BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2897
(467 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OAA|D Chain D, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|E Chain E, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|F Chain F, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|L Chain L, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|M Chain M, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|N Chain N, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|T Chain T, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|U Chain U, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|V Chain V, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|BB Chain b, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|CC Chain c, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|DD Chain d, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 459
Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/464 (70%), Positives = 374/464 (80%), Gaps = 9/464 (1%)
Query: 4 GKIIQCIGSVVDVEFPHNMVPKIYNALKIEN--SELTLEVQQQLGDGIVRTIVLGTSEGL 61
GKI+Q IG+VVDVEFP + VP++Y+AL+++N L LEVQQQLG GIVRTI +G+S+GL
Sbjct: 3 GKIVQVIGAVVDVEFPQDAVPRVYDALEVQNGNERLVLEVQQQLGGGIVRTIAMGSSDGL 62
Query: 62 RRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPXXXXXXXX 121
RRG VK+ PI +PVG+ATLGRI+NVLG+P+D KG I + +IHR P
Sbjct: 63 RRGLDVKDLEHPIEVPVGEATLGRIMNVLGEPVDMKGEIGEEERWAIHRAAPSYEELSNS 122
Query: 122 XXXXXTGIKVIDLICPFSXXXXXXXXXXXXXXXXXNMMELINNIAKAHSGLSVFTGVGER 181
TGIKVIDL+CPF+ NMMELI NIA HSG SVF GVGER
Sbjct: 123 QELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGER 182
Query: 182 TREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGK 241
TREGNDFYHEM ++ V++ KVS+VYGQMNEP GNRLRVALTGLT+AE FRDEG+
Sbjct: 183 TREGNDFYHEMTDSNVID-------KVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGR 235
Query: 242 DVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQA 301
DVL F+DNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMG LQERI STK GSITS+QA
Sbjct: 236 DVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQA 295
Query: 302 VYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYK 361
VYVPADDLTDPSPATTFAHLD+TVVLSR IASLGIYPA+DPLDSTSRQLDPL+VG++HY
Sbjct: 296 VYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYD 355
Query: 362 IARLVQSTLQRYKELRDIISILGMDELSPEDKLLVARARKMQRFLSQPFHVAEVFTGKSG 421
AR VQS LQRY+EL+DII+ILGMDELS EDKL+VARARK+QRFLSQPF VAEVFTG G
Sbjct: 356 TARGVQSILQRYQELKDIIAILGMDELSEEDKLVVARARKIQRFLSQPFFVAEVFTGSPG 415
Query: 422 KYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAIKKSKKL 465
KYVSLKDT+ GF I GE D++PEQAFYMVG+I+EA++K+KKL
Sbjct: 416 KYVSLKDTIRGFKGIMEGEYDHLPEQAFYMVGSIEEAVEKAKKL 459
>pdb|2W6E|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 528
Score = 580 bits (1496), Expect = e-166, Method: Compositional matrix adjust.
Identities = 293/469 (62%), Positives = 353/469 (75%), Gaps = 5/469 (1%)
Query: 2 SDGKIIQCIGSVVDVEFPHNMVPKIYNALKIENSE--LTLEVQQQLGDGIVRTIVLGTSE 59
+ G+I+ IG+VVDV+F + P I NAL+++ E L LEV Q LG+ VRTI + +E
Sbjct: 59 TTGRIVAVIGAVVDVQFDEGL-PPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTE 117
Query: 60 GLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPXXXXXX 119
GL RG V ++G PI IPVG TLGRI+NV+G+PIDE+G I K ++IH P
Sbjct: 118 GLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMS 177
Query: 120 XXXXXXXTGIKVIDLICPFSXXXXXXXXXXXXXXXXXNMMELINNIAKAHSGLSVFTGVG 179
TGIKV+DL+ P++ +MELINN+AKAH G SVF GVG
Sbjct: 178 VEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVG 237
Query: 180 ERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRD- 238
ERTREGND YHEMIE+ V+NL K SKV++VYGQMNEP G R RVALTGLT+AE FRD
Sbjct: 238 ERTREGNDLYHEMIESGVINL-KDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQ 296
Query: 239 EGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITS 298
EG+DVL FIDNI+R+T AG+EVSALLGR+PSAVGYQPTLA +MG +QERI +TKKGSITS
Sbjct: 297 EGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITS 356
Query: 299 IQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKK 358
+QA+YVPADDLTDP+PATTFAHLD+T VLSR IA LGIYPA+DPLDSTSR +DP IVG +
Sbjct: 357 VQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSE 416
Query: 359 HYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVARARKMQRFLSQPFHVAEVFTG 418
HY +AR VQ LQ YK L+DII+ILGMDELS EDKL V+RARK+QRFLSQPF VAEVFTG
Sbjct: 417 HYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTG 476
Query: 419 KSGKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAIKKSKKLMK 467
GK V LK+T+ GF I +GE D++PEQAFYMVG I+EA+ K+ KL +
Sbjct: 477 HLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLAE 525
>pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1BMF|D Chain D, Bovine Mitochondrial F1-Atpase
pdb|1BMF|E Chain E, Bovine Mitochondrial F1-Atpase
pdb|1BMF|F Chain F, Bovine Mitochondrial F1-Atpase
pdb|1QO1|D Chain D, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|E Chain E, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|F Chain F, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|D Chain D, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|E Chain E, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|F Chain F, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|D Chain D, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|E Chain E, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|F Chain F, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|E Chain E, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|F Chain F, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|D Chain D, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|E Chain E, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|F Chain F, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|E Chain E, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|F Chain F, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|D Chain D, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|E Chain E, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|F Chain F, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|D Chain D, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|E Chain E, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|F Chain F, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JIZ|D Chain D, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|E Chain E, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|F Chain F, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|K Chain K, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|L Chain L, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|M Chain M, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|D Chain D, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|E Chain E, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|F Chain F, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|K Chain K, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|L Chain L, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|M Chain M, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|D Chain D, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|E Chain E, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|F Chain F, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|K Chain K, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|L Chain L, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|M Chain M, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|D Chain D, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|E Chain E, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|F Chain F, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2WSS|D Chain D, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|E Chain E, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|F Chain F, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|M Chain M, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|N Chain N, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|O Chain O, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
Length = 482
Score = 580 bits (1496), Expect = e-166, Method: Compositional matrix adjust.
Identities = 293/469 (62%), Positives = 353/469 (75%), Gaps = 5/469 (1%)
Query: 2 SDGKIIQCIGSVVDVEFPHNMVPKIYNALKIENSE--LTLEVQQQLGDGIVRTIVLGTSE 59
+ G+I+ IG+VVDV+F + P I NAL+++ E L LEV Q LG+ VRTI + +E
Sbjct: 13 TTGRIVAVIGAVVDVQFDEGL-PPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTE 71
Query: 60 GLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPXXXXXX 119
GL RG V ++G PI IPVG TLGRI+NV+G+PIDE+G I K ++IH P
Sbjct: 72 GLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMS 131
Query: 120 XXXXXXXTGIKVIDLICPFSXXXXXXXXXXXXXXXXXNMMELINNIAKAHSGLSVFTGVG 179
TGIKV+DL+ P++ +MELINN+AKAH G SVF GVG
Sbjct: 132 VEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVG 191
Query: 180 ERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRD- 238
ERTREGND YHEMIE+ V+NL K SKV++VYGQMNEP G R RVALTGLT+AE FRD
Sbjct: 192 ERTREGNDLYHEMIESGVINL-KDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQ 250
Query: 239 EGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITS 298
EG+DVL FIDNI+R+T AG+EVSALLGR+PSAVGYQPTLA +MG +QERI +TKKGSITS
Sbjct: 251 EGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITS 310
Query: 299 IQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKK 358
+QA+YVPADDLTDP+PATTFAHLD+T VLSR IA LGIYPA+DPLDSTSR +DP IVG +
Sbjct: 311 VQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSE 370
Query: 359 HYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVARARKMQRFLSQPFHVAEVFTG 418
HY +AR VQ LQ YK L+DII+ILGMDELS EDKL V+RARK+QRFLSQPF VAEVFTG
Sbjct: 371 HYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTG 430
Query: 419 KSGKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAIKKSKKLMK 467
GK V LK+T+ GF I +GE D++PEQAFYMVG I+EA+ K+ KL +
Sbjct: 431 HLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLAE 479
>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|F Chain F, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 580 bits (1494), Expect = e-166, Method: Compositional matrix adjust.
Identities = 293/469 (62%), Positives = 353/469 (75%), Gaps = 5/469 (1%)
Query: 2 SDGKIIQCIGSVVDVEFPHNMVPKIYNALKIENSE--LTLEVQQQLGDGIVRTIVLGTSE 59
+ G+I+ IG+VVDV+F + P I NAL+++ E L LEV Q LG+ VRTI + +E
Sbjct: 13 TTGRIVAVIGAVVDVQFDEGL-PPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTE 71
Query: 60 GLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPXXXXXX 119
GL RG V ++G PI IPVG TLGRI+NV+G+PIDE+G I K ++IH P
Sbjct: 72 GLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMS 131
Query: 120 XXXXXXXTGIKVIDLICPFSXXXXXXXXXXXXXXXXXNMMELINNIAKAHSGLSVFTGVG 179
TGIKV+DL+ P++ +MELINN+AKAH G SVF GVG
Sbjct: 132 VEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVG 191
Query: 180 ERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRD- 238
ERTREGND YHEMIE+ V+NL K SKV++VYGQMNEP G R RVALTGLT+AE FRD
Sbjct: 192 ERTREGNDLYHEMIESGVINL-KDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQ 250
Query: 239 EGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITS 298
EG+DVL FIDNI+R+T AG+EVSALLGR+PSAVGYQPTLA +MG +QERI +TKKGSITS
Sbjct: 251 EGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITS 310
Query: 299 IQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKK 358
+QA+YVPADDLTDP+PATTFAHLD+T VLSR IA LGIYPA+DPLDSTSR +DP IVG +
Sbjct: 311 VQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSE 370
Query: 359 HYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVARARKMQRFLSQPFHVAEVFTG 418
HY +AR VQ LQ YK L+DII+ILGMDELS EDKL V+RARK+QRFLSQPF VAEVFTG
Sbjct: 371 HYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTG 430
Query: 419 KSGKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAIKKSKKLMK 467
GK V LK+T+ GF I +GE D++PEQAFYMVG I+EA+ K+ KL +
Sbjct: 431 HLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLAE 479
>pdb|2XND|D Chain D, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|E Chain E, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|F Chain F, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 467
Score = 579 bits (1493), Expect = e-165, Method: Compositional matrix adjust.
Identities = 293/469 (62%), Positives = 353/469 (75%), Gaps = 5/469 (1%)
Query: 2 SDGKIIQCIGSVVDVEFPHNMVPKIYNALKIENSE--LTLEVQQQLGDGIVRTIVLGTSE 59
+ G+I+ IG+VVDV+F + P I NAL+++ E L LEV Q LG+ VRTI + +E
Sbjct: 1 TTGRIVAVIGAVVDVQFDEGL-PPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTE 59
Query: 60 GLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPXXXXXX 119
GL RG V ++G PI IPVG TLGRI+NV+G+PIDE+G I K ++IH P
Sbjct: 60 GLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMS 119
Query: 120 XXXXXXXTGIKVIDLICPFSXXXXXXXXXXXXXXXXXNMMELINNIAKAHSGLSVFTGVG 179
TGIKV+DL+ P++ +MELINN+AKAH G SVF GVG
Sbjct: 120 VEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVG 179
Query: 180 ERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRD- 238
ERTREGND YHEMIE+ V+NL K SKV++VYGQMNEP G R RVALTGLT+AE FRD
Sbjct: 180 ERTREGNDLYHEMIESGVINL-KDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQ 238
Query: 239 EGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITS 298
EG+DVL FIDNI+R+T AG+EVSALLGR+PSAVGYQPTLA +MG +QERI +TKKGSITS
Sbjct: 239 EGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITS 298
Query: 299 IQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKK 358
+QA+YVPADDLTDP+PATTFAHLD+T VLSR IA LGIYPA+DPLDSTSR +DP IVG +
Sbjct: 299 VQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSE 358
Query: 359 HYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVARARKMQRFLSQPFHVAEVFTG 418
HY +AR VQ LQ YK L+DII+ILGMDELS EDKL V+RARK+QRFLSQPF VAEVFTG
Sbjct: 359 HYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTG 418
Query: 419 KSGKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAIKKSKKLMK 467
GK V LK+T+ GF I +GE D++PEQAFYMVG I+EA+ K+ KL +
Sbjct: 419 HLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLAE 467
>pdb|4ASU|D Chain D, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|E Chain E, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|F Chain F, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 480
Score = 579 bits (1492), Expect = e-165, Method: Compositional matrix adjust.
Identities = 293/469 (62%), Positives = 353/469 (75%), Gaps = 5/469 (1%)
Query: 2 SDGKIIQCIGSVVDVEFPHNMVPKIYNALKIENSE--LTLEVQQQLGDGIVRTIVLGTSE 59
+ G+I+ IG+VVDV+F + P I NAL+++ E L LEV Q LG+ VRTI + +E
Sbjct: 11 TTGRIVAVIGAVVDVQFDEGL-PPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTE 69
Query: 60 GLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPXXXXXX 119
GL RG V ++G PI IPVG TLGRI+NV+G+PIDE+G I K ++IH P
Sbjct: 70 GLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMS 129
Query: 120 XXXXXXXTGIKVIDLICPFSXXXXXXXXXXXXXXXXXNMMELINNIAKAHSGLSVFTGVG 179
TGIKV+DL+ P++ +MELINN+AKAH G SVF GVG
Sbjct: 130 VEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVG 189
Query: 180 ERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRD- 238
ERTREGND YHEMIE+ V+NL K SKV++VYGQMNEP G R RVALTGLT+AE FRD
Sbjct: 190 ERTREGNDLYHEMIESGVINL-KDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQ 248
Query: 239 EGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITS 298
EG+DVL FIDNI+R+T AG+EVSALLGR+PSAVGYQPTLA +MG +QERI +TKKGSITS
Sbjct: 249 EGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITS 308
Query: 299 IQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKK 358
+QA+YVPADDLTDP+PATTFAHLD+T VLSR IA LGIYPA+DPLDSTSR +DP IVG +
Sbjct: 309 VQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSE 368
Query: 359 HYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVARARKMQRFLSQPFHVAEVFTG 418
HY +AR VQ LQ YK L+DII+ILGMDELS EDKL V+RARK+QRFLSQPF VAEVFTG
Sbjct: 369 HYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTG 428
Query: 419 KSGKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAIKKSKKLMK 467
GK V LK+T+ GF I +GE D++PEQAFYMVG I+EA+ K+ KL +
Sbjct: 429 HLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLAE 477
>pdb|1MAB|B Chain B, Rat Liver F1-Atpase
pdb|2F43|B Chain B, Rat Liver F1-atpase
Length = 479
Score = 577 bits (1488), Expect = e-165, Method: Compositional matrix adjust.
Identities = 292/469 (62%), Positives = 352/469 (75%), Gaps = 5/469 (1%)
Query: 2 SDGKIIQCIGSVVDVEFPHNMVPKIYNALKIENSE--LTLEVQQQLGDGIVRTIVLGTSE 59
+ G+I+ IG+VVDV+F + P I NAL+++ E L LEV Q LG+ VRTI + +E
Sbjct: 9 ATGQIVAVIGAVVDVQFDEGL-PPILNALEVQGRESRLVLEVAQHLGESTVRTIAMDGTE 67
Query: 60 GLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPXXXXXX 119
GL RG V ++G PI IPVG TLGRI+NV+G+PIDE+G I K + IH P
Sbjct: 68 GLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFIEMS 127
Query: 120 XXXXXXXTGIKVIDLICPFSXXXXXXXXXXXXXXXXXNMMELINNIAKAHSGLSVFTGVG 179
TGIKV+DL+ P++ +MELINN+AKAH G SVF GVG
Sbjct: 128 VEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVG 187
Query: 180 ERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRD- 238
ERTREGND YHEMIE+ V+NL K SKV++VYGQMNEP G R RVALTGLT+AE FRD
Sbjct: 188 ERTREGNDLYHEMIESGVINL-KDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQ 246
Query: 239 EGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITS 298
EG+DVL FIDNI+R+T AG+EVSALLGR+PSAVGYQPTLA +MG +QERI +TKKGSITS
Sbjct: 247 EGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITS 306
Query: 299 IQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKK 358
+QA+YVPADDLTDP+PATTFAHLD+T VLSR IA LGIYPA+DPLDSTSR +DP IVG +
Sbjct: 307 VQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSE 366
Query: 359 HYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVARARKMQRFLSQPFHVAEVFTG 418
HY +AR VQ LQ YK L+DII+ILGMDELS EDKL V+RARK+QRFLSQPF VAEVFTG
Sbjct: 367 HYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTG 426
Query: 419 KSGKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAIKKSKKLMK 467
GK V LK+T+ GF I +G+ D++PEQAFYMVG I+EA+ K+ KL +
Sbjct: 427 HMGKLVPLKETIKGFQQILAGDYDHLPEQAFYMVGPIEEAVAKADKLAE 475
>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|E Chain E, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|F Chain F, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 462
Score = 577 bits (1487), Expect = e-165, Method: Compositional matrix adjust.
Identities = 287/469 (61%), Positives = 350/469 (74%), Gaps = 11/469 (2%)
Query: 1 MSDGKIIQCIGSVVDVEFPHNMVPKIYNALKIENSE---LTLEVQQQLGDGIVRTIVLGT 57
M+ G+IIQ +G VVD++F +P IYNA+ IE + LT+E LGD +VR + + +
Sbjct: 1 MNKGRIIQVMGPVVDIQFESGQLPDIYNAITIERPQGGTLTVEAAVHLGDNVVRCVAMAS 60
Query: 58 SEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPXXXX 117
++GL RG +TG PI +PVGKATLGR+ NVLG+PIDE+G ++ + IHR P
Sbjct: 61 TDGLVRGLEAVDTGAPISVPVGKATLGRVFNVLGEPIDEQGEVNAEERHPIHRPAPEFEE 120
Query: 118 XXXXXXXXXTGIKVIDLICPFSXXXXXXXXXXXXXXXXXNMMELINNIAKAHSGLSVFTG 177
TGIKVIDL+ P++ + ELINN+A+ H GLSVF G
Sbjct: 121 LSTADEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAQEHGGLSVFAG 180
Query: 178 VGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFR 237
VGERTREGND YHEM ++ V+ SK SMV+GQMNEP G RLRVALTGLT+AE FR
Sbjct: 181 VGERTREGNDLYHEMKDSGVI-------SKTSMVFGQMNEPPGARLRVALTGLTMAEYFR 233
Query: 238 D-EGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSI 296
D EG+DVL FIDNI+R+T AG+EVSALLGRMPSAVGYQPTLA EMG LQERI STKKGSI
Sbjct: 234 DREGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSI 293
Query: 297 TSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVG 356
TSIQA+YVPADD TDP+PATTFAHLD+T L R +A +GIYPA+DPL STSR L P +VG
Sbjct: 294 TSIQAIYVPADDYTDPAPATTFAHLDATTNLERKLAEMGIYPAVDPLASTSRILSPAVVG 353
Query: 357 KKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVARARKMQRFLSQPFHVAEVF 416
++HY++AR VQ LQRY +L+DII+ILGMDELS EDKL+VARARK+QRFLSQPFHVAE F
Sbjct: 354 EEHYRVARGVQQVLQRYNDLQDIIAILGMDELSDEDKLIVARARKIQRFLSQPFHVAEQF 413
Query: 417 TGKSGKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAIKKSKKL 465
TG GKYV +K+T+ GF I G+ DN+PE+AFYMVGTIDEA++K+KKL
Sbjct: 414 TGMPGKYVPVKETVRGFKEILEGKHDNLPEEAFYMVGTIDEAVEKAKKL 462
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 576 bits (1485), Expect = e-165, Method: Compositional matrix adjust.
Identities = 292/469 (62%), Positives = 352/469 (75%), Gaps = 5/469 (1%)
Query: 2 SDGKIIQCIGSVVDVEFPHNMVPKIYNALKIENSE--LTLEVQQQLGDGIVRTIVLGTSE 59
+ G+I+ IG+VVDV+F + P I NAL+++ E L LEV Q LG+ VRTI + +E
Sbjct: 13 TTGRIVAVIGAVVDVQFDEGL-PPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTE 71
Query: 60 GLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPXXXXXX 119
GL RG V ++G PI IPVG TLGRI+NV+G+PIDE+G I K ++IH P
Sbjct: 72 GLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMS 131
Query: 120 XXXXXXXTGIKVIDLICPFSXXXXXXXXXXXXXXXXXNMMELINNIAKAHSGLSVFTGVG 179
TGIKV+DL+ P++ +MELINN+AKAH G SVF GVG
Sbjct: 132 VEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVG 191
Query: 180 ERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRD- 238
ERTREGND YHEMIE+ V+NL K SKV++VYGQMNEP G R RVALTGLT+AE FRD
Sbjct: 192 ERTREGNDLYHEMIESGVINL-KDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQ 250
Query: 239 EGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITS 298
EG+DVL FIDNI+R+T AG+EVSALLGR+PSAVGYQPTLA +MG +QERI +TKKGSITS
Sbjct: 251 EGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITS 310
Query: 299 IQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKK 358
+QA+ VPADDLTDP+PATTFAHLD+T VLSR IA LGIYPA+DPLDSTSR +DP IVG +
Sbjct: 311 VQAIXVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSE 370
Query: 359 HYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVARARKMQRFLSQPFHVAEVFTG 418
HY +AR VQ LQ YK L+DII+ILGMDELS EDKL V+RARK+QRFLSQPF VAEVFTG
Sbjct: 371 HYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTG 430
Query: 419 KSGKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAIKKSKKLMK 467
GK V LK+T+ GF I +GE D++PEQAFYMVG I+EA+ K+ KL +
Sbjct: 431 HLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLAE 479
>pdb|4B2Q|D Chain D, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|DD Chain d, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 470
Score = 566 bits (1459), Expect = e-162, Method: Compositional matrix adjust.
Identities = 286/465 (61%), Positives = 344/465 (73%), Gaps = 5/465 (1%)
Query: 4 GKIIQCIGSVVDVEFPHNMVPKIYNALKIENSE--LTLEVQQQLGDGIVRTIVLGTSEGL 61
GK+ IG++VDV F + +P I NAL+I+ + L LEV Q LG+ VRTI + +EGL
Sbjct: 6 GKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGL 65
Query: 62 RRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPXXXXXXXX 121
RG V +TG PI +PVG+ TLGRIINV+G+PIDE+G I +K IH PP
Sbjct: 66 VRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTS 125
Query: 122 XXXXXTGIKVIDLICPFSXXXXXXXXXXXXXXXXXNMMELINNIAKAHSGLSVFTGVGER 181
TGIKV+DL+ P++ + ELINNIAKAH G SVFTGVGER
Sbjct: 126 AEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGER 185
Query: 182 TREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDE-G 240
TREGND Y EM E V+NL+ +SKV++V+GQMNEP G R RVALTGLTIAE FRDE G
Sbjct: 186 TREGNDLYREMKETGVINLEG--ESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEG 243
Query: 241 KDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQ 300
+DVL FIDNI+R+T AG+EVSALLGR+PSAVGYQPTLA +MG LQERI +TKKGS+TS+Q
Sbjct: 244 QDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSVTSVQ 303
Query: 301 AVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHY 360
AVYVPADDLTDP+PATTFAHLD+T VLSR I+ LGIYPA+DPLDS SR LD +VG++HY
Sbjct: 304 AVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAVVGQEHY 363
Query: 361 KIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVARARKMQRFLSQPFHVAEVFTGKS 420
+A VQ TLQ YK L+DII+ILGMDELS +DKL V RARK+QRFLSQPF VAEVFTG
Sbjct: 364 DVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQRFLSQPFAVAEVFTGIP 423
Query: 421 GKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAIKKSKKL 465
GK V LKDT+ F + G+ DNIPE AFYMVG I++ + K++KL
Sbjct: 424 GKLVRLKDTVASFKAVLEGKYDNIPEHAFYMVGGIEDVVAKAEKL 468
>pdb|2XOK|D Chain D, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|E Chain E, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|F Chain F, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 511
Score = 560 bits (1444), Expect = e-160, Method: Compositional matrix adjust.
Identities = 283/459 (61%), Positives = 339/459 (73%), Gaps = 5/459 (1%)
Query: 4 GKIIQCIGSVVDVEFPHNMVPKIYNALKIENSE--LTLEVQQQLGDGIVRTIVLGTSEGL 61
GK+ IG++VDV F + +P I NAL+I+ + L LEV Q LG+ VRTI + +EGL
Sbjct: 44 GKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGL 103
Query: 62 RRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPXXXXXXXX 121
RG V +TG PI +PVG+ TLGRIINV+G+PIDE+G I +K IH PP
Sbjct: 104 VRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTS 163
Query: 122 XXXXXTGIKVIDLICPFSXXXXXXXXXXXXXXXXXNMMELINNIAKAHSGLSVFTGVGER 181
TGIKV+DL+ P++ + ELINNIAKAH G SVFTGVGER
Sbjct: 164 AEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGER 223
Query: 182 TREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDE-G 240
TREGND Y EM E V+NL+ +SKV++V+GQMNEP G R RVALTGLTIAE FRDE G
Sbjct: 224 TREGNDLYREMKETGVINLEG--ESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEG 281
Query: 241 KDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQ 300
+DVL FIDNI+R+T AG+EVSALLGR+PSAVGYQPTLA +MG LQERI +TKKGS+TS+Q
Sbjct: 282 QDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSVTSVQ 341
Query: 301 AVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHY 360
AVYVPADDLTDP+PATTFAHLD+T VLSR I+ LGIYPA+DPLDS SR LD +VG++HY
Sbjct: 342 AVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAVVGQEHY 401
Query: 361 KIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVARARKMQRFLSQPFHVAEVFTGKS 420
+A VQ TLQ YK L+DII+ILGMDELS +DKL V RARK+QRFLSQPF VAEVFTG
Sbjct: 402 DVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQRFLSQPFAVAEVFTGIP 461
Query: 421 GKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAI 459
GK V LKDT+ F + G+ DNIPE AFYMVG I++ +
Sbjct: 462 GKLVRLKDTVASFKAVLEGKYDNIPEHAFYMVGGIEDVV 500
>pdb|3FKS|D Chain D, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|E Chain E, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|F Chain F, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|M Chain M, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|N Chain N, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|O Chain O, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|V Chain V, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|W Chain W, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|X Chain X, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3OE7|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEE|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OFN|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 484
Score = 560 bits (1442), Expect = e-160, Method: Compositional matrix adjust.
Identities = 283/459 (61%), Positives = 339/459 (73%), Gaps = 5/459 (1%)
Query: 4 GKIIQCIGSVVDVEFPHNMVPKIYNALKIENSE--LTLEVQQQLGDGIVRTIVLGTSEGL 61
GK+ IG++VDV F + +P I NAL+I+ + L LEV Q LG+ VRTI + +EGL
Sbjct: 17 GKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGL 76
Query: 62 RRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPXXXXXXXX 121
RG V +TG PI +PVG+ TLGRIINV+G+PIDE+G I +K IH PP
Sbjct: 77 VRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTS 136
Query: 122 XXXXXTGIKVIDLICPFSXXXXXXXXXXXXXXXXXNMMELINNIAKAHSGLSVFTGVGER 181
TGIKV+DL+ P++ + ELINNIAKAH G SVFTGVGER
Sbjct: 137 AEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGER 196
Query: 182 TREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDE-G 240
TREGND Y EM E V+NL+ +SKV++V+GQMNEP G R RVALTGLTIAE FRDE G
Sbjct: 197 TREGNDLYREMKETGVINLEG--ESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEG 254
Query: 241 KDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQ 300
+DVL FIDNI+R+T AG+EVSALLGR+PSAVGYQPTLA +MG LQERI +TKKGS+TS+Q
Sbjct: 255 QDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSVTSVQ 314
Query: 301 AVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHY 360
AVYVPADDLTDP+PATTFAHLD+T VLSR I+ LGIYPA+DPLDS SR LD +VG++HY
Sbjct: 315 AVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAVVGQEHY 374
Query: 361 KIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVARARKMQRFLSQPFHVAEVFTGKS 420
+A VQ TLQ YK L+DII+ILGMDELS +DKL V RARK+QRFLSQPF VAEVFTG
Sbjct: 375 DVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQRFLSQPFAVAEVFTGIP 434
Query: 421 GKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAI 459
GK V LKDT+ F + G+ DNIPE AFYMVG I++ +
Sbjct: 435 GKLVRLKDTVASFKAVLEGKYDNIPEHAFYMVGGIEDVV 473
>pdb|2HLD|D Chain D, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|E Chain E, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|F Chain F, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|M Chain M, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|N Chain N, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|O Chain O, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|V Chain V, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|W Chain W, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|X Chain X, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2WPD|D Chain D, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|E Chain E, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|F Chain F, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3ZRY|D Chain D, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|E Chain E, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|F Chain F, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|D Chain D, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|E Chain E, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|F Chain F, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|N Chain N, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|O Chain O, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|P Chain P, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 478
Score = 560 bits (1442), Expect = e-160, Method: Compositional matrix adjust.
Identities = 283/459 (61%), Positives = 339/459 (73%), Gaps = 5/459 (1%)
Query: 4 GKIIQCIGSVVDVEFPHNMVPKIYNALKIENSE--LTLEVQQQLGDGIVRTIVLGTSEGL 61
GK+ IG++VDV F + +P I NAL+I+ + L LEV Q LG+ VRTI + +EGL
Sbjct: 11 GKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGL 70
Query: 62 RRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPXXXXXXXX 121
RG V +TG PI +PVG+ TLGRIINV+G+PIDE+G I +K IH PP
Sbjct: 71 VRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTS 130
Query: 122 XXXXXTGIKVIDLICPFSXXXXXXXXXXXXXXXXXNMMELINNIAKAHSGLSVFTGVGER 181
TGIKV+DL+ P++ + ELINNIAKAH G SVFTGVGER
Sbjct: 131 AEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGER 190
Query: 182 TREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDE-G 240
TREGND Y EM E V+NL+ +SKV++V+GQMNEP G R RVALTGLTIAE FRDE G
Sbjct: 191 TREGNDLYREMKETGVINLEG--ESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEG 248
Query: 241 KDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQ 300
+DVL FIDNI+R+T AG+EVSALLGR+PSAVGYQPTLA +MG LQERI +TKKGS+TS+Q
Sbjct: 249 QDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSVTSVQ 308
Query: 301 AVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHY 360
AVYVPADDLTDP+PATTFAHLD+T VLSR I+ LGIYPA+DPLDS SR LD +VG++HY
Sbjct: 309 AVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAVVGQEHY 368
Query: 361 KIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVARARKMQRFLSQPFHVAEVFTGKS 420
+A VQ TLQ YK L+DII+ILGMDELS +DKL V RARK+QRFLSQPF VAEVFTG
Sbjct: 369 DVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQRFLSQPFAVAEVFTGIP 428
Query: 421 GKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAI 459
GK V LKDT+ F + G+ DNIPE AFYMVG I++ +
Sbjct: 429 GKLVRLKDTVASFKAVLEGKYDNIPEHAFYMVGGIEDVV 467
>pdb|4B2Q|E Chain E, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|F Chain F, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|EE Chain e, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|FF Chain f, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 473
Score = 558 bits (1439), Expect = e-159, Method: Compositional matrix adjust.
Identities = 283/459 (61%), Positives = 339/459 (73%), Gaps = 5/459 (1%)
Query: 4 GKIIQCIGSVVDVEFPHNMVPKIYNALKIENSE--LTLEVQQQLGDGIVRTIVLGTSEGL 61
GK+ IG++VDV F + +P I NAL+I+ + L LEV Q LG+ VRTI + +EGL
Sbjct: 6 GKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGL 65
Query: 62 RRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPXXXXXXXX 121
RG V +TG PI +PVG+ TLGRIINV+G+PIDE+G I +K IH PP
Sbjct: 66 VRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTS 125
Query: 122 XXXXXTGIKVIDLICPFSXXXXXXXXXXXXXXXXXNMMELINNIAKAHSGLSVFTGVGER 181
TGIKV+DL+ P++ + ELINNIAKAH G SVFTGVGER
Sbjct: 126 AEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGER 185
Query: 182 TREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDE-G 240
TREGND Y EM E V+NL+ +SKV++V+GQMNEP G R RVALTGLTIAE FRDE G
Sbjct: 186 TREGNDLYREMKETGVINLEG--ESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEG 243
Query: 241 KDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQ 300
+DVL FIDNI+R+T AG+EVSALLGR+PSAVGYQPTLA +MG LQERI +TKKGS+TS+Q
Sbjct: 244 QDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSVTSVQ 303
Query: 301 AVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHY 360
AVYVPADDLTDP+PATTFAHLD+T VLSR I+ LGIYPA+DPLDS SR LD +VG++HY
Sbjct: 304 AVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAVVGQEHY 363
Query: 361 KIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVARARKMQRFLSQPFHVAEVFTGKS 420
+A VQ TLQ YK L+DII+ILGMDELS +DKL V RARK+QRFLSQPF VAEVFTG
Sbjct: 364 DVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQRFLSQPFAVAEVFTGIP 423
Query: 421 GKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAI 459
GK V LKDT+ F + G+ DNIPE AFYMVG I++ +
Sbjct: 424 GKLVRLKDTVASFKAVLEGKYDNIPEHAFYMVGGIEDVV 462
>pdb|3OEH|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
Length = 484
Score = 558 bits (1437), Expect = e-159, Method: Compositional matrix adjust.
Identities = 282/459 (61%), Positives = 338/459 (73%), Gaps = 5/459 (1%)
Query: 4 GKIIQCIGSVVDVEFPHNMVPKIYNALKIENSE--LTLEVQQQLGDGIVRTIVLGTSEGL 61
GK+ IG++VDV F + +P I NAL+I+ + L LEV Q LG+ VRTI + +EGL
Sbjct: 17 GKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGL 76
Query: 62 RRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPXXXXXXXX 121
RG V +TG PI +PVG+ TLGRIINV+G+PIDE+G I +K IH PP
Sbjct: 77 VRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTS 136
Query: 122 XXXXXTGIKVIDLICPFSXXXXXXXXXXXXXXXXXNMMELINNIAKAHSGLSVFTGVGER 181
TGIKV+DL+ P++ + ELINNIAKAH G SVFTGVGER
Sbjct: 137 AEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGER 196
Query: 182 TREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDE-G 240
TREGND Y EM E V+NL+ +SKV++V+GQMNEP G R RVALTGLTIAE FRDE G
Sbjct: 197 TREGNDLYREMKETGVINLEG--ESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEG 254
Query: 241 KDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQ 300
+DVL FIDNI+R+T AG+EVSALLGR+PSA GYQPTLA +MG LQERI +TKKGS+TS+Q
Sbjct: 255 QDVLLFIDNIFRFTQAGSEVSALLGRIPSAFGYQPTLATDMGLLQERITTTKKGSVTSVQ 314
Query: 301 AVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHY 360
AVYVPADDLTDP+PATTFAHLD+T VLSR I+ LGIYPA+DPLDS SR LD +VG++HY
Sbjct: 315 AVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAVVGQEHY 374
Query: 361 KIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVARARKMQRFLSQPFHVAEVFTGKS 420
+A VQ TLQ YK L+DII+ILGMDELS +DKL V RARK+QRFLSQPF VAEVFTG
Sbjct: 375 DVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQRFLSQPFAVAEVFTGIP 434
Query: 421 GKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAI 459
GK V LKDT+ F + G+ DNIPE AFYMVG I++ +
Sbjct: 435 GKLVRLKDTVASFKAVLEGKYDNIPEHAFYMVGGIEDVV 473
>pdb|1FX0|B Chain B, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|B Chain B, Crystal Structure Of Spinach Chloroplast F1-atpase
Complexed With Tentoxin
Length = 498
Score = 538 bits (1386), Expect = e-153, Method: Compositional matrix adjust.
Identities = 281/470 (59%), Positives = 343/470 (72%), Gaps = 8/470 (1%)
Query: 4 GKIIQCIGSVVDVEFPHNMVPKIYNALKIENSE-------LTLEVQQQLGDGIVRTIVLG 56
G+I Q IG V++V FP +P IYNAL ++ + +T EVQQ LG+ VR + +
Sbjct: 21 GRIAQIIGPVLNVAFPPGKMPNIYNALIVKGRDTAGQPMNVTCEVQQLLGNNRVRAVAMS 80
Query: 57 TSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPXXX 116
++GL RG V +TG P+ +PVG TLGRI NVLG+P+D + + S IHR+ P
Sbjct: 81 ATDGLTRGMEVIDTGAPLSVPVGGPTLGRIFNVLGEPVDNLRPVDTRTTSPIHRSAPAFT 140
Query: 117 XXXXXXXXXXTGIKVIDLICPFSXXXXXXXXXXXXXXXXXNMMELINNIAKAHSGLSVFT 176
TGIKV++L+ P+ +MELINNIAKAH G+SVF
Sbjct: 141 QLDTKLSIFETGIKVVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG 200
Query: 177 GVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGF 236
GVGERTREGND Y EM E+ V+N +SKV++VYGQMNEP G R+RV LT LT+AE F
Sbjct: 201 GVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYF 260
Query: 237 RD-EGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGS 295
RD +DVL FIDNI+R+ AG+EVSALLGRMPSAVGYQPTL+ EMG LQERI STK+GS
Sbjct: 261 RDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKEGS 320
Query: 296 ITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIV 355
ITSIQAVYVPADDLTDP+PATTFAHLD+T VLSR +A+ GIYPA+DPLDSTS L P IV
Sbjct: 321 ITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIV 380
Query: 356 GKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVARARKMQRFLSQPFHVAEV 415
G++HY+IA+ V+ TLQRYKEL+DII+ILG+DELS ED+L VARARK++RFLSQPF VAEV
Sbjct: 381 GEEHYEIAQRVKETLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEV 440
Query: 416 FTGKSGKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAIKKSKKL 465
FTG GKYV L +T+ GF LI SGELD++PEQAFY+VG IDEA K+ L
Sbjct: 441 FTGSPGKYVGLAETIRGFQLILSGELDSLPEQAFYLVGNIDEATAKAMNL 490
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 533 bits (1372), Expect = e-151, Method: Compositional matrix adjust.
Identities = 272/476 (57%), Positives = 344/476 (72%), Gaps = 18/476 (3%)
Query: 1 MSDGKIIQCIGSVVDVEFPHNMVPKIYNALKIENS---------ELTLEVQQQLGDGIVR 51
M+ G++IQ +G VVDV+F + +P IYNALKI++ +LTLEV LGD VR
Sbjct: 1 MTRGRVIQVMGPVVDVKFENGHLPAIYNALKIQHKARNENEVDIDLTLEVALHLGDDTVR 60
Query: 52 TIVLGTSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNI-SNKYVSSIHR 110
TI + +++GL RG V +TG PI +PVG+ TLGR+ NVLG+PID +G+I ++ IHR
Sbjct: 61 TIAMASTDGLIRGMEVIDTGAPISVPVGQVTLGRVFNVLGEPIDLEGDIPADARRDPIHR 120
Query: 111 TPPXXXXXXXXXXXXXTGIKVIDLICPFSXXXXXXXXXXXXXXXXXNMMELINNIAKAHS 170
P TGIKV+DL+ P+ + ELI+NIA+ H
Sbjct: 121 PAPKFEELATEVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHG 180
Query: 171 GLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGL 230
G+SVF GVGERTREGND YHEM ++ V+ SK +MV+GQMNEP G R+RVALTGL
Sbjct: 181 GISVFAGVGERTREGNDLYHEMKDSGVI-------SKTAMVFGQMNEPPGARMRVALTGL 233
Query: 231 TIAEGFRDE-GKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIA 289
T+AE FRDE G+D L FIDNI+R+T AG+EVSALLGRMPSA+GYQPTLA EMG LQERI
Sbjct: 234 TMAEYFRDEQGQDGLLFIDNIFRFTQAGSEVSALLGRMPSAIGYQPTLATEMGQLQERIT 293
Query: 290 STKKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQ 349
ST KGSITSIQA+YVPADD TDP+PATTF+HLD+T L R +A +GIYPA+DPL STSR
Sbjct: 294 STAKGSITSIQAIYVPADDYTDPAPATTFSHLDATTNLERKLAEMGIYPAVDPLVSTSRA 353
Query: 350 LDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVARARKMQRFLSQP 409
L P IVG++HY++AR VQ TL+RYKEL+DII+ILGMDELS EDKL+V RAR++Q FLSQ
Sbjct: 354 LAPEIVGEEHYQVARKVQQTLERYKELQDIIAILGMDELSDEDKLVVHRARRIQFFLSQN 413
Query: 410 FHVAEVFTGKSGKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAIKKSKKL 465
FHVAE FTG+ G YV +K+T+ GF I G+ D++PE F +VG I+E ++K+K +
Sbjct: 414 FHVAEQFTGQPGSYVPVKETVRGFKEILEGKYDHLPEDRFRLVGRIEEVVEKAKAM 469
>pdb|2OBL|A Chain A, Structural And Biochemical Analysis Of A Prototypical
Atpase From The Type Iii Secretion System Of Pathogenic
Bacteria
pdb|2OBM|A Chain A, Structural And Biochemical Analysis Of A Prototypical
Atpase From The Type Iii Secretion System Of Pathogenic
Bacteria
Length = 347
Score = 115 bits (289), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 157/342 (45%), Gaps = 28/342 (8%)
Query: 76 IPVGKATLGRIINVLGDPIDEKGNISNKYV---SSIHRTPPXXXXXXXXXXXXXTGIKVI 132
I VG A LGR+I+ +G P++ NI Y+ S++ PP G++ I
Sbjct: 5 IRVGDALLGRLIDGIGRPMES--NIVAPYLPFERSLYAEPPDPLLRQVIDQPFILGVRAI 62
Query: 133 D--LICPFSXXXXXXXXXXXXXXXXXNMMELINNIAKAHSGLSVFTGVGERTREGNDFYH 190
D L C ++ +I N A A + V +GER RE N+F
Sbjct: 63 DGLLTCGIGQRIGIFAGSGVGKS---TLLGMICNGASAD--IIVLALIGERGREVNEFLA 117
Query: 191 EMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNI 250
+ ++ + SK +V + P+ R++ A T TIAE FRD+GK+VL +D++
Sbjct: 118 LLPQSTL--------SKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSV 169
Query: 251 YRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQAVYVPADDLT 310
RY A +V G G+ P++ + L ER KGSIT+I V + +D++
Sbjct: 170 TRYARAARDVGLASGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN 229
Query: 311 DPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTL 370
DP + LD +VL+R++A +PAID S SR + +V +H + A + +
Sbjct: 230 DPIGDEVRSILDGHIVLTRELAEENHFPAIDIGLSASRVMHN-VVTSEHLRAAAECKKLI 288
Query: 371 QRYKELRDIISI----LGMDELSPEDKLLVARARKMQRFLSQ 408
YK +I I +G D PE + + +Q F+ Q
Sbjct: 289 ATYKNPELLIRIGEYTMGQD---PEADKAIKNRKLIQNFIQQ 327
>pdb|2DPY|A Chain A, Crystal Structure Of The Flagellar Type Iii Atpase Flii
pdb|2DPY|B Chain B, Crystal Structure Of The Flagellar Type Iii Atpase Flii
Length = 438
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/319 (28%), Positives = 144/319 (45%), Gaps = 33/319 (10%)
Query: 76 IPVGKATLGRIINVLGDPID--------EKGNISNKYVSSIHRTPPXXXXXXXXXXXXXT 127
+P+G A LGR+++ G P+D E G + + + RTP T
Sbjct: 92 LPLGPALLGRVLDGGGKPLDGLPAPDTLETGALITPPFNPLQRTP--------IEHVLDT 143
Query: 128 GIKVIDLICPFSXXXXXXXXXXXXXXXXXNMMELINNIAKAHSGLSVFTG-VGERTREGN 186
G++ I+ + L+ +A+ + G +GER RE
Sbjct: 144 GVRAINALLTVGRGQRMGLFAGSGVGKSV----LLGMMARYTRADVIVVGLIGERGREVK 199
Query: 187 DFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGN-RLRVALTGLTIAEGFRDEGKDVLF 245
DF + N+ P+ S+V + S R++ A IAE FRD G+ VL
Sbjct: 200 DF--------IENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLL 251
Query: 246 FIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAST--KKGSITSIQAVY 303
+D++ RY +A E++ +G P+ GY P++ ++ L ER + GSIT+ V
Sbjct: 252 IMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVL 311
Query: 304 VPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIA 363
DD DP + A LD +VLSR +A G YPAID S SR + LI ++HY
Sbjct: 312 TEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALIT-EQHYARV 370
Query: 364 RLVQSTLQRYKELRDIISI 382
RL + L ++ RD++S+
Sbjct: 371 RLFKQLLSSFQRNRDLVSV 389
>pdb|3SDZ|A Chain A, Structural Characterization Of The Subunit A Mutant F427w
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 117/281 (41%), Gaps = 27/281 (9%)
Query: 174 VFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIA 233
++ G GER E D E + K KP + ++ N P R TG+TIA
Sbjct: 257 IYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIA 316
Query: 234 EGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAST-- 291
E FRD G DV D+ R+ A E+S L MP GY LA ++ ER
Sbjct: 317 EYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVT 376
Query: 292 -----KKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDST 346
+ GS++ I AV P D ++P T + L D+A +PAI+ L S
Sbjct: 377 LGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHWPAINWLTSY 436
Query: 347 S-----------RQLDPLIVGKKHYKIAR-LVQSTLQRYKELRDIISILGMDELSPEDK- 393
S + +DP +K R + LQ+ EL++I+ I+G D L ++
Sbjct: 437 SLYVDAVKDWWHKNIDP------EWKAMRDKAMALLQKESELQEIVRIVGPDALPERERA 490
Query: 394 -LLVARARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGF 433
LLVAR + F + + + ++ LN +
Sbjct: 491 ILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLLNFY 531
>pdb|3M4Y|A Chain A, Structural Characterization Of The Subunit A Mutant P235a
Of The A-Atp Synthase
Length = 588
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 117/281 (41%), Gaps = 27/281 (9%)
Query: 174 VFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIA 233
++ G GER E D E + K KP + ++ N P R TG+TIA
Sbjct: 257 IYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIA 316
Query: 234 EGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAST-- 291
E FRD G DV D+ R+ A E+S L MP GY LA ++ ER
Sbjct: 317 EYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVT 376
Query: 292 -----KKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDST 346
+ GS++ I AV P D ++P T + L D+A +PAI+ L S
Sbjct: 377 LGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSY 436
Query: 347 S-----------RQLDPLIVGKKHYKIAR-LVQSTLQRYKELRDIISILGMDELSPEDK- 393
S + +DP +K R + LQ+ EL++I+ I+G D L ++
Sbjct: 437 SLYVDAVKDWWHKNIDP------EWKAMRDKAMALLQKESELQEIVRIVGPDALPERERA 490
Query: 394 -LLVARARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGF 433
LLVAR + F + + + ++ LN +
Sbjct: 491 ILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLLNFY 531
>pdb|3QJY|A Chain A, Crystal Structure Of P-Loop G234a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 117/281 (41%), Gaps = 27/281 (9%)
Query: 174 VFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIA 233
++ G GER E D E + K KP + ++ N P R TG+TIA
Sbjct: 257 IYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIA 316
Query: 234 EGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAST-- 291
E FRD G DV D+ R+ A E+S L MP GY LA ++ ER
Sbjct: 317 EYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVT 376
Query: 292 -----KKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDST 346
+ GS++ I AV P D ++P T + L D+A +PAI+ L S
Sbjct: 377 LGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSY 436
Query: 347 S-----------RQLDPLIVGKKHYKIAR-LVQSTLQRYKELRDIISILGMDELSPEDK- 393
S + +DP +K R + LQ+ EL++I+ I+G D L ++
Sbjct: 437 SLYVDAVKDWWHKNIDP------EWKAMRDKAMALLQKESELQEIVRIVGPDALPERERA 490
Query: 394 -LLVARARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGF 433
LLVAR + F + + + ++ LN +
Sbjct: 491 ILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLLNFY 531
>pdb|3QIA|A Chain A, Crystal Structure Of P-Loop G237a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 117/281 (41%), Gaps = 27/281 (9%)
Query: 174 VFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIA 233
++ G GER E D E + K KP + ++ N P R TG+TIA
Sbjct: 257 IYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIA 316
Query: 234 EGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAST-- 291
E FRD G DV D+ R+ A E+S L MP GY LA ++ ER
Sbjct: 317 EYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVT 376
Query: 292 -----KKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDST 346
+ GS++ I AV P D ++P T + L D+A +PAI+ L S
Sbjct: 377 LGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSY 436
Query: 347 S-----------RQLDPLIVGKKHYKIAR-LVQSTLQRYKELRDIISILGMDELSPEDK- 393
S + +DP +K R + LQ+ EL++I+ I+G D L ++
Sbjct: 437 SLYVDAVKDWWHKNIDP------EWKAMRDKAMALLQKESELQEIVRIVGPDALPERERA 490
Query: 394 -LLVARARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGF 433
LLVAR + F + + + ++ LN +
Sbjct: 491 ILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLLNFY 531
>pdb|3QG1|A Chain A, Crystal Structure Of P-Loop G239a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 117/281 (41%), Gaps = 27/281 (9%)
Query: 174 VFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIA 233
++ G GER E D E + K KP + ++ N P R TG+TIA
Sbjct: 257 IYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIA 316
Query: 234 EGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAST-- 291
E FRD G DV D+ R+ A E+S L MP GY LA ++ ER
Sbjct: 317 EYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVT 376
Query: 292 -----KKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDST 346
+ GS++ I AV P D ++P T + L D+A +PAI+ L S
Sbjct: 377 LGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSY 436
Query: 347 S-----------RQLDPLIVGKKHYKIAR-LVQSTLQRYKELRDIISILGMDELSPEDK- 393
S + +DP +K R + LQ+ EL++I+ I+G D L ++
Sbjct: 437 SLYVDAVKDWWHKNIDP------EWKAMRDKAMALLQKESELQEIVRIVGPDALPERERA 490
Query: 394 -LLVARARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGF 433
LLVAR + F + + + ++ LN +
Sbjct: 491 ILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLLNFY 531
>pdb|3MFY|A Chain A, Structural Characterization Of The Subunit A Mutant F236a
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 117/281 (41%), Gaps = 27/281 (9%)
Query: 174 VFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIA 233
++ G GER E D E + K KP + ++ N P R TG+TIA
Sbjct: 257 IYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIA 316
Query: 234 EGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAST-- 291
E FRD G DV D+ R+ A E+S L MP GY LA ++ ER
Sbjct: 317 EYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVT 376
Query: 292 -----KKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDST 346
+ GS++ I AV P D ++P T + L D+A +PAI+ L S
Sbjct: 377 LGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSY 436
Query: 347 S-----------RQLDPLIVGKKHYKIAR-LVQSTLQRYKELRDIISILGMDELSPEDK- 393
S + +DP +K R + LQ+ EL++I+ I+G D L ++
Sbjct: 437 SLYVDAVKDWWHKNIDP------EWKAMRDKAMALLQKESELQEIVRIVGPDALPERERA 490
Query: 394 -LLVARARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGF 433
LLVAR + F + + + ++ LN +
Sbjct: 491 ILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLLNFY 531
>pdb|3ND8|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Of The A1ao Atp Synthase
Length = 588
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 117/281 (41%), Gaps = 27/281 (9%)
Query: 174 VFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIA 233
++ G GER E D E + K KP + ++ N P R TG+TIA
Sbjct: 257 IYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIA 316
Query: 234 EGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAST-- 291
E FRD G DV D+ R+ A E+S L MP GY LA ++ ER
Sbjct: 317 EYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVT 376
Query: 292 -----KKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDST 346
+ GS++ I AV P D ++P T + L D+A +PAI+ L S
Sbjct: 377 LGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSY 436
Query: 347 S-----------RQLDPLIVGKKHYKIAR-LVQSTLQRYKELRDIISILGMDELSPEDK- 393
S + +DP +K R + LQ+ EL++I+ I+G D L ++
Sbjct: 437 SLYVDAVKDWWHKNIDP------EWKAMRDKAMALLQKESELQEIVRIVGPDALPERERA 490
Query: 394 -LLVARARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGF 433
LLVAR + F + + + ++ LN +
Sbjct: 491 ILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLLNFY 531
>pdb|1VDZ|A Chain A, Crystal Structure Of A-Type Atpase Catalytic Subunit A
From Pyrococcus Horikoshii Ot3
Length = 588
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 117/281 (41%), Gaps = 27/281 (9%)
Query: 174 VFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIA 233
++ G GER E D E + K KP + ++ N P R TG+TIA
Sbjct: 257 IYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIA 316
Query: 234 EGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAST-- 291
E FRD G DV D+ R+ A E+S L MP GY LA ++ ER
Sbjct: 317 EYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVT 376
Query: 292 -----KKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDST 346
+ GS++ I AV P D ++P T + L D+A +PAI+ L S
Sbjct: 377 LGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSY 436
Query: 347 S-----------RQLDPLIVGKKHYKIAR-LVQSTLQRYKELRDIISILGMDELSPEDK- 393
S + +DP +K R + LQ+ EL++I+ I+G D L ++
Sbjct: 437 SLYVDAVKDWWHKNIDP------EWKAMRDKAMALLQKESELQEIVRIVGPDALPERERA 490
Query: 394 -LLVARARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGF 433
LLVAR + F + + + ++ LN +
Sbjct: 491 ILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLLNFY 531
>pdb|3IKJ|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Mutant S238a Of The A1ao Atp
Synthase
Length = 588
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 117/281 (41%), Gaps = 27/281 (9%)
Query: 174 VFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIA 233
++ G GER E D E + K KP + ++ N P R TG+TIA
Sbjct: 257 IYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIA 316
Query: 234 EGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAST-- 291
E FRD G DV D+ R+ A E+S L MP GY LA ++ ER
Sbjct: 317 EYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVT 376
Query: 292 -----KKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDST 346
+ GS++ I AV P D ++P T + L D+A +PAI+ L S
Sbjct: 377 LGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSY 436
Query: 347 S-----------RQLDPLIVGKKHYKIAR-LVQSTLQRYKELRDIISILGMDELSPEDK- 393
S + +DP +K R + LQ+ EL++I+ I+G D L ++
Sbjct: 437 SLYVDAVKDWWHKNIDP------EWKAMRDKAMALLQKESELQEIVRIVGPDALPERERA 490
Query: 394 -LLVARARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGF 433
LLVAR + F + + + ++ LN +
Sbjct: 491 ILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLLNFY 531
>pdb|3I4L|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With Amp-Pnp Of The A1ao Atp
Synthase
pdb|3I72|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With So4 Of The A1ao Atp Synthase
pdb|3I73|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With Adp Of The A1ao Atp Synthase
pdb|3P20|A Chain A, Crystal Structure Of Vanadate Bound Subunit A Of The A1ao
Atp Synthase
Length = 588
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 117/281 (41%), Gaps = 27/281 (9%)
Query: 174 VFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIA 233
++ G GER E D E + K KP + ++ N P R TG+TIA
Sbjct: 257 IYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIA 316
Query: 234 EGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAST-- 291
E FRD G DV D+ R+ A E+S L MP GY LA ++ ER
Sbjct: 317 EYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVT 376
Query: 292 -----KKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDST 346
+ GS++ I AV P D ++P T + L D+A +PAI+ L S
Sbjct: 377 LGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSY 436
Query: 347 S-----------RQLDPLIVGKKHYKIAR-LVQSTLQRYKELRDIISILGMDELSPEDK- 393
S + +DP +K R + LQ+ EL++I+ I+G D L ++
Sbjct: 437 SLYVDAVKDWWHKNIDP------EWKAMRDKAMALLQKESELQEIVRIVGPDALPERERA 490
Query: 394 -LLVARARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGF 433
LLVAR + F + + + ++ LN +
Sbjct: 491 ILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLLNFY 531
>pdb|3A5C|A Chain A, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|B Chain B, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|C Chain C, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|I Chain I, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|J Chain J, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|K Chain K, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|A Chain A, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|B Chain B, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|C Chain C, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|I Chain I, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|J Chain J, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|K Chain K, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3J0J|A Chain A, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|B Chain B, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|C Chain C, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
Length = 578
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 138/323 (42%), Gaps = 28/323 (8%)
Query: 127 TGIKVIDLICPFSXXXXXXXXXXXXXXXXXNMMELINNIAKAHSGLSVFTGVGERTREGN 186
TG++++D++ P + L +++ + V+ G GER E
Sbjct: 207 TGMRILDVLFPVAMGGTAAIPGPFGSGKTVTQQSLAK---WSNADVVVYVGCGERGNEMT 263
Query: 187 DFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFF 246
D E E P + ++ N P R G+TIAE FRD+G V
Sbjct: 264 DVLVEFPELTDPKTGGPLMHRTVLIANTSNMPVAAREASIYVGVTIAEYFRDQGFSVALM 323
Query: 247 IDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAST-----KKGSITSIQA 301
D+ R+ A E+S+ L MP+ GY P LA + ER ++G++T + A
Sbjct: 324 ADSTSRWAEALREISSRLEEMPAEEGYPPYLAARLAAFYERAGKVITLGGEEGAVTIVGA 383
Query: 302 VYVPADDLTDPSPATT------FAHLDSTVVLSRDIASLGIYPAIDPLDSTS---RQLDP 352
V P D+++P +T F LD+++ R +PAI+ S S LDP
Sbjct: 384 VSPPGGDMSEPVTQSTLRIVGAFWRLDASLAFRRH------FPAINWNGSYSLFTSALDP 437
Query: 353 LI---VGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVARARKMQR-FLSQ 408
V + + ++ + LQR L++I+ ++G D L ++L++ R ++ FL Q
Sbjct: 438 WYRENVAEDYPELRDAISELLQREAGLQEIVQLVGPDALQDAERLVIEVGRIIREDFLQQ 497
Query: 409 -PFHVAEVFTGKSGKYVSLKDTL 430
+H + + Y +K L
Sbjct: 498 NAYHEVDAYCSMKKAYGIMKMIL 520
>pdb|3ND9|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Of The A1ao Atp Synthase
Length = 588
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 117/281 (41%), Gaps = 27/281 (9%)
Query: 174 VFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIA 233
++ G GER E D E + K KP + ++ N P R TG+TIA
Sbjct: 257 IYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIA 316
Query: 234 EGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAST-- 291
E FRD G DV D+ R+ A E+S L MP GY LA ++ ER
Sbjct: 317 EYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVT 376
Query: 292 -----KKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDST 346
+ GS++ I AV P D ++P T + L D+A +PAI+ L S
Sbjct: 377 LGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSY 436
Query: 347 S-----------RQLDPLIVGKKHYKIAR-LVQSTLQRYKELRDIISILGMDELSPEDK- 393
S + +DP +K R + LQ+ EL++I+ I+G D L ++
Sbjct: 437 SLYVDAVKDWWHKNIDP------EWKAMRDKAMALLQKESELQEIVRIVGPDALPERERA 490
Query: 394 -LLVARARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGF 433
LLVAR + F + + + ++ LN +
Sbjct: 491 ILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLLNFY 531
>pdb|3GQB|A Chain A, Crystal Structure Of The A3b3 Complex From V-atpase
pdb|3GQB|C Chain C, Crystal Structure Of The A3b3 Complex From V-atpase
Length = 578
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 139/323 (43%), Gaps = 28/323 (8%)
Query: 127 TGIKVIDLICPFSXXXXXXXXXXXXXXXXXNMMELINNIAKAHSGLSVFTGVGERTREGN 186
TG++++D++ P + L +++ + V+ G GER E
Sbjct: 207 TGMRILDVLFPVAMGGTAAIPGPFGSGKSVTQQSLAK---WSNADVVVYVGSGERGNEMT 263
Query: 187 DFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFF 246
D E E P + ++ N P R G+TIAE FRD+G V
Sbjct: 264 DVLVEFPELTDPKTGGPLMHRTVLIANTSNMPVAAREASIYVGVTIAEYFRDQGFSVALM 323
Query: 247 IDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAST-----KKGSITSIQA 301
D+ R+ A E+S+ L MP+ GY P LA + ER ++G++T + A
Sbjct: 324 ADSTSRWAEALREISSRLEEMPAEEGYPPYLAARLAAFYERAGKVITLGGEEGAVTIVGA 383
Query: 302 VYVPADDLTDPSPATT------FAHLDSTVVLSRDIASLGIYPAIDPLDSTS---RQLDP 352
V P D+++P +T F LD+++ R +PAI+ S S LDP
Sbjct: 384 VSPPGGDMSEPVTQSTLRIVGAFWRLDASLAFRRH------FPAINWNGSYSLFTSALDP 437
Query: 353 LI---VGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVARARKMQR-FLSQ 408
V + + ++ + LQR L++I+ ++G D L ++L++ R ++ FL Q
Sbjct: 438 WYRENVAEDYPELRDAISELLQREAGLQEIVQLVGPDALQDAERLVIEVGRIIREDFLQQ 497
Query: 409 -PFHVAEVFTGKSGKYVSLKDTL 430
+H + ++ Y +K L
Sbjct: 498 NAYHEVDAYSSMKKAYGIMKMIL 520
>pdb|3SE0|A Chain A, Structural Characterization Of The Subunit A Mutant F508w
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 107/246 (43%), Gaps = 27/246 (10%)
Query: 174 VFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIA 233
++ G GER E D E + K KP + ++ N P R TG+TIA
Sbjct: 257 IYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIA 316
Query: 234 EGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAST-- 291
E FRD G DV D+ R+ A E+S L MP GY LA ++ ER
Sbjct: 317 EYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVT 376
Query: 292 -----KKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDST 346
+ GS++ I AV P D ++P T + L D+A +PAI+ L S
Sbjct: 377 LGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSY 436
Query: 347 S-----------RQLDPLIVGKKHYKIAR-LVQSTLQRYKELRDIISILGMDELSPEDK- 393
S + +DP +K R + LQ+ EL++I+ I+G D L ++
Sbjct: 437 SLYVDAVKDWWHKNIDP------EWKAMRDKAMALLQKESELQEIVRIVGPDALPERERA 490
Query: 394 -LLVAR 398
LLVAR
Sbjct: 491 ILLVAR 496
>pdb|2QE7|A Chain A, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|B Chain B, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|C Chain C, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 502
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 102/421 (24%), Positives = 176/421 (41%), Gaps = 29/421 (6%)
Query: 30 LKIENSELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKATLGRIINV 89
L+ EN + + Q L + V ++LG +R GT VK TG+ + +PVG+A LGR++N
Sbjct: 53 LEFENG--VMGMAQNLEEDNVGVVILGPYTEIREGTQVKRTGRIMEVPVGEALLGRVVNP 110
Query: 90 LGDPIDEKGNISNKYVSSIHRTPPXXXXXXXXXXXXXTGIKVIDLICPFSXXXXXXXXXX 149
LG P+D +G I I P TGIK ID + P
Sbjct: 111 LGQPLDGRGPIETAEYRPIESPAPGVMDRKSVHEPLQTGIKAIDSMIPIGRGQRELIIGD 170
Query: 150 XXXXXXXNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVS 209
++ I N K + ++ +G++ + V L + + +
Sbjct: 171 RQTGKTTIAIDTIIN-QKGQDVICIYVAIGQK--------QSTVAGVVETLRQHDALDYT 221
Query: 210 MVY-GQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMP 268
+V +EP+ G + E F +GK L D++ + A E+S LL R P
Sbjct: 222 IVVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSKQAAAYRELSLLLRRPP 281
Query: 269 SAVGYQPTLAEEMGYLQERIA--STKK--GSITSIQAVYVPADDLTDPSPATTFAHLDST 324
Y + L ER A S +K GS+T++ + A D++ P + D
Sbjct: 282 GREAYPGDVFYLHSRLLERAAKLSDEKGGGSLTALPFIETQAGDVSAYIPTNVISITDGQ 341
Query: 325 VVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILG 384
+ L D+ G+ PA++ S SR + K K+A ++ L +Y+EL+ + G
Sbjct: 342 IFLESDLFYSGVRPAVNVGISVSRVGGAAQI-KAMKKVAGTLRLDLAQYRELQ-AFAQFG 399
Query: 385 MDELSPEDKLLVARARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISSGELDNI 444
D DK A+ + +R E+ K + +++ + + +++G +D+I
Sbjct: 400 SD----LDKATQAKLNRGER-------TVEILKQDEHKPMPVEEQVISIYAVTNGFMDDI 448
Query: 445 P 445
P
Sbjct: 449 P 449
>pdb|3VR6|A Chain A, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|B Chain B, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|C Chain C, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
Length = 600
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 91/339 (26%), Positives = 146/339 (43%), Gaps = 51/339 (15%)
Query: 172 LSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLT 231
L V+ G GER E D +E E N + + ++ N P R TG+T
Sbjct: 260 LVVYVGCGERGNEMTDVVNEFPELIDPNTGESLMERTVLIANTSNMPVAAREASIYTGIT 319
Query: 232 IAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERI--- 288
IAE FRD G DV D+ R+ A E+S L MP GY L + ER
Sbjct: 320 IAEYFRDMGYDVAIMADSTSRWAEALREMSGRLEEMPGDEGYPAYLGSRLAEYYERSGRV 379
Query: 289 ----ASTKKGSITSIQAVYVPADDLTDPSPATT------FAHLDSTVVLSRDIASLGIYP 338
+ ++GSIT+I AV D+++P T F LDS++ R +P
Sbjct: 380 IALGSDQREGSITAISAVSPSGGDISEPVTQNTLRVVKVFWGLDSSLAQKRH------FP 433
Query: 339 AIDPLDSTS-------RQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPE 391
+I+ + S S R +D I+ + + LQ ++L +I+ ++G+D LS
Sbjct: 434 SINWIQSYSLYSTEVGRYMDQ-ILQQDWSDMVTEGMRILQEEEQLNEIVRLVGIDSLSDN 492
Query: 392 DKLLVARARKMQR-FLSQ-PFHVAEVFTGKSGKYVSLKDTLNG-------------FHLI 436
D+L + A+ ++ +L Q F + FT + ++ LK L F+ I
Sbjct: 493 DRLTLEVAKSIREDYLQQNAFDDVDTFTSREKQFNMLKVILTFGKEARKALSLGAYFNEI 552
Query: 437 SSGEL---------DNIPEQAFYMVGTIDEAIKKSKKLM 466
G + IPE+ + +I+E IK++ +L+
Sbjct: 553 MEGTVAVRERISRSKYIPEEELAKISSINEEIKETIQLI 591
>pdb|3VR2|A Chain A, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|B Chain B, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|C Chain C, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR3|A Chain A, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|B Chain B, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|C Chain C, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR4|A Chain A, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|B Chain B, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|C Chain C, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR5|A Chain A, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|B Chain B, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|C Chain C, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
Length = 600
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 92/340 (27%), Positives = 145/340 (42%), Gaps = 53/340 (15%)
Query: 172 LSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLT 231
L V+ G GER E D +E E N + + ++ N P R TG+T
Sbjct: 260 LVVYVGCGERGNEXTDVVNEFPELIDPNTGESLXERTVLIANTSNXPVAAREASIYTGIT 319
Query: 232 IAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERI--- 288
IAE FRD G DV D+ R+ A E S L P GY L + ER
Sbjct: 320 IAEYFRDXGYDVAIXADSTSRWAEALREXSGRLEEXPGDEGYPAYLGSRLAEYYERSGRV 379
Query: 289 ----ASTKKGSITSIQAVYVPADDLTDPSPATT------FAHLDSTVVLSRDIASLGIYP 338
+ ++GSIT+I AV D+++P T F LDS++ R +P
Sbjct: 380 IALGSDQREGSITAISAVSPSGGDISEPVTQNTLRVVKVFWGLDSSLAQKRH------FP 433
Query: 339 AIDPLDSTSRQLDPLIVGKKHYKIARLVQST--------LQRYKELRDIISILGMDELSP 390
+I+ + S S L VG+ +I + S LQ ++L +I+ ++G+D LS
Sbjct: 434 SINWIQSYS--LYSTEVGRYXDQILQQDWSDXVTEGXRILQEEEQLNEIVRLVGIDSLSD 491
Query: 391 EDKLLVARARKMQR-FLSQ-PFHVAEVFTGKSGKYVSLKDTLNG-------------FHL 435
D+L + A+ ++ +L Q F + FT + ++ LK L F+
Sbjct: 492 NDRLTLEVAKSIREDYLQQNAFDDVDTFTSREKQFNXLKVILTFGKEARKALSLGAYFNE 551
Query: 436 ISSGEL---------DNIPEQAFYMVGTIDEAIKKSKKLM 466
I G + IPE+ + +I+E IK++ +L+
Sbjct: 552 IXEGTVAVRERISRSKYIPEEELAKISSINEEIKETIQLI 591
>pdb|3OAA|A Chain A, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|B Chain B, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|C Chain C, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|I Chain I, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|J Chain J, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|K Chain K, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Q Chain Q, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|R Chain R, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|S Chain S, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Y Chain Y, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Z Chain Z, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|AA Chain a, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 513
Score = 91.7 bits (226), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 81/347 (23%), Positives = 144/347 (41%), Gaps = 34/347 (9%)
Query: 50 VRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIH 109
V +V+G L G VK TG+ + +PVG+ LGR++N LG PID KG + + S++
Sbjct: 71 VGAVVMGPYADLAEGMKVKCTGRILEVPVGRGLLGRVVNTLGAPIDGKGPLDHDGFSAVE 130
Query: 110 RTPPXXXXXXXXXXXXXTGIKVIDLICPFSXXXXXXXXXXXXXXXXXNMMELINNIAKAH 169
P TG K +D + P ++ I N +
Sbjct: 131 AIAPGVIERQSVDQPVQTGYKAVDSMIPIGRGQRELIIGDRQTGKTALAIDAIIN--QRD 188
Query: 170 SGL-SVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALT 228
SG+ ++ +G++ ++ ++ E + + +V +E + +
Sbjct: 189 SGIKCIYVAIGQKASTISNVVRKLEEHGAL-------ANTIVVVATASESAALQYLAPYA 241
Query: 229 GLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERI 288
G + E FRD G+D L D++ + +A ++S LL R P + + L ER
Sbjct: 242 GCAMGEYFRDRGEDALIIYDDLSKQAVAYRQISLLLRRPPGREAFPGDVFYLHSRLLERA 301
Query: 289 AST---------------KKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIAS 333
A K GS+T++ + A D++ P + D + L ++ +
Sbjct: 302 ARVNAEYVEAFTKGEVKGKTGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLETNLFN 361
Query: 334 LGIYPAIDPLDSTSRQLDPLIVGKKHYKIARL----VQSTLQRYKEL 376
GI PA++P S SR + G KI + +++ L +Y+EL
Sbjct: 362 AGIRPAVNPGISVSR-----VGGAAQTKIMKKLSGGIRTALAQYREL 403
>pdb|4B2Q|A Chain A, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|C Chain C, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|AA Chain a, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|CC Chain c, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 485
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 99/416 (23%), Positives = 168/416 (40%), Gaps = 38/416 (9%)
Query: 48 GIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSS 107
G V ++ G+ ++ G +VK TG + +PVG LGR+++ LG+PID KG I S
Sbjct: 46 GQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSR 105
Query: 108 IHRTPPXXXXXXXXXXXXXTGIKVIDLICPFSXXXXXXXXXXXXXXXXXNMMELINNIAK 167
P TG+K +D + P ++ I N +
Sbjct: 106 AQVKAPGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKR 165
Query: 168 AHSG-------LSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVS-MVYGQMNEPS 219
++G V+ VG++ + V L++ + K S +V +E +
Sbjct: 166 WNNGSDESKKLYCVYVAVGQK--------RSTVAQLVQTLEQHDAMKYSIIVAATASEAA 217
Query: 220 GNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAE 279
+ T +I E FRD GK L D++ + +A ++S LL R P Y +
Sbjct: 218 PLQYLAPFTAASIGEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFY 277
Query: 280 EMGYLQERIASTKK----GSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLG 335
L ER A + GS+T++ + D++ P + D + L ++ G
Sbjct: 278 LHSRLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKG 337
Query: 336 IYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLL 395
I PAI+ S SR V K ++A ++ L +Y+E+ + G D L K
Sbjct: 338 IRPAINVGLSVSRVGSAAQV-KALKQVAGSLKLFLAQYREV-AAFAQFGSD-LDASTKQT 394
Query: 396 VARARKMQRFLSQ----PFHVAE----VFTGKSGKYVSLKDTLNGFHLISSGELDN 443
+ R ++ + L Q P E ++ G +G L+G L GE ++
Sbjct: 395 LVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGH-------LDGIELSRIGEFES 443
>pdb|4B2Q|B Chain B, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|BB Chain b, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 486
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 99/416 (23%), Positives = 168/416 (40%), Gaps = 38/416 (9%)
Query: 48 GIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSS 107
G V ++ G+ ++ G +VK TG + +PVG LGR+++ LG+PID KG I S
Sbjct: 47 GQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSR 106
Query: 108 IHRTPPXXXXXXXXXXXXXTGIKVIDLICPFSXXXXXXXXXXXXXXXXXNMMELINNIAK 167
P TG+K +D + P ++ I N +
Sbjct: 107 AQVKAPGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKR 166
Query: 168 AHSG-------LSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVS-MVYGQMNEPS 219
++G V+ VG++ + V L++ + K S +V +E +
Sbjct: 167 WNNGSDESKKLYCVYVAVGQK--------RSTVAQLVQTLEQHDAMKYSIIVAATASEAA 218
Query: 220 GNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAE 279
+ T +I E FRD GK L D++ + +A ++S LL R P Y +
Sbjct: 219 PLQYLAPFTAASIGEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFY 278
Query: 280 EMGYLQERIASTKK----GSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLG 335
L ER A + GS+T++ + D++ P + D + L ++ G
Sbjct: 279 LHSRLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKG 338
Query: 336 IYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLL 395
I PAI+ S SR V K ++A ++ L +Y+E+ + G D L K
Sbjct: 339 IRPAINVGLSVSRVGSAAQV-KALKQVAGSLKLFLAQYREV-AAFAQFGSD-LDASTKQT 395
Query: 396 VARARKMQRFLSQ----PFHVAE----VFTGKSGKYVSLKDTLNGFHLISSGELDN 443
+ R ++ + L Q P E ++ G +G L+G L GE ++
Sbjct: 396 LVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGH-------LDGIELSRIGEFES 444
>pdb|2HLD|A Chain A, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|B Chain B, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|C Chain C, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|J Chain J, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|K Chain K, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|L Chain L, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|S Chain S, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|T Chain T, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|U Chain U, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|3FKS|A Chain A, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|B Chain B, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|C Chain C, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|J Chain J, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|K Chain K, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|L Chain L, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|S Chain S, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|T Chain T, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|U Chain U, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|2WPD|A Chain A, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|B Chain B, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|C Chain C, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3OE7|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEH|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3ZRY|A Chain A, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|B Chain B, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|C Chain C, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|A Chain A, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|B Chain B, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|C Chain C, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|K Chain K, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|L Chain L, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|M Chain M, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 510
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 100/419 (23%), Positives = 168/419 (40%), Gaps = 44/419 (10%)
Query: 48 GIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSS 107
G V ++ G+ ++ G +VK TG + +PVG LGR+++ LG+PID KG I S
Sbjct: 71 GQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSR 130
Query: 108 IHRTPPXXXXXXXXXXXXXTGIKVIDLICPFSXXXXXXXXXXXXXXXXXNMMELINNIAK 167
P TG+K +D + P ++ I N +
Sbjct: 131 AQVKAPGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKR 190
Query: 168 AHSG-------LSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVS-MVYGQMNEPS 219
++G V+ VG++ + V L++ + K S +V +E +
Sbjct: 191 WNNGSDESKKLYCVYVAVGQK--------RSTVAQLVQTLEQHDAMKYSIIVAATASEAA 242
Query: 220 GNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGY------ 273
+ T +I E FRD GK L D++ + +A ++S LL R P Y
Sbjct: 243 PLQYLAPFTAASIGEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFY 302
Query: 274 -QPTLAEEMGYLQERIASTKKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIA 332
L E L E+ S GS+T++ + D++ P + D + L ++
Sbjct: 303 LHSRLLERAAKLSEKEGS---GSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELF 359
Query: 333 SLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPED 392
GI PAI+ S SR V K ++A ++ L +Y+E+ + G D L
Sbjct: 360 YKGIRPAINVGLSVSRVGSAAQV-KALKQVAGSLKLFLAQYREV-AAFAQFGSD-LDAST 416
Query: 393 KLLVARARKMQRFLSQ----PFHVAE----VFTGKSGKYVSLKDTLNGFHLISSGELDN 443
K + R ++ + L Q P E ++ G +G L+G L GE ++
Sbjct: 417 KQTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGH-------LDGIELSRIGEFES 468
>pdb|3OFN|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 510
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 100/419 (23%), Positives = 168/419 (40%), Gaps = 44/419 (10%)
Query: 48 GIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSS 107
G V ++ G+ ++ G +VK TG + +PVG LGR+++ LG+PID KG I S
Sbjct: 71 GQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSR 130
Query: 108 IHRTPPXXXXXXXXXXXXXTGIKVIDLICPFSXXXXXXXXXXXXXXXXXNMMELINNIAK 167
P TG+K +D + P ++ I N +
Sbjct: 131 AQVKAPGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKR 190
Query: 168 AHSG-------LSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVS-MVYGQMNEPS 219
++G V+ VG++ + V L++ + K S +V +E +
Sbjct: 191 WNNGSDESKKLYCVYVAVGQK--------RSTVAQLVQTLEQHDAMKYSIIVAATASEAA 242
Query: 220 GNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGY------ 273
+ T +I E FRD GK L D++ + +A ++S LL R P Y
Sbjct: 243 PLQYLAPFTAASIGEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFY 302
Query: 274 -QPTLAEEMGYLQERIASTKKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIA 332
L E L E+ S GS+T++ + D++ P + D + L ++
Sbjct: 303 LHSRLLERAAKLSEKEGS---GSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELF 359
Query: 333 SLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPED 392
GI PAI+ S SR V K ++A ++ L +Y+E+ + G D L
Sbjct: 360 YKGIRPAINVGLSVSRVGSAAQV-KALKQVAGSLKLFLAQYREV-AAFAQFGSD-LDAST 416
Query: 393 KLLVARARKMQRFLSQ----PFHVAE----VFTGKSGKYVSLKDTLNGFHLISSGELDN 443
K + R ++ + L Q P E ++ G +G L+G L GE ++
Sbjct: 417 KQTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGH-------LDGIELSRIGEFES 468
>pdb|1SKY|B Chain B, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 502
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 100/416 (24%), Positives = 169/416 (40%), Gaps = 38/416 (9%)
Query: 50 VRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIH 109
V ++LG G++ G V+ TG+ + +PVG+ +GR++N LG P+D G + I
Sbjct: 71 VGIVILGPYTGIKEGDEVRRTGRIMEVPVGETLIGRVVNPLGQPVDGLGPVETTETRPIE 130
Query: 110 RTPPXXXXXXXXXXXXXTGIKVIDLICPFSXXXXXXXXXXXXXXXXXNMMELINNIAKAH 169
P TGIK ID + P ++ I N K
Sbjct: 131 SRAPGVMDRRSVHEPLQTGIKAIDALVPIGRGQRELIIGDRQTGKTSVAIDTIIN-QKDQ 189
Query: 170 SGLSVFTGVGERTREGNDFYHEMIEAKVVNLDK---PEKSKVSMVYGQMNEPSGNRLRVA 226
+ + ++ +G++ + V L K P+ + V V ++P+
Sbjct: 190 NMICIYVAIGQK--------ESTVATVVETLAKHGAPDYTIV--VTASASQPAPLLFLAP 239
Query: 227 LTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQE 286
G+ + E F GK VL ID++ + A ++S LL R P Y + L E
Sbjct: 240 YAGVAMGEYFMIMGKHVLVVIDDLSKQAAAYRQLSLLLRRPPGREAYPGDIFYLHSRLLE 299
Query: 287 RIA----STKKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDP 342
R A + GS+T++ V A D++ P + D + L D+ G+ PAI+
Sbjct: 300 RAAKLSDAKGGGSLTALPFVETQAGDISAYIPTNVISITDGQIFLQSDLFFSGVRPAINA 359
Query: 343 LDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVARARKM 402
S SR + K K+A ++ L Y+EL + + G D L + VAR +
Sbjct: 360 GLSVSRVGGAAQI-KAMKKVAGTLRLDLAAYREL-EAFAQFGSD-LDKATQANVARGART 416
Query: 403 QRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISSGELDNIP-------EQAFYM 451
L Q H + + ++ + + ++ G LD+IP E+ FY+
Sbjct: 417 VEVLKQDLH----------QPIPVEKQVLIIYALTRGFLDDIPVEDVRRFEKEFYL 462
>pdb|2XOK|A Chain A, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|B Chain B, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|C Chain C, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 545
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 100/419 (23%), Positives = 168/419 (40%), Gaps = 44/419 (10%)
Query: 48 GIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSS 107
G V ++ G+ ++ G +VK TG + +PVG LGR+++ LG+PID KG I S
Sbjct: 106 GQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSR 165
Query: 108 IHRTPPXXXXXXXXXXXXXTGIKVIDLICPFSXXXXXXXXXXXXXXXXXNMMELINNIAK 167
P TG+K +D + P ++ I N +
Sbjct: 166 AQVKAPGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKR 225
Query: 168 AHSG-------LSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVS-MVYGQMNEPS 219
++G V+ VG++ + V L++ + K S +V +E +
Sbjct: 226 WNNGSDESKKLYCVYVAVGQK--------RSTVAQLVQTLEQHDAMKYSIIVAATASEAA 277
Query: 220 GNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGY------ 273
+ T +I E FRD GK L D++ + +A ++S LL R P Y
Sbjct: 278 PLQYLAPFTAASIGEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFY 337
Query: 274 -QPTLAEEMGYLQERIASTKKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIA 332
L E L E+ S GS+T++ + D++ P + D + L ++
Sbjct: 338 LHSRLLERAAKLSEKEGS---GSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELF 394
Query: 333 SLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPED 392
GI PAI+ S SR V K ++A ++ L +Y+E+ + G D L
Sbjct: 395 YKGIRPAINVGLSVSRVGSAAQV-KALKQVAGSLKLFLAQYREV-AAFAQFGSD-LDAST 451
Query: 393 KLLVARARKMQRFLSQ----PFHVAE----VFTGKSGKYVSLKDTLNGFHLISSGELDN 443
K + R ++ + L Q P E ++ G +G L+G L GE ++
Sbjct: 452 KQTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGH-------LDGIELSRIGEFES 503
>pdb|3OEE|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
Length = 510
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 100/419 (23%), Positives = 168/419 (40%), Gaps = 44/419 (10%)
Query: 48 GIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSS 107
G V ++ G+ ++ G +VK TG + +PVG LGR+++ LG+PID KG I S
Sbjct: 71 GQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSR 130
Query: 108 IHRTPPXXXXXXXXXXXXXTGIKVIDLICPFSXXXXXXXXXXXXXXXXXNMMELINNIAK 167
P TG+K +D + P ++ I N +
Sbjct: 131 AQVKAPGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKR 190
Query: 168 AHSG-------LSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVS-MVYGQMNEPS 219
++G V+ VG++ + V L++ + K S +V +E +
Sbjct: 191 WNNGSDESKKLYCVYVAVGQK--------RSTVAQLVQTLEQHDAMKYSIIVAATASEAA 242
Query: 220 GNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGY------ 273
+ T +I E FRD GK L D++ + +A ++S LL R P Y
Sbjct: 243 PLQYLAPFTAASIGEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFY 302
Query: 274 -QPTLAEEMGYLQERIASTKKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIA 332
L E L E+ S GS+T++ + D++ P + D + L ++
Sbjct: 303 LHSRLLERAAKLSEKEGS---GSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELF 359
Query: 333 SLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPED 392
GI PAI+ S SR V K ++A ++ L +Y+E+ + G D L
Sbjct: 360 YKGIRPAINVGLSVSRVGSAAQV-KALKQVAGSLKLFLAQYREV-AASAQFGSD-LDAST 416
Query: 393 KLLVARARKMQRFLSQ----PFHVAE----VFTGKSGKYVSLKDTLNGFHLISSGELDN 443
K + R ++ + L Q P E ++ G +G L+G L GE ++
Sbjct: 417 KQTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGH-------LDGIELSRIGEFES 468
>pdb|1FX0|A Chain A, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|A Chain A, Crystal Structure Of Spinach Chloroplast F1-atpase
Complexed With Tentoxin
Length = 507
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 96/409 (23%), Positives = 167/409 (40%), Gaps = 25/409 (6%)
Query: 32 IENSELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLG 91
+E E T+ + L V +++G ++ G+ VK TG+ IPV +A LGR+IN L
Sbjct: 54 VEFEEGTIGIALNLESNNVGVVLMGDGLMIQEGSSVKATGRIAQIPVSEAYLGRVINALA 113
Query: 92 DPIDEKGNISNKYVSSIHRTPPXXXXXXXXXXXXXTGIKVIDLICPFSXXXXXXXXXXXX 151
PID +G I+ I P TG+ ID + P
Sbjct: 114 KPIDGRGEITASESRLIESPAPGIMSRRSVYEPLQTGLIAIDAMIPVGRGQRELIIGDRQ 173
Query: 152 XXXXXNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMV 211
+ I N + + + V+ +G++ + V N + + ++V
Sbjct: 174 TGKTAVATDTILN-QQGQNVICVYVAIGQKASS--------VAQVVTNFQERGAMEYTIV 224
Query: 212 YGQ-MNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSA 270
+ + P+ + TG +AE F + L D++ + A ++S LL R P
Sbjct: 225 VAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGR 284
Query: 271 VGYQPTLAEEMGYLQERIASTK----KGSITSIQAVYVPADDLTDPSPATTFAHLDSTVV 326
Y + L ER A +GS+T++ V A D++ P + D +
Sbjct: 285 EAYPGDVFYLHSRLLERAAKLSSLLGEGSMTALPIVETQAGDVSAYIPTNVISITDGQIF 344
Query: 327 LSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMD 386
LS D+ + GI PAI+ S SR + K K+A ++ L ++ EL
Sbjct: 345 LSADLFNAGIRPAINVGISVSRVGSAAQI-KAMKKVAGKLKLELAQFAELEAFAQFASDL 403
Query: 387 ELSPEDKLLVARARKMQRFLSQPF--------HVAEVFTGKSGKYVSLK 427
+ + +++L AR ++++ L QP V ++TG +G SL+
Sbjct: 404 DKATQNQL--ARGQRLRELLKQPQSAPLTVEEQVMTIYTGTNGYLDSLE 450
>pdb|2XND|A Chain A, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|B Chain B, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|C Chain C, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 492
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 86/371 (23%), Positives = 152/371 (40%), Gaps = 23/371 (6%)
Query: 50 VRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIH 109
V +V G + ++ G IVK TG + +PVG+ LGR+++ LG+ ID KG I +K +
Sbjct: 53 VGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVG 112
Query: 110 RTPPXXXXXXXXXXXXXTGIKVIDLICPFSXXXXXXXXXXXXXXXXXNMMELINNIAKAH 169
P TGIK +D + P ++ I N + +
Sbjct: 113 LKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFN 172
Query: 170 SG-------LSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNR 222
G ++ +G++ + V L + K ++V +
Sbjct: 173 DGTDEKKKLYCIYVAIGQK--------RSTVAQLVKRLTDADAMKYTIVVSATASDAAPL 224
Query: 223 LRVA-LTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEM 281
+A +G ++ E FRD GK L D++ + +A ++S LL R P Y +
Sbjct: 225 QYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLH 284
Query: 282 GYLQERIASTKK----GSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIY 337
L ER A GS+T++ + A D++ P + D + L ++ GI
Sbjct: 285 SRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIR 344
Query: 338 PAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVA 397
PAI+ S SR + + ++A ++ L +Y+E+ + G D L + L++
Sbjct: 345 PAINVGLSVSR-VGSAAQTRAMKQVAGTMKLELAQYREVA-AFAQFGSD-LDAATQQLLS 401
Query: 398 RARKMQRFLSQ 408
R ++ L Q
Sbjct: 402 RGVRLTELLKQ 412
>pdb|1BMF|A Chain A, Bovine Mitochondrial F1-Atpase
pdb|1BMF|B Chain B, Bovine Mitochondrial F1-Atpase
pdb|1BMF|C Chain C, Bovine Mitochondrial F1-Atpase
pdb|1NBM|A Chain A, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|B Chain B, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|C Chain C, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1QO1|A Chain A, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|B Chain B, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|C Chain C, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|A Chain A, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|B Chain B, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|C Chain C, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|A Chain A, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|B Chain B, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|C Chain C, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|A Chain A, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|B Chain B, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|C Chain C, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|A Chain A, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|B Chain B, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|C Chain C, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|A Chain A, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|B Chain B, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|C Chain C, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|A Chain A, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|B Chain B, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|C Chain C, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|A Chain A, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|B Chain B, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|C Chain C, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|A Chain A, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|B Chain B, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|C Chain C, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|A Chain A, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|B Chain B, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|C Chain C, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2WSS|A Chain A, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|B Chain B, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|C Chain C, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|J Chain J, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|K Chain K, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|L Chain L, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|4ASU|A Chain A, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|B Chain B, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|C Chain C, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 510
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 86/371 (23%), Positives = 152/371 (40%), Gaps = 23/371 (6%)
Query: 50 VRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIH 109
V +V G + ++ G IVK TG + +PVG+ LGR+++ LG+ ID KG I +K +
Sbjct: 71 VGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVG 130
Query: 110 RTPPXXXXXXXXXXXXXTGIKVIDLICPFSXXXXXXXXXXXXXXXXXNMMELINNIAKAH 169
P TGIK +D + P ++ I N + +
Sbjct: 131 LKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFN 190
Query: 170 SG-------LSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNR 222
G ++ +G++ + V L + K ++V +
Sbjct: 191 DGTDEKKKLYCIYVAIGQK--------RSTVAQLVKRLTDADAMKYTIVVSATASDAAPL 242
Query: 223 LRVA-LTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEM 281
+A +G ++ E FRD GK L D++ + +A ++S LL R P Y +
Sbjct: 243 QYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLH 302
Query: 282 GYLQERIASTKK----GSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIY 337
L ER A GS+T++ + A D++ P + D + L ++ GI
Sbjct: 303 SRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIR 362
Query: 338 PAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVA 397
PAI+ S SR + + ++A ++ L +Y+E+ + G D L + L++
Sbjct: 363 PAINVGLSVSR-VGSAAQTRAMKQVAGTMKLELAQYREVA-AFAQFGSD-LDAATQQLLS 419
Query: 398 RARKMQRFLSQ 408
R ++ L Q
Sbjct: 420 RGVRLTELLKQ 430
>pdb|1COW|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
Length = 510
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 86/371 (23%), Positives = 152/371 (40%), Gaps = 23/371 (6%)
Query: 50 VRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIH 109
V +V G + ++ G IVK TG + +PVG+ LGR+++ LG+ ID KG I +K +
Sbjct: 71 VGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVG 130
Query: 110 RTPPXXXXXXXXXXXXXTGIKVIDLICPFSXXXXXXXXXXXXXXXXXNMMELINNIAKAH 169
P TGIK +D + P ++ I N + +
Sbjct: 131 LKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFN 190
Query: 170 SG-------LSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNR 222
G ++ +G++ + V L + K ++V +
Sbjct: 191 DGTDEKKKLYCIYVAIGQK--------RSTVAQLVKRLTDADAMKYTIVVSATASDAAPL 242
Query: 223 LRVA-LTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEM 281
+A +G ++ E FRD GK L D++ + +A ++S LL R P Y +
Sbjct: 243 QYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLH 302
Query: 282 GYLQERIASTKK----GSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIY 337
L ER A GS+T++ + A D++ P + D + L ++ GI
Sbjct: 303 SRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIR 362
Query: 338 PAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVA 397
PAI+ S SR + + ++A ++ L +Y+E+ + G D L + L++
Sbjct: 363 PAINVGLSVSR-VGSAAQTRAMKQVAGTMKLELAQYREVA-AFAQFGSD-LDAATQQLLS 419
Query: 398 RARKMQRFLSQ 408
R ++ L Q
Sbjct: 420 RGVRLTELLKQ 430
>pdb|2JIZ|A Chain A, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|B Chain B, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|C Chain C, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|H Chain H, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|I Chain I, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|J Chain J, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|A Chain A, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|B Chain B, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|C Chain C, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|H Chain H, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|I Chain I, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|J Chain J, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|A Chain A, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|B Chain B, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|C Chain C, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|H Chain H, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|I Chain I, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|J Chain J, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|A Chain A, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|B Chain B, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|C Chain C, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1
Length = 510
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 86/371 (23%), Positives = 152/371 (40%), Gaps = 23/371 (6%)
Query: 50 VRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIH 109
V +V G + ++ G IVK TG + +PVG+ LGR+++ LG+ ID KG I +K +
Sbjct: 71 VGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVG 130
Query: 110 RTPPXXXXXXXXXXXXXTGIKVIDLICPFSXXXXXXXXXXXXXXXXXNMMELINNIAKAH 169
P TGIK +D + P ++ I N + +
Sbjct: 131 LKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFN 190
Query: 170 SG-------LSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNR 222
G ++ +G++ + V L + K ++V +
Sbjct: 191 DGTDEKKKLYCIYVAIGQK--------RSTVAQLVKRLTDADAMKYTIVVSATASDAAPL 242
Query: 223 LRVA-LTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEM 281
+A +G ++ E FRD GK L D++ + +A ++S LL R P Y +
Sbjct: 243 QYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLH 302
Query: 282 GYLQERIASTKK----GSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIY 337
L ER A GS+T++ + A D++ P + D + L ++ GI
Sbjct: 303 SRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIR 362
Query: 338 PAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVA 397
PAI+ S SR + + ++A ++ L +Y+E+ + G D L + L++
Sbjct: 363 PAINVGLSVSR-VGSAAQTRAMKQVAGTMKLELAQYREVA-AFAQFGSD-LDAATQQLLS 419
Query: 398 RARKMQRFLSQ 408
R ++ L Q
Sbjct: 420 RGVRLTELLKQ 430
>pdb|2W6E|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 553
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 86/371 (23%), Positives = 152/371 (40%), Gaps = 23/371 (6%)
Query: 50 VRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIH 109
V +V G + ++ G IVK TG + +PVG+ LGR+++ LG+ ID KG I +K +
Sbjct: 114 VGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVG 173
Query: 110 RTPPXXXXXXXXXXXXXTGIKVIDLICPFSXXXXXXXXXXXXXXXXXNMMELINNIAKAH 169
P TGIK +D + P ++ I N + +
Sbjct: 174 LKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFN 233
Query: 170 SG-------LSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNR 222
G ++ +G++ + V L + K ++V +
Sbjct: 234 DGTDEKKKLYCIYVAIGQK--------RSTVAQLVKRLTDADAMKYTIVVSATASDAAPL 285
Query: 223 LRVA-LTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEM 281
+A +G ++ E FRD GK L D++ + +A ++S LL R P Y +
Sbjct: 286 QYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLH 345
Query: 282 GYLQERIASTKK----GSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIY 337
L ER A GS+T++ + A D++ P + D + L ++ GI
Sbjct: 346 SRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIR 405
Query: 338 PAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVA 397
PAI+ S SR + + ++A ++ L +Y+E+ + G D L + L++
Sbjct: 406 PAINVGLSVSR-VGSAAQTRAMKQVAGTMKLELAQYREVA-AFAQFGSD-LDAATQQLLS 462
Query: 398 RARKMQRFLSQ 408
R ++ L Q
Sbjct: 463 RGVRLTELLKQ 473
>pdb|3GQB|B Chain B, Crystal Structure Of The A3b3 Complex From V-atpase
pdb|3GQB|D Chain D, Crystal Structure Of The A3b3 Complex From V-atpase
Length = 464
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 89/347 (25%), Positives = 141/347 (40%), Gaps = 26/347 (7%)
Query: 78 VGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPXXXXXXXXXXXXXTGIKVIDLICP 137
V K LGR N +G PID I+ + I P TGI ID++
Sbjct: 84 VSKEMLGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVARRKPEQFIQTGISTIDVMNT 143
Query: 138 ---------FSXXXXXXXXXXXXXXXXXNMM-ELINNIAKAHSGLSVFTGVGERTREGND 187
FS + +L K VF +G RE +
Sbjct: 144 LVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSY 203
Query: 188 FYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGK-DVLFF 246
F E + S+ + + ++P+ R+ LT+AE E VL
Sbjct: 204 FIQEFERTGAL-------SRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVI 256
Query: 247 IDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQER--IASTKKGSITSIQAVYV 304
+ ++ Y+ A E+ A +P GY + ++ + ER + KKGS+T I + +
Sbjct: 257 LTDMTNYSEALREIGAAREEIPGRRGYPGYMYTDLATIYERAGVVEGKKGSVTQIPILSM 316
Query: 305 PADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGK-----KH 359
P DD T P P T + + LSR++ GIYP IDPL S SR ++ VGK H
Sbjct: 317 PDDDRTHPIPDLTGYITEGQIQLSRELHRKGIYPPIDPLPSLSRLMNNG-VGKGKTREDH 375
Query: 360 YKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVARARKMQRFL 406
+++ + S ++R +++I+G D L+ D+ + A +RF
Sbjct: 376 KQVSDQLYSAYANGVDIRKLVAIIGEDALTENDRRYLQFADAFERFF 422
>pdb|1MAB|A Chain A, Rat Liver F1-Atpase
Length = 510
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 86/371 (23%), Positives = 152/371 (40%), Gaps = 23/371 (6%)
Query: 50 VRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIH 109
V +V G + ++ G IVK TG + +PVG LGR+++ LG+ ID KG + +K +
Sbjct: 71 VGVVVFGNDKLIKEGDIVKRTGAIVDVPVGDELLGRVVDALGNAIDGKGPVGSKIRRRVG 130
Query: 110 RTPPXXXXXXXXXXXXXTGIKVIDLICPFSXXXXXXXXXXXXXXXXXNMMELINNIAKAH 169
P TGIK +D + P ++ I N + +
Sbjct: 131 LKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFN 190
Query: 170 SG-------LSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNR 222
G ++ +G++ + V L + K ++V +
Sbjct: 191 DGTDEKKKLYCIYVAIGQK--------RSTVAQLVKRLTDADAMKYTIVVSATASDAAPL 242
Query: 223 LRVA-LTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEM 281
+A +G ++ E FRD GK L D++ + +A ++S LL R P Y +
Sbjct: 243 QYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLH 302
Query: 282 GYLQERIA----STKKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIY 337
L ER A S GS+T++ + A D++ P + D + L ++ GI
Sbjct: 303 SRLLERAAKMNDSFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIR 362
Query: 338 PAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVA 397
PAI+ S SR + + ++A ++ L +Y+E+ + G D L + L++
Sbjct: 363 PAINVGLSVSR-VGSAAQTRAMKQVAGTMKLELAQYREVA-AFAQFGSD-LDAATQQLLS 419
Query: 398 RARKMQRFLSQ 408
R ++ L Q
Sbjct: 420 RGVRLTELLKQ 430
>pdb|2F43|A Chain A, Rat Liver F1-atpase
Length = 510
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 86/371 (23%), Positives = 152/371 (40%), Gaps = 23/371 (6%)
Query: 50 VRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIH 109
V +V G + ++ G IVK TG + +PVG LGR+++ LG+ ID KG + +K +
Sbjct: 71 VGVVVFGNDKLIKEGDIVKRTGAIVDVPVGDELLGRVVDALGNAIDGKGPVGSKIRRRVG 130
Query: 110 RTPPXXXXXXXXXXXXXTGIKVIDLICPFSXXXXXXXXXXXXXXXXXNMMELINNIAKAH 169
P TGIK +D + P ++ I N + +
Sbjct: 131 LKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFN 190
Query: 170 SG-------LSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNR 222
G ++ +G++ + V L + K ++V +
Sbjct: 191 DGTDEKKKLYCIYVAIGQK--------RSTVAQLVKRLTDADAMKYTIVVSATASDAAPL 242
Query: 223 LRVA-LTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEM 281
+A +G ++ E FRD GK L D++ + +A ++S LL R P Y +
Sbjct: 243 QYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLH 302
Query: 282 GYLQERIA----STKKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIY 337
L ER A S GS+T++ + A D++ P + D + L ++ GI
Sbjct: 303 SRLLERAAKMNDSFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIR 362
Query: 338 PAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVA 397
PAI+ S SR + + ++A ++ L +Y+E+ + G D L + L++
Sbjct: 363 PAINVGLSVSR-VGSAAQTRAMKQVAGTMKLELAQYREVA-AFAQFGSD-LDAATQQLLS 419
Query: 398 RARKMQRFLSQ 408
R ++ L Q
Sbjct: 420 RGVRLTELLKQ 430
>pdb|3A5C|D Chain D, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|E Chain E, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|F Chain F, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|L Chain L, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|M Chain M, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|N Chain N, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|D Chain D, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|E Chain E, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|F Chain F, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|L Chain L, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|M Chain M, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|N Chain N, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3J0J|D Chain D, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|E Chain E, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|F Chain F, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
Length = 478
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 89/347 (25%), Positives = 140/347 (40%), Gaps = 26/347 (7%)
Query: 78 VGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPXXXXXXXXXXXXXTGIKVIDLICP 137
V K LGR N +G PID I+ + I P TGI ID++
Sbjct: 84 VSKEMLGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVARRKPEQFIQTGISTIDVMNT 143
Query: 138 ---------FSXXXXXXXXXXXXXXXXXNMM-ELINNIAKAHSGLSVFTGVGERTREGND 187
FS + +L K VF +G RE +
Sbjct: 144 LVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSY 203
Query: 188 FYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGK-DVLFF 246
F E + S+ + + ++P+ R+ LT+AE E VL
Sbjct: 204 FIQEFERTGAL-------SRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVI 256
Query: 247 IDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQER--IASTKKGSITSIQAVYV 304
+ ++ Y A E+ A +P GY + ++ + ER + KKGS+T I + +
Sbjct: 257 LTDMTNYCEALREIGAAREEIPGRRGYPGYMYTDLATIYERAGVVEGKKGSVTQIPILSM 316
Query: 305 PADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGK-----KH 359
P DD T P P T + + LSR++ GIYP IDPL S SR ++ VGK H
Sbjct: 317 PDDDRTHPIPDLTGYITEGQIQLSRELHRKGIYPPIDPLPSLSRLMNNG-VGKGKTREDH 375
Query: 360 YKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVARARKMQRFL 406
+++ + S ++R +++I+G D L+ D+ + A +RF
Sbjct: 376 KQVSDQLYSAYANGVDIRKLVAIIGEDALTENDRRYLQFADAFERFF 422
>pdb|1OHH|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
Length = 487
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 84/371 (22%), Positives = 149/371 (40%), Gaps = 31/371 (8%)
Query: 50 VRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIH 109
V +V G + ++ G IVK TG + +PVG+ LGR+++ LG+ ID KG I +K +
Sbjct: 48 VGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVG 107
Query: 110 RTPPXXXXXXXXXXXXXTGIKVIDLICPFSXXXXXXXXXXXXXXXXXNMMELINNIAKAH 169
P TGIK +D + P ++ I N + +
Sbjct: 108 LKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFN 167
Query: 170 SG-------LSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNR 222
G ++ +G++ + V L + K ++V +
Sbjct: 168 DGTDEKKKLYCIYVAIGQK--------RSTVAQLVKRLTDADAMKYTIVVSATASDAAPL 219
Query: 223 LRVA-LTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEM 281
+A +G ++ E FRD GK L D++ + +A ++S LL R P Y +
Sbjct: 220 QYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLH 279
Query: 282 GYLQERIASTKK----GSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIY 337
L ER A GS+T++ + A D++ P + D + L ++ GI
Sbjct: 280 SRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIR 339
Query: 338 PAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVA 397
PAI+ S SR + + ++A ++ L +Y+E+ L + L++
Sbjct: 340 PAINVGLSVSR-VGSAAQTRAMKQVAGTMKLELAQYREV----------ALDAATQQLLS 388
Query: 398 RARKMQRFLSQ 408
R ++ L Q
Sbjct: 389 RGVRLTELLKQ 399
>pdb|2R9V|A Chain A, Crystal Structure Of Atp Synthase Subunit Alpha (Tm1612)
From Thermotoga Maritima At 2.10 A Resolution
Length = 515
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 81/363 (22%), Positives = 141/363 (38%), Gaps = 15/363 (4%)
Query: 50 VRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIH 109
V I+LG + ++ G V+ + I +PVG+ LGR++N LG+P+D KG I+ K I
Sbjct: 84 VGIIILGEYKDIKEGHTVRRLKRIIEVPVGEELLGRVVNPLGEPLDGKGPINAKNFRPIE 143
Query: 110 RTPPXXXXXXXXXXXXXTGIKVIDLICPFSXXXXXXXXXXXXXXXXXNMMELINNIAKAH 169
P TGIK ID P ++ I N K
Sbjct: 144 IKAPGVIYRKPVDTPLQTGIKAIDSXIPIGRGQRELIIGDRQTGKTAIAIDTIIN-QKGQ 202
Query: 170 SGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTG 229
++ +G++ ++ + ++V ++P+ + G
Sbjct: 203 GVYCIYVAIGQKKSAIARIIDKLRQYGAXEY-------TTVVVASASDPASLQYIAPYAG 255
Query: 230 LTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIA 289
E F G+D L D++ ++ +A ++S L R P Y + L ER
Sbjct: 256 CAXGEYFAYSGRDALVVYDDLSKHAVAYRQLSLLXRRPPGREAYPGDIFYLHSRLLERAV 315
Query: 290 STKK----GSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDS 345
GS+T++ V A+D++ P + D + L + G PAI+ S
Sbjct: 316 RLNDKLGGGSLTALPIVETQANDISAYIPTNVISITDGQIYLEPGLFYAGQRPAINVGLS 375
Query: 346 TSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVARARKMQRF 405
SR + K ++A ++ L +Y+EL EL P + + R +++
Sbjct: 376 VSRVGGSAQI-KAXKQVAGXLRIDLAQYRELETFAQF--ATELDPATRAQIIRGQRLXEL 432
Query: 406 LSQ 408
L Q
Sbjct: 433 LKQ 435
>pdb|3VR6|D Chain D, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|E Chain E, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|F Chain F, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
Length = 465
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 108/439 (24%), Positives = 178/439 (40%), Gaps = 49/439 (11%)
Query: 6 IIQCIGSVVDVEFPHNMVPKIYNALKIENSEL----TLEVQQQLGDGIVRTIVLGTSEGL 61
I + +G ++ VE + + ++++N E+ LEVQ+ D + I GTS
Sbjct: 15 IKEVVGPLMAVEKVSGVKYEELIEVRMQNGEIRRGQVLEVQE---DKAMVQIFEGTSGIN 71
Query: 62 RRGTIVKNTGKPIMIPVGKATLGRIINVLGDPID-------EKG-NISNKYVSSIHRTPP 113
+ + V+ G P+ + V + +GR+ + LG P D EK +I+ + ++ I R P
Sbjct: 72 LKNSSVRFLGHPLQLGVSEDMIGRVFDGLGRPKDNGPEILPEKYLDINGEVINPIARDYP 131
Query: 114 XXXXXXXXXXXXXTGIKVIDLICPFSXXXXXXXXXXXXXXXXXNMMELINNIAKAHSGLS 173
TGI ID + EL IA+ + L
Sbjct: 132 DEFIQ--------TGISAIDHLNTLVRGQKLPVFSGSGLPHK----ELAAQIARQATVLD 179
Query: 174 -------VFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVA 226
VF +G E F + + ++ + M N+P+ R+
Sbjct: 180 SSDDFAVVFAAIGITFEEAEFFMEDFRQTGAID-------RSVMFMNLANDPAIERIATP 232
Query: 227 LTGLTIAEGFR-DEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQ 285
LT AE ++G VL + ++ Y A E+SA +P GY L + L
Sbjct: 233 RMALTAAEYLAYEKGMHVLVIMTDMTNYAEALREISAARREVPGRRGYPGYLYTNLATLF 292
Query: 286 ERIASTK--KGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPL 343
ER + KGS+T I + +P DD T P P T + ++L+R++ GI P ID L
Sbjct: 293 ERAGRIRGLKGSVTQIPILTMPEDDKTHPIPDLTGYITEGQIILTRELYKSGIQPPIDVL 352
Query: 344 DSTSRQLDPLI-VGKKHYKIARLVQSTLQRY---KELRDIISILGMDELSPEDKLLVARA 399
S SR D GK A + Y K+ +++ +LG LS DK+ A
Sbjct: 353 PSLSRLKDKGTGAGKTREDHAATMNQLFAAYAQGKQAKELAVVLGESALSDIDKIYAKFA 412
Query: 400 RKMQ-RFLSQPFHVAEVFT 417
+ + +++Q F+ T
Sbjct: 413 ERFENEYVNQGFYTNRTIT 431
>pdb|2RKW|A Chain A, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|2RKW|B Chain B, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3B2Q|A Chain A, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3B2Q|B Chain B, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3EIU|A Chain A, A Second Transient Position Of Atp On Its Trail To The
Nucleotide- Binding Site Of Subunit B Of The Motor
Protein A1ao Atp Synthase
pdb|3EIU|B Chain B, A Second Transient Position Of Atp On Its Trail To The
Nucleotide- Binding Site Of Subunit B Of The Motor
Protein A1ao Atp Synthase
Length = 469
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 8/204 (3%)
Query: 216 NEPSGNRLRVALTGLTIAEGFRDE-GKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQ 274
++P+ R+ LT AE E G VL + +I Y A ++ A +P GY
Sbjct: 223 DDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYP 282
Query: 275 PTLAEEMGYLQER--IASTKKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIA 332
+ ++ L ER I KGS+T I + +P DD+T P P + + +V++R++
Sbjct: 283 GYMYTDLATLYERAGIVKGAKGSVTQIPILSMPGDDITHPIPDLSGYITEGQIVVARELH 342
Query: 333 SLGIYPAIDPLDSTSRQLDPLIVGKK----HYKIARLVQSTLQRYKELRDIISILGMDEL 388
GIYP I+ L S SR ++ I K H ++ + + ++LR +++I+G + L
Sbjct: 343 RKGIYPPINVLPSLSRLMNSGIGAGKTREDHKAVSDQMYAGYAEGRDLRGLVAIVGKEAL 402
Query: 389 SPEDKLLVARARKMQ-RFLSQPFH 411
S D + A + +F+ Q ++
Sbjct: 403 SERDTKFLEFADLFEDKFVRQGWN 426
>pdb|3TIV|A Chain A, Crystal Structure Of Subunit B Mutant N157a Of The A1ao
Atp Synthase
pdb|3TIV|B Chain B, Crystal Structure Of Subunit B Mutant N157a Of The A1ao
Atp Synthase
Length = 460
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 99/410 (24%), Positives = 172/410 (41%), Gaps = 43/410 (10%)
Query: 6 IIQCIGSVVDVEFPHNMVPKIYNAL-KIENSELTLEVQQQL---GDGIVRTIVLGTSEGL 61
I Q G ++ VE P YN + I+ + T+ Q L D +V + GT GL
Sbjct: 8 ITQIAGPLIFVE---KTEPVGYNEIVNIKMGDGTVRRGQVLDSSADIVVVQVFEGTG-GL 63
Query: 62 RRGTIVKNTGKPIMIPVGKATLGRIINVLGDP--------IDEKGNISNKYVSSIHRTPP 113
+ V TG+ + +P LGRI++ G+P D+ +I+ ++ R PP
Sbjct: 64 DKDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLPP 123
Query: 114 XXXXXXXXXXXXXTGIKVIDLICPFSXXXXXXXXXXXXXXXXXNMMELIN--NIAKAHSG 171
TGI ID +++ ++ + S
Sbjct: 124 KDFIQ--------TGISTIDGTNTLVRGQKLPIFSASGLPHAEIALQIARQASVPGSESA 175
Query: 172 LSV-FTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQM-NEPSGNRLRVALTG 229
+V F +G E F + + +K + ++V+ + ++P+ R+
Sbjct: 176 FAVVFAAMGITNEEAQYF--------MSDFEKTGALERAVVFLNLADDPAVERIVTPRMA 227
Query: 230 LTIAEGFRDE-GKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQER- 287
LT AE E G VL + +I Y A ++ A +P GY + ++ L ER
Sbjct: 228 LTAAEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERA 287
Query: 288 -IASTKKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDST 346
I KGS+T I + +P DD+T P P + + +V++R++ GIYP I+ L S
Sbjct: 288 GIVKGAKGSVTQIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSL 347
Query: 347 SRQLDPLIVGKK----HYKIARLVQSTLQRYKELRDIISILGMDELSPED 392
SR ++ I K H ++ + + ++LR +++I+G + LS D
Sbjct: 348 SRLMNSGIGAGKTREDHKAVSDQMYAGYAEGRDLRGLVAIVGKEALSERD 397
>pdb|3TGW|A Chain A, Crystal Structure Of Subunit B Mutant H156a Of The A1ao
Atp Synthase
pdb|3TGW|B Chain B, Crystal Structure Of Subunit B Mutant H156a Of The A1ao
Atp Synthase
Length = 460
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 99/410 (24%), Positives = 172/410 (41%), Gaps = 43/410 (10%)
Query: 6 IIQCIGSVVDVEFPHNMVPKIYNAL-KIENSELTLEVQQQL---GDGIVRTIVLGTSEGL 61
I Q G ++ VE P YN + I+ + T+ Q L D +V + GT GL
Sbjct: 8 ITQIAGPLIFVE---KTEPVGYNEIVNIKMGDGTVRRGQVLDSSADIVVVQVFEGTG-GL 63
Query: 62 RRGTIVKNTGKPIMIPVGKATLGRIINVLGDP--------IDEKGNISNKYVSSIHRTPP 113
+ V TG+ + +P LGRI++ G+P D+ +I+ ++ R PP
Sbjct: 64 DKDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLPP 123
Query: 114 XXXXXXXXXXXXXTGIKVIDLICPFSXXXXXXXXXXXXXXXXXNMMELIN--NIAKAHSG 171
TGI ID +++ ++ + S
Sbjct: 124 KDFIQ--------TGISTIDGTNTLVRGQKLPIFSASGLPANEIALQIARQASVPGSESA 175
Query: 172 LSV-FTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQM-NEPSGNRLRVALTG 229
+V F +G E F + + +K + ++V+ + ++P+ R+
Sbjct: 176 FAVVFAAMGITNEEAQYF--------MSDFEKTGALERAVVFLNLADDPAVERIVTPRMA 227
Query: 230 LTIAEGFRDE-GKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQER- 287
LT AE E G VL + +I Y A ++ A +P GY + ++ L ER
Sbjct: 228 LTAAEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERA 287
Query: 288 -IASTKKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDST 346
I KGS+T I + +P DD+T P P + + +V++R++ GIYP I+ L S
Sbjct: 288 GIVKGAKGSVTQIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSL 347
Query: 347 SRQLDPLIVGKK----HYKIARLVQSTLQRYKELRDIISILGMDELSPED 392
SR ++ I K H ++ + + ++LR +++I+G + LS D
Sbjct: 348 SRLMNSGIGAGKTREDHKAVSDQMYAGYAEGRDLRGLVAIVGKEALSERD 397
>pdb|3SSA|A Chain A, Crystal Structure Of Subunit B Mutant N157t Of The A1ao
Atp Synthase
pdb|3SSA|B Chain B, Crystal Structure Of Subunit B Mutant N157t Of The A1ao
Atp Synthase
Length = 460
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 99/410 (24%), Positives = 172/410 (41%), Gaps = 43/410 (10%)
Query: 6 IIQCIGSVVDVEFPHNMVPKIYNAL-KIENSELTLEVQQQL---GDGIVRTIVLGTSEGL 61
I Q G ++ VE P YN + I+ + T+ Q L D +V + GT GL
Sbjct: 8 ITQIAGPLIFVE---KTEPVGYNEIVNIKMGDGTVRRGQVLDSSADIVVVQVFEGTG-GL 63
Query: 62 RRGTIVKNTGKPIMIPVGKATLGRIINVLGDP--------IDEKGNISNKYVSSIHRTPP 113
+ V TG+ + +P LGRI++ G+P D+ +I+ ++ R PP
Sbjct: 64 DKDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLPP 123
Query: 114 XXXXXXXXXXXXXTGIKVIDLICPFSXXXXXXXXXXXXXXXXXNMMELIN--NIAKAHSG 171
TGI ID +++ ++ + S
Sbjct: 124 KDFIQ--------TGISTIDGTNTLVRGQKLPIFSASGLPHTEIALQIARQASVPGSESA 175
Query: 172 LSV-FTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQM-NEPSGNRLRVALTG 229
+V F +G E F + + +K + ++V+ + ++P+ R+
Sbjct: 176 FAVVFAAMGITNEEAQYF--------MSDFEKTGALERAVVFLNLADDPAVERIVTPRMA 227
Query: 230 LTIAEGFRDE-GKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQER- 287
LT AE E G VL + +I Y A ++ A +P GY + ++ L ER
Sbjct: 228 LTAAEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERA 287
Query: 288 -IASTKKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDST 346
I KGS+T I + +P DD+T P P + + +V++R++ GIYP I+ L S
Sbjct: 288 GIVKGAKGSVTQIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSL 347
Query: 347 SRQLDPLIVGKK----HYKIARLVQSTLQRYKELRDIISILGMDELSPED 392
SR ++ I K H ++ + + ++LR +++I+G + LS D
Sbjct: 348 SRLMNSGIGAGKTREDHKAVSDQMYAGYAEGRDLRGLVAIVGKEALSERD 397
>pdb|2C61|A Chain A, Crystal Structure Of The Non-Catalytic B Subunit Of A-Type
Atpase From M. Mazei Go1
pdb|2C61|B Chain B, Crystal Structure Of The Non-Catalytic B Subunit Of A-Type
Atpase From M. Mazei Go1
pdb|3DSR|A Chain A, Adp In Transition Binding Site In The Subunit B Of The
Energy Converter A1ao Atp Synthase
pdb|3DSR|B Chain B, Adp In Transition Binding Site In The Subunit B Of The
Energy Converter A1ao Atp Synthase
Length = 469
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 90/184 (48%), Gaps = 7/184 (3%)
Query: 216 NEPSGNRLRVALTGLTIAEGFRDE-GKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQ 274
++P+ R+ LT AE E G VL + +I Y A ++ A +P GY
Sbjct: 223 DDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYP 282
Query: 275 PTLAEEMGYLQER--IASTKKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIA 332
+ ++ L ER I KGS+T I + +P DD+T P P + + +V++R++
Sbjct: 283 GYMYTDLATLYERAGIVKGAKGSVTQIPILSMPGDDITHPIPDLSGYITEGQIVVARELH 342
Query: 333 SLGIYPAIDPLDSTSRQLDPLIVGKK----HYKIARLVQSTLQRYKELRDIISILGMDEL 388
GIYP I+ L S SR ++ I K H ++ + + ++LR +++I+G + L
Sbjct: 343 RKGIYPPINVLPSLSRLMNSGIGAGKTREDHKAVSDQMYAGYAEGRDLRGLVAIVGKEAL 402
Query: 389 SPED 392
S D
Sbjct: 403 SERD 406
>pdb|3VR2|D Chain D, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|E Chain E, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|F Chain F, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR3|D Chain D, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|E Chain E, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|F Chain F, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR4|D Chain D, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|E Chain E, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|F Chain F, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR5|D Chain D, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|E Chain E, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|F Chain F, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
Length = 465
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 91/210 (43%), Gaps = 8/210 (3%)
Query: 216 NEPSGNRLRVALTGLTIAEGFR-DEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQ 274
N+P+ R+ LT AE ++G VL + Y A E+SA +P GY
Sbjct: 222 NDPAIERIATPRXALTAAEYLAYEKGXHVLVIXTDXTNYAEALREISAARREVPGRRGYP 281
Query: 275 PTLAEEMGYLQERIASTK--KGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIA 332
L + L ER + KGS+T I + P DD T P P T + ++L+R++
Sbjct: 282 GYLYTNLATLFERAGRIRGLKGSVTQIPILTXPEDDKTHPIPDLTGYITEGQIILTRELY 341
Query: 333 SLGIYPAIDPLDSTSRQLDPLI-VGKKHYKIARLVQSTLQRY---KELRDIISILGMDEL 388
GI P ID L S SR D GK A Y K+ +++ +LG L
Sbjct: 342 KSGIQPPIDVLPSLSRLKDKGTGAGKTREDHAATXNQLFAAYAQGKQAKELAVVLGESAL 401
Query: 389 SPEDKLLVARARKMQ-RFLSQPFHVAEVFT 417
S DK+ A + + +++Q F+ T
Sbjct: 402 SDIDKIYAKFAERFENEYVNQGFYTNRTIT 431
>pdb|2HT1|A Chain A, The Closed Ring Structure Of The Rho Transcription
Termination Factor In Complex With Nucleic Acid In The
Motor Domains
pdb|2HT1|B Chain B, The Closed Ring Structure Of The Rho Transcription
Termination Factor In Complex With Nucleic Acid In The
Motor Domains
Length = 433
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 70/179 (39%), Gaps = 12/179 (6%)
Query: 207 KVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGR 266
K +V +EP+ ++VA + A+ + KDV+ +D+I R A V G+
Sbjct: 246 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 305
Query: 267 MPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQAVYVPADDLTDPSPATTFAHL-DSTV 325
+ + L + + GS+T I + D F + +
Sbjct: 306 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 365
Query: 326 VLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILG 384
LSR IA ++PAID S +R+ + L Q LQ+ LR II +G
Sbjct: 366 HLSRKIAEKRVFPAIDYNRSGTRKEELLT-----------TQEELQKMWILRKIIHPMG 413
>pdb|1PVO|A Chain A, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|B Chain B, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|C Chain C, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|D Chain D, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|E Chain E, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|F Chain F, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1XPR|A Chain A, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|B Chain B, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|C Chain C, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|D Chain D, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|E Chain E, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|F Chain F, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPU|A Chain A, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|B Chain B, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|C Chain C, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|D Chain D, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|E Chain E, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|F Chain F, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPO|A Chain A, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|B Chain B, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|C Chain C, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|D Chain D, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|E Chain E, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|F Chain F, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
Length = 419
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 70/179 (39%), Gaps = 12/179 (6%)
Query: 207 KVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGR 266
K +V +EP+ ++VA + A+ + KDV+ +D+I R A V G+
Sbjct: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 267 MPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQAVYVPADDLTDPSPATTFAHL-DSTV 325
+ + L + + GS+T I + D F + +
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 326 VLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILG 384
LSR IA ++PAID S +R+ + L Q LQ+ LR II +G
Sbjct: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLT-----------TQEELQKMWILRKIIHPMG 391
>pdb|3ICE|A Chain A, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|B Chain B, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|C Chain C, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|D Chain D, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|E Chain E, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|F Chain F, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
Length = 422
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 69/179 (38%), Gaps = 12/179 (6%)
Query: 207 KVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGR 266
K +V +EP+ ++VA + A+ + KDV+ +D+I R A V G+
Sbjct: 227 KGEVVASTFDEPASRHVQVAEXVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 286
Query: 267 MPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQAVYVPADDLTDPSPATTFAHL-DSTV 325
+ + L + + GS+T I + D F + +
Sbjct: 287 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKXDEVIYEEFKGTGNXEL 346
Query: 326 VLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILG 384
LSR IA ++PAID S +R+ + L Q LQ+ LR II G
Sbjct: 347 HLSRKIAEKRVFPAIDYNRSGTRKEELLT-----------TQEELQKXWILRKIIHPXG 394
>pdb|1PV4|A Chain A, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|B Chain B, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|C Chain C, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|D Chain D, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|E Chain E, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|F Chain F, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
Length = 419
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 69/179 (38%), Gaps = 12/179 (6%)
Query: 207 KVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGR 266
K +V +EP+ ++VA + A+ + KDV+ +D+I R A V G+
Sbjct: 224 KGEVVASTFDEPASRHVQVAEXVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 267 MPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQAVYVPADDLTDPSPATTFAHL-DSTV 325
+ + L + + GS+T I + D F + +
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKXDEVIYEEFKGTGNXEL 343
Query: 326 VLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILG 384
LSR IA ++PAID S +R+ + L Q LQ+ LR II G
Sbjct: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLT-----------TQEELQKXWILRKIIHPXG 391
>pdb|3L0O|A Chain A, Structure Of Rna-Free Rho Transcription Termination Factor
From Thermotoga Maritima
pdb|3L0O|B Chain B, Structure Of Rna-Free Rho Transcription Termination Factor
From Thermotoga Maritima
Length = 427
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 86/230 (37%), Gaps = 32/230 (13%)
Query: 130 KVIDLICPFSXXXXXXXXXXXXXXXXXNMMELINNIAKAH-SGLSVFTGVGERTREGNDF 188
++IDL P + E+ N IA+ H + + + ER E D
Sbjct: 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDERPEEVTDI 223
Query: 189 YHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFID 248
E + ++ + P +++VA L +A+ + DV+ +D
Sbjct: 224 R--------------ESTNAIVIAAPFDMPPDKQVKVAELTLEMAKRLVEFNYDVVILLD 269
Query: 249 NIYR----YTLAGTEVSALL-GRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQAVY 303
++ R Y + LL G + A Y+P + + + GS+T I
Sbjct: 270 SLTRLARVYNIVVPPSGKLLTGGVDPAALYKPK-----RFFGAARNTREGGSLTIIATAL 324
Query: 304 VPADDLTDPSPATTFAHLDST----VVLSRDIASLGIYPAIDPLDSTSRQ 349
V D F T +VLSR +A+ I+PAI+ L S +R+
Sbjct: 325 VETGSKMD---EVIFEEFKGTGNMELVLSRQLANKRIFPAINLLLSGTRR 371
>pdb|1JJO|C Chain C, Crystal Structure Of Mouse Neuroserpin (Cleaved Form)
pdb|1JJO|D Chain D, Crystal Structure Of Mouse Neuroserpin (Cleaved Form)
Length = 261
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 31/53 (58%)
Query: 369 TLQRYKELRDIISILGMDELSPEDKLLVARARKMQRFLSQPFHVAEVFTGKSG 421
T+++ +L+DI+ LG+ E+ +D L A + K + FLS+ H + + + G
Sbjct: 196 TVEQEIDLKDILKALGVTEIFIKDANLTAMSDKKELFLSKAVHKSCIEVNEEG 248
>pdb|2BWO|B Chain B, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
pdb|2BWO|D Chain D, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
pdb|2BWO|E Chain E, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
pdb|2BWP|A Chain A, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
pdb|2BWP|B Chain B, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
pdb|2BWP|D Chain D, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
pdb|2BWP|E Chain E, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
Length = 401
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 179 GERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTI 232
G R G YH +EA++ L + E + V N+ + + LRV GL I
Sbjct: 82 GTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLFPGLII 135
>pdb|2BWN|A Chain A, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWN|B Chain B, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWN|D Chain D, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWN|E Chain E, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWO|A Chain A, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
Length = 401
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 179 GERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTI 232
G R G YH +EA++ L + E + V N+ + + LRV GL I
Sbjct: 82 GTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLFPGLII 135
>pdb|3NVK|A Chain A, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
pdb|3NVK|F Chain F, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
Length = 376
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 15/109 (13%)
Query: 357 KKHYKIA-RLVQSTLQRYKELRDIISILGMDELSPEDK---LLVARARKMQRFLSQPFHV 412
+++YK+ L + +Q RD + I ++ L DK LLVAR R+ + S F
Sbjct: 116 EEYYKVGVALTRMRIQEQSGARDKMVIQAIEALDDVDKVINLLVARLRE---WYSLHFPE 172
Query: 413 AEVFTGKSGKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAIKK 461
+ K +YV+ T+ G DNI E+ +G +E IKK
Sbjct: 173 LDELLPKHPQYVAFVKTV--------GHRDNINEEVLRELGLSEEKIKK 213
>pdb|2NNW|A Chain A, Alternative Conformations Of Nop56/58-fibrillarin Complex
And Implication For Induced-fit Assenly Of Box C/d Rnps
pdb|2NNW|C Chain C, Alternative Conformations Of Nop56/58-fibrillarin Complex
And Implication For Induced-fit Assenly Of Box C/d Rnps
Length = 376
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 15/109 (13%)
Query: 357 KKHYKIA-RLVQSTLQRYKELRDIISILGMDELSPEDK---LLVARARKMQRFLSQPFHV 412
+++YK+ L + +Q RD + I ++ L DK LLVAR R+ + S F
Sbjct: 116 EEYYKVGVALTRMRIQEQSGARDKMVIQAIEALDDVDKVINLLVARLRE---WYSLHFPE 172
Query: 413 AEVFTGKSGKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAIKK 461
+ K +YV+ T+ G DNI E+ +G +E IKK
Sbjct: 173 LDELLPKHPQYVAFVKTV--------GHRDNINEEVLRELGLSEEKIKK 213
>pdb|3NMU|A Chain A, Crystal Structure Of Substrate-Bound Halfmer Box CD RNP
pdb|3NMU|B Chain B, Crystal Structure Of Substrate-Bound Halfmer Box CD RNP
pdb|3NVI|A Chain A, Structure Of N-Terminal Truncated Nop5658 BOUND WITH L7AE
AND BOX CD Rna
pdb|3NVI|C Chain C, Structure Of N-Terminal Truncated Nop5658 BOUND WITH L7AE
AND BOX CD Rna
Length = 379
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 15/109 (13%)
Query: 357 KKHYKIA-RLVQSTLQRYKELRDIISILGMDELSPEDK---LLVARARKMQRFLSQPFHV 412
+++YK+ L + +Q RD + I ++ L DK LLVAR R+ + S F
Sbjct: 116 EEYYKVGVALTRMRIQEQSGARDKMVIQAIEALDDVDKVINLLVARLRE---WYSLHFPE 172
Query: 413 AEVFTGKSGKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAIKK 461
+ K +YV+ T+ G DNI E+ +G +E IKK
Sbjct: 173 LDELLPKHPQYVAFVKTV--------GHRDNINEEVLRELGLSEEKIKK 213
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,405,432
Number of Sequences: 62578
Number of extensions: 501854
Number of successful extensions: 1485
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1253
Number of HSP's gapped (non-prelim): 113
length of query: 467
length of database: 14,973,337
effective HSP length: 102
effective length of query: 365
effective length of database: 8,590,381
effective search space: 3135489065
effective search space used: 3135489065
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)