.53 Score=53.58 Aligned_cols=31 Identities=32% Similarity=0.560 Sum_probs=26.3
Q ss_pred cccCceeeeecCCCCCchhhHHHHHHHHHhh
Q psy2896 138 FSKGGKVGLFGGAGVGKTVNMMELINNIAKA 168 (467)
Q Consensus 138 igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~ 168 (467)
+.+|+.++++|+.|+||||++..|+......
T Consensus 182 ~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~ 212 (767)
T PRK14723 182 LAQGGVLALVGPTGVGKTTTTAKLAARCVAR 212 (767)
T ss_pred cCCCeEEEEECCCCCcHHHHHHHHHhhHHHH
Confidence 4468999999999999999999999865433
No 393
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=93.15 E-value=0.055 Score=54.99 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=27.2
Q ss_pred cccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 134 LICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 134 ~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
.=+.+.+|+.++|.|++|+|||||+..|+--
T Consensus 26 vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl 56 (305)
T PRK13651 26 VSVEINQGEFIAIIGQTGSGKTTFIEHLNAL 56 (305)
T ss_pred eEEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3466999999999999999999999988754
No 394
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.14 E-value=0.055 Score=54.15 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=26.4
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 28 l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~ 56 (282)
T PRK13640 28 FSIPRGSWTALIGHNGSGKSTISKLINGL 56 (282)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcc
Confidence 46889999999999999999999988764
No 395
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=93.14 E-value=0.87 Score=47.95 Aligned_cols=41 Identities=27% Similarity=0.434 Sum_probs=33.1
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEE
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFT 176 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~ 176 (467)
|+....||..+|=|.||+|||+++.++.... +.+.++.++.
T Consensus 4 FF~~~~G~TLLIKG~PGTGKTtfaLelL~~l-~~~~~v~YIS 44 (484)
T PF07088_consen 4 FFTQEPGQTLLIKGEPGTGKTTFALELLNSL-KDHGNVMYIS 44 (484)
T ss_pred hhcCCCCcEEEEecCCCCCceeeehhhHHHH-hccCCeEEEE
Confidence 5667889999999999999999999999865 4445555544
No 396
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=93.13 E-value=0.086 Score=51.64 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=22.0
Q ss_pred eeeecCCCCCchhhHHHHHHHHHh
Q psy2896 144 VGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 144 ~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
++|+|+||+|||||+.+|++..+.
T Consensus 140 tLiigpP~~GKTTlLRdiaR~~s~ 163 (308)
T COG3854 140 TLIIGPPQVGKTTLLRDIARLLSD 163 (308)
T ss_pred eEEecCCCCChHHHHHHHHHHhhc
Confidence 789999999999999999998754
No 397
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=93.12 E-value=0.059 Score=53.44 Aligned_cols=32 Identities=22% Similarity=0.338 Sum_probs=27.7
Q ss_pred ecccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 133 DLICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 133 D~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
|.=+.+.+|++++|.|++|+|||||+..|+..
T Consensus 31 ~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl 62 (267)
T PRK15112 31 PLSFTLREGQTLAIIGENGSGKSTLAKMLAGM 62 (267)
T ss_pred eeeEEecCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 33466899999999999999999999988764
No 398
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.11 E-value=0.48 Score=50.09 Aligned_cols=28 Identities=14% Similarity=0.137 Sum_probs=24.0
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHHHh
Q psy2896 140 KGGKVGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
..+-.++.|++|+|||+++..+++...+
T Consensus 35 l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c 62 (394)
T PRK07940 35 MTHAWLFTGPPGSGRSVAARAFAAALQC 62 (394)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 4677899999999999999999886544
No 399
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=93.10 E-value=0.057 Score=55.91 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=28.9
Q ss_pred eeeecc-cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 130 KVIDLI-CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 130 r~ID~l-~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
.+++.+ +.+.+|+..+|+|++|+|||||+..|+.-
T Consensus 19 ~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl 54 (343)
T TIGR02314 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL 54 (343)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 344444 56999999999999999999999988763
No 400
>KOG0744|consensus
Probab=93.10 E-value=0.31 Score=49.93 Aligned_cols=90 Identities=22% Similarity=0.143 Sum_probs=57.0
Q ss_pred CceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEE-EecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCH
Q psy2896 141 GGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFT-GVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPS 219 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~-liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~ 219 (467)
---+++-||||+|||+||..++....-+..|-..++ +|--...-. |-+=+.|+|-
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsL--FSKWFsESgK---------------------- 232 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSL--FSKWFSESGK---------------------- 232 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHH--HHHHHhhhhh----------------------
Confidence 335688999999999999998875433323333332 332222222 3333434331
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHHHHhH
Q psy2896 220 GNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGT 258 (467)
Q Consensus 220 ~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a~A~r 258 (467)
.++-+=-.|.|-.-|.|--|.+++|.+-.+|.|..
T Consensus 233 ----lV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~ 267 (423)
T KOG0744|consen 233 ----LVAKMFQKIQELVEDRGNLVFVLIDEVESLAAART 267 (423)
T ss_pred ----HHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHH
Confidence 23445556778877889999999999988887654
No 401
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=93.10 E-value=0.037 Score=57.18 Aligned_cols=36 Identities=22% Similarity=0.387 Sum_probs=30.0
Q ss_pred eeeecc-cccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2896 130 KVIDLI-CPFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 130 r~ID~l-~pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
.++|.+ +.+.+|+.++|.|+.|+|||||+..|+-..
T Consensus 55 ~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~ 91 (340)
T PRK13536 55 AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMT 91 (340)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 455444 579999999999999999999999987643
No 402
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.10 E-value=0.058 Score=53.60 Aligned_cols=29 Identities=28% Similarity=0.536 Sum_probs=26.6
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 34 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 34 CDIPRGKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 67899999999999999999999988764
No 403
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.09 E-value=0.79 Score=41.40 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=20.7
Q ss_pred eeeecCCCCCchhhHHHHHHHHHh
Q psy2896 144 VGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 144 ~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
+.|.|.+|+|||||+..++.....
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 568899999999999999987643
No 404
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=93.09 E-value=0.29 Score=52.52 Aligned_cols=32 Identities=31% Similarity=0.421 Sum_probs=24.6
Q ss_pred eeeeecCCCCCchhhHHHHHHHHHhhCCCEEE
Q psy2896 143 KVGLFGGAGVGKTVNMMELINNIAKAHSGLSV 174 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V 174 (467)
.+.|+|++|+|||.|+..+++...+.+++..|
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v 174 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKV 174 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeE
Confidence 47799999999999999888866554444433
No 405
>PRK10867 signal recognition particle protein; Provisional
Probab=93.08 E-value=0.76 Score=49.16 Aligned_cols=40 Identities=18% Similarity=0.200 Sum_probs=29.4
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHHHhh-CCCEEEEEEecC
Q psy2896 140 KGGKVGLFGGAGVGKTVNMMELINNIAKA-HSGLSVFTGVGE 180 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~~~~-~~dv~V~~liGe 180 (467)
+-..+.+.|++|+||||++..+|....+. +..+.++ .++-
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV-~~D~ 139 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLV-AADV 139 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEE-Eccc
Confidence 34678999999999999999999977655 3334444 3443
No 406
>PRK07952 DNA replication protein DnaC; Validated
Probab=93.07 E-value=0.28 Score=48.45 Aligned_cols=43 Identities=16% Similarity=0.202 Sum_probs=30.6
Q ss_pred ceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHH
Q psy2896 142 GKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEM 192 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~ 192 (467)
+-..+.|++|+|||.|+..|++...+.+..+.++ .+.++...+
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i--------t~~~l~~~l 142 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII--------TVADIMSAM 142 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE--------EHHHHHHHH
Confidence 4678999999999999999999876543333222 345566555
No 407
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=93.06 E-value=0.062 Score=45.98 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=19.6
Q ss_pred eeeecCCCCCchhhHHHHHHHH
Q psy2896 144 VGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 144 ~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
++|.|.+|+|||||+..+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999998763
No 408
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.05 E-value=0.06 Score=53.69 Aligned_cols=29 Identities=28% Similarity=0.492 Sum_probs=26.5
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (274)
T PRK13647 26 LSIPEGSKTALLGPNGAGKSTLLLHLNGI 54 (274)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 56899999999999999999999988764
No 409
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=93.04 E-value=0.19 Score=50.38 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=21.3
Q ss_pred CceeeeecCCCCCchhhHHHHHHHH
Q psy2896 141 GGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
.+.+.++|++|+|||+|+..+++..
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999999887653
No 410
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=93.03 E-value=0.06 Score=53.55 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=27.8
Q ss_pred ecccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 133 DLICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 133 D~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
|.=+.+.+|++++|.|++|+|||||+..|+.-
T Consensus 42 ~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl 73 (264)
T PRK13546 42 DISLKAYEGDVIGLVGINGSGKSTLSNIIGGS 73 (264)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34456899999999999999999999988764
No 411
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=93.03 E-value=0.061 Score=51.87 Aligned_cols=29 Identities=28% Similarity=0.512 Sum_probs=26.4
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..++..
T Consensus 43 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 43 FEVPRGERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999999988764
No 412
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.03 E-value=0.91 Score=45.54 Aligned_cols=50 Identities=18% Similarity=0.248 Sum_probs=35.0
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHH
Q psy2896 140 KGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFY 189 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~ 189 (467)
+|+++.+.|++|+|||+++..++.........+.++..=+.|..-+..+.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~ 123 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQ 123 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH
Confidence 78999999999999999999998875543334455544455544444443
No 413
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=93.02 E-value=0.064 Score=51.41 Aligned_cols=29 Identities=28% Similarity=0.232 Sum_probs=26.1
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
=+.+.+|++++|.|++|+|||||+..|+-
T Consensus 25 s~~i~~G~~~~I~G~nGsGKStLl~~l~G 53 (220)
T TIGR02982 25 NLEINPGEIVILTGPSGSGKTTLLTLIGG 53 (220)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 35688999999999999999999998875
No 414
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.01 E-value=0.066 Score=48.45 Aligned_cols=33 Identities=21% Similarity=0.366 Sum_probs=28.0
Q ss_pred ecccccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2896 133 DLICPFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 133 D~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
|.-+.+.+|+..+|.|++|+|||||+..++...
T Consensus 17 ~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 17 NVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444568899999999999999999999887643
No 415
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.01 E-value=0.049 Score=54.78 Aligned_cols=30 Identities=23% Similarity=0.421 Sum_probs=26.9
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (290)
T PRK13634 28 VSIPSGSYVAIIGHTGSGKSTLLQHLNGLL 57 (290)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 569999999999999999999999887643
No 416
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.00 E-value=0.51 Score=45.88 Aligned_cols=38 Identities=13% Similarity=-0.078 Sum_probs=31.6
Q ss_pred eeeecccccccCceeeeecCCCCCchhhHHHHHHHHHh
Q psy2896 130 KVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 130 r~ID~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
..-|.-+.+..|+++.|.|+.++|||+++..++.+...
T Consensus 20 v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~l 57 (222)
T cd03287 20 VPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIM 57 (222)
T ss_pred EEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45666667889999999999999999999999885433
No 417
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.97 E-value=0.12 Score=46.58 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=28.2
Q ss_pred eeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEec
Q psy2896 143 KVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVG 179 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liG 179 (467)
+++|+|+.++|||||+..+++...+++-.++++-=.+
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~ 38 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTD 38 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-S
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEcc
Confidence 5789999999999999999998876654566664443
No 418
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.96 E-value=0.18 Score=48.51 Aligned_cols=63 Identities=14% Similarity=0.199 Sum_probs=43.6
Q ss_pred cccccccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEE--EecCCchHHHHHHHHHHhhc
Q psy2896 134 LICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFT--GVGERTREGNDFYHEMIEAK 196 (467)
Q Consensus 134 ~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~--liGeR~~ev~e~~~~~~~~~ 196 (467)
.-+.+-+|+-..|+||.|+|||||+.+++|-..++.+.+.|=+ +-.-...+.+.-+.-++++.
T Consensus 20 isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N 84 (252)
T COG4604 20 VSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQEN 84 (252)
T ss_pred ceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhc
Confidence 3445899999999999999999999999997665544444433 33334455555555554443
No 419
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=92.95 E-value=0.063 Score=54.32 Aligned_cols=29 Identities=31% Similarity=0.482 Sum_probs=26.4
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|+.|+|||||+..|+--
T Consensus 23 ~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 23 FEAQKGRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred EEEeCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999999988753
No 420
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=92.92 E-value=0.057 Score=52.91 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=27.4
Q ss_pred ecccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 133 DLICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 133 D~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
|.=+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 14 ~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl 45 (248)
T PRK03695 14 PLSAEVRAGEILHLVGPNGAGKSTLLARMAGL 45 (248)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 33356899999999999999999999988753
No 421
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=92.92 E-value=0.057 Score=54.03 Aligned_cols=55 Identities=27% Similarity=0.353 Sum_probs=43.2
Q ss_pred eeeecccccccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchH
Q psy2896 130 KVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTRE 184 (467)
Q Consensus 130 r~ID~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~e 184 (467)
.+-|.-+.|.+|+++|+.|+.|+||||++.|+.--....++.+-|-+.+..|.++
T Consensus 39 AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~ 93 (325)
T COG4586 39 AVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRRE 93 (325)
T ss_pred hhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHH
Confidence 4678888899999999999999999999999876444444456677777766444
No 422
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.92 E-value=0.053 Score=54.25 Aligned_cols=29 Identities=24% Similarity=0.239 Sum_probs=26.4
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 28 l~i~~Ge~~~i~G~nGaGKSTLl~~i~G~ 56 (279)
T PRK13635 28 FSVYEGEWVAIVGHNGSGKSTLAKLLNGL 56 (279)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 66899999999999999999999988754
No 423
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=92.91 E-value=0.059 Score=52.44 Aligned_cols=29 Identities=21% Similarity=0.284 Sum_probs=26.1
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|++++|.|++|+|||||+..|+..
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 22 LEVRPGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 56889999999999999999999987764
No 424
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.90 E-value=0.064 Score=53.89 Aligned_cols=34 Identities=29% Similarity=0.447 Sum_probs=28.8
Q ss_pred eeecc-cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 131 VIDLI-CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 131 ~ID~l-~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+++.+ +.+.+|+.++|.|++|+|||||+..|+..
T Consensus 22 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl 56 (287)
T PRK13637 22 ALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGL 56 (287)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 44443 67899999999999999999999988754
No 425
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=92.89 E-value=0.063 Score=56.06 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=26.8
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+.+|+.++|+|++|+|||||+..|+-.
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl 52 (369)
T PRK11000 23 NLDIHEGEFVVFVGPSGCGKSTLLRMIAGL 52 (369)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 357899999999999999999999988753
No 426
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=92.89 E-value=0.092 Score=53.10 Aligned_cols=47 Identities=17% Similarity=0.355 Sum_probs=38.1
Q ss_pred eeeecccc-cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEE
Q psy2896 130 KVIDLICP-FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFT 176 (467)
Q Consensus 130 r~ID~l~p-igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~ 176 (467)
..+..+.| .|+=+++||.|.||+|||||.-.+++........|.|++
T Consensus 39 ~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlA 86 (323)
T COG1703 39 ELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLA 86 (323)
T ss_pred HHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEE
Confidence 34555666 889999999999999999999999998766555577773
No 427
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.89 E-value=0.065 Score=53.57 Aligned_cols=32 Identities=19% Similarity=0.300 Sum_probs=28.0
Q ss_pred ecccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 133 DLICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 133 D~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
|.=+.+.+|+.++|.|++|+|||||+..|+.-
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (279)
T PRK13650 25 DVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGL 56 (279)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 44467999999999999999999999988764
No 428
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=92.89 E-value=0.052 Score=54.22 Aligned_cols=30 Identities=20% Similarity=0.273 Sum_probs=26.9
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 31 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 60 (280)
T PRK13633 31 LEVKKGEFLVILGRNGSGKSTIAKHMNALL 60 (280)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 568899999999999999999999888653
No 429
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.88 E-value=0.65 Score=49.53 Aligned_cols=39 Identities=33% Similarity=0.541 Sum_probs=29.5
Q ss_pred cccCceeeeecCCCCCchhhHHHHHHHHH-hh-CCCEEEEE
Q psy2896 138 FSKGGKVGLFGGAGVGKTVNMMELINNIA-KA-HSGLSVFT 176 (467)
Q Consensus 138 igrGqr~~I~g~~g~GKt~L~~~i~~~~~-~~-~~dv~V~~ 176 (467)
+.+|..+.+.|++|+||||++..++...+ .. +..|.++.
T Consensus 218 ~~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 218 LKQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 45688999999999999999999998765 22 23455443
No 430
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=92.88 E-value=0.08 Score=55.64 Aligned_cols=37 Identities=30% Similarity=0.564 Sum_probs=32.5
Q ss_pred ceeeecc-cccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2896 129 IKVIDLI-CPFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 129 Ir~ID~l-~pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
++++|.+ +++-+||.+||+|.+|+|||||-..+.+-.
T Consensus 300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~ 337 (534)
T COG4172 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI 337 (534)
T ss_pred eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhc
Confidence 5778776 469999999999999999999999998854
No 431
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.88 E-value=0.066 Score=53.74 Aligned_cols=29 Identities=14% Similarity=0.233 Sum_probs=26.4
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|++++|+|++|+|||||+..|+..
T Consensus 60 ~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 88 (285)
T PRK14254 60 MDIPENQVTAMIGPSGCGKSTFLRCINRM 88 (285)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46889999999999999999999988754
No 432
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.87 E-value=0.067 Score=52.86 Aligned_cols=33 Identities=15% Similarity=0.163 Sum_probs=27.7
Q ss_pred eecccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 132 IDLICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 132 ID~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
-|.=+.+-+|++++|+|++|+|||||+..|+-.
T Consensus 33 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 65 (265)
T PRK14252 33 KNINMMVHEKQVTALIGPSGCGKSTFLRCFNRM 65 (265)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 344456889999999999999999999988753
No 433
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.86 E-value=0.58 Score=49.56 Aligned_cols=43 Identities=21% Similarity=0.312 Sum_probs=31.8
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCC
Q psy2896 139 SKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGER 181 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR 181 (467)
.++.+++|+|+.|+||||++.-++......+..+.++..=..|
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 3567999999999999999999998766544445555433344
No 434
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=92.85 E-value=0.067 Score=53.81 Aligned_cols=33 Identities=24% Similarity=0.479 Sum_probs=28.0
Q ss_pred ecccccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2896 133 DLICPFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 133 D~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
|.=+.+.+|++++|+|++|+|||||+..|+...
T Consensus 55 ~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~ 87 (282)
T cd03291 55 NINLKIEKGEMLAITGSTGSGKTSLLMLILGEL 87 (282)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344568999999999999999999999887643
No 435
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=92.85 E-value=0.066 Score=52.74 Aligned_cols=29 Identities=28% Similarity=0.464 Sum_probs=26.3
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 42 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (257)
T cd03288 42 AYIKPGQKVGICGRTGSGKSSLSLAFFRM 70 (257)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcc
Confidence 56889999999999999999999988764
No 436
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.84 E-value=0.067 Score=53.34 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=27.9
Q ss_pred ecccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 133 DLICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 133 D~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
|.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (274)
T PRK13644 20 NINLVIKKGEYIGIIGKNGSGKSTLALHLNGL 51 (274)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 33467899999999999999999999988864
No 437
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=92.83 E-value=0.11 Score=50.33 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.1
Q ss_pred eeeecCCCCCchhhHHHHHHHHH
Q psy2896 144 VGLFGGAGVGKTVNMMELINNIA 166 (467)
Q Consensus 144 ~~I~g~~g~GKt~L~~~i~~~~~ 166 (467)
+||.|++|+||||++..|+....
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHh
Confidence 68999999999999998887553
No 438
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=92.83 E-value=0.064 Score=56.25 Aligned_cols=31 Identities=26% Similarity=0.366 Sum_probs=27.3
Q ss_pred cccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 134 LICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 134 ~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
.=+.+.+|+.++|+|++|+|||||+..|+--
T Consensus 38 vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl 68 (377)
T PRK11607 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGF 68 (377)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4467899999999999999999999988753
No 439
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=92.80 E-value=0.064 Score=52.68 Aligned_cols=29 Identities=28% Similarity=0.407 Sum_probs=26.1
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (256)
T TIGR03873 22 VTAPPGSLTGLLGPNGSGKSTLLRLLAGA 50 (256)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 46889999999999999999999988764
No 440
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=92.80 E-value=0.051 Score=55.21 Aligned_cols=36 Identities=31% Similarity=0.475 Sum_probs=29.4
Q ss_pred eeeecc-cccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2896 130 KVIDLI-CPFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 130 r~ID~l-~pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
.++|.+ +.+.+|+..+|.|+.|+|||||+..|+...
T Consensus 21 ~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~ 57 (306)
T PRK13537 21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLT 57 (306)
T ss_pred EEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 344443 568999999999999999999999988643
No 441
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.78 E-value=0.068 Score=52.75 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=26.7
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+.+|++++|+|++|+|||||+..|+..
T Consensus 30 s~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~ 59 (257)
T PRK14246 30 TIKIPNNSIFGIMGPSGSGKSTLLKVLNRL 59 (257)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 356889999999999999999999988864
No 442
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.76 E-value=0.069 Score=51.79 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=26.6
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+.+|++++|.|++|+|||||+..++..
T Consensus 19 s~~i~~Ge~~~i~G~nG~GKStLl~~l~G~ 48 (235)
T cd03299 19 SLEVERGDYFVILGPTGSGKSVLLETIAGF 48 (235)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 367889999999999999999999987664
No 443
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=92.75 E-value=0.054 Score=58.91 Aligned_cols=30 Identities=27% Similarity=0.447 Sum_probs=26.8
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+-+|++++|.|++|+|||||+.-+.+-
T Consensus 355 sl~i~~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 355 SLDLPPGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 356999999999999999999999988764
No 444
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.74 E-value=0.28 Score=54.70 Aligned_cols=26 Identities=27% Similarity=0.211 Sum_probs=22.1
Q ss_pred ceeeeecCCCCCchhhHHHHHHHHHh
Q psy2896 142 GKVGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
+-.++.|++|+|||+++.-+++...+
T Consensus 39 ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 39 HAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34589999999999999999987654
No 445
>KOG0057|consensus
Probab=92.72 E-value=0.1 Score=56.58 Aligned_cols=31 Identities=29% Similarity=0.469 Sum_probs=28.1
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINNIA 166 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~~~ 166 (467)
++|.+|.+++|.|++|+||||++..+-+-..
T Consensus 373 f~I~kGekVaIvG~nGsGKSTilr~LlrF~d 403 (591)
T KOG0057|consen 373 FTIPKGEKVAIVGSNGSGKSTILRLLLRFFD 403 (591)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4699999999999999999999999998643
No 446
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=92.72 E-value=0.13 Score=48.17 Aligned_cols=32 Identities=34% Similarity=0.438 Sum_probs=24.4
Q ss_pred eeeecCCCCCchhhHHHHHHHHHhhCCCEEEE
Q psy2896 144 VGLFGGAGVGKTVNMMELINNIAKAHSGLSVF 175 (467)
Q Consensus 144 ~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~ 175 (467)
++|.|++|+|||||+..++....+.+..+.++
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i 33 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVI 33 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 68999999999999999998765433334443
No 447
>KOG0733|consensus
Probab=92.72 E-value=0.29 Score=53.84 Aligned_cols=94 Identities=18% Similarity=0.169 Sum_probs=58.3
Q ss_pred eeeecCCCCCchhhHHHHHHHHHhh----CCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCH
Q psy2896 144 VGLFGGAGVGKTVNMMELINNIAKA----HSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPS 219 (467)
Q Consensus 144 ~~I~g~~g~GKt~L~~~i~~~~~~~----~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~ 219 (467)
+++-||||||||.|+..++....-. +..-+|-+..||...-++|+.+..... . =|++++.--|.=.
T Consensus 226 vLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~---a-------PcivFiDeIDAI~ 295 (802)
T KOG0733|consen 226 VLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSN---A-------PCIVFIDEIDAIT 295 (802)
T ss_pred eeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhcc---C-------CeEEEeecccccc
Confidence 6889999999999888877653110 001123367899888888888876432 2 5777766554322
Q ss_pred ---------HHHHHHHHHHHHHHHHHHH--CCCcEEEEE
Q psy2896 220 ---------GNRLRVALTGLTIAEGFRD--EGKDVLFFI 247 (467)
Q Consensus 220 ---------~~r~~~~~~a~~~AE~fr~--~g~~Vlvi~ 247 (467)
++|..++-....+-|-=+. .|+.||||-
T Consensus 296 pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIg 334 (802)
T KOG0733|consen 296 PKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIG 334 (802)
T ss_pred cchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEe
Confidence 2344444444444443333 388999984
No 448
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=92.70 E-value=0.049 Score=56.84 Aligned_cols=32 Identities=25% Similarity=0.263 Sum_probs=28.0
Q ss_pred cccccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2896 134 LICPFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 134 ~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
.=+.+.+|+..+|.|++|+|||||+.+|+...
T Consensus 12 vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~ 43 (363)
T TIGR01186 12 ADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLI 43 (363)
T ss_pred eEEEEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 33569999999999999999999999988754
No 449
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=92.70 E-value=0.072 Score=55.57 Aligned_cols=31 Identities=26% Similarity=0.377 Sum_probs=27.1
Q ss_pred cccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 134 LICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 134 ~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
.=+.+.+|+.++|+|++|+|||||+..|+-.
T Consensus 24 vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl 54 (362)
T TIGR03258 24 LSLEIEAGELLALIGKSGCGKTTLLRAIAGF 54 (362)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3366889999999999999999999988853
No 450
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.69 E-value=0.07 Score=53.23 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=29.1
Q ss_pred eeecc-cccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2896 131 VIDLI-CPFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 131 ~ID~l-~pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+++.+ +.+-+|+.++|.|++|+|||||+..|+...
T Consensus 22 ~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 57 (277)
T PRK13642 22 QLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLF 57 (277)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44444 578999999999999999999999887643
No 451
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=92.69 E-value=0.073 Score=53.36 Aligned_cols=30 Identities=30% Similarity=0.588 Sum_probs=27.5
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+.|.+|++++|+|++|+|||||+..|+...
T Consensus 25 l~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~ 54 (275)
T cd03289 25 FSISPGQRVGLLGRTGSGKSTLLSAFLRLL 54 (275)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 579999999999999999999999988764
No 452
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=92.67 E-value=0.074 Score=52.81 Aligned_cols=36 Identities=25% Similarity=0.369 Sum_probs=30.0
Q ss_pred cceeeecc-cccccCceeeeecCCCCCchhhHHHHHH
Q psy2896 128 GIKVIDLI-CPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 128 GIr~ID~l-~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
+-+++|-+ ++|..|.-+.++|+|||||||++.||=+
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINr 49 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINR 49 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhc
Confidence 44566554 5699999999999999999999998755
No 453
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=92.65 E-value=0.83 Score=48.78 Aligned_cols=37 Identities=19% Similarity=0.168 Sum_probs=28.3
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEE
Q psy2896 140 KGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFT 176 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~ 176 (467)
+-..+.+.|.+|+||||++..++....+.+..|.++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~ 135 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVC 135 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence 3467899999999999999999987655433444443
No 454
>PRK08233 hypothetical protein; Provisional
Probab=92.63 E-value=0.083 Score=48.47 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=22.2
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHH
Q psy2896 140 KGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
++..++|.|++|+|||||+..++...
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhC
Confidence 35678999999999999999988753
No 455
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.63 E-value=0.68 Score=50.07 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=21.3
Q ss_pred eeeeecCCCCCchhhHHHHHHHHHh
Q psy2896 143 KVGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
-+.++|++|+||||++.-+++...+
T Consensus 38 ~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3689999999999999999886543
No 456
>PTZ00301 uridine kinase; Provisional
Probab=92.63 E-value=0.13 Score=49.64 Aligned_cols=25 Identities=20% Similarity=0.500 Sum_probs=21.3
Q ss_pred eeeeecCCCCCchhhHHHHHHHHHh
Q psy2896 143 KVGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
-+||-|+||+|||||+..++....+
T Consensus 5 iIgIaG~SgSGKTTla~~l~~~l~~ 29 (210)
T PTZ00301 5 VIGISGASGSGKSSLSTNIVSELMA 29 (210)
T ss_pred EEEEECCCcCCHHHHHHHHHHHHHh
Confidence 3799999999999999988876543
No 457
>KOG0743|consensus
Probab=92.58 E-value=0.12 Score=54.73 Aligned_cols=62 Identities=11% Similarity=0.135 Sum_probs=40.6
Q ss_pred eeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCc-hHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHH
Q psy2896 144 VGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERT-REGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSG 220 (467)
Q Consensus 144 ~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~-~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~ 220 (467)
-+++||||+|||+++..||+...- ||+.+=|-.-+. .|.+.++... - .++|+|+..-|.+..
T Consensus 238 YLLYGPPGTGKSS~IaAmAn~L~y---dIydLeLt~v~~n~dLr~LL~~t-----~-------~kSIivIEDIDcs~~ 300 (457)
T KOG0743|consen 238 YLLYGPPGTGKSSFIAAMANYLNY---DIYDLELTEVKLDSDLRHLLLAT-----P-------NKSILLIEDIDCSFD 300 (457)
T ss_pred ceeeCCCCCCHHHHHHHHHhhcCC---ceEEeeeccccCcHHHHHHHHhC-----C-------CCcEEEEeecccccc
Confidence 478999999999999999987632 566664433222 2333333332 2 299999998885543
No 458
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=92.56 E-value=0.075 Score=54.90 Aligned_cols=30 Identities=20% Similarity=0.277 Sum_probs=26.7
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 25 sl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl 54 (343)
T PRK11153 25 SLHIPAGEIFGVIGASGAGKSTLIRCINLL 54 (343)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 356899999999999999999999988764
No 459
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.56 E-value=0.084 Score=50.30 Aligned_cols=31 Identities=19% Similarity=0.396 Sum_probs=28.3
Q ss_pred ecccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 133 DLICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 133 D~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
|.=+.+.+ +.++|.|++|+|||||+..|+..
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~ 46 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCC
Confidence 77788999 99999999999999999988764
No 460
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=92.54 E-value=0.15 Score=47.80 Aligned_cols=48 Identities=23% Similarity=0.382 Sum_probs=32.6
Q ss_pred cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHH
Q psy2896 138 FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMI 193 (467)
Q Consensus 138 igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~ 193 (467)
+.+|+.+.|+|++|+|||.|+..|++.....+ --+.|. ...++++.+.
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g-~~v~f~-------~~~~L~~~l~ 91 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIRKG-YSVLFI-------TASDLLDELK 91 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHHTT---EEEE-------EHHHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhccCC-cceeEe-------ecCceecccc
Confidence 45788999999999999999999998766532 223333 3456777774
No 461
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=92.54 E-value=0.095 Score=54.35 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=28.7
Q ss_pred ecccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 133 DLICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 133 D~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
|.=+.+.+|+.++|+|++|+|||||+..|+-.
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl 46 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGL 46 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 66678999999999999999999999988764
No 462
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.49 E-value=0.85 Score=49.75 Aligned_cols=26 Identities=23% Similarity=0.174 Sum_probs=22.3
Q ss_pred ceeeeecCCCCCchhhHHHHHHHHHh
Q psy2896 142 GKVGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
+-.++.|++|+||||++..+++...+
T Consensus 37 ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 37 HAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 44589999999999999999987654
No 463
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=92.48 E-value=0.081 Score=50.34 Aligned_cols=26 Identities=35% Similarity=0.588 Sum_probs=23.0
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHH
Q psy2896 140 KGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+|..++|.|++|+|||||+..++...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999999887643
No 464
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.47 E-value=0.67 Score=50.33 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=21.8
Q ss_pred ceeeeecCCCCCchhhHHHHHHHHH
Q psy2896 142 GKVGLFGGAGVGKTVNMMELINNIA 166 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~~~ 166 (467)
+-.++.|++|+||||++.-+++...
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilAk~Ln 60 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIISLCLN 60 (491)
T ss_pred ceEEEECCCCccHHHHHHHHHHHHc
Confidence 5688999999999999999988654
No 465
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.44 E-value=0.081 Score=54.16 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=28.9
Q ss_pred eeecc-cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 131 VIDLI-CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 131 ~ID~l-~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+++.+ +.+.+|+.++|.|++|+|||||+..|+.-
T Consensus 41 ~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl 75 (320)
T PRK13631 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL 75 (320)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44444 67999999999999999999999988763
No 466
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=92.42 E-value=0.39 Score=50.22 Aligned_cols=89 Identities=11% Similarity=0.213 Sum_probs=53.4
Q ss_pred ceeeeecCCCCCchhhHHHHHHHHHhhCCCE-EEEE---EecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCC
Q psy2896 142 GKVGLFGGAGVGKTVNMMELINNIAKAHSGL-SVFT---GVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNE 217 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv-~V~~---liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~ 217 (467)
-.+.|.|++|+|||.++..+++.......+. ++|+ -...+.+-..++++.+. .
T Consensus 43 ~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~-----------------------~ 99 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLG-----------------------K 99 (366)
T ss_pred ccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcC-----------------------C
Confidence 3588999999999999999999765543444 5554 22222222223333331 1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHH
Q psy2896 218 PSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRY 253 (467)
Q Consensus 218 ~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~ 253 (467)
+|.........=..+-+++..+++.+++++|.+-.+
T Consensus 100 ~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L 135 (366)
T COG1474 100 VPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDAL 135 (366)
T ss_pred CCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhh
Confidence 122122223333345566777899999999988753
No 467
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.42 E-value=0.083 Score=52.16 Aligned_cols=30 Identities=17% Similarity=0.201 Sum_probs=27.0
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+.+|+.++|.|++|+|||||+..++.-
T Consensus 27 s~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 56 (261)
T PRK14258 27 SMEIYQSKVTAIIGPSGCGKSTFLKCLNRM 56 (261)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 356889999999999999999999988864
No 468
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=92.41 E-value=0.27 Score=55.84 Aligned_cols=28 Identities=32% Similarity=0.437 Sum_probs=23.2
Q ss_pred cccCceeeeecCCCCCchhhHHHHHHHH
Q psy2896 138 FSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 138 igrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
-++-..+.|+|++|+|||+|+.-+++..
T Consensus 49 ~~~~~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3455678999999999999999888754
No 469
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.40 E-value=0.77 Score=48.38 Aligned_cols=46 Identities=26% Similarity=0.342 Sum_probs=33.9
Q ss_pred ccccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCc
Q psy2896 137 PFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERT 182 (467)
Q Consensus 137 pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~ 182 (467)
.+.+|..+.|.|+.|+||||++.-++.....++..+.++.+=-.|.
T Consensus 202 ~~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 202 DLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 4678999999999999999999999987655443455554333344
No 470
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.39 E-value=0.72 Score=47.40 Aligned_cols=95 Identities=24% Similarity=0.331 Sum_probs=56.8
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEE-eCCCCC
Q psy2896 140 KGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVY-GQMNEP 218 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~-~t~d~~ 218 (467)
+---++++|-.|+||||-+.-+|+...++ +..|+..-|-.+|-.+ ++.++..+-.- .+-+|. ....+|
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~--g~~VllaA~DTFRAaA--iEQL~~w~er~-------gv~vI~~~~G~Dp 206 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQ--GKSVLLAAGDTFRAAA--IEQLEVWGERL-------GVPVISGKEGADP 206 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHC--CCeEEEEecchHHHHH--HHHHHHHHHHh-------CCeEEccCCCCCc
Confidence 45678999999999999999999987654 4555544455666443 22222221111 344444 345556
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHH
Q psy2896 219 SGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRY 253 (467)
Q Consensus 219 ~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~ 253 (467)
+. ++|-|+..| ..+|.||+++ |..-|+
T Consensus 207 Aa----VafDAi~~A---kar~~Dvvli-DTAGRL 233 (340)
T COG0552 207 AA----VAFDAIQAA---KARGIDVVLI-DTAGRL 233 (340)
T ss_pred HH----HHHHHHHHH---HHcCCCEEEE-eCcccc
Confidence 54 355555444 4578888765 655443
No 471
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.32 E-value=0.093 Score=49.45 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=23.6
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 139 SKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
-+|+.++|.|++|+|||||+..++..
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 47999999999999999999998875
No 472
>PRK05480 uridine/cytidine kinase; Provisional
Probab=92.31 E-value=0.15 Score=48.37 Aligned_cols=27 Identities=30% Similarity=0.492 Sum_probs=24.0
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHHH
Q psy2896 139 SKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
.++..++|.|++|+|||||+..|+...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 478899999999999999999888754
No 473
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.30 E-value=0.088 Score=52.53 Aligned_cols=31 Identities=13% Similarity=0.261 Sum_probs=27.4
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 24 sl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~ 54 (277)
T PRK13652 24 NFIAPRNSRIAVIGPNGAGKSTLFRHFNGIL 54 (277)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3678999999999999999999999887643
No 474
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.26 E-value=0.38 Score=52.62 Aligned_cols=33 Identities=33% Similarity=0.643 Sum_probs=28.5
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHHHHhh
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINNIAKA 168 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~ 168 (467)
-++.+|+.++|.|+.|+||||++..++......
T Consensus 345 ~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 345 DPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 457789999999999999999999999865544
No 475
>PRK14531 adenylate kinase; Provisional
Probab=92.25 E-value=0.098 Score=48.84 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=21.1
Q ss_pred ceeeeecCCCCCchhhHHHHHHH
Q psy2896 142 GKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+|+.|+|+||+||||++..++..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999998875
No 476
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=92.20 E-value=0.18 Score=52.01 Aligned_cols=39 Identities=21% Similarity=0.327 Sum_probs=30.7
Q ss_pred cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEE
Q psy2896 138 FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFT 176 (467)
Q Consensus 138 igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~ 176 (467)
.++.-+++|.|++|+|||||+..++......+..+.|++
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~ 91 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLA 91 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 456779999999999999999999987765443455553
No 477
>PRK14530 adenylate kinase; Provisional
Probab=92.09 E-value=0.11 Score=49.79 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=22.7
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHH
Q psy2896 140 KGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
.|-++.|+|+||+||||++..++...
T Consensus 2 ~~~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998753
No 478
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=92.06 E-value=0.088 Score=55.71 Aligned_cols=29 Identities=31% Similarity=0.480 Sum_probs=26.5
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 24 ~~i~~Geiv~liGpNGaGKSTLLk~LaGl 52 (402)
T PRK09536 24 LSVREGSLVGLVGPNGAGKTTLLRAINGT 52 (402)
T ss_pred EEECCCCEEEEECCCCchHHHHHHHHhcC
Confidence 56899999999999999999999998864
No 479
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.03 E-value=0.092 Score=48.36 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.7
Q ss_pred CceeeeecCCCCCchhhHHHHHHH
Q psy2896 141 GGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
|+.+.|.|++|+|||||+..++..
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHcc
Confidence 678999999999999999988863
No 480
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=92.03 E-value=0.35 Score=51.85 Aligned_cols=28 Identities=29% Similarity=0.300 Sum_probs=24.0
Q ss_pred cccCceeeeecCCCCCchhhHHHHHHHH
Q psy2896 138 FSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 138 igrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+-.|..+.++|++|+|||+++..++...
T Consensus 191 L~~~~~iil~GppGtGKT~lA~~la~~l 218 (459)
T PRK11331 191 LTIKKNIILQGPPGVGKTFVARRLAYLL 218 (459)
T ss_pred HhcCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 3457889999999999999999988764
No 481
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.97 E-value=0.097 Score=51.39 Aligned_cols=31 Identities=32% Similarity=0.414 Sum_probs=27.0
Q ss_pred ecccccccCceeeeecCCCCCchhhHHHHHH
Q psy2896 133 DLICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 133 D~l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
|.-+.+.+|++++|+|++|+|||||+..+.-
T Consensus 22 ~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~G 52 (235)
T COG1122 22 DVSLEIEKGERVLLIGPNGSGKSTLLKLLNG 52 (235)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHcC
Confidence 5556799999999999999999999987654
No 482
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.96 E-value=0.11 Score=47.84 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=22.0
Q ss_pred CceeeeecCCCCCchhhHHHHHHHH
Q psy2896 141 GGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
|+.+.|.|++|+|||||+..++...
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 5678999999999999999887754
No 483
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=91.94 E-value=0.073 Score=53.83 Aligned_cols=38 Identities=26% Similarity=0.365 Sum_probs=31.2
Q ss_pred ceeeecc-cccccCceeeeecCCCCCchhhHHHHHHHHH
Q psy2896 129 IKVIDLI-CPFSKGGKVGLFGGAGVGKTVNMMELINNIA 166 (467)
Q Consensus 129 Ir~ID~l-~pigrGqr~~I~g~~g~GKt~L~~~i~~~~~ 166 (467)
..++|.+ +.+.+|+..++.|+.|+|||||+.+++-...
T Consensus 18 ~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~ 56 (293)
T COG1131 18 KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK 56 (293)
T ss_pred CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4566555 4599999999999999999999999886543
No 484
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=91.93 E-value=0.097 Score=57.56 Aligned_cols=31 Identities=26% Similarity=0.312 Sum_probs=27.0
Q ss_pred cccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 134 LICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 134 ~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
.=+.+-+||+++|.|++|+|||||+.-|+.-
T Consensus 362 i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl 392 (582)
T PRK11176 362 INFKIPAGKTVALVGRSGSGKSTIANLLTRF 392 (582)
T ss_pred ceEEeCCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3345889999999999999999999988774
No 485
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=91.90 E-value=0.097 Score=56.89 Aligned_cols=34 Identities=29% Similarity=0.517 Sum_probs=28.9
Q ss_pred eee-cccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 131 VID-LICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 131 ~ID-~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+++ .=+.+.+|++++|+|++|+|||||+..|+..
T Consensus 15 ~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl 49 (520)
T TIGR03269 15 VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGM 49 (520)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 444 3356899999999999999999999998875
No 486
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=91.90 E-value=0.12 Score=43.92 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=20.0
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2896 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
|+.|+|++|+|||+|+..++..
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999988864
No 487
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=91.86 E-value=0.096 Score=58.63 Aligned_cols=30 Identities=37% Similarity=0.558 Sum_probs=27.0
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+.+|++++|+|+.|+|||||+..|+-.
T Consensus 21 s~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~ 50 (638)
T PRK10636 21 TATINPGQKVGLVGKNGCGKSTLLALLKNE 50 (638)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999999988764
No 488
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.86 E-value=0.1 Score=53.61 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=27.8
Q ss_pred cccccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2896 134 LICPFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 134 ~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
.=+.+.+|++++|.|++|+|||+|+..|+...
T Consensus 101 is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~ 132 (329)
T PRK14257 101 LNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLN 132 (329)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 33568999999999999999999999988653
No 489
>PLN03073 ABC transporter F family; Provisional
Probab=91.85 E-value=0.091 Score=59.64 Aligned_cols=31 Identities=29% Similarity=0.396 Sum_probs=27.5
Q ss_pred ecccccccCceeeeecCCCCCchhhHHHHHH
Q psy2896 133 DLICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 133 D~l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
|.=+.|..|.|++|+|+.|+|||||+..|+.
T Consensus 195 ~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g 225 (718)
T PLN03073 195 DASVTLAFGRHYGLVGRNGTGKTTFLRYMAM 225 (718)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHcC
Confidence 3456799999999999999999999998874
No 490
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=91.83 E-value=0.12 Score=56.43 Aligned_cols=47 Identities=28% Similarity=0.481 Sum_probs=35.5
Q ss_pred ceeeeccc-ccccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEE
Q psy2896 129 IKVIDLIC-PFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFT 176 (467)
Q Consensus 129 Ir~ID~l~-pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~ 176 (467)
++++|... .+-+|+..+|+|+||+|||||+..|+.-. .-.++.++|.
T Consensus 304 ~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~-~P~~G~i~~~ 351 (539)
T COG1123 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLL-PPSSGSIIFD 351 (539)
T ss_pred eeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEEe
Confidence 57777664 59999999999999999999999888633 2223445543
No 491
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=91.82 E-value=1.3 Score=43.27 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=23.9
Q ss_pred eeeecCCCCCchhhHHHHHHHHHhhCCCEEEE
Q psy2896 144 VGLFGGAGVGKTVNMMELINNIAKAHSGLSVF 175 (467)
Q Consensus 144 ~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~ 175 (467)
+.+.|.||+||||++..++......+.++.++
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i 33 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIIL 33 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEE
Confidence 46889999999999999998765433344443
No 492
>PRK06696 uridine kinase; Validated
Probab=91.82 E-value=0.19 Score=48.54 Aligned_cols=28 Identities=32% Similarity=0.296 Sum_probs=23.8
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHHHh
Q psy2896 140 KGGKVGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
+--.++|-|++|+|||||+..++....+
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3457899999999999999999987654
No 493
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=91.81 E-value=0.75 Score=43.85 Aligned_cols=24 Identities=25% Similarity=0.063 Sum_probs=20.6
Q ss_pred CceeeeecCCCCCchhhHHHHHHH
Q psy2896 141 GGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+-.+.|.|.||+||||++..++..
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 446789999999999999988875
No 494
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.81 E-value=0.6 Score=52.34 Aligned_cols=26 Identities=27% Similarity=0.178 Sum_probs=22.2
Q ss_pred ceeeeecCCCCCchhhHHHHHHHHHh
Q psy2896 142 GKVGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
+-.++.|++|+|||+++.-+++...+
T Consensus 38 HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 38 HAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45689999999999999999987654
No 495
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.80 E-value=0.11 Score=52.10 Aligned_cols=32 Identities=25% Similarity=0.418 Sum_probs=27.7
Q ss_pred ecccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2896 133 DLICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 133 D~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
|.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 24 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl 55 (283)
T PRK13636 24 GININIKKGEVTAILGGNGAGKSTLFQNLNGI 55 (283)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 33467889999999999999999999988764
No 496
>KOG0727|consensus
Probab=91.80 E-value=0.16 Score=50.35 Aligned_cols=64 Identities=23% Similarity=0.275 Sum_probs=44.3
Q ss_pred CceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEE------EecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeC
Q psy2896 141 GGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFT------GVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQ 214 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~------liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t 214 (467)
-+-++++||||+|||.|+...+++..+. =+-|.+ ..||-+|-|+++.+-.+++. -++++..-
T Consensus 189 prgvllygppg~gktml~kava~~t~a~--firvvgsefvqkylgegprmvrdvfrlakena----------psiifide 256 (408)
T KOG0727|consen 189 PRGVLLYGPPGTGKTMLAKAVANHTTAA--FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENA----------PSIIFIDE 256 (408)
T ss_pred CcceEEeCCCCCcHHHHHHHHhhccchh--eeeeccHHHHHHHhccCcHHHHHHHHHHhccC----------CcEEEeeh
Confidence 4558899999999999888887765542 123332 46888888888877765532 45666665
Q ss_pred CC
Q psy2896 215 MN 216 (467)
Q Consensus 215 ~d 216 (467)
-|
T Consensus 257 id 258 (408)
T KOG0727|consen 257 ID 258 (408)
T ss_pred hh
Confidence 55
No 497
>PRK08084 DNA replication initiation factor; Provisional
Probab=91.76 E-value=0.13 Score=50.28 Aligned_cols=28 Identities=14% Similarity=0.350 Sum_probs=23.5
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHHHh
Q psy2896 140 KGGKVGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
.+..+.|+|++|+|||.|+..+++...+
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQ 71 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4467899999999999999988876554
No 498
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=91.76 E-value=0.2 Score=46.57 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=27.7
Q ss_pred ceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEe
Q psy2896 142 GKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGV 178 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~li 178 (467)
-|++|.|.||+||||+++-++.....+ ++.|-+++
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~--g~kvgGf~ 40 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREK--GYKVGGFI 40 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhc--CceeeeEE
Confidence 478999999999999999999765443 46666655
No 499
>CHL00195 ycf46 Ycf46; Provisional
Probab=91.75 E-value=0.57 Score=50.89 Aligned_cols=47 Identities=23% Similarity=0.238 Sum_probs=31.1
Q ss_pred eeeeecCCCCCchhhHHHHHHHHHhhCCCEEE------E-EEecCCchHHHHHHHHH
Q psy2896 143 KVGLFGGAGVGKTVNMMELINNIAKAHSGLSV------F-TGVGERTREGNDFYHEM 192 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V------~-~liGeR~~ev~e~~~~~ 192 (467)
-++++|+||||||.++..++..... .... + ..+|+....++++.+..
T Consensus 261 GILL~GPpGTGKTllAkaiA~e~~~---~~~~l~~~~l~~~~vGese~~l~~~f~~A 314 (489)
T CHL00195 261 GLLLVGIQGTGKSLTAKAIANDWQL---PLLRLDVGKLFGGIVGESESRMRQMIRIA 314 (489)
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCC---CEEEEEhHHhcccccChHHHHHHHHHHHH
Confidence 3899999999999999888775421 2111 1 24677666666665544
No 500
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=91.68 E-value=0.2 Score=47.11 Aligned_cols=22 Identities=41% Similarity=0.792 Sum_probs=19.7
Q ss_pred eeeecCCCCCchhhHHHHHHHH
Q psy2896 144 VGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 144 ~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
++|.|++|+|||||+..+....
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999987754
Done!