Query psy2897
Match_columns 467
No_of_seqs 202 out of 1604
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 20:23:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2897.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2897hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fx0_B ATP synthase beta chain 100.0 2E-126 6E-131 1002.7 37.8 463 3-466 20-491 (498)
2 2ck3_D ATP synthase subunit be 100.0 3E-125 1E-129 989.4 46.5 463 2-466 13-478 (482)
3 1sky_E F1-ATPase, F1-ATP synth 100.0 4E-118 1E-122 938.1 44.3 459 1-466 1-470 (473)
4 3oaa_A ATP synthase subunit al 100.0 4E-111 1E-115 884.0 40.4 423 2-449 27-464 (513)
5 3vr4_D V-type sodium ATPase su 100.0 1E-110 3E-115 875.6 41.1 433 2-462 11-460 (465)
6 2c61_A A-type ATP synthase non 100.0 1E-110 4E-115 879.6 37.6 435 2-462 13-461 (469)
7 3gqb_B V-type ATP synthase bet 100.0 3E-110 9E-115 872.0 38.9 432 3-462 8-462 (464)
8 2r9v_A ATP synthase subunit al 100.0 6E-110 2E-114 877.6 40.1 423 2-449 39-466 (515)
9 2ck3_A ATP synthase subunit al 100.0 7E-110 2E-114 878.5 39.9 424 2-449 27-461 (510)
10 2qe7_A ATP synthase subunit al 100.0 8E-110 3E-114 876.7 37.4 422 2-449 27-453 (502)
11 1fx0_A ATP synthase alpha chai 100.0 1E-109 5E-114 875.7 29.7 422 2-449 28-454 (507)
12 3vr4_A V-type sodium ATPase ca 100.0 6E-106 2E-110 854.1 31.8 418 1-438 8-534 (600)
13 3gqb_A V-type ATP synthase alp 100.0 6E-106 2E-110 851.0 26.8 417 1-437 1-520 (578)
14 3mfy_A V-type ATP synthase alp 100.0 2E-105 5E-110 847.9 20.1 415 3-437 4-528 (588)
15 3l0o_A Transcription terminati 100.0 1.6E-78 5.6E-83 619.5 15.8 315 59-394 96-415 (427)
16 2dpy_A FLII, flagellum-specifi 100.0 2.9E-73 9.9E-78 598.0 32.7 412 2-438 9-436 (438)
17 3ice_A Transcription terminati 100.0 1.4E-74 4.8E-79 591.6 19.2 310 60-390 93-410 (422)
18 2obl_A ESCN; ATPase, hydrolase 100.0 6.9E-71 2.4E-75 564.0 23.7 344 73-438 2-347 (347)
19 2zts_A Putative uncharacterize 98.3 7.8E-06 2.7E-10 77.0 13.0 64 123-186 10-75 (251)
20 3io5_A Recombination and repai 98.2 2.1E-06 7.2E-11 86.2 8.8 111 123-254 5-124 (333)
21 3hr8_A Protein RECA; alpha and 98.0 8.7E-06 3E-10 83.0 7.7 110 123-254 40-152 (356)
22 2zr9_A Protein RECA, recombina 97.9 1.5E-05 5.2E-10 80.9 8.0 111 122-254 39-152 (349)
23 2z43_A DNA repair and recombin 97.9 2.3E-05 7.7E-10 78.4 8.5 120 122-256 86-218 (324)
24 1n0w_A DNA repair protein RAD5 97.9 2.7E-05 9.4E-10 73.0 8.2 43 123-165 4-48 (243)
25 1u94_A RECA protein, recombina 97.8 2.4E-05 8.3E-10 79.7 7.7 110 122-254 41-154 (356)
26 2cvh_A DNA repair and recombin 97.8 2.8E-05 9.7E-10 71.8 7.1 39 125-163 2-42 (220)
27 1xp8_A RECA protein, recombina 97.8 3.2E-05 1.1E-09 79.0 7.6 111 122-254 52-165 (366)
28 1v5w_A DMC1, meiotic recombina 97.8 5E-05 1.7E-09 76.6 8.5 46 122-167 101-148 (343)
29 4a74_A DNA repair and recombin 97.7 9.3E-05 3.2E-09 68.7 9.1 43 123-165 5-49 (231)
30 2i1q_A DNA repair and recombin 97.7 0.00014 4.6E-09 72.3 10.3 120 122-256 77-219 (322)
31 3lda_A DNA repair protein RAD5 97.7 6.6E-05 2.3E-09 77.6 7.8 46 121-166 156-203 (400)
32 2w0m_A SSO2452; RECA, SSPF, un 97.6 3.4E-05 1.2E-09 71.5 4.5 54 123-176 3-58 (235)
33 3bh0_A DNAB-like replicative h 97.6 0.00021 7.2E-09 71.1 9.9 47 123-169 49-96 (315)
34 1pzn_A RAD51, DNA repair and r 97.5 0.00012 4.2E-09 74.1 7.0 120 122-256 110-246 (349)
35 2ehv_A Hypothetical protein PH 97.5 6.7E-05 2.3E-09 70.6 4.7 44 123-166 10-55 (251)
36 2dr3_A UPF0273 protein PH0284; 97.5 6.4E-05 2.2E-09 70.6 4.0 54 123-176 3-58 (247)
37 3bs4_A Uncharacterized protein 97.4 0.00054 1.9E-08 66.7 9.6 192 124-346 2-230 (260)
38 2r6a_A DNAB helicase, replicat 97.1 0.0012 4.3E-08 68.8 9.9 54 123-176 184-239 (454)
39 3cmu_A Protein RECA, recombina 97.0 0.00065 2.2E-08 82.3 6.4 111 122-254 361-474 (2050)
40 3cmw_A Protein RECA, recombina 97.0 0.00075 2.6E-08 80.7 6.8 111 122-254 361-474 (1706)
41 3cmu_A Protein RECA, recombina 96.9 0.0009 3.1E-08 81.1 6.5 111 121-254 1404-1518(2050)
42 1cr0_A DNA primase/helicase; R 96.9 0.0006 2.1E-08 66.5 4.1 54 123-176 15-71 (296)
43 2q6t_A DNAB replication FORK h 96.9 0.0032 1.1E-07 65.5 9.7 46 123-168 181-227 (444)
44 1nlf_A Regulatory protein REPA 96.8 0.00068 2.3E-08 65.7 4.3 47 121-167 9-56 (279)
45 1tf7_A KAIC; homohexamer, hexa 96.8 0.0072 2.5E-07 64.2 12.6 47 122-168 260-308 (525)
46 3cmw_A Protein RECA, recombina 96.8 0.00071 2.4E-08 80.9 5.1 110 122-254 710-823 (1706)
47 2vhj_A Ntpase P4, P4; non- hyd 96.7 0.0018 6.1E-08 65.1 6.3 44 121-164 102-146 (331)
48 1q57_A DNA primase/helicase; d 96.7 0.0025 8.6E-08 67.2 7.5 46 123-168 222-269 (503)
49 3bgw_A DNAB-like replicative h 96.3 0.0016 5.5E-08 68.0 2.9 58 122-181 177-235 (444)
50 4a1f_A DNAB helicase, replicat 96.3 0.0019 6.7E-08 65.1 3.4 59 123-183 27-86 (338)
51 2v1u_A Cell division control p 96.3 0.015 5.1E-07 57.7 9.7 29 139-167 42-70 (387)
52 2qby_A CDC6 homolog 1, cell di 95.9 0.021 7.3E-07 56.4 8.7 98 139-255 43-142 (386)
53 2yhs_A FTSY, cell division pro 95.8 0.019 6.6E-07 60.7 8.6 40 136-175 288-327 (503)
54 1tf7_A KAIC; homohexamer, hexa 95.7 0.0057 2E-07 64.9 4.1 45 123-167 19-66 (525)
55 1zp6_A Hypothetical protein AT 95.6 0.0044 1.5E-07 55.8 2.4 29 135-163 3-31 (191)
56 3ec2_A DNA replication protein 95.3 0.0099 3.4E-07 53.2 3.6 29 138-166 35-63 (180)
57 1znw_A Guanylate kinase, GMP k 95.2 0.0075 2.6E-07 55.6 2.5 29 136-164 15-43 (207)
58 3tr0_A Guanylate kinase, GMP k 95.2 0.0085 2.9E-07 54.4 2.8 27 138-164 4-30 (205)
59 1fnn_A CDC6P, cell division co 95.1 0.079 2.7E-06 52.6 9.7 96 139-253 40-137 (389)
60 1z6g_A Guanylate kinase; struc 95.0 0.0091 3.1E-07 55.8 2.5 29 136-164 18-46 (218)
61 4eun_A Thermoresistant glucoki 95.0 0.0098 3.3E-07 54.4 2.7 41 125-165 13-53 (200)
62 1w5s_A Origin recognition comp 95.0 0.11 3.8E-06 52.0 10.7 96 140-254 49-151 (412)
63 3c8u_A Fructokinase; YP_612366 95.0 0.021 7.2E-07 52.6 4.9 29 138-166 19-47 (208)
64 3dm5_A SRP54, signal recogniti 95.0 0.16 5.6E-06 52.9 12.1 38 139-176 98-135 (443)
65 2kjq_A DNAA-related protein; s 94.9 0.018 6.2E-07 50.7 4.1 28 140-167 35-62 (149)
66 2z4s_A Chromosomal replication 94.9 0.025 8.6E-07 58.7 5.8 32 141-172 130-161 (440)
67 1jbk_A CLPB protein; beta barr 94.7 0.056 1.9E-06 47.3 6.8 29 139-167 41-69 (195)
68 2eyu_A Twitching motility prot 94.7 0.02 6.8E-07 55.4 4.1 37 131-168 16-52 (261)
69 1l8q_A Chromosomal replication 94.7 0.054 1.8E-06 53.1 7.3 29 140-168 36-64 (324)
70 2j41_A Guanylate kinase; GMP, 94.7 0.014 4.8E-07 52.9 2.8 28 137-164 2-29 (207)
71 2chg_A Replication factor C sm 94.6 0.1 3.5E-06 46.8 8.4 27 141-167 38-64 (226)
72 1htw_A HI0065; nucleotide-bind 94.6 0.015 5.2E-07 52.0 2.7 30 136-165 28-57 (158)
73 3lnc_A Guanylate kinase, GMP k 94.6 0.013 4.5E-07 54.8 2.4 28 137-164 23-51 (231)
74 3tif_A Uncharacterized ABC tra 94.6 0.012 4E-07 56.0 2.1 34 130-163 19-53 (235)
75 2qm8_A GTPase/ATPase; G protei 94.6 0.028 9.5E-07 56.3 4.9 47 130-176 43-90 (337)
76 2v9p_A Replication protein E1; 94.5 0.013 4.4E-07 58.2 2.2 32 134-165 119-150 (305)
77 3e70_C DPA, signal recognition 94.5 0.22 7.7E-06 49.7 11.2 40 137-176 125-164 (328)
78 1zu4_A FTSY; GTPase, signal re 94.5 0.25 8.5E-06 49.1 11.5 40 137-176 101-140 (320)
79 4gp7_A Metallophosphoesterase; 94.4 0.013 4.5E-07 52.5 1.9 25 136-160 4-28 (171)
80 3b9q_A Chloroplast SRP recepto 94.4 0.03 1E-06 55.4 4.6 39 137-175 96-134 (302)
81 2pcj_A ABC transporter, lipopr 94.4 0.013 4.3E-07 55.3 1.7 29 135-163 24-52 (224)
82 2cbz_A Multidrug resistance-as 94.4 0.014 4.8E-07 55.5 2.1 30 135-164 25-54 (237)
83 1z6t_A APAF-1, apoptotic prote 94.4 0.048 1.6E-06 57.9 6.4 43 139-181 145-190 (591)
84 1vma_A Cell division protein F 94.4 0.28 9.6E-06 48.5 11.5 39 138-176 101-139 (306)
85 2ff7_A Alpha-hemolysin translo 94.3 0.015 5.1E-07 55.8 2.0 30 135-164 29-58 (247)
86 1b0u_A Histidine permease; ABC 94.2 0.016 5.4E-07 56.1 2.1 33 131-163 21-54 (262)
87 2p65_A Hypothetical protein PF 94.2 0.067 2.3E-06 46.8 6.1 29 139-167 41-69 (187)
88 1j8m_F SRP54, signal recogniti 94.2 0.28 9.5E-06 48.2 11.1 46 139-184 96-141 (297)
89 1kgd_A CASK, peripheral plasma 94.2 0.02 7E-07 51.5 2.7 25 140-164 4-28 (180)
90 1g6h_A High-affinity branched- 94.2 0.016 5.5E-07 55.7 2.1 34 130-163 21-55 (257)
91 2jeo_A Uridine-cytidine kinase 94.2 0.019 6.6E-07 54.3 2.6 29 136-164 20-48 (245)
92 3gfo_A Cobalt import ATP-bindi 94.2 0.015 5.3E-07 56.7 1.9 34 130-163 22-56 (275)
93 4g1u_C Hemin import ATP-bindin 94.2 0.016 5.3E-07 56.3 1.9 34 130-163 25-59 (266)
94 2d2e_A SUFC protein; ABC-ATPas 94.2 0.019 6.5E-07 55.0 2.5 29 135-163 23-51 (250)
95 1rz3_A Hypothetical protein rb 94.2 0.042 1.4E-06 50.3 4.7 39 137-175 18-56 (201)
96 2zu0_C Probable ATP-dependent 94.2 0.02 6.8E-07 55.5 2.6 34 130-163 34-68 (267)
97 1lvg_A Guanylate kinase, GMP k 94.1 0.019 6.4E-07 52.8 2.3 26 140-165 3-28 (198)
98 1vpl_A ABC transporter, ATP-bi 94.1 0.017 5.8E-07 55.8 2.1 33 131-163 30-63 (256)
99 3fvq_A Fe(3+) IONS import ATP- 94.1 0.019 6.4E-07 58.4 2.4 35 129-163 17-52 (359)
100 2olj_A Amino acid ABC transpor 94.1 0.017 5.9E-07 56.0 2.1 33 131-163 39-72 (263)
101 1sgw_A Putative ABC transporte 94.1 0.016 5.6E-07 54.4 1.8 28 136-163 30-57 (214)
102 1mv5_A LMRA, multidrug resista 94.1 0.018 6.1E-07 54.9 2.0 29 136-164 23-51 (243)
103 2pze_A Cystic fibrosis transme 94.0 0.018 6.1E-07 54.5 2.0 30 135-164 28-57 (229)
104 1ji0_A ABC transporter; ATP bi 94.0 0.018 6.2E-07 54.8 2.0 28 136-163 27-54 (240)
105 3bos_A Putative DNA replicatio 94.0 0.026 8.9E-07 51.9 3.0 31 138-168 49-79 (242)
106 2ixe_A Antigen peptide transpo 94.0 0.019 6.5E-07 55.8 2.1 30 135-164 39-68 (271)
107 1rj9_A FTSY, signal recognitio 94.0 0.039 1.3E-06 54.6 4.4 36 139-174 100-135 (304)
108 2ghi_A Transport protein; mult 94.0 0.019 6.5E-07 55.4 2.1 30 135-164 40-69 (260)
109 2yvu_A Probable adenylyl-sulfa 94.0 0.053 1.8E-06 48.6 4.9 44 132-175 4-47 (186)
110 3te6_A Regulatory protein SIR3 93.9 0.11 3.8E-06 51.7 7.6 30 138-167 42-71 (318)
111 2ihy_A ABC transporter, ATP-bi 93.9 0.019 6.5E-07 56.1 2.0 33 131-163 36-69 (279)
112 3rlf_A Maltose/maltodextrin im 93.9 0.023 7.9E-07 58.2 2.6 35 129-163 16-51 (381)
113 3asz_A Uridine kinase; cytidin 93.9 0.024 8.4E-07 51.8 2.5 28 138-165 3-30 (211)
114 3pvs_A Replication-associated 93.9 0.07 2.4E-06 55.6 6.2 26 140-165 49-74 (447)
115 2qi9_C Vitamin B12 import ATP- 93.8 0.02 6.9E-07 55.0 2.0 29 135-163 20-48 (249)
116 2yz2_A Putative ABC transporte 93.8 0.021 7.2E-07 55.3 2.1 28 136-163 28-55 (266)
117 3vaa_A Shikimate kinase, SK; s 93.8 0.03 1E-06 51.1 3.0 29 137-165 21-49 (199)
118 2nq2_C Hypothetical ABC transp 93.8 0.021 7.1E-07 55.0 1.9 33 131-163 20-53 (253)
119 1z47_A CYSA, putative ABC-tran 93.8 0.024 8.2E-07 57.5 2.5 31 133-163 33-63 (355)
120 2yyz_A Sugar ABC transporter, 93.8 0.025 8.5E-07 57.4 2.6 33 131-163 18-51 (359)
121 2og2_A Putative signal recogni 93.8 0.047 1.6E-06 55.4 4.6 38 137-174 153-190 (359)
122 3uk6_A RUVB-like 2; hexameric 93.7 0.18 6E-06 50.0 8.7 26 141-166 70-95 (368)
123 2it1_A 362AA long hypothetical 93.7 0.026 8.8E-07 57.4 2.6 33 131-163 18-51 (362)
124 1v43_A Sugar-binding transport 93.7 0.026 8.8E-07 57.6 2.6 33 131-163 26-59 (372)
125 1g29_1 MALK, maltose transport 93.7 0.026 9E-07 57.5 2.5 33 131-163 18-51 (372)
126 1sq5_A Pantothenate kinase; P- 93.6 0.043 1.5E-06 54.0 4.0 40 137-176 76-117 (308)
127 3b85_A Phosphate starvation-in 93.5 0.028 9.6E-07 52.5 2.3 34 138-172 19-52 (208)
128 3tui_C Methionine import ATP-b 93.4 0.031 1.1E-06 56.9 2.6 35 129-163 41-76 (366)
129 3uie_A Adenylyl-sulfate kinase 93.4 0.057 1.9E-06 49.2 4.1 29 138-166 22-50 (200)
130 2qt1_A Nicotinamide riboside k 93.4 0.035 1.2E-06 50.7 2.7 28 136-163 16-43 (207)
131 3gd7_A Fusion complex of cysti 93.4 0.031 1.1E-06 57.4 2.4 34 130-163 35-69 (390)
132 3v9p_A DTMP kinase, thymidylat 93.3 0.87 3E-05 42.9 12.4 96 138-258 22-128 (227)
133 2qby_B CDC6 homolog 3, cell di 93.3 0.17 5.8E-06 50.2 7.9 29 139-167 43-71 (384)
134 3kl4_A SRP54, signal recogniti 93.3 0.23 8E-06 51.5 9.1 44 139-182 95-138 (433)
135 3d31_A Sulfate/molybdate ABC t 93.3 0.022 7.6E-07 57.5 1.3 30 134-163 19-48 (348)
136 1y63_A LMAJ004144AAA protein; 93.3 0.044 1.5E-06 49.4 3.1 28 137-164 6-33 (184)
137 1pui_A ENGB, probable GTP-bind 93.2 0.02 6.7E-07 52.0 0.7 33 130-163 16-48 (210)
138 2i3b_A HCR-ntpase, human cance 93.2 0.033 1.1E-06 51.2 2.2 26 141-166 1-26 (189)
139 3a00_A Guanylate kinase, GMP k 93.2 0.035 1.2E-06 50.1 2.3 25 141-165 1-25 (186)
140 3aez_A Pantothenate kinase; tr 93.1 0.041 1.4E-06 54.6 2.8 30 137-166 86-115 (312)
141 2a5y_B CED-4; apoptosis; HET: 93.1 0.095 3.2E-06 55.7 5.8 52 141-192 152-207 (549)
142 1s96_A Guanylate kinase, GMP k 93.0 0.04 1.4E-06 51.8 2.5 27 138-164 13-39 (219)
143 1knq_A Gluconate kinase; ALFA/ 93.0 0.044 1.5E-06 48.5 2.7 26 139-164 6-31 (175)
144 2bbs_A Cystic fibrosis transme 93.0 0.032 1.1E-06 54.8 1.9 29 136-164 59-87 (290)
145 2orw_A Thymidine kinase; TMTK, 93.0 0.075 2.6E-06 48.4 4.3 36 140-175 2-37 (184)
146 1kag_A SKI, shikimate kinase I 93.0 0.042 1.4E-06 48.4 2.4 25 140-164 3-27 (173)
147 3tau_A Guanylate kinase, GMP k 92.9 0.045 1.5E-06 50.4 2.7 26 139-164 6-31 (208)
148 2pjz_A Hypothetical protein ST 92.9 0.036 1.2E-06 53.7 2.0 28 136-164 26-53 (263)
149 1oxx_K GLCV, glucose, ABC tran 92.9 0.023 7.9E-07 57.5 0.6 30 134-163 24-53 (353)
150 3ney_A 55 kDa erythrocyte memb 92.8 0.054 1.8E-06 50.3 3.0 29 136-164 14-42 (197)
151 3nh6_A ATP-binding cassette SU 92.8 0.026 8.9E-07 56.0 0.9 36 129-164 67-103 (306)
152 2wwf_A Thymidilate kinase, put 92.8 0.1 3.5E-06 47.4 4.8 35 138-172 7-41 (212)
153 2qor_A Guanylate kinase; phosp 92.6 0.056 1.9E-06 49.4 2.8 27 138-164 9-35 (204)
154 3cm0_A Adenylate kinase; ATP-b 92.5 0.056 1.9E-06 48.1 2.7 26 140-165 3-28 (186)
155 1t9h_A YLOQ, probable GTPase E 92.5 0.022 7.6E-07 56.6 -0.1 32 132-163 164-195 (307)
156 1njg_A DNA polymerase III subu 92.5 0.26 8.8E-06 44.5 7.2 25 143-167 47-71 (250)
157 2bdt_A BH3686; alpha-beta prot 92.5 0.05 1.7E-06 48.9 2.3 23 141-163 2-24 (189)
158 2w58_A DNAI, primosome compone 92.4 0.11 3.7E-06 47.0 4.5 27 142-168 55-81 (202)
159 1kht_A Adenylate kinase; phosp 92.4 0.094 3.2E-06 46.5 4.0 27 140-166 2-28 (192)
160 1nn5_A Similar to deoxythymidy 92.4 0.11 3.8E-06 47.1 4.6 31 138-168 6-36 (215)
161 1yqt_A RNAse L inhibitor; ATP- 92.4 0.064 2.2E-06 57.2 3.4 33 131-163 37-69 (538)
162 1ye8_A Protein THEP1, hypothet 92.4 0.056 1.9E-06 49.0 2.5 23 143-165 2-24 (178)
163 1ls1_A Signal recognition part 92.3 0.69 2.4E-05 45.2 10.4 38 140-177 97-134 (295)
164 1d2n_A N-ethylmaleimide-sensit 92.2 0.39 1.3E-05 45.6 8.3 25 140-164 63-87 (272)
165 2ffh_A Protein (FFH); SRP54, s 92.1 0.69 2.4E-05 47.8 10.6 38 140-177 97-134 (425)
166 2onk_A Molybdate/tungstate ABC 92.1 0.062 2.1E-06 51.2 2.5 30 133-163 17-46 (240)
167 2bbw_A Adenylate kinase 4, AK4 92.1 0.063 2.2E-06 50.6 2.5 25 140-164 26-50 (246)
168 2npi_A Protein CLP1; CLP1-PCF1 92.0 0.055 1.9E-06 56.7 2.2 34 134-167 131-164 (460)
169 2x8a_A Nuclear valosin-contain 92.0 0.063 2.2E-06 52.0 2.5 26 137-164 42-67 (274)
170 1cke_A CK, MSSA, protein (cyti 92.0 0.071 2.4E-06 49.0 2.7 24 141-164 5-28 (227)
171 1ixz_A ATP-dependent metallopr 92.0 0.064 2.2E-06 50.6 2.5 26 137-164 47-72 (254)
172 2yv5_A YJEQ protein; hydrolase 91.9 0.044 1.5E-06 53.9 1.3 32 131-162 155-186 (302)
173 3j16_B RLI1P; ribosome recycli 91.8 0.081 2.8E-06 57.3 3.4 33 131-163 93-125 (608)
174 2b8t_A Thymidine kinase; deoxy 91.8 0.14 4.9E-06 48.3 4.7 43 139-181 10-53 (223)
175 4b4t_J 26S protease regulatory 91.8 0.24 8.1E-06 51.1 6.6 22 144-165 185-206 (405)
176 1lw7_A Transcriptional regulat 91.8 0.062 2.1E-06 54.0 2.2 27 138-164 165-193 (365)
177 2www_A Methylmalonic aciduria 91.7 0.15 5E-06 51.2 4.9 36 141-176 74-109 (349)
178 2p67_A LAO/AO transport system 91.7 0.14 4.8E-06 51.1 4.7 40 137-176 52-91 (341)
179 2ewv_A Twitching motility prot 91.6 0.14 4.7E-06 52.0 4.6 31 138-168 133-163 (372)
180 4e22_A Cytidylate kinase; P-lo 91.5 0.079 2.7E-06 50.5 2.5 26 139-164 25-50 (252)
181 2pez_A Bifunctional 3'-phospho 91.5 0.18 6E-06 44.8 4.7 27 140-166 4-30 (179)
182 2c9o_A RUVB-like 1; hexameric 91.4 0.19 6.4E-06 52.2 5.4 26 140-165 62-87 (456)
183 2r8r_A Sensor protein; KDPD, P 91.4 0.18 6.3E-06 47.9 4.9 154 140-342 4-184 (228)
184 2plr_A DTMP kinase, probable t 91.4 0.13 4.6E-06 46.3 3.9 27 140-166 3-29 (213)
185 3bk7_A ABC transporter ATP-bin 91.3 0.085 2.9E-06 57.2 2.8 33 131-163 107-139 (607)
186 1jr3_A DNA polymerase III subu 91.3 0.34 1.2E-05 47.8 7.0 24 143-166 40-63 (373)
187 3iij_A Coilin-interacting nucl 91.2 0.11 3.9E-06 46.0 3.1 27 139-165 9-35 (180)
188 2j37_W Signal recognition part 91.1 1.1 3.7E-05 47.4 11.0 39 139-177 99-137 (504)
189 4b4t_K 26S protease regulatory 91.1 0.15 5.2E-06 52.9 4.3 22 144-165 209-230 (428)
190 1iy2_A ATP-dependent metallopr 91.0 0.091 3.1E-06 50.4 2.5 27 137-165 71-97 (278)
191 3cf0_A Transitional endoplasmi 91.0 0.67 2.3E-05 45.0 8.8 27 139-165 47-73 (301)
192 3jvv_A Twitching mobility prot 91.0 0.19 6.6E-06 50.7 4.9 31 138-168 120-150 (356)
193 1vt4_I APAF-1 related killer D 91.0 0.56 1.9E-05 54.0 9.1 50 141-191 150-201 (1221)
194 2qp9_X Vacuolar protein sortin 91.0 0.58 2E-05 46.8 8.5 24 142-165 85-108 (355)
195 4b4t_L 26S protease subunit RP 90.9 0.29 9.8E-06 50.9 6.3 23 143-165 217-239 (437)
196 1g5t_A COB(I)alamin adenosyltr 90.9 0.78 2.7E-05 42.5 8.6 109 132-251 20-130 (196)
197 2px0_A Flagellar biosynthesis 90.9 0.2 6.8E-06 49.2 4.8 39 138-176 102-141 (296)
198 4b4t_M 26S protease regulatory 90.8 0.24 8.2E-06 51.5 5.5 23 143-165 217-239 (434)
199 3sfz_A APAF-1, apoptotic pepti 90.8 0.12 4.2E-06 59.1 3.6 41 141-181 147-190 (1249)
200 1zuh_A Shikimate kinase; alpha 90.8 0.12 4.2E-06 45.3 2.8 24 142-165 8-31 (168)
201 1u0l_A Probable GTPase ENGC; p 90.8 0.051 1.8E-06 53.4 0.4 33 131-163 159-191 (301)
202 1a5t_A Delta prime, HOLB; zinc 90.7 0.38 1.3E-05 47.6 6.7 25 143-167 26-50 (334)
203 3kb2_A SPBC2 prophage-derived 90.7 0.12 4E-06 45.1 2.6 23 143-165 3-25 (173)
204 2qgz_A Helicase loader, putati 90.7 0.21 7E-06 49.2 4.7 29 140-168 151-180 (308)
205 3b5x_A Lipid A export ATP-bind 90.6 0.086 2.9E-06 56.6 2.0 31 135-165 363-393 (582)
206 2rcn_A Probable GTPase ENGC; Y 90.6 0.066 2.2E-06 54.3 1.0 32 132-163 206-237 (358)
207 1xjc_A MOBB protein homolog; s 90.6 0.22 7.6E-06 45.0 4.4 34 143-176 6-39 (169)
208 2gj8_A MNME, tRNA modification 90.5 0.11 3.6E-06 46.0 2.2 24 140-163 3-26 (172)
209 2z0h_A DTMP kinase, thymidylat 90.4 0.37 1.3E-05 42.9 5.8 25 143-167 2-26 (197)
210 1nks_A Adenylate kinase; therm 90.3 0.22 7.4E-06 44.1 4.1 24 143-166 3-26 (194)
211 3fb4_A Adenylate kinase; psych 90.3 0.13 4.4E-06 47.0 2.6 23 143-165 2-24 (216)
212 4edh_A DTMP kinase, thymidylat 90.2 2.1 7.1E-05 39.7 11.0 51 140-192 5-55 (213)
213 3dl0_A Adenylate kinase; phosp 90.1 0.14 4.6E-06 47.0 2.6 22 143-164 2-23 (216)
214 1tev_A UMP-CMP kinase; ploop, 89.9 0.16 5.4E-06 45.1 2.9 26 140-165 2-27 (196)
215 2gza_A Type IV secretion syste 89.9 0.068 2.3E-06 54.0 0.5 30 136-165 170-199 (361)
216 2c95_A Adenylate kinase 1; tra 89.9 0.16 5.5E-06 45.3 2.9 27 139-165 7-33 (196)
217 2gno_A DNA polymerase III, gam 89.9 0.59 2E-05 46.0 7.2 53 140-192 17-74 (305)
218 1qhx_A CPT, protein (chloramph 89.8 0.16 5.6E-06 44.7 2.9 24 141-164 3-26 (178)
219 1c9k_A COBU, adenosylcobinamid 89.8 0.22 7.5E-06 45.6 3.8 21 144-164 2-22 (180)
220 2v54_A DTMP kinase, thymidylat 89.8 0.15 5.2E-06 45.9 2.7 25 140-164 3-27 (204)
221 3trf_A Shikimate kinase, SK; a 89.7 0.17 5.9E-06 44.9 3.0 25 141-165 5-29 (185)
222 2yl4_A ATP-binding cassette SU 89.7 0.12 4.2E-06 55.5 2.3 34 131-164 359-393 (595)
223 3vfd_A Spastin; ATPase, microt 89.7 1.7 5.7E-05 43.7 10.7 24 141-164 148-171 (389)
224 2rhm_A Putative kinase; P-loop 89.7 0.18 6E-06 44.9 3.0 27 139-165 3-29 (193)
225 1yqt_A RNAse L inhibitor; ATP- 89.6 0.13 4.5E-06 54.8 2.4 28 137-164 308-335 (538)
226 2pbr_A DTMP kinase, thymidylat 89.6 0.5 1.7E-05 41.8 6.0 24 143-166 2-25 (195)
227 1zd8_A GTP:AMP phosphotransfer 89.5 0.16 5.3E-06 47.2 2.6 27 138-164 4-30 (227)
228 2vli_A Antibiotic resistance p 89.5 0.15 5.3E-06 45.0 2.5 25 140-164 4-28 (183)
229 4b4t_H 26S protease regulatory 89.5 0.31 1.1E-05 51.1 5.1 24 142-165 244-267 (467)
230 3nwj_A ATSK2; P loop, shikimat 89.5 0.1 3.5E-06 50.1 1.3 36 130-165 33-72 (250)
231 2if2_A Dephospho-COA kinase; a 89.5 0.14 4.9E-06 46.3 2.3 21 143-163 3-23 (204)
232 2vp4_A Deoxynucleoside kinase; 89.4 0.1 3.5E-06 48.8 1.3 28 137-164 16-43 (230)
233 3ozx_A RNAse L inhibitor; ATP 89.4 0.12 4E-06 55.2 1.9 29 136-164 289-317 (538)
234 1odf_A YGR205W, hypothetical 3 89.4 0.16 5.6E-06 49.7 2.7 29 138-166 28-56 (290)
235 1aky_A Adenylate kinase; ATP:A 89.4 0.19 6.5E-06 46.3 3.0 26 140-165 3-28 (220)
236 1svm_A Large T antigen; AAA+ f 89.4 0.16 5.5E-06 51.7 2.8 29 136-164 164-192 (377)
237 1m7g_A Adenylylsulfate kinase; 89.4 0.35 1.2E-05 44.2 4.8 29 138-166 22-50 (211)
238 3b60_A Lipid A export ATP-bind 89.4 0.12 4.1E-06 55.4 1.9 31 134-164 362-392 (582)
239 2xxa_A Signal recognition part 89.4 1.8 6.2E-05 44.7 10.8 46 140-185 99-145 (433)
240 1iqp_A RFCS; clamp loader, ext 89.3 0.61 2.1E-05 44.8 6.8 28 139-166 44-71 (327)
241 1xwi_A SKD1 protein; VPS4B, AA 89.3 0.62 2.1E-05 45.9 6.9 25 141-165 45-69 (322)
242 4b4t_I 26S protease regulatory 89.3 0.43 1.5E-05 49.6 5.8 22 144-165 219-240 (437)
243 1p9r_A General secretion pathw 89.2 0.22 7.4E-06 51.5 3.6 35 131-166 158-192 (418)
244 3eie_A Vacuolar protein sortin 89.2 0.36 1.2E-05 47.4 5.1 24 142-165 52-75 (322)
245 3qf4_B Uncharacterized ABC tra 89.1 0.14 4.8E-06 55.1 2.2 29 136-164 376-404 (598)
246 3pfi_A Holliday junction ATP-d 89.1 0.42 1.4E-05 46.8 5.5 23 142-164 56-78 (338)
247 2iyv_A Shikimate kinase, SK; t 89.1 0.17 5.7E-06 45.0 2.4 24 142-165 3-26 (184)
248 1jjv_A Dephospho-COA kinase; P 89.1 0.16 5.5E-06 46.1 2.3 21 143-163 4-24 (206)
249 2bwj_A Adenylate kinase 5; pho 89.0 0.18 6E-06 45.2 2.5 27 139-165 10-36 (199)
250 2qag_B Septin-6, protein NEDD5 89.0 0.17 5.9E-06 52.5 2.7 28 136-163 35-64 (427)
251 2cdn_A Adenylate kinase; phosp 89.0 0.21 7.3E-06 45.1 3.1 27 139-165 18-44 (201)
252 4eaq_A DTMP kinase, thymidylat 89.0 0.31 1.1E-05 45.8 4.2 29 138-166 23-51 (229)
253 3bk7_A ABC transporter ATP-bin 89.0 0.15 5.3E-06 55.1 2.4 27 137-163 378-404 (607)
254 2jaq_A Deoxyguanosine kinase; 88.9 0.2 6.9E-06 44.8 2.8 23 143-165 2-24 (205)
255 3h4m_A Proteasome-activating n 88.9 0.21 7.2E-06 47.6 3.0 27 139-165 49-75 (285)
256 1ukz_A Uridylate kinase; trans 88.8 0.23 7.9E-06 44.8 3.1 25 140-164 14-38 (203)
257 3tlx_A Adenylate kinase 2; str 88.8 0.2 6.9E-06 47.3 2.8 27 139-165 27-53 (243)
258 1np6_A Molybdopterin-guanine d 88.7 0.37 1.3E-05 43.5 4.5 34 142-175 7-40 (174)
259 3be4_A Adenylate kinase; malar 88.7 0.21 7.3E-06 46.0 2.9 26 140-165 4-29 (217)
260 1ly1_A Polynucleotide kinase; 88.6 0.18 6.3E-06 44.2 2.3 21 143-163 4-24 (181)
261 2p5t_B PEZT; postsegregational 88.6 0.17 5.9E-06 48.0 2.2 29 136-164 27-55 (253)
262 3t61_A Gluconokinase; PSI-biol 88.6 0.21 7.2E-06 45.2 2.7 24 142-165 19-42 (202)
263 2f9l_A RAB11B, member RAS onco 88.4 0.2 6.9E-06 45.0 2.5 22 143-164 7-28 (199)
264 2pt7_A CAG-ALFA; ATPase, prote 88.4 0.075 2.6E-06 53.1 -0.5 30 136-165 166-195 (330)
265 3lw7_A Adenylate kinase relate 88.3 0.17 6E-06 43.7 1.9 19 143-161 3-21 (179)
266 1oix_A RAS-related protein RAB 88.3 0.2 6.7E-06 45.0 2.3 22 143-164 31-52 (191)
267 1lv7_A FTSH; alpha/beta domain 88.3 0.22 7.6E-06 46.9 2.7 22 144-165 48-69 (257)
268 1via_A Shikimate kinase; struc 88.2 0.22 7.6E-06 44.0 2.6 23 143-165 6-28 (175)
269 2iw3_A Elongation factor 3A; a 88.2 0.19 6.4E-06 57.4 2.5 34 130-163 449-483 (986)
270 3kta_A Chromosome segregation 88.2 0.21 7.1E-06 44.3 2.3 28 135-163 21-48 (182)
271 3p32_A Probable GTPase RV1496/ 88.1 0.46 1.6E-05 47.5 5.1 38 139-176 77-114 (355)
272 4a82_A Cystic fibrosis transme 88.0 0.11 3.9E-06 55.6 0.6 34 131-164 356-390 (578)
273 3t15_A Ribulose bisphosphate c 88.0 0.21 7.1E-06 48.6 2.4 23 143-165 38-60 (293)
274 2wji_A Ferrous iron transport 88.0 0.22 7.4E-06 43.4 2.3 22 142-163 4-25 (165)
275 1xx6_A Thymidine kinase; NESG, 87.8 0.49 1.7E-05 43.4 4.7 44 138-181 5-49 (191)
276 1a7j_A Phosphoribulokinase; tr 87.8 0.42 1.4E-05 46.6 4.5 26 140-165 4-29 (290)
277 3syl_A Protein CBBX; photosynt 87.8 0.29 9.9E-06 47.1 3.3 28 140-167 66-93 (309)
278 3cr8_A Sulfate adenylyltranfer 87.8 0.25 8.6E-06 52.9 3.0 31 137-167 365-395 (552)
279 1q3t_A Cytidylate kinase; nucl 87.7 0.26 8.8E-06 46.1 2.8 26 139-164 14-39 (236)
280 3ozx_A RNAse L inhibitor; ATP 87.7 0.21 7E-06 53.3 2.3 28 136-163 20-47 (538)
281 3sr0_A Adenylate kinase; phosp 87.6 0.25 8.7E-06 45.8 2.6 22 143-164 2-23 (206)
282 3a4m_A L-seryl-tRNA(SEC) kinas 87.6 0.48 1.7E-05 45.1 4.7 28 139-166 2-29 (260)
283 3r20_A Cytidylate kinase; stru 87.5 0.27 9.1E-06 46.8 2.8 25 141-165 9-33 (233)
284 1sxj_B Activator 1 37 kDa subu 87.5 0.64 2.2E-05 44.6 5.6 27 140-166 41-67 (323)
285 1in4_A RUVB, holliday junction 87.4 0.25 8.7E-06 48.9 2.7 24 142-165 52-75 (334)
286 3b9p_A CG5977-PA, isoform A; A 87.3 0.28 9.6E-06 47.1 2.9 26 140-165 53-78 (297)
287 1zak_A Adenylate kinase; ATP:A 87.3 0.28 9.6E-06 45.2 2.7 26 140-165 4-29 (222)
288 3qf4_A ABC transporter, ATP-bi 87.2 0.16 5.4E-06 54.7 1.1 34 131-164 358-392 (587)
289 2zej_A Dardarin, leucine-rich 87.2 0.21 7.2E-06 44.3 1.7 21 143-163 4-24 (184)
290 4f4c_A Multidrug resistance pr 87.2 0.2 6.7E-06 59.1 1.9 34 131-164 1094-1128(1321)
291 4tmk_A Protein (thymidylate ki 87.2 4.5 0.00015 37.5 11.0 50 140-192 2-53 (213)
292 3upu_A ATP-dependent DNA helic 87.1 0.45 1.5E-05 49.3 4.4 36 143-178 47-83 (459)
293 2r62_A Cell division protease 87.1 0.28 9.4E-06 46.4 2.6 22 144-165 47-68 (268)
294 3sop_A Neuronal-specific septi 87.1 0.22 7.7E-06 48.1 2.0 23 143-165 4-26 (270)
295 1ni3_A YCHF GTPase, YCHF GTP-b 87.1 0.29 9.9E-06 50.2 2.9 29 135-163 14-42 (392)
296 4fcw_A Chaperone protein CLPB; 87.1 0.35 1.2E-05 46.5 3.4 26 142-167 48-73 (311)
297 1gvn_B Zeta; postsegregational 87.0 0.33 1.1E-05 47.2 3.2 29 136-164 28-56 (287)
298 1r8s_A ADP-ribosylation factor 87.0 0.31 1E-05 41.7 2.6 22 143-164 2-23 (164)
299 1uf9_A TT1252 protein; P-loop, 86.9 0.29 9.8E-06 43.9 2.5 24 140-163 7-30 (203)
300 1ak2_A Adenylate kinase isoenz 86.9 0.33 1.1E-05 45.2 3.0 26 140-165 15-40 (233)
301 3n70_A Transport activator; si 86.9 0.29 1E-05 42.1 2.4 25 140-164 23-47 (145)
302 2qz4_A Paraplegin; AAA+, SPG7, 86.8 0.35 1.2E-05 45.1 3.2 25 141-165 39-63 (262)
303 2pt5_A Shikimate kinase, SK; a 86.8 0.29 9.9E-06 42.6 2.4 23 143-165 2-24 (168)
304 4ag6_A VIRB4 ATPase, type IV s 86.8 0.49 1.7E-05 47.7 4.4 49 140-192 34-82 (392)
305 3cf2_A TER ATPase, transitiona 86.8 0.61 2.1E-05 52.1 5.5 23 142-164 512-534 (806)
306 1e6c_A Shikimate kinase; phosp 86.7 0.31 1.1E-05 42.5 2.6 24 142-165 3-26 (173)
307 3ld9_A DTMP kinase, thymidylat 86.7 2.5 8.4E-05 39.7 9.0 52 139-192 19-72 (223)
308 1z2a_A RAS-related protein RAB 86.6 0.31 1.1E-05 41.6 2.5 22 143-164 7-28 (168)
309 2dyk_A GTP-binding protein; GT 86.6 0.31 1.1E-05 41.4 2.4 21 143-163 3-23 (161)
310 1kao_A RAP2A; GTP-binding prot 86.5 0.32 1.1E-05 41.3 2.4 23 142-164 4-26 (167)
311 4b3f_X DNA-binding protein smu 86.5 0.49 1.7E-05 51.2 4.5 49 142-193 206-254 (646)
312 1e4v_A Adenylate kinase; trans 86.5 0.32 1.1E-05 44.5 2.6 23 143-165 2-24 (214)
313 2nzj_A GTP-binding protein REM 86.4 0.3 1E-05 42.1 2.3 21 143-163 6-26 (175)
314 2wjg_A FEOB, ferrous iron tran 86.4 0.3 1E-05 43.0 2.3 22 142-163 8-29 (188)
315 3ux8_A Excinuclease ABC, A sub 86.2 0.18 6E-06 55.1 0.8 27 136-162 343-369 (670)
316 2oap_1 GSPE-2, type II secreti 86.1 0.17 6E-06 53.5 0.6 29 137-165 256-284 (511)
317 3tqc_A Pantothenate kinase; bi 86.0 0.5 1.7E-05 47.0 3.9 23 143-165 94-116 (321)
318 1gtv_A TMK, thymidylate kinase 86.0 0.16 5.5E-06 46.1 0.3 25 143-167 2-26 (214)
319 1hqc_A RUVB; extended AAA-ATPa 85.9 1.4 4.9E-05 42.4 7.1 25 141-165 38-62 (324)
320 1tq4_A IIGP1, interferon-induc 85.9 0.22 7.5E-06 51.4 1.3 21 143-163 71-91 (413)
321 2ce2_X GTPase HRAS; signaling 85.9 0.33 1.1E-05 41.0 2.3 22 143-164 5-26 (166)
322 1u8z_A RAS-related protein RAL 85.9 0.36 1.2E-05 41.0 2.5 22 143-164 6-27 (168)
323 2qmh_A HPR kinase/phosphorylas 85.8 0.31 1.1E-05 45.5 2.2 25 140-164 33-57 (205)
324 1qf9_A UMP/CMP kinase, protein 85.8 0.38 1.3E-05 42.5 2.7 24 141-164 6-29 (194)
325 3ux8_A Excinuclease ABC, A sub 85.8 0.24 8.3E-06 53.9 1.7 23 136-158 39-61 (670)
326 3m6a_A ATP-dependent protease 85.8 0.38 1.3E-05 51.2 3.1 27 139-165 106-132 (543)
327 1ofh_A ATP-dependent HSL prote 85.7 0.38 1.3E-05 45.9 2.9 26 140-165 49-74 (310)
328 1m2o_B GTP-binding protein SAR 85.7 0.34 1.2E-05 43.3 2.3 25 139-163 21-45 (190)
329 1tue_A Replication protein E1; 85.6 0.35 1.2E-05 45.4 2.4 28 138-165 55-82 (212)
330 3q85_A GTP-binding protein REM 85.6 0.35 1.2E-05 41.5 2.3 21 143-163 4-24 (169)
331 2f1r_A Molybdopterin-guanine d 85.6 0.18 6E-06 45.5 0.3 26 142-167 3-28 (171)
332 1ek0_A Protein (GTP-binding pr 85.5 0.31 1.1E-05 41.6 1.9 22 143-164 5-26 (170)
333 3gmt_A Adenylate kinase; ssgci 85.5 0.37 1.3E-05 45.7 2.6 25 141-165 8-32 (230)
334 1vht_A Dephospho-COA kinase; s 85.5 0.39 1.3E-05 43.9 2.7 24 140-163 3-26 (218)
335 1c1y_A RAS-related protein RAP 85.4 0.39 1.3E-05 41.0 2.5 22 143-164 5-26 (167)
336 1z08_A RAS-related protein RAB 85.4 0.38 1.3E-05 41.2 2.4 22 143-164 8-29 (170)
337 2grj_A Dephospho-COA kinase; T 85.3 0.4 1.4E-05 43.9 2.6 24 141-164 12-35 (192)
338 1uj2_A Uridine-cytidine kinase 85.1 0.38 1.3E-05 45.4 2.5 23 142-164 23-45 (252)
339 2ze6_A Isopentenyl transferase 85.1 0.38 1.3E-05 45.8 2.4 23 143-165 3-25 (253)
340 1g16_A RAS-related protein SEC 85.1 0.38 1.3E-05 41.1 2.3 21 143-163 5-25 (170)
341 1r2q_A RAS-related protein RAB 84.9 0.42 1.4E-05 40.8 2.5 22 143-164 8-29 (170)
342 3e1s_A Exodeoxyribonuclease V, 84.9 0.58 2E-05 50.2 4.1 38 140-177 203-240 (574)
343 1ex7_A Guanylate kinase; subst 84.9 0.4 1.4E-05 43.9 2.4 21 144-164 4-24 (186)
344 2erx_A GTP-binding protein DI- 84.9 0.39 1.3E-05 41.0 2.3 22 142-163 4-25 (172)
345 1qvr_A CLPB protein; coiled co 84.9 1.5 5E-05 49.2 7.4 29 139-167 189-217 (854)
346 1ky3_A GTP-binding protein YPT 84.8 0.42 1.4E-05 41.4 2.4 23 142-164 9-31 (182)
347 1wms_A RAB-9, RAB9, RAS-relate 84.8 0.42 1.4E-05 41.3 2.4 22 143-164 9-30 (177)
348 2v3c_C SRP54, signal recogniti 84.8 0.62 2.1E-05 48.2 4.1 37 140-176 98-134 (432)
349 3q72_A GTP-binding protein RAD 84.8 0.36 1.2E-05 41.3 1.9 20 143-162 4-23 (166)
350 3euj_A Chromosome partition pr 84.6 0.41 1.4E-05 50.4 2.6 29 136-165 25-53 (483)
351 3ake_A Cytidylate kinase; CMP 84.6 0.48 1.6E-05 42.6 2.8 23 143-165 4-26 (208)
352 1z0j_A RAB-22, RAS-related pro 84.6 0.44 1.5E-05 40.7 2.4 22 143-164 8-29 (170)
353 2ged_A SR-beta, signal recogni 84.6 0.43 1.5E-05 42.1 2.4 24 141-164 48-71 (193)
354 3bc1_A RAS-related protein RAB 84.4 0.45 1.5E-05 41.6 2.5 22 143-164 13-34 (195)
355 2iw3_A Elongation factor 3A; a 84.3 0.23 7.9E-06 56.6 0.6 30 134-163 692-721 (986)
356 2fn4_A P23, RAS-related protei 84.3 0.43 1.5E-05 41.3 2.3 23 142-164 10-32 (181)
357 3u61_B DNA polymerase accessor 84.3 1.7 5.7E-05 42.1 6.8 69 143-219 49-118 (324)
358 1upt_A ARL1, ADP-ribosylation 84.2 0.47 1.6E-05 40.7 2.5 25 140-164 6-30 (171)
359 2hf9_A Probable hydrogenase ni 84.2 0.7 2.4E-05 42.1 3.8 26 141-166 38-63 (226)
360 3ihw_A Centg3; RAS, centaurin, 84.2 0.45 1.6E-05 42.3 2.4 23 142-164 21-43 (184)
361 1mh1_A RAC1; GTP-binding, GTPa 84.1 0.39 1.3E-05 41.8 1.9 23 142-164 6-28 (186)
362 3j16_B RLI1P; ribosome recycli 84.1 0.42 1.4E-05 51.7 2.5 24 140-163 377-400 (608)
363 4dsu_A GTPase KRAS, isoform 2B 84.0 0.48 1.6E-05 41.4 2.4 22 143-164 6-27 (189)
364 2xb4_A Adenylate kinase; ATP-b 83.9 0.52 1.8E-05 43.7 2.8 23 143-165 2-24 (223)
365 1z0f_A RAB14, member RAS oncog 83.8 0.5 1.7E-05 40.7 2.5 23 142-164 16-38 (179)
366 2cxx_A Probable GTP-binding pr 83.8 0.43 1.5E-05 41.8 2.0 21 143-163 3-23 (190)
367 3dz8_A RAS-related protein RAB 83.8 0.49 1.7E-05 41.9 2.4 22 143-164 25-46 (191)
368 3clv_A RAB5 protein, putative; 83.7 0.5 1.7E-05 41.5 2.4 23 142-164 8-30 (208)
369 2hxs_A RAB-26, RAS-related pro 83.7 0.48 1.6E-05 41.0 2.3 22 143-164 8-29 (178)
370 2y8e_A RAB-protein 6, GH09086P 83.5 0.46 1.6E-05 41.0 2.1 22 142-163 15-36 (179)
371 3umf_A Adenylate kinase; rossm 83.5 0.61 2.1E-05 43.7 3.1 26 139-164 27-52 (217)
372 3con_A GTPase NRAS; structural 83.4 0.52 1.8E-05 41.5 2.5 22 143-164 23-44 (190)
373 1sxj_C Activator 1 40 kDa subu 83.4 0.49 1.7E-05 46.6 2.5 24 144-167 49-72 (340)
374 2oil_A CATX-8, RAS-related pro 83.3 0.53 1.8E-05 41.7 2.5 22 143-164 27-48 (193)
375 2iwr_A Centaurin gamma 1; ANK 83.3 0.33 1.1E-05 42.2 1.1 23 142-164 8-30 (178)
376 2zan_A Vacuolar protein sortin 83.3 1.4 4.6E-05 45.6 5.9 25 141-165 167-191 (444)
377 1m7b_A RND3/RHOE small GTP-bin 83.3 0.5 1.7E-05 41.6 2.3 22 143-164 9-30 (184)
378 2efe_B Small GTP-binding prote 83.2 0.53 1.8E-05 40.8 2.4 22 143-164 14-35 (181)
379 2a9k_A RAS-related protein RAL 83.2 0.54 1.9E-05 40.8 2.5 23 142-164 19-41 (187)
380 3kkq_A RAS-related protein M-R 83.1 0.51 1.8E-05 41.2 2.3 23 142-164 19-41 (183)
381 3tqf_A HPR(Ser) kinase; transf 83.0 0.54 1.8E-05 43.0 2.4 24 140-163 15-38 (181)
382 3c5c_A RAS-like protein 12; GD 83.0 0.46 1.6E-05 42.2 1.9 22 143-164 23-44 (187)
383 1sxj_E Activator 1 40 kDa subu 83.0 0.46 1.6E-05 46.6 2.1 29 137-165 32-60 (354)
384 3bwd_D RAC-like GTP-binding pr 83.0 0.56 1.9E-05 40.7 2.5 23 141-163 8-30 (182)
385 2bme_A RAB4A, RAS-related prot 83.0 0.53 1.8E-05 41.1 2.3 23 142-164 11-33 (186)
386 3g5u_A MCG1178, multidrug resi 82.9 0.4 1.4E-05 56.3 1.9 29 135-163 1053-1081(1284)
387 3tw8_B RAS-related protein RAB 82.9 0.5 1.7E-05 40.8 2.1 21 143-163 11-31 (181)
388 2wsm_A Hydrogenase expression/ 82.9 0.83 2.8E-05 41.4 3.7 26 140-165 29-54 (221)
389 2cjw_A GTP-binding protein GEM 82.9 0.53 1.8E-05 42.2 2.3 21 143-163 8-28 (192)
390 2g6b_A RAS-related protein RAB 82.8 0.57 2E-05 40.6 2.5 22 143-164 12-33 (180)
391 3pqc_A Probable GTP-binding pr 82.7 0.5 1.7E-05 41.5 2.0 22 143-164 25-46 (195)
392 2dhr_A FTSH; AAA+ protein, hex 82.7 0.52 1.8E-05 49.8 2.5 25 138-164 63-87 (499)
393 2bjv_A PSP operon transcriptio 82.6 0.57 1.9E-05 44.2 2.5 25 141-165 29-53 (265)
394 2lkc_A Translation initiation 82.6 0.61 2.1E-05 40.3 2.5 25 139-163 6-30 (178)
395 1yrb_A ATP(GTP)binding protein 82.5 0.94 3.2E-05 42.3 4.0 34 142-176 15-48 (262)
396 1ega_A Protein (GTP-binding pr 82.5 0.48 1.6E-05 46.3 2.0 25 140-164 7-31 (301)
397 1nrj_B SR-beta, signal recogni 82.5 0.58 2E-05 42.3 2.5 23 142-164 13-35 (218)
398 1svi_A GTP-binding protein YSX 82.5 0.51 1.8E-05 41.6 2.0 24 141-164 23-46 (195)
399 3tkl_A RAS-related protein RAB 82.4 0.6 2.1E-05 41.1 2.5 22 143-164 18-39 (196)
400 2bov_A RAla, RAS-related prote 82.2 0.61 2.1E-05 41.4 2.5 23 142-164 15-37 (206)
401 2gf9_A RAS-related protein RAB 82.2 0.62 2.1E-05 41.1 2.5 22 143-164 24-45 (189)
402 3t5g_A GTP-binding protein RHE 82.2 0.55 1.9E-05 40.9 2.1 23 142-164 7-29 (181)
403 2j9r_A Thymidine kinase; TK1, 82.1 1.3 4.4E-05 41.6 4.7 47 138-184 25-72 (214)
404 1e9r_A Conjugal transfer prote 82.1 0.88 3E-05 46.4 3.9 36 140-175 52-87 (437)
405 2qen_A Walker-type ATPase; unk 82.0 0.66 2.2E-05 44.9 2.8 24 141-164 31-54 (350)
406 1z06_A RAS-related protein RAB 82.0 0.63 2.2E-05 41.1 2.4 22 143-164 22-43 (189)
407 1sxj_D Activator 1 41 kDa subu 81.9 0.7 2.4E-05 45.1 2.9 25 142-166 59-83 (353)
408 1vg8_A RAS-related protein RAB 81.9 0.63 2.2E-05 41.5 2.4 22 143-164 10-31 (207)
409 1zd9_A ADP-ribosylation factor 81.8 0.65 2.2E-05 41.1 2.5 22 143-164 24-45 (188)
410 2fu5_C RAS-related protein RAB 81.8 0.46 1.6E-05 41.5 1.4 22 143-164 10-31 (183)
411 3reg_A RHO-like small GTPase; 81.7 0.66 2.3E-05 41.1 2.5 23 142-164 24-46 (194)
412 3hws_A ATP-dependent CLP prote 81.6 0.66 2.3E-05 46.1 2.7 25 141-165 51-75 (363)
413 3g5u_A MCG1178, multidrug resi 81.6 0.4 1.4E-05 56.3 1.2 34 131-164 405-439 (1284)
414 1fzq_A ADP-ribosylation factor 81.5 0.57 1.9E-05 41.3 1.9 23 141-163 16-38 (181)
415 2a5j_A RAS-related protein RAB 81.5 0.68 2.3E-05 41.0 2.5 21 143-163 23-43 (191)
416 2atv_A RERG, RAS-like estrogen 81.4 0.68 2.3E-05 41.2 2.4 38 126-164 14-51 (196)
417 3hjn_A DTMP kinase, thymidylat 81.4 11 0.00039 34.0 10.8 47 144-192 3-49 (197)
418 2fg5_A RAB-22B, RAS-related pr 81.3 0.64 2.2E-05 41.3 2.3 22 143-164 25-46 (192)
419 2fh5_B SR-beta, signal recogni 81.3 0.69 2.4E-05 41.7 2.5 23 142-164 8-30 (214)
420 3lxx_A GTPase IMAP family memb 81.3 0.63 2.2E-05 43.2 2.3 21 143-163 31-51 (239)
421 1zbd_A Rabphilin-3A; G protein 81.2 0.66 2.3E-05 41.4 2.3 22 143-164 10-31 (203)
422 1x3s_A RAS-related protein RAB 81.0 0.72 2.5E-05 40.5 2.5 22 143-164 17-38 (195)
423 2h17_A ADP-ribosylation factor 81.0 0.58 2E-05 41.1 1.8 23 142-164 22-44 (181)
424 2r44_A Uncharacterized protein 81.0 0.45 1.5E-05 46.5 1.1 26 140-165 45-70 (331)
425 3lv8_A DTMP kinase, thymidylat 80.9 2.1 7.1E-05 40.6 5.7 52 140-192 26-77 (236)
426 2p5s_A RAS and EF-hand domain 80.9 0.73 2.5E-05 41.2 2.5 22 142-163 29-50 (199)
427 3oes_A GTPase rhebl1; small GT 80.9 0.69 2.4E-05 41.4 2.3 25 140-164 23-47 (201)
428 3end_A Light-independent proto 80.8 1.4 4.8E-05 42.5 4.7 38 138-175 38-75 (307)
429 3k1j_A LON protease, ATP-depen 80.6 0.61 2.1E-05 50.2 2.1 28 138-165 57-84 (604)
430 2ew1_A RAS-related protein RAB 80.6 0.7 2.4E-05 41.9 2.3 22 143-164 28-49 (201)
431 1zj6_A ADP-ribosylation factor 80.5 0.68 2.3E-05 40.7 2.1 24 140-163 15-38 (187)
432 1f6b_A SAR1; gtpases, N-termin 80.5 0.58 2E-05 42.1 1.6 23 141-163 25-47 (198)
433 2ce7_A Cell division protein F 80.5 0.77 2.6E-05 48.2 2.8 26 138-165 48-73 (476)
434 2gf0_A GTP-binding protein DI- 80.5 0.72 2.5E-05 40.7 2.3 24 141-164 8-31 (199)
435 4gzl_A RAS-related C3 botulinu 80.4 0.61 2.1E-05 42.1 1.7 26 139-164 28-53 (204)
436 1moz_A ARL1, ADP-ribosylation 80.3 0.5 1.7E-05 41.2 1.1 24 139-162 16-39 (183)
437 1ksh_A ARF-like protein 2; sma 80.3 0.7 2.4E-05 40.5 2.1 26 139-164 16-41 (186)
438 2ga8_A Hypothetical 39.9 kDa p 80.2 0.87 3E-05 46.1 3.0 29 138-166 19-49 (359)
439 1ypw_A Transitional endoplasmi 80.2 0.78 2.7E-05 51.2 2.9 27 138-164 235-261 (806)
440 4bas_A ADP-ribosylation factor 80.2 0.7 2.4E-05 40.8 2.1 24 141-164 17-40 (199)
441 2qnr_A Septin-2, protein NEDD5 80.1 0.62 2.1E-05 45.6 1.8 21 143-163 20-40 (301)
442 3cbq_A GTP-binding protein REM 80.0 0.6 2.1E-05 41.9 1.6 20 143-162 25-44 (195)
443 4dkx_A RAS-related protein RAB 80.0 0.67 2.3E-05 43.1 1.9 22 143-164 15-36 (216)
444 1gwn_A RHO-related GTP-binding 80.0 0.76 2.6E-05 41.7 2.3 23 142-164 29-51 (205)
445 1g8p_A Magnesium-chelatase 38 80.0 0.66 2.2E-05 45.3 2.0 25 141-165 45-69 (350)
446 2o52_A RAS-related protein RAB 80.0 0.72 2.5E-05 41.4 2.1 22 143-164 27-48 (200)
447 3t1o_A Gliding protein MGLA; G 80.0 0.82 2.8E-05 40.0 2.5 20 142-161 15-34 (198)
448 2bcg_Y Protein YP2, GTP-bindin 80.0 0.77 2.6E-05 41.1 2.3 22 143-164 10-31 (206)
449 3d8b_A Fidgetin-like protein 1 79.8 0.91 3.1E-05 45.3 3.0 25 140-164 116-140 (357)
450 4f4c_A Multidrug resistance pr 79.7 0.56 1.9E-05 55.3 1.5 30 135-164 438-467 (1321)
451 2atx_A Small GTP binding prote 79.6 0.8 2.7E-05 40.5 2.3 22 143-164 20-41 (194)
452 2fv8_A H6, RHO-related GTP-bin 79.5 0.8 2.7E-05 41.2 2.3 22 142-163 26-47 (207)
453 1um8_A ATP-dependent CLP prote 79.4 0.87 3E-05 45.5 2.7 25 141-165 72-96 (376)
454 2q3h_A RAS homolog gene family 79.4 0.82 2.8E-05 40.6 2.3 24 141-164 20-43 (201)
455 2f6r_A COA synthase, bifunctio 79.4 0.8 2.7E-05 44.2 2.3 22 142-163 76-97 (281)
456 2f7s_A C25KG, RAS-related prot 79.4 0.81 2.8E-05 41.3 2.3 21 143-163 27-47 (217)
457 3cph_A RAS-related protein SEC 79.4 0.87 3E-05 40.7 2.5 23 141-163 20-42 (213)
458 3k53_A Ferrous iron transport 79.4 0.74 2.5E-05 43.9 2.1 21 143-163 5-25 (271)
459 2ocp_A DGK, deoxyguanosine kin 79.4 0.9 3.1E-05 42.3 2.6 26 140-165 1-26 (241)
460 2fna_A Conserved hypothetical 79.3 0.83 2.8E-05 44.2 2.4 24 142-165 31-54 (357)
461 2g3y_A GTP-binding protein GEM 79.2 0.82 2.8E-05 42.2 2.3 21 142-162 38-58 (211)
462 3q3j_B RHO-related GTP-binding 79.1 0.74 2.5E-05 42.0 1.9 23 142-164 28-50 (214)
463 2ohf_A Protein OLA1, GTP-bindi 79.1 0.89 3.1E-05 46.6 2.7 28 137-164 18-45 (396)
464 2il1_A RAB12; G-protein, GDP, 79.0 0.81 2.8E-05 40.7 2.1 22 143-164 28-49 (192)
465 2h92_A Cytidylate kinase; ross 78.9 0.9 3.1E-05 41.4 2.4 24 141-164 3-26 (219)
466 2gco_A H9, RHO-related GTP-bin 78.9 0.86 3E-05 40.8 2.3 22 143-164 27-48 (201)
467 2chq_A Replication factor C sm 78.8 1 3.6E-05 42.9 3.0 28 139-166 36-63 (319)
468 3thx_A DNA mismatch repair pro 78.6 1 3.5E-05 51.2 3.2 33 132-164 653-685 (934)
469 2b6h_A ADP-ribosylation factor 78.6 0.8 2.7E-05 40.8 1.9 24 140-163 28-51 (192)
470 3cf2_A TER ATPase, transitiona 78.5 1.2 4E-05 49.9 3.6 22 143-164 240-261 (806)
471 2ius_A DNA translocase FTSK; n 78.3 1.9 6.3E-05 45.7 4.9 46 136-182 162-209 (512)
472 2yc2_C IFT27, small RAB-relate 78.3 0.54 1.9E-05 41.8 0.7 24 141-164 20-43 (208)
473 2hup_A RAS-related protein RAB 78.2 0.93 3.2E-05 40.7 2.3 21 143-163 31-51 (201)
474 2h57_A ADP-ribosylation factor 78.0 0.71 2.4E-05 40.8 1.4 23 142-164 22-44 (190)
475 2gk6_A Regulator of nonsense t 78.0 1.7 5.8E-05 46.9 4.6 52 141-195 195-247 (624)
476 2j1l_A RHO-related GTP-binding 78.0 0.89 3E-05 41.3 2.1 23 142-164 35-57 (214)
477 2j0v_A RAC-like GTP-binding pr 77.9 0.96 3.3E-05 40.6 2.3 23 142-164 10-32 (212)
478 3co5_A Putative two-component 77.8 0.54 1.8E-05 40.4 0.5 24 140-163 26-49 (143)
479 3pxg_A Negative regulator of g 77.5 1.3 4.3E-05 46.1 3.3 29 139-167 199-227 (468)
480 4hlc_A DTMP kinase, thymidylat 77.2 7.5 0.00026 35.6 8.2 47 142-192 3-50 (205)
481 1wb9_A DNA mismatch repair pro 77.2 1.1 3.6E-05 50.2 2.8 32 133-165 600-631 (800)
482 2qu8_A Putative nucleolar GTP- 77.1 0.87 3E-05 41.8 1.8 23 141-163 29-51 (228)
483 1udx_A The GTP-binding protein 77.1 0.75 2.6E-05 47.4 1.4 34 131-164 147-180 (416)
484 4aby_A DNA repair protein RECN 77.0 0.44 1.5E-05 48.2 -0.4 35 128-163 47-82 (415)
485 2xtp_A GTPase IMAP family memb 76.9 0.97 3.3E-05 42.4 2.1 23 141-163 22-44 (260)
486 1ypw_A Transitional endoplasmi 76.8 1.1 3.6E-05 50.2 2.6 28 138-165 508-535 (806)
487 3szr_A Interferon-induced GTP- 76.5 0.54 1.8E-05 50.8 0.1 32 132-163 31-67 (608)
488 3cpj_B GTP-binding protein YPT 76.3 1.2 4.1E-05 40.6 2.4 22 143-164 15-36 (223)
489 1w4r_A Thymidine kinase; type 76.3 2.4 8.2E-05 39.2 4.5 44 140-183 19-63 (195)
490 3d3q_A TRNA delta(2)-isopenten 76.3 1.1 3.9E-05 44.9 2.5 23 143-165 9-31 (340)
491 1ltq_A Polynucleotide kinase; 76.1 1.1 3.8E-05 43.0 2.3 21 143-163 4-24 (301)
492 2qtf_A Protein HFLX, GTP-bindi 76.1 11 0.00039 37.6 9.9 24 141-164 178-202 (364)
493 3th5_A RAS-related C3 botulinu 77.8 0.55 1.9E-05 42.1 0.0 26 139-164 28-53 (204)
494 3thx_B DNA mismatch repair pro 75.6 0.88 3E-05 51.6 1.5 33 132-164 664-696 (918)
495 3llu_A RAS-related GTP-binding 75.5 1.2 4E-05 39.7 2.1 22 141-162 20-41 (196)
496 2aka_B Dynamin-1; fusion prote 75.5 0.83 2.9E-05 43.6 1.2 22 142-163 27-48 (299)
497 3kjh_A CO dehydrogenase/acetyl 75.4 1.3 4.5E-05 40.6 2.5 33 143-175 2-34 (254)
498 1sxj_A Activator 1 95 kDa subu 75.4 1.4 5E-05 46.2 3.1 25 141-165 77-101 (516)
499 2x77_A ADP-ribosylation factor 75.4 0.84 2.9E-05 40.1 1.1 23 140-162 21-43 (189)
500 1ko7_A HPR kinase/phosphatase; 75.2 1.2 4.2E-05 44.1 2.4 24 140-163 143-166 (314)
No 1
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=100.00 E-value=1.7e-126 Score=1002.73 Aligned_cols=463 Identities=64% Similarity=1.026 Sum_probs=440.0
Q ss_pred CceEEEEEcceEEEEecCCCcceeeeeeeeeC-----c--eEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCcee
Q psy2897 3 DGKIIQCIGSVVDVEFPHNMVPKIYNALKIEN-----S--ELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIM 75 (467)
Q Consensus 3 ~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~~-----~--~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~ 75 (467)
.|+|++|+|++|++.|+...++.+|+.|+|.. . .+.+||+++++++.+++++|++++||++|+.|.+|+++++
T Consensus 20 ~G~v~~V~G~vv~v~~~~~~~~~i~~~~~i~~~~~~g~~~~~~~eV~~~~~~~~v~~~~~~~t~Gl~~G~~V~~tg~~~~ 99 (498)
T 1fx0_B 20 LGRIAQIIGPVLNVAFPPGKMPNIYNALIVKGRDTAGQPMNVTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLS 99 (498)
T ss_dssp CEEEEEEETTEEEEECCSSCCCCTTCEEEECCCSSSSCCCCCEEEEEECCSSSCEEEEESSCCTTCCTTCEEEECSSSCE
T ss_pred CceEEEEEccEEEEEeCCCCccccccEEEEEeCCCCCcccceEEEEEEEecCCeEEEEEecCccCCCCCCEEEecCCcce
Confidence 59999999999999998767889999999862 2 4799999988999999999999999999999999999999
Q ss_pred ecCCCCCcceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCch
Q psy2897 76 IPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKT 155 (467)
Q Consensus 76 vpvg~~lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt 155 (467)
||||++|||||+|++|+|||+.+++...++||++.+||++.+|.++++||.||||+||+|+|||||||++|||++|+|||
T Consensus 100 vpvG~~lLGRV~d~lG~PiD~~~~i~~~~~~pi~~~~p~~~~r~~~~e~l~TGirvID~l~pigkGqr~gIfgg~GvGKT 179 (498)
T 1fx0_B 100 VPVGGPTLGRIFNVLGEPVDNLRPVDTRTTSPIHRSAPAFTQLDTKLSIFETGIKVVNLLAPYRRGGKIGLFGGAGVGKT 179 (498)
T ss_dssp EEESSTTTTCEECTTSCBCSSSSCCCCSEEEESCCCCCCGGGCCCCCCCCCCSCTTHHHHSCCCTTCCEEEEECSSSSHH
T ss_pred EecCccceeeEEcccccCCCCcCCcCCCceeccccCCCchhhhcccccccccceeEeeeecccccCCeEEeecCCCCCch
Confidence 99999999999999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCC-ceEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy2897 156 VNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEK-SKVSMVYGQMNEPSGNRLRVALTGLTIAE 234 (467)
Q Consensus 156 ~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~-~~~vvv~~t~d~~~~~r~~~~~~a~~~AE 234 (467)
+|++|+++|+++++++++||++||||++|++||++++.+.+++++. ..+ +|+++|++|+|+||.+|++++++|+++||
T Consensus 180 ~L~~~l~~~~a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~-~l~~~rtvvV~~t~d~p~~~R~~~~~~altiAE 258 (498)
T 1fx0_B 180 VLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQ-NIAESKVALVYGQMNEPPGARMRVGLTALTMAE 258 (498)
T ss_dssp HHHHHHHHHTTTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSS-TTCCCCEEEEEECTTSCHHHHTTHHHHHHHTHH
T ss_pred HHHHHHHHHHHhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccc-cccccceEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999998877789999999999999999999999999888521 111 38999999999999999999999999999
Q ss_pred HHHH-CCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCCCCCceeEEEEEEecCCCCCCCc
Q psy2897 235 GFRD-EGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQAVYVPADDLTDPS 313 (467)
Q Consensus 235 ~fr~-~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~~~GSiT~~~tv~~~~~d~~dpi 313 (467)
|||| +|+|||+++||+||||+|+||||+++||||+++||||++|++|++|+||||+.++||||+||||++|+||++|||
T Consensus 259 yfrd~~G~dVLl~~DsitR~A~A~rEvs~~lge~Ps~~GYpp~l~~~l~~L~ERag~~~~GSIT~i~tV~v~~dD~tdPi 338 (498)
T 1fx0_B 259 YFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAVYVPADDLTDPA 338 (498)
T ss_dssp HHTTTSCCEEEEEEECSHHHHHHHHHHHHHHTCCCCGGGCCTTHHHHHHHTSSSSSCCTTCEECCEEEEECGGGCSSSHH
T ss_pred HHHHhcCCcEEEEeccHHHHHHHHHHHHhhcCCCCccccCCchhhhHHHHHHHhccCCCCCceeeeEEEEccCCCcCCcc
Confidence 9999 899999999999999999999999999999999999999999999999999989999999999999999999999
Q ss_pred ccccccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHH
Q psy2897 314 PATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDK 393 (467)
Q Consensus 314 ~~~~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~~~~ 393 (467)
||++++|+||||+|||+||++||||||||+.|+||+|++.+++++|+++++++|++|++|+++++|++++|+++++++++
T Consensus 339 ~d~~~~ilDG~ivLsR~La~~giyPAID~l~S~SR~~~~~i~~~~h~~~a~~lr~~la~y~el~~li~i~G~d~ls~~d~ 418 (498)
T 1fx0_B 339 PATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYEIAQRVKETLQRYKELQDIIAILGLDELSEEDR 418 (498)
T ss_dssp HHHHHTTCSEEEEBCSTTTTTTCSSCBCSSSCCBTTCSTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTSCTTTH
T ss_pred hHHHHHhhCceEEehhhHHhCCCCceeccccccccCCCcccCCHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCcCCHHHH
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhcCCCCCCchhhhcccCCHHHHHHHHHhhc
Q psy2897 394 LLVARARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAIKKSKKLM 466 (467)
Q Consensus 394 ~~~~~~~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~ 466 (467)
.+++++++|++||+|+++++|.||+.+|++++++||+..|.+|++|++|++|++.|||+|+|+|+++|++++.
T Consensus 419 ~~l~~~~~i~~fL~Q~~~v~e~ft~~~g~~v~~~~t~~~l~~il~g~~d~~pe~~~~~~g~~~~~~~~~~~~~ 491 (498)
T 1fx0_B 419 LTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDSLPEQAFYLVGNIDEATAKAMNLE 491 (498)
T ss_dssp HHHHHHHHHHHHTCCCCSSCTTTSCSCCCCCCHHHHHHHHHTTTTTTTSSSCGGGTTTCSSSGGGCC------
T ss_pred HHHHHHHHHHHHHcCCchHHHHhhcCCCcccCHHHHHHHHHHHhcCcccCCCHHHhhcCCCHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987753
No 2
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=100.00 E-value=3.5e-125 Score=989.35 Aligned_cols=463 Identities=67% Similarity=1.069 Sum_probs=444.1
Q ss_pred CCceEEEEEcceEEEEecCCCcceeeeeeeee--CceEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecCC
Q psy2897 2 SDGKIIQCIGSVVDVEFPHNMVPKIYNALKIE--NSELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVG 79 (467)
Q Consensus 2 ~~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~--~~~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpvg 79 (467)
++|+|++|+|++|+|.|+ ..++.+++.|.+. +.++.+||+++++++.+++++|++++||++|+.|++|+++++||||
T Consensus 13 ~~G~v~~v~G~vv~v~~~-~~~~~i~~~~~i~~~~~~~~~eV~~~~~~~~v~~~~~~~t~Gl~~G~~V~~tg~~~~vpvG 91 (482)
T 2ck3_D 13 TTGRIVAVIGAVVDVQFD-EGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVG 91 (482)
T ss_dssp CEEEEEEEETTEEEEEES-SCCCCTTCEEEESSCSSCCEEEEEEEEETTEEEEEESSCCTTCBTTCEEEECSSSCEEECS
T ss_pred cceEEEEEEccEEEEEec-CccCcccceEEEeeCCCcEEEEEeEEecCCeEEEEeccCccCCCCCCEEEEcCCcceeecc
Confidence 479999999999999997 3467788888886 3468999999888999999999999999999999999999999999
Q ss_pred CCCcceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhhHH
Q psy2897 80 KATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMM 159 (467)
Q Consensus 80 ~~lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L~~ 159 (467)
++|||||+|++|+|||+.+++...++||++.++|++++|.++++|+.||||+||+|+|||||||++|||++|+|||+|++
T Consensus 92 ~~lLGRV~d~lG~PiDg~~~~~~~~~~pi~~~~P~~~~r~~~~e~l~TGir~ID~l~pigkGQr~~Ifgg~G~GKT~L~~ 171 (482)
T 2ck3_D 92 PETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIM 171 (482)
T ss_dssp GGGBTCEECTTSCBCSSSCSCCCCCEEESCCCCCCGGGCCCCCCEECCSCHHHHHHSCEETTCEEEEEECTTSSHHHHHH
T ss_pred ccccCCEEcccCcCcCCcCCCCccccccccccCCchHHhcccCcCCccceEEEecccccccCCeeeeecCCCCChHHHHH
Confidence 99999999999999999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHH-
Q psy2897 160 ELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRD- 238 (467)
Q Consensus 160 ~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~- 238 (467)
|+++|+++++++++||++||||++|++||++++.+.+++++. .+++|+++|++|+|+||.+|++++++|+++||||||
T Consensus 172 ~i~~~~~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~-~~~~rtvvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~ 250 (482)
T 2ck3_D 172 ELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLK-DATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQ 250 (482)
T ss_dssp HHHHHTTTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSS-SSCCCEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhHhhCCCEEEEEECCCcchHHHHHHHHhhhccccccc-cCCceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999998777789999999999999999999999998887521 234599999999999999999999999999999999
Q ss_pred CCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCCCCCceeEEEEEEecCCCCCCCcccccc
Q psy2897 239 EGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQAVYVPADDLTDPSPATTF 318 (467)
Q Consensus 239 ~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~~~GSiT~~~tv~~~~~d~~dpi~~~~~ 318 (467)
+|+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+.++||||+|+||++|+||++|||||+++
T Consensus 251 ~G~dVLll~DsitR~A~A~rEis~~lge~P~~~GYpp~l~~~l~~l~ERag~~~~GSIT~i~tv~v~~dD~tdPi~d~~~ 330 (482)
T 2ck3_D 251 EGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTF 330 (482)
T ss_dssp TCSCEEEEEECTHHHHHHHHHHHGGGTCCCCGGGCCTTHHHHHHHHHTTSSCCSSCCEEEEEEEECGGGCTTSHHHHHHG
T ss_pred cCCcEEEEeccHHHHHHHHHHhhhhcCCCCccccCchhHHHHhHHHHHhhcCCCCCceeeeEEEEecCCCCCCccHHHHH
Confidence 89999999999999999999999999999999999999999999999999998999999999999999999999999999
Q ss_pred cccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q psy2897 319 AHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVAR 398 (467)
Q Consensus 319 ~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~~~~~~~~~ 398 (467)
+|+||||+|||+||++||||||||+.|+||+|++.+++++|+++++++|++|++|+++++|++++|+++++++++.++++
T Consensus 331 ~i~dG~ivLsr~La~~giyPAIDvl~S~SR~~~~~i~~~~~~~~a~~lr~~la~y~el~~li~i~G~~~l~~~d~~~l~~ 410 (482)
T 2ck3_D 331 AHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSR 410 (482)
T ss_dssp GGCSEEEEBCHHHHTTTCSSCBCTTSCEETTCSHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSCHHHHHHHHH
T ss_pred HhcCeEEEEcHHHHhCCCCCccCcccccccCCCcccCCHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCcCCHHHHHHHHH
Confidence 99999999999999999999999999999999777899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhcCCCCCCchhhhcccCCHHHHHHHHHhhc
Q psy2897 399 ARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAIKKSKKLM 466 (467)
Q Consensus 399 ~~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~ 466 (467)
+++|++||+|+++++|.||+.+|++++++||+..|.+|++|++|++|++.|||+|+|+|+++|++++.
T Consensus 411 ~~~i~~fL~Q~~~v~~~f~~~~g~~~~~~~t~~~l~~il~g~~d~~pe~~~~~~g~~~~~~~~~~~~~ 478 (482)
T 2ck3_D 411 ARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLA 478 (482)
T ss_dssp HHHHHHHTCCCCGGGHHHHSSCCCCCCHHHHHHHHHHHHTTTTTTSCGGGGTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchHHHHhhcCccccCCHHHHHHHHHHHhcccccCCCHHHhcCcCcHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999998763
No 3
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=100.00 E-value=4e-118 Score=938.14 Aligned_cols=459 Identities=64% Similarity=1.036 Sum_probs=444.1
Q ss_pred CCCceEEEEEcceEEEEecCCCcceeeeeeeeeC-----c----eEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecC
Q psy2897 1 MSDGKIIQCIGSVVDVEFPHNMVPKIYNALKIEN-----S----ELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTG 71 (467)
Q Consensus 1 ~~~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~~-----~----~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg 71 (467)
|+.|+|++|+|++|+|.|+....+.+++.|++.. . .+.+||+++++++.+.+++|+++.||++|+.|++|+
T Consensus 1 ~~~G~v~~v~G~vv~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~ev~~~~~~~~v~~~~~~~t~gl~~G~~V~~tg 80 (473)
T 1sky_E 1 MTRGRVIQVMGPVVDVKFENGHLPAIYNALKIQHKARNENEVDIDLTLEVALHLGDDTVRTIAMASTDGLIRGMEVIDTG 80 (473)
T ss_dssp CCEEEEEEEETTEEEEEESTTCCCCTTEEEEEEECCSSTTCCCEEEEEEEEEEEETTEEEEEESSCCTTCCTTCEEEEEE
T ss_pred CCceEEEEEECcEEEEEecCCcccccCCEEEEEecCCCCCccccceEEEEeEEecCCcEEEEEecCccCCCCCCEEEEcC
Confidence 7899999999999999998665778889998852 2 489999998889999999999999999999999999
Q ss_pred CceeecCCCCCcceEEEeecCcCCCCCCcccc-cccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCC
Q psy2897 72 KPIMIPVGKATLGRIINVLGDPIDEKGNISNK-YVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGA 150 (467)
Q Consensus 72 ~~~~vpvg~~lLGRVld~lG~PiDg~~~~~~~-~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~ 150 (467)
++++||||++|||||+|++|+|||+.+++... ++||++.++|++++|.++++|+.||||+||.|.|++||||++|||++
T Consensus 81 ~~~~vpvg~~llGrv~d~lG~piD~~g~i~~~~~~~pi~~~~p~~~~r~~~~e~l~TGir~ID~L~pi~kGq~~~i~G~s 160 (473)
T 1sky_E 81 APISVPVGQVTLGRVFNVLGEPIDLEGDIPADARRDPIHRPAPKFEELATEVEILETGIKVVDLLAPYIKGGKIGLFGGA 160 (473)
T ss_dssp EECEEECSGGGTTCEECTTSCBCSSSCCCCTTSCEEESCCCCCCGGGBCCSCCEECCSCHHHHHHSCEETTCEEEEECCS
T ss_pred CcceeeccccceeeEEeecCCccCcccccCCCceeecccccCcchhhhcccCccccccchHHHHHhhhccCCEEEEECCC
Confidence 99999999999999999999999999998876 78999999999999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHH
Q psy2897 151 GVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGL 230 (467)
Q Consensus 151 g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~ 230 (467)
|+|||+|+.+++.++++++.+++||++||||.+|+++|++++.+.++++ |+++|++++++||..|++++++++
T Consensus 161 GvGKTtL~~~l~~~~~~~~~~i~V~~~iGerttev~el~~~l~~~~~l~-------~tvvv~~~~~d~pg~r~~~~~~~l 233 (473)
T 1sky_E 161 GVGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYHEMKDSGVIS-------KTAMVFGQMNEPPGARMRVALTGL 233 (473)
T ss_dssp SSCHHHHHHHHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHHHTSGGG-------GEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHhhhhhccCcEEEEeeeccCchHHHHHHHHhhhcCCcc-------eeEEEEEcCCCCHHHHHHHHHHHH
Confidence 9999999999999988878899999999999999999999999988887 999999999999999999999999
Q ss_pred HHHHHHHH-CCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCCCCCceeEEEEEEecCCCC
Q psy2897 231 TIAEGFRD-EGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQAVYVPADDL 309 (467)
Q Consensus 231 ~~AE~fr~-~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~~~GSiT~~~tv~~~~~d~ 309 (467)
++||||++ +|+|||+++||+||||+|+||+|+++||||+++||||++|+.|++|+||||+.++||||++|||++|+||+
T Consensus 234 tiAEyFrd~~G~~VLl~~D~itR~a~A~reis~~~ge~P~~~GYp~~~~~~l~~l~ERa~~~~~GSIT~i~tv~~~~dD~ 313 (473)
T 1sky_E 234 TMAEYFRDEQGQDGLLFIDNIFRFTQAGSEVSALLGRMPSAIGYQPTLATEMGQLQERITSTAKGSITSIQAIYVPADDY 313 (473)
T ss_dssp HHHHHHHHHSCCEEEEEEECTHHHHHHHHHHHHHHTCCCCGGGCCTTHHHHHHHHHTTSSCBSSCEEEEEEECCCSTTCS
T ss_pred HHHHHHHHhcCCcEEEEeccHHHHHHHHHHHHhhcCCCCccccCCchhhhHHHHHHHHhcCCCCCceEEEEEEEecCCCC
Confidence 99999999 89999999999999999999999999999999999999999999999999998999999999999999999
Q ss_pred CCCcccccccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy2897 310 TDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELS 389 (467)
Q Consensus 310 ~dpi~~~~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~ 389 (467)
+|||||++++|+||||+|||+||++||||||||+.|+||+|++.+++++|+++++++|++|++|+++++|++++||++++
T Consensus 314 ~dpi~~~~~~i~dg~ivLsr~La~~g~yPAId~l~S~SR~~~~~~~~~~~~~~a~~lr~~la~y~e~~~li~i~g~~~ls 393 (473)
T 1sky_E 314 TDPAPATTFSHLDATTNLERKLAEMGIYPAVDPLVSTSRALAPEIVGEEHYQVARKVQQTLERYKELQDIIAILGMDELS 393 (473)
T ss_dssp SSHHHHHHHTTCSEEEEBCTTHHHHTCSSCBCTTTCCBTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCT
T ss_pred CCcchHHHHhhcCceEEecHHHHhCCCCCccccccccccccchhcCCHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccCC
Confidence 99999999999999999999999999999999999999999777889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhcCCCCCCchhhhcccCCHHHHHHHHHhhc
Q psy2897 390 PEDKLLVARARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAIKKSKKLM 466 (467)
Q Consensus 390 ~~~~~~~~~~~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~ 466 (467)
++|+.+++++++|++||+|+++++|.||+.+|++++++||++.|++|+.|++|++|++.|||+|+|+|+++|++++.
T Consensus 394 ~~d~~~l~~~~~i~~fL~Q~~~~~~~~~~~~~~~~~~~~t~~~l~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 470 (473)
T 1sky_E 394 DEDKLVVHRARRIQFFLSQNFHVAEQFTGQPGSYVPVKETVRGFKEILEGKYDHLPEDRFRLVGRIEEVVEKAKAMG 470 (473)
T ss_dssp THHHHHHHHHHHHHHHTCBCCTTTHHHHSCCCCCCCHHHHHHHHHHHHTTTTTTSCGGGSTTBSSSHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHcCCchHhhhhhccCCccCCHHHHHHHHHHHhcccccCCCHHHhcccCCHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998863
No 4
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=100.00 E-value=4.1e-111 Score=884.00 Aligned_cols=423 Identities=22% Similarity=0.336 Sum_probs=395.4
Q ss_pred CCceEEEEEcceEEEEecCCCcceeeeeeeeeCceEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecCCCC
Q psy2897 2 SDGKIIQCIGSVVDVEFPHNMVPKIYNALKIENSELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKA 81 (467)
Q Consensus 2 ~~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~~~~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpvg~~ 81 (467)
.+|+|++|.|+++++.|+. -..++++|++.+ +..+||+++ +++.+.+++|+++.||++|+.|++||++++||||++
T Consensus 27 ~~G~V~~v~g~i~~v~Gl~--~~~~gElv~~~~-~~~g~v~~l-~~d~v~~~~~~~~~gi~~G~~V~~tg~~~~VpvG~~ 102 (513)
T 3oaa_A 27 NEGTIVSVSDGVIRIHGLA--DCMQGEMISLPG-NRYAIALNL-ERDSVGAVVMGPYADLAEGMKVKCTGRILEVPVGRG 102 (513)
T ss_dssp TEEEEEEEETTEEEEEECT--TCBTTCEEEETT-TEEEEEEEE-CSSCEEEEESSCCSSCCTTCEEECCSCSSEEECSGG
T ss_pred eEEEEEEEECcEEEEECCc--cCCcCCEEEECC-CCEEEEEEe-eCCEEEEEEeCCccCCCCCCEEEEcCCCCeEeeCHH
Confidence 3699999999999999964 234567777853 388999996 568999999999999999999999999999999999
Q ss_pred CcceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhhHHHH
Q psy2897 82 TLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMEL 161 (467)
Q Consensus 82 lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L~~~i 161 (467)
|||||+|++|+|||+++++....++|++.+||++++|.++++||+||||+||+|+|||||||++|||++|+|||+|+.++
T Consensus 103 lLGRV~d~lG~PiDg~g~i~~~~~~pi~~~ap~~~~R~~v~epl~TGikaID~l~PigrGQR~~Ifg~~g~GKT~l~l~~ 182 (513)
T 3oaa_A 103 LLGRVVNTLGAPIDGKGPLDHDGFSAVEAIAPGVIERQSVDQPVQTGYKAVDSMIPIGRGQRELIIGDRQTGKTALAIDA 182 (513)
T ss_dssp GTTCEEETTSCBTTCSCSCCCSCEEESSCCCCCSSSCCCCCCBCCCSCHHHHHHSCCBTTCBCEEEESSSSSHHHHHHHH
T ss_pred HhccchhhcCcCccCCCCCCccceeecccCCCCccccCCcCcccccceeeeccccccccCCEEEeecCCCCCcchHHHHH
Confidence 99999999999999999999889999999999999999999999999999999999999999999999999999997655
Q ss_pred HHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q psy2897 162 INNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGK 241 (467)
Q Consensus 162 ~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g~ 241 (467)
+.|+ +..+.+|||++||||++|+++|++++.++|+++ ||++|++|+|+||.+|++++|+|+++||||||+|+
T Consensus 183 I~n~-~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~-------~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~ 254 (513)
T 3oaa_A 183 IINQ-RDSGIKCIYVAIGQKASTISNVVRKLEEHGALA-------NTIVVVATASESAALQYLAPYAGCAMGEYFRDRGE 254 (513)
T ss_dssp HHTT-SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCST-------TEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhh-ccCCceEEEEEecCChHHHHHHHHHHhhcCccc-------ceEEEEECCCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 5554 233345899999999999999999999999998 99999999999999999999999999999999999
Q ss_pred cEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCC---------------CCCceeEEEEEEecC
Q psy2897 242 DVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAST---------------KKGSITSIQAVYVPA 306 (467)
Q Consensus 242 ~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~---------------~~GSiT~~~tv~~~~ 306 (467)
|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+. ++||||++|+|++++
T Consensus 255 dVLli~Dsltr~A~A~REisl~lgepP~r~gYP~~vf~~~srLlERAg~~~~~~~~~~~~~~~~g~~GSITal~~V~~~~ 334 (513)
T 3oaa_A 255 DALIIYDDLSKQAVAYRQISLLLRRPPGREAFPGDVFYLHSRLLERAARVNAEYVEAFTKGEVKGKTGSLTALPIIETQA 334 (513)
T ss_dssp EEEEEEETHHHHHHHHHHHHHHTTCCBCTTSCBTTHHHHHHHHHTTCSEECHHHHHHHHTTSCCSCCEEEEECCEEECGG
T ss_pred CEEEEecChHHHHHHHHHHHHhcCCCCcccCCCchhhhhcchHHHHHhhcccccchhccccccCCCCcceEEEEEEEcCC
Confidence 99999999999999999999999999999999999999999999999962 389999999999999
Q ss_pred CCCCCCcccccccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy2897 307 DDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMD 386 (467)
Q Consensus 307 ~d~~dpi~~~~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~ 386 (467)
||++||||+++++|+||||+|||+||++||||||||+.|+||+| ...+.++|++++.++|+.|++|+|+++++++ | +
T Consensus 335 dD~s~pIp~~~~si~DGqIvLsr~La~~giyPAIdvl~SvSRv~-~~~~~~~~~~va~~lr~~la~y~el~~~~~~-g-~ 411 (513)
T 3oaa_A 335 GDVSAFVPTNVISITDGQIFLETNLFNAGIRPAVNPGISVSRVG-GAAQTKIMKKLSGGIRTALAQYRELAAFSQF-A-S 411 (513)
T ss_dssp GCCSSHHHHHHHHHSSEEEEECHHHHTTSCCSCBCTTTCEESSG-GGGSCHHHHHHHHHHHHHHHHHHHHHHHHTT-C-C
T ss_pred CCccCcchHhhhccCCeEEEEehhHHhCCCCCccCccccccccC-cccccHHHHHHHHHHHHHHHHHHHHHHHHHh-h-c
Confidence 99999999999999999999999999999999999999999999 5666799999999999999999999999986 6 4
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhcCCCCCCchhhh
Q psy2897 387 ELSPEDKLLVARARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISSGELDNIPEQAF 449 (467)
Q Consensus 387 ~~~~~~~~~~~~~~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~g~~d~~~~~~~ 449 (467)
.++++++.+++++++|++||+|+.+ ++.+++|++..|+++..|++|++|.+..
T Consensus 412 ~ld~~~~~~l~~~~~i~~fL~Q~~~----------~~~~~~e~~~~l~a~~~g~ld~~~~~~~ 464 (513)
T 3oaa_A 412 DLDDATRKQLDHGQKVTELLKQKQY----------APMSVAQQSLVLFAAERGYLADVELSKI 464 (513)
T ss_dssp SCCHHHHHHHHHHHHHHHHTCCCSS----------CCCCTTHHHHHHHHHHSCTTTTTCCHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCCC----------CCCCHHHHHHHHHHHhcCCCccCCHHHH
Confidence 7899999999999999999999988 7999999999999999999999997654
No 5
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=100.00 E-value=1e-110 Score=875.57 Aligned_cols=433 Identities=23% Similarity=0.328 Sum_probs=401.9
Q ss_pred CCceEEEEEcceEEEEecCCCcceeeeeeeee---CceEEEEEEEEecCcEEEEEEcCCCcCCC-CCceEEecCCceeec
Q psy2897 2 SDGKIIQCIGSVVDVEFPHNMVPKIYNALKIE---NSELTLEVQQQLGDGIVRTIVLGTSEGLR-RGTIVKNTGKPIMIP 77 (467)
Q Consensus 2 ~~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~---~~~~~~EVv~~~~~~~v~l~~l~~~~Gl~-~G~~V~~tg~~~~vp 77 (467)
.+|+|++|.|+++++.|.. -+.++++|++. +..+.+||+++. ++.+.+++|+++.||+ .|+.|++||++++||
T Consensus 11 ~~g~v~~v~g~~v~v~gl~--~~~~ge~v~i~~~~g~~~~geVv~~~-~~~~~~~~~~~~~gl~~~g~~V~~tg~~~~vp 87 (465)
T 3vr4_D 11 EYRTIKEVVGPLMAVEKVS--GVKYEELIEVRMQNGEIRRGQVLEVQ-EDKAMVQIFEGTSGINLKNSSVRFLGHPLQLG 87 (465)
T ss_dssp CBCCEEEEETTEEEEESCC--SCCTTCEEEEECTTSCEEEEEEEEEE-SSEEEEEETTCCTTCCTTTCEEEECSSCCEEE
T ss_pred eEEEEEEEECCEEEEecCC--CCCcCCEEEEEcCCCCEEEEEEEEEe-CCeEEEEEecCccccccCCCEEEECCCcceee
Confidence 3799999999999999853 23355777774 336899999976 5799999999999999 999999999999999
Q ss_pred CCCCCcceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhh
Q psy2897 78 VGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVN 157 (467)
Q Consensus 78 vg~~lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L 157 (467)
||++|||||+|++|+|||+.+++....++|+++.||+|++|.++++|+.||||+||+|+|||||||++|||++|+|||+|
T Consensus 88 vg~~lLGRV~d~lG~PiD~~~~i~~~~~~~i~~~~p~p~~R~~~~e~l~TGiraID~l~pigrGQr~~Ifgg~G~GKt~L 167 (465)
T 3vr4_D 88 VSEDMIGRVFDGLGRPKDNGPEILPEKYLDINGEVINPIARDYPDEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHKEL 167 (465)
T ss_dssp ECGGGTTEEEETTSCBCSCCCCCCCSEEEESSCCCBCTTTEECCCCBCBCSCHHHHTTSCCBTTCBCCEEECTTSCHHHH
T ss_pred cchhhccceeccCCcccCCCCCCcccceeeccCcccCchhccCcccccccCceEEecccccccCCEEEEeCCCCcChHHH
Confidence 99999999999999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCC----EEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHH
Q psy2897 158 MMELINNIAKAHSG----LSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIA 233 (467)
Q Consensus 158 ~~~i~~~~~~~~~d----v~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~A 233 (467)
+.||+++..+ +.| +|||++||||++|++||++++.++|+++ ||++|++|+|+||.+|++++|+|+++|
T Consensus 168 ~~~Ia~~~~~-~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~-------rtvvV~atsd~p~~~r~~a~~~a~tiA 239 (465)
T 3vr4_D 168 AAQIARQATV-LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAID-------RSVMFMNLANDPAIERIATPRMALTAA 239 (465)
T ss_dssp HHHHHHHCBC-SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGG-------GEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCcc-------ceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 9998886433 234 7999999999999999999999999998 999999999999999999999999999
Q ss_pred HHHHH-CCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcC--CCCCceeEEEEEEecCCCCC
Q psy2897 234 EGFRD-EGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAS--TKKGSITSIQAVYVPADDLT 310 (467)
Q Consensus 234 E~fr~-~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~--~~~GSiT~~~tv~~~~~d~~ 310 (467)
||||| +|+|||++|||+||||+|+||||+++||||+++||||++|+.|++|+||||+ .++||||+||||++|+||++
T Consensus 240 Eyfrd~~G~~VLl~~DslTr~A~A~REisl~lge~P~~~GYp~~vf~~l~~l~ERAg~~~~~~GSIT~i~tv~~~~dD~~ 319 (465)
T 3vr4_D 240 EYLAYEKGMHVLVIMTDMTNYAEALREISAARREVPGRRGYPGYLYTNLATLFERAGRIRGLKGSVTQIPILTMPEDDKT 319 (465)
T ss_dssp HHHHHTTCCEEEEEEECHHHHHHHHHHHHHHTTCCCCGGGSCTTHHHHHHHHHTSCEEETTCSCEEEEEEEEECGGGCTT
T ss_pred HHHHHhcCCeEEEEEcChHHHHHHHHHHHhhcCCCCccccCCchHHHHhHHHHHhhhccCCCCCcEEEEEEEEecCCCcc
Confidence 99999 5999999999999999999999999999999999999999999999999997 45899999999999999999
Q ss_pred CCcccccccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCcccc-----HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy2897 311 DPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVG-----KKHYKIARLVQSTLQRYKELRDIISILGM 385 (467)
Q Consensus 311 dpi~~~~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~-----~~~~~~a~~~r~~la~~~~~~~~i~~~g~ 385 (467)
|||||++++|+||||+|||+||++||||||||+.|+||+| +.+++ ++|++++++++++|++|+++++++++.|.
T Consensus 320 ~pI~~~~~~i~dg~ivLsr~La~~g~yPAIdvl~S~SR~m-~~~ig~~~~~~~h~~~a~~l~~~~~~~~el~~i~~~~G~ 398 (465)
T 3vr4_D 320 HPIPDLTGYITEGQIILTRELYKSGIQPPIDVLPSLSRLK-DKGTGAGKTREDHAATMNQLFAAYAQGKQAKELAVVLGE 398 (465)
T ss_dssp SHHHHHHHHHSSEEEEBCHHHHHTTCSSCBCTTTCEETTG-GGSCSTTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cchhHHHhhhcCeEEEEcHHHHhCCCCCCCCccccchhcc-hhhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999999999999999999999999999 45556 89999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHH-HHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhcCCCCCCchhhhcccCCHHHHHHHH
Q psy2897 386 DELSPEDKLLVARARKM-QRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAIKKS 462 (467)
Q Consensus 386 ~~~~~~~~~~~~~~~~i-~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~g~~d~~~~~~~~~~~~~~~~~~~~ 462 (467)
++++++|+..+.+++++ ++||+|+++ ++.++++++..+|+++. .+|..++.-+- ++.+.||
T Consensus 399 d~L~~~d~~~~~~~~~~~~~fL~Q~~~----------e~~~~~~~~~~l~~~l~----~~p~~~~~~~~--~~~~~~~ 460 (465)
T 3vr4_D 399 SALSDIDKIYAKFAERFENEYVNQGFY----------TNRTITETLDLGWELLA----MLPRTELKRIK--DDLLDKY 460 (465)
T ss_dssp TSCCHHHHHHHHHHHHHHHHTTCCCTT----------CCCCHHHHHHHHHHHHT----TSCTTTCTTSC--HHHHHHH
T ss_pred CCCCHHHHHHHHhhHHHHHHHhCCCCC----------CCCCHHHHHHHHHHHHh----hCCHHHHHHHH--HHHHHHh
Confidence 99999999999999998 599999988 79999999999999988 48887775443 4777777
No 6
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=100.00 E-value=1.2e-110 Score=879.57 Aligned_cols=435 Identities=23% Similarity=0.335 Sum_probs=382.9
Q ss_pred CCceEEEEEcceEEEEecCCCcceeeeeeeee--Cc-eEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecC
Q psy2897 2 SDGKIIQCIGSVVDVEFPHNMVPKIYNALKIE--NS-ELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPV 78 (467)
Q Consensus 2 ~~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~--~~-~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpv 78 (467)
++|+|++|.|+++++.|+. .+.++++|++. ++ ...+||+++. ++.+.+++|+++.||++|+.|++|+++++|||
T Consensus 13 ~~g~V~~V~g~vv~v~g~~--~~~~ge~v~i~~~~g~~~~geV~~~~-~~~v~~~~~~~t~gl~~G~~V~~tg~~l~vpv 89 (469)
T 2c61_A 13 EYKTITQIAGPLIFVEKTE--PVGYNEIVNIKMGDGTVRRGQVLDSS-ADIVVVQVFEGTGGLDKDCGVIFTGETLKLPA 89 (469)
T ss_dssp ---------CCEEEEECCS--CCCTTCEEEEECTTSCEEEEEEEEEC-SSEEEEEEC-------------CEEEBCEEEE
T ss_pred cccEEEEEECcEEEEeeCC--CCCcCCEEEEEeCCCCEEEEEEEEEe-CCEEEEEEeCCCcCCCCCCEEEEcCCCcEEEc
Confidence 3799999999999999973 35567888885 33 5779999975 58999999999999999999999999999999
Q ss_pred CCCCcceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhhH
Q psy2897 79 GKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNM 158 (467)
Q Consensus 79 g~~lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L~ 158 (467)
|++|||||+|++|+|||+.+++....++|++++||+|++|.++++|+.||||+||+|+|||||||++|||++|+|||+|+
T Consensus 90 g~~lLGRV~d~lG~PiDg~~~i~~~~~~~i~~~~p~p~~R~~~~e~l~TGir~ID~l~pigrGQr~~Ifgg~G~GKt~Ll 169 (469)
T 2c61_A 90 SVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEIA 169 (469)
T ss_dssp CGGGTTCEEETTSCBSSSCCCCCCSEEEESSSCSSCCBCSCCCCSBCBCSCHHHHTTSCCBTTCBCCEEECTTSCHHHHH
T ss_pred cccceeeEEcccCCCCCCCCCCCccccccccCccCCcccccccccccceeeEeeeeeeccccCCEEEEECCCCCCHHHHH
Confidence 99999999999999999999988778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhC---CCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy2897 159 MELINNIAKAH---SGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEG 235 (467)
Q Consensus 159 ~~i~~~~~~~~---~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~ 235 (467)
.+|+++...++ +++|||++||||++|++||++++.+.++++ ||++|++|+|+||.+|++++|+|+|+|||
T Consensus 170 ~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~-------rtvvV~~tsd~p~~~r~~~~~~a~tiAEy 242 (469)
T 2c61_A 170 LQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALE-------RAVVFLNLADDPAVERIVTPRMALTAAEY 242 (469)
T ss_dssp HHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGG-------GEEEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCcc-------ceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 99999765433 268999999999999999999999999998 99999999999999999999999999999
Q ss_pred HHH-CCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcC--CCCCceeEEEEEEecCCCCCCC
Q psy2897 236 FRD-EGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAS--TKKGSITSIQAVYVPADDLTDP 312 (467)
Q Consensus 236 fr~-~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~--~~~GSiT~~~tv~~~~~d~~dp 312 (467)
||| +|+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+ .++||||+|+||++|+||++||
T Consensus 243 frdd~G~dVLl~~DsltR~A~A~rEis~~lge~P~~~Gyp~~l~~~l~~l~ERAg~~~~~~GSIT~i~~v~~~~dD~~dP 322 (469)
T 2c61_A 243 LAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIVKGAKGSVTQIPILSMPGDDITHP 322 (469)
T ss_dssp HHHHHCCEEEEEEECHHHHHHHHTTSGGGTTCCTTSTTCCTHHHHHHHHHHTSCEEBTTSSCEEEEEEEEECCSCTTTSC
T ss_pred HHHhcCCeEEEEEeCHHHHHHHHHHHHHhcCCCCcccCcCchhhhhhhhHHhhccccCCCCCceeeeeeeecCCCCcCcc
Confidence 995 8999999999999999999999999999999999999999999999999997 5689999999999999999999
Q ss_pred cccccccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCcc----ccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy2897 313 SPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLI----VGKKHYKIARLVQSTLQRYKELRDIISILGMDEL 388 (467)
Q Consensus 313 i~~~~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~----~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~ 388 (467)
|||++++|+||||+|||+||++||||||||+.|+||+|+..+ ++++|+++++++++.|++|++++++.++.|++++
T Consensus 323 I~~~~~~i~dg~ivLsr~La~~g~yPAIdvl~S~SR~~~~~ig~~~~~~~~~~~a~~l~~~l~~~~eL~~i~~~~G~~~l 402 (469)
T 2c61_A 323 IPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSGIGAGKTREDHKAVSDQMYAGYAEGRDLRGLVAIVGKEAL 402 (469)
T ss_dssp CCCCGGGGTTEEEEBCHHHHHTTCSSCBCTTTCEETTGGGSCSTTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGS
T ss_pred hHHHHhhccCcEEEEcHHHHhCCCCCccCccccccccchhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 999999999999999999999999999999999999995543 7899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHH-HhcCCCcccceeccCCCeeecHHHHHHHHHHhhcCCCCCCchhhhcccCCHHHHHHHH
Q psy2897 389 SPEDKLLVARARKMQR-FLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAIKKS 462 (467)
Q Consensus 389 ~~~~~~~~~~~~~i~~-fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~g~~d~~~~~~~~~~~~~~~~~~~~ 462 (467)
+++++.+++++++|++ ||+|+++ ++++++||+..+|++++ .+|..++..+- ++.++||
T Consensus 403 ~d~~~~~l~~~~~i~~~fL~Q~~~----------~~~~~~et~~~l~~~l~----~~~~~~~~~~~--~~~~~~~ 461 (469)
T 2c61_A 403 SERDTKFLEFADLFEDKFVRQGRN----------ENRTIEDTLEIGWQILT----HLPENQLGRID--NKYIQKY 461 (469)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCTT----------CCCCHHHHHHHHHHHHT----TSCGGGCTTSC--HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCC----------CCCCHHHHHHHHHHHHH----hCCHHHHHHHH--HHHHHHH
Confidence 9999999999999996 9999988 68999999999999876 57877664332 4556655
No 7
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=100.00 E-value=2.8e-110 Score=872.03 Aligned_cols=432 Identities=24% Similarity=0.335 Sum_probs=401.2
Q ss_pred CceEEEEEcceEEEEecCCCcceeeeeeeee---CceEEEEEEEEecCcEEEEEEcCCCcCCC-CCceEEecCCceeecC
Q psy2897 3 DGKIIQCIGSVVDVEFPHNMVPKIYNALKIE---NSELTLEVQQQLGDGIVRTIVLGTSEGLR-RGTIVKNTGKPIMIPV 78 (467)
Q Consensus 3 ~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~---~~~~~~EVv~~~~~~~v~l~~l~~~~Gl~-~G~~V~~tg~~~~vpv 78 (467)
+|+|++|.|+++++.|.. -+.++++|++. +..+.+||+++. ++.+.+++|+++.||+ .|+.|++||++++|||
T Consensus 8 ~g~V~~v~g~~v~v~gl~--~~~~ge~v~i~~~~g~~~~geVv~~~-~~~~~~~~~~~~~gl~~~g~~V~~tg~~~~vpv 84 (464)
T 3gqb_B 8 YTGITYISGPLLFVENAK--DLAYGAIVDIKDGTGRVRGGQVIEVS-EEYAVIQVFEETTGLDLATTSVSLVEDVARLGV 84 (464)
T ss_dssp BCCEEEEETTEEEEESCT--TSCTTCEEEEECTTSCEEEEEEEEEE-SSEEEEEESSCCTTCCSSSCEEEEEESSCEEEE
T ss_pred eeEEEEEECCEEEEecCC--CCCcCCEEEEEcCCCCEEEEEEEEEe-CCeEEEEEecCccccccCCCEEEECCCCcEEEe
Confidence 799999999999999853 23355777774 346899999976 5799999999999999 9999999999999999
Q ss_pred CCCCcceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhhH
Q psy2897 79 GKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNM 158 (467)
Q Consensus 79 g~~lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L~ 158 (467)
|++|||||+|++|+|||+++++....++|++..||+|++|.++++|++||||+||+|+|||||||++|||++|+|||+|+
T Consensus 85 g~~lLGRV~d~lG~PiD~~~~i~~~~~~~i~~~~p~p~~R~~~~e~l~TGiraID~l~pigrGQr~~Ifgg~G~GKt~L~ 164 (464)
T 3gqb_B 85 SKEMLGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVARRKPEQFIQTGISTIDVMNTLVRGQKLPIFSGSGLPANEIA 164 (464)
T ss_dssp CSTTTTEEEETTCCBCSSSCCCCCSEEEETTCCCBCGGGBCCCCCBCBCSCHHHHTTSCCBTTCBCCEEEETTSCHHHHH
T ss_pred ChHhcCCEeccCCcccCCCccccCcceeeccCCCCChhhccCccccccCcceeeecccccccCCEEEEecCCCCCchHHH
Confidence 99999999999999999999998888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh---------CCC-EEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHH
Q psy2897 159 MELINNIAKA---------HSG-LSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALT 228 (467)
Q Consensus 159 ~~i~~~~~~~---------~~d-v~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~ 228 (467)
.||+++..++ +++ +|||++||||++|++||++++.++|+++ ||++|++|+|+||.+|++++|+
T Consensus 165 ~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~-------rtvvv~~t~d~p~~~r~~~~~~ 237 (464)
T 3gqb_B 165 AQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALS-------RSVLFLNKADDPTIERILTPRM 237 (464)
T ss_dssp HHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGG-------GEEEEEEETTSCTHHHHHHHHH
T ss_pred HHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhccccc-------ceEEEEECCCCCHHHHHHHHHH
Confidence 9998864331 223 7999999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHHHHHH-CCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcC--CCCCceeEEEEEEec
Q psy2897 229 GLTIAEGFRD-EGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAS--TKKGSITSIQAVYVP 305 (467)
Q Consensus 229 a~~~AE~fr~-~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~--~~~GSiT~~~tv~~~ 305 (467)
|+++|||||+ +|+|||++|||+||||+|+||||+++||||+++||||++|+.|++|+||||+ .++||||++|||++|
T Consensus 238 a~tiAEyfrd~~G~~VLl~~DdlTr~A~A~REisl~lge~P~~~GYp~~~f~~l~~l~ERag~~~~~~GSIT~l~~v~~~ 317 (464)
T 3gqb_B 238 ALTVAEYLAFEHDYHVLVILTDMTNYSEALREIGAAREEIPGRRGYPGYMYTDLATIYERAGVVEGKKGSVTQIPILSMP 317 (464)
T ss_dssp HHHHHHHHHHTTCCEEEEEEETHHHHHHHHHHHHHTTTCCBCGGGSBTTHHHHHHHHHTSCBCBTTCSCEEEEEEEEEET
T ss_pred HHHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHhcCCCCccccCCchHHHHhHHHHHhhcccCCCCCcEEEEEEEEcc
Confidence 9999999999 5999999999999999999999999999999999999999999999999997 358999999999999
Q ss_pred CCCCCCCcccccccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCcccc-----HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2897 306 ADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVG-----KKHYKIARLVQSTLQRYKELRDII 380 (467)
Q Consensus 306 ~~d~~dpi~~~~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~-----~~~~~~a~~~r~~la~~~~~~~~i 380 (467)
+||++||||+++++|+||||+|||+||++||||||||+.|+||+|+ .+++ ++|++++++++++|++|+++++++
T Consensus 318 ~dD~~~pi~~~~~~i~dg~ivLsr~La~~g~yPAIdvl~S~SR~m~-~~ig~~~~~~~h~~~a~~l~~~~~~~~el~~i~ 396 (464)
T 3gqb_B 318 DDDRTHPIPDLTGYITEGQIQLSRELHRKGIYPPIDPLPSLSRLMN-NGVGKGKTREDHKQVSDQLYSAYANGVDIRKLV 396 (464)
T ss_dssp TSCTTSHHHHHHHHHSSEEEEBCHHHHHTTCSSCBCTTTCEETTGG-GTSSTTTSCTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCccCchhHHHhhhcCeEEEEcHHHHhCCCCCCcCcccchhhcch-hhcCcccCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999994 5556 899999999999999999999999
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHH-HHhcCCCcccceeccCCCeeecHHHHHHHHHHhhcCCCCCCchhhhcccCCHHHHH
Q psy2897 381 SILGMDELSPEDKLLVARARKMQ-RFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAI 459 (467)
Q Consensus 381 ~~~g~~~~~~~~~~~~~~~~~i~-~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~g~~d~~~~~~~~~~~~~~~~~ 459 (467)
++.|.++++++|+..+.++++++ +||+|+ + ++.++++++..+|+++.. +|..++.-+. ++.+
T Consensus 397 ~~~G~d~L~~~d~~~~~~~~~~~~~fL~Q~-~----------e~~~~~~s~~~l~~ll~~----~p~~~~~~~~--~~~~ 459 (464)
T 3gqb_B 397 AIIGEDALTENDRRYLQFADAFERFFINQG-Q----------QNRSIEESLQIAWALLSM----LPQGELKRIS--KDHI 459 (464)
T ss_dssp SSSCSCCCCSHHHHTTHHHHHHHHTTTCCT-T----------CCCCHHHHHHHHHHHHTT----SCGGGCTTSC--HHHH
T ss_pred HhcCCCCCCHHHHHHHHhhHHHHHHhcCCC-C----------CCCCHHHHHHHHHHHHHh----CCHHHHhcCC--HHHH
Confidence 99999999999999999999985 899999 7 799999999999999984 8888886554 4677
Q ss_pred HHH
Q psy2897 460 KKS 462 (467)
Q Consensus 460 ~~~ 462 (467)
+||
T Consensus 460 ~~~ 462 (464)
T 3gqb_B 460 GKY 462 (464)
T ss_dssp HHH
T ss_pred HHh
Confidence 776
No 8
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=100.00 E-value=6.4e-110 Score=877.64 Aligned_cols=423 Identities=22% Similarity=0.337 Sum_probs=394.3
Q ss_pred CCceEEEEEcceEEEEecCCCcceeeeeeeeeCceEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecCCCC
Q psy2897 2 SDGKIIQCIGSVVDVEFPHNMVPKIYNALKIENSELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKA 81 (467)
Q Consensus 2 ~~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~~~~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpvg~~ 81 (467)
.+|+|++|.|+++++.|+. -..++++|++..++..+||+++ +++.+.+++|+++.||++|+.|++|+++++||||++
T Consensus 39 ~~G~V~~V~g~iv~v~gl~--~~~~gEl~~i~~~g~~g~v~~l-~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvG~~ 115 (515)
T 2r9v_A 39 DTGKVIQVGDGIARAYGLN--KVMVSELVEFVETGVKGVAFNL-EEDNVGIIILGEYKDIKEGHTVRRLKRIIEVPVGEE 115 (515)
T ss_dssp TEEEEEEEETTEEEEEECT--TCCTTEEEEETTTCCEEEEEEC-CTTCEEEEEESCCTTCCTTCEEEEEEEECEEEESGG
T ss_pred eeeEEEEEECcEEEEecCC--CCCCCCEEEEecCCeEEEEEEe-cCCeEEEEEecCcccccCCCEEEEeCCcceeecCcc
Confidence 3799999999999999973 2335577777322356999985 568999999999999999999999999999999999
Q ss_pred CcceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhhHHHH
Q psy2897 82 TLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMEL 161 (467)
Q Consensus 82 lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L~~~i 161 (467)
|||||+|++|+|||+++++....+||++.+||++++|.++++|++||||+||+|+|||||||++|||++|+|||+|+.++
T Consensus 116 lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~P~~~~R~~v~epl~TGiraID~l~PigrGQR~~I~g~~g~GKT~Lal~~ 195 (515)
T 2r9v_A 116 LLGRVVNPLGEPLDGKGPINAKNFRPIEIKAPGVIYRKPVDTPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTAIAIDT 195 (515)
T ss_dssp GTTCEECTTSCBCSSSCCCCCSEEEESCCCCCCGGGBCCCCSEECCSCHHHHHHSCEETTCBEEEEEETTSSHHHHHHHH
T ss_pred ceeeEEcCCCCCcCCCCCCCccceeecccCCCCcccccCCCcchhcCccccccccccccCCEEEEEcCCCCCccHHHHHH
Confidence 99999999999999999998888999999999999999999999999999999999999999999999999999996655
Q ss_pred HHHHHhhCCC-EEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q psy2897 162 INNIAKAHSG-LSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEG 240 (467)
Q Consensus 162 ~~~~~~~~~d-v~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g 240 (467)
+.|++ +.| +|||++||||++|+++|++++.+.++++ ||++|++|+|+||.+|++++|+|+++||||||+|
T Consensus 196 I~~~~--~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~-------rtvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G 266 (515)
T 2r9v_A 196 IINQK--GQGVYCIYVAIGQKKSAIARIIDKLRQYGAME-------YTTVVVASASDPASLQYIAPYAGCAMGEYFAYSG 266 (515)
T ss_dssp HHTTT--TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGG-------GEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHhh--cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcc-------eeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 54443 356 5899999999999999999999999998 9999999999999999999999999999999999
Q ss_pred CcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCC----CCCceeEEEEEEecCCCCCCCcccc
Q psy2897 241 KDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAST----KKGSITSIQAVYVPADDLTDPSPAT 316 (467)
Q Consensus 241 ~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~----~~GSiT~~~tv~~~~~d~~dpi~~~ 316 (467)
+|||+++||+||||+|+||||+++||||+++||||++|+.+++|+||||+. ++||||+||+|++++||++||||++
T Consensus 267 ~dVLli~DslTr~A~A~REisl~lgepP~r~gYp~~vf~~~~rLlERAg~~~~~~~~GSITal~~v~~~~~D~s~pI~~~ 346 (515)
T 2r9v_A 267 RDALVVYDDLSKHAVAYRQLSLLMRRPPGREAYPGDIFYLHSRLLERAVRLNDKLGGGSLTALPIVETQANDISAYIPTN 346 (515)
T ss_dssp CEEEEEEETHHHHHHHHHHHHHTSCCCTTCCCCCCCHHHHHHHHHTTCEEBCTTTTSCEEEEEEEEEESTTCTTSHHHHH
T ss_pred CcEEEEeccHHHHHHHHHHHhhhcCCCCCcccCChhHHHHhHHHHHHHhhccccCCCcceEEeeeeeccCCCccccchhh
Confidence 999999999999999999999999999999999999999999999999974 5799999999999999999999999
Q ss_pred cccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHH
Q psy2897 317 TFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLV 396 (467)
Q Consensus 317 ~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~~~~~~~ 396 (467)
+++|+||||+|||+||++||||||||+.|+||++ .....++|+++++++|++|++|+|+++++++ | +.++++++.++
T Consensus 347 ~~si~DGqI~Lsr~La~~g~yPAIdvl~SvSRv~-~~~~~~~~~~~a~~lr~~la~y~el~~~~~~-G-~~l~~~~~~~l 423 (515)
T 2r9v_A 347 VISITDGQIYLEPGLFYAGQRPAINVGLSVSRVG-GSAQIKAMKQVAGMLRIDLAQYRELETFAQF-A-TELDPATRAQI 423 (515)
T ss_dssp HHHTSSEEEEBCHHHHHHTCSSCBCTTTCEEGGG-TTTSCHHHHHHHHHHHHHHHHHHHHHTTGGG-C-SCCCHHHHHHH
T ss_pred hccccceEEEEchHHHhCCCCCeeccccccccCC-cccCCHHHHHHHHHHHHHHhhhhHHHHHHHh-c-cCCCHHHHHHH
Confidence 9999999999999999999999999999999999 5667899999999999999999999999775 7 47999999999
Q ss_pred HHHHHHHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhcCCCCCCchhhh
Q psy2897 397 ARARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISSGELDNIPEQAF 449 (467)
Q Consensus 397 ~~~~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~g~~d~~~~~~~ 449 (467)
+++++|++||+|+++ +++++++++..|+++..|++|++|.+..
T Consensus 424 ~~~~~i~~fL~Q~~~----------~~~~~~e~~~~l~~~~~g~ld~i~~~~i 466 (515)
T 2r9v_A 424 IRGQRLMELLKQEQY----------SPMPVEEQVVVLFAGVRGYLDDLPVEEV 466 (515)
T ss_dssp HHHHHHHHHTCCCTT----------CCCCHHHHHHHHHHHHTTTTTTSCGGGH
T ss_pred HHHHHHHHHhcCCCC----------CCCCHHHHHHHHHHHHhhhhccccHHHH
Confidence 999999999999988 7899999999999999999999997654
No 9
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=100.00 E-value=7.3e-110 Score=878.54 Aligned_cols=424 Identities=22% Similarity=0.341 Sum_probs=395.5
Q ss_pred CCceEEEEEcceEEEEecCCCcceeeeeeeeeCceEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecCCCC
Q psy2897 2 SDGKIIQCIGSVVDVEFPHNMVPKIYNALKIENSELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKA 81 (467)
Q Consensus 2 ~~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~~~~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpvg~~ 81 (467)
.+|+|++|.|+++++.|+. -..++++|++.++ ..+||+++ +++.+.+++|+++.||++|+.|++|+++++||||++
T Consensus 27 ~~G~V~~v~g~iv~v~gl~--~~~~ge~~~i~~g-~~g~v~~l-~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvg~~ 102 (510)
T 2ck3_A 27 ETGRVLSIGDGIARVHGLR--NVQAEEMVEFSSG-LKGMSLNL-EPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEE 102 (510)
T ss_dssp SEEEEEEEETTEEEEEECT--TCBTTCEEEETTS-CEEEEEEE-CSSCEEEEESSCGGGCCTTCEEEECCCCCEEEESGG
T ss_pred EEeEEEEEECcEEEEeeCC--CCCCCCEEEECCC-CeEEEEec-cCCeEEEEEECCcccccCCCEEEEeCCcceeecCcc
Confidence 3699999999999999973 2335577778643 56999986 568999999999999999999999999999999999
Q ss_pred CcceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhhHHHH
Q psy2897 82 TLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMEL 161 (467)
Q Consensus 82 lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L~~~i 161 (467)
|||||+|++|+|||+++++....+||++.+||++++|.++++|++||||+||+|+|||||||++|||++|+|||+|+.++
T Consensus 103 lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l~PigrGQR~~I~g~~g~GKT~Lal~~ 182 (510)
T 2ck3_A 103 LLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDT 182 (510)
T ss_dssp GTTCEECTTSCBCSSSCCCCCSEEEESSCCCCCSTTBCCCCSBCCCSCHHHHHHSCCBTTCBCEEEESTTSSHHHHHHHH
T ss_pred ceeeEEccCCcCcCCCCCCCccceeecccCCCCcccccccCccccccceeeccccccccCCEEEEecCCCCCchHHHHHH
Confidence 99999999999999999998888999999999999999999999999999999999999999999999999999996555
Q ss_pred HHHHHhh------CCC-EEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy2897 162 INNIAKA------HSG-LSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAE 234 (467)
Q Consensus 162 ~~~~~~~------~~d-v~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE 234 (467)
+.|+++. +.| +|||++||||++|+++|++++.+.++++ ||++|++|+|+||.+|++++|+|+++||
T Consensus 183 I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~-------~tvvV~atad~p~~~r~~a~~~a~tiAE 255 (510)
T 2ck3_A 183 IINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMK-------YTIVVSATASDAAPLQYLAPYSGCSMGE 255 (510)
T ss_dssp HHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGG-------GEEEEEECTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcc-------cceEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 5555542 245 6999999999999999999999999998 9999999999999999999999999999
Q ss_pred HHHHCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCC----CCCceeEEEEEEecCCCCC
Q psy2897 235 GFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAST----KKGSITSIQAVYVPADDLT 310 (467)
Q Consensus 235 ~fr~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~----~~GSiT~~~tv~~~~~d~~ 310 (467)
||||+|+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+. ++||||++|+|++++||++
T Consensus 256 yfrd~G~dVLli~Dsltr~A~A~REisl~lgepP~r~gYpg~vf~~~~rLlERAg~~~~~~~~GSITal~~v~~~~dD~s 335 (510)
T 2ck3_A 256 YFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVS 335 (510)
T ss_dssp HHHTTTCEEEEEEETHHHHHHHHHHHHHHTTCCCCGGGCCTTHHHHHHHHHTTCEEBCGGGTSCEEEEEEEEECSTTCTT
T ss_pred HHHHcCCcEEEEEcCHHHHHHHHHHHHHhcCCCCccCCcCchHHHhhHHHHHhhhcccccCCCcceeEeeeeccCCCCcc
Confidence 999999999999999999999999999999999999999999999999999999974 5899999999999999999
Q ss_pred CCcccccccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCH
Q psy2897 311 DPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSP 390 (467)
Q Consensus 311 dpi~~~~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~ 390 (467)
||||+++++|+||||+|||+||++||||||||+.|+||+| .....++|+++++++|++|++|+|+++++++ | +.+++
T Consensus 336 ~pI~~~~~si~DgqI~Lsr~La~~gi~PAIdvl~SvSRv~-~~~~~~~~~~~a~~lr~~la~y~el~~~~~~-G-~~l~~ 412 (510)
T 2ck3_A 336 AYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVG-SAAQTRAMKQVAGTMKLELAQYREVAAFAQF-G-SDLDA 412 (510)
T ss_dssp SHHHHHHHHHSSEEEEBCHHHHHHTCSSCBCTTTCEESSG-GGGSCHHHHHHHHHHHHHHHHHHHHGGGSSS-C-SSSCH
T ss_pred ccchHhhhcccceEEEEehhHhhCCCCCcccchhcccccc-cccCCHHHHHHHHHHHHHHHhhhHHHHHHHh-c-CCCCH
Confidence 9999999999999999999999999999999999999999 5667899999999999999999999999774 7 47999
Q ss_pred HHHHHHHHHHHHHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhcCCCCCCchhhh
Q psy2897 391 EDKLLVARARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISSGELDNIPEQAF 449 (467)
Q Consensus 391 ~~~~~~~~~~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~g~~d~~~~~~~ 449 (467)
+++.+++++++|++||+|+++ +++++++++..|+++..|++|++|.+..
T Consensus 413 ~~~~~l~~~~~i~~fL~Q~~~----------~~~~~~~~~~~l~~~~~g~l~~i~~~~i 461 (510)
T 2ck3_A 413 ATQQLLSRGVRLTELLKQGQY----------SPMAIEEQVAVIYAGVRGYLDKLEPSKI 461 (510)
T ss_dssp HHHHHHHHHHHHHHTTCCCSS----------CCCCHHHHHHHHHHHHTTSSTTSCGGGH
T ss_pred HHHHHHHHhHHHHHHhcCCCC----------CCCCHHHHHHHHHHHHhhhhcCCCHHHH
Confidence 999999999999999999988 7899999999999999999999997654
No 10
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=100.00 E-value=8.1e-110 Score=876.74 Aligned_cols=422 Identities=25% Similarity=0.361 Sum_probs=394.7
Q ss_pred CCceEEEEEcceEEEEecCCCcceeeeeeeeeCceEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecCCCC
Q psy2897 2 SDGKIIQCIGSVVDVEFPHNMVPKIYNALKIENSELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKA 81 (467)
Q Consensus 2 ~~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~~~~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpvg~~ 81 (467)
.+|+|++|.|+++++.|+. -..++++|++.++ ..+||+++ +++.+.+++|+++.||++|+.|++||++++||||++
T Consensus 27 ~~G~V~~v~g~iv~v~gl~--~~~~ge~~~i~~g-~~g~v~~l-~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvG~~ 102 (502)
T 2qe7_A 27 EVGTVIQVGDGIARVHGLE--KVMAGELLEFENG-VMGMAQNL-EEDNVGVVILGPYTEIREGTQVKRTGRIMEVPVGEA 102 (502)
T ss_dssp CEEEEEEEETTEEEEECCT--TCBTTEEEEETTS-CEEEEEEE-ETTEEEEEECSCCSSCCTTCEEEEEEEESEEECSGG
T ss_pred EEEEEEEecCcEEEEEECC--CCCCCCEEEECCC-CEEEEEEe-cCCeEEEEEecCccCCcCCCEEEEeCCcceEEcccc
Confidence 3799999999999999973 2335577778643 56999986 568999999999999999999999999999999999
Q ss_pred CcceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhhHHHH
Q psy2897 82 TLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMEL 161 (467)
Q Consensus 82 lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L~~~i 161 (467)
|||||+|++|+|||+++++....+||++.+||++++|.++++|++||||+||+|+|||||||++|||++|+|||+|+.++
T Consensus 103 lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l~PigrGQR~~Ifg~~g~GKT~Lal~~ 182 (502)
T 2qe7_A 103 LLGRVVNPLGQPLDGRGPIETAEYRPIESPAPGVMDRKSVHEPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTTIAIDT 182 (502)
T ss_dssp GTTCEECTTCCBSSCSCCCCCCCEEESSCCCCCTTSBCCCCSBCCCSCHHHHHSSCCBTTCBCEEEECSSSCHHHHHHHH
T ss_pred cceEEEccCCCCCCCCCCCCCCceeeccCCCCCcccccCCCCccccceeecccccccccCCEEEEECCCCCCchHHHHHH
Confidence 99999999999999999998888999999999999999999999999999999999999999999999999999996655
Q ss_pred HHHHHhhCCC-EEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q psy2897 162 INNIAKAHSG-LSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEG 240 (467)
Q Consensus 162 ~~~~~~~~~d-v~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g 240 (467)
+.|++ +.| +|||++||||++|+++|++++.+.++++ ||++|++|+|+||.+|++++|+|+++||||||+|
T Consensus 183 I~~~~--~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~-------~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G 253 (502)
T 2qe7_A 183 IINQK--GQDVICIYVAIGQKQSTVAGVVETLRQHDALD-------YTIVVTASASEPAPLLYLAPYAGCAMGEYFMYKG 253 (502)
T ss_dssp HHGGG--SCSEEEEEEEESCCHHHHHHHHHHHHHTTCST-------TEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHhh--cCCcEEEEEECCCcchHHHHHHHHHhhCCCcc-------eeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 55543 356 5899999999999999999999999987 9999999999999999999999999999999999
Q ss_pred CcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCC----CCCceeEEEEEEecCCCCCCCcccc
Q psy2897 241 KDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAST----KKGSITSIQAVYVPADDLTDPSPAT 316 (467)
Q Consensus 241 ~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~----~~GSiT~~~tv~~~~~d~~dpi~~~ 316 (467)
+|||+++||+||||+|+||+|+++||||+++||||++|+.+++|+||||+. ++||||++|+|++++||++||||++
T Consensus 254 ~dVLl~~Dsltr~A~A~REisl~lgepP~~~gYpg~vf~~~~rL~ERAg~~~~~~~~GSITal~~v~~~~dD~s~pI~~~ 333 (502)
T 2qe7_A 254 KHALVVYDDLSKQAAAYRELSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDEKGGGSLTALPFIETQAGDVSAYIPTN 333 (502)
T ss_dssp CEEEEEEECHHHHHHHHHHHHTTTTCCCCSTTSCTTHHHHHHHHHTSCCBBCTTTTCCEEEEEEEEECSTTCCSSHHHHH
T ss_pred CcEEEEEecHHHHHHHHHHHHHhcCCCCccCCCCchHHHHHHHHHHhhhcccccCCCcceeEEEEEEccCCCcccchhHH
Confidence 999999999999999999999999999999999999999999999999974 5799999999999999999999999
Q ss_pred cccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHH
Q psy2897 317 TFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLV 396 (467)
Q Consensus 317 ~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~~~~~~~ 396 (467)
+++|+||||+|||+||++||||||||+.|+||+| .....++|+++++++|++|++|+|+++++++ | +.++++++.++
T Consensus 334 ~~si~DgqI~Lsr~La~~g~~PAIdvl~S~SRv~-~~~~~~~~~~~a~~lr~~la~y~el~~~~~~-G-~~l~~~~~~~l 410 (502)
T 2qe7_A 334 VISITDGQIFLESDLFYSGVRPAVNVGISVSRVG-GAAQIKAMKKVAGTLRLDLAQYRELQAFAQF-G-SDLDKATQAKL 410 (502)
T ss_dssp HHTTSSEEEEECHHHHTTTCSSCBCTTTCEESSG-GGGSCHHHHHHHHHHHHHHHHHHHGGGSTTC-C-CCTTTTTTTTH
T ss_pred HhhhcCcEEEEehhHhhCCCCceeCcccccccCC-CccCCHHHHHHHHHHHHHHhhhHHHHHHHHh-c-cCCCHHHHHHH
Confidence 9999999999999999999999999999999999 5667899999999999999999999999775 7 46888999999
Q ss_pred HHHHHHHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhcCCCCCCchhhh
Q psy2897 397 ARARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISSGELDNIPEQAF 449 (467)
Q Consensus 397 ~~~~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~g~~d~~~~~~~ 449 (467)
+++++|++||+|+++ ++.++++++..++++..|++|++|.+..
T Consensus 411 ~~~~~i~~fL~Q~~~----------~~~~~~~~~~~l~~~~~g~l~~i~~~~i 453 (502)
T 2qe7_A 411 NRGERTVEILKQDEH----------KPMPVEEQVISIYAVTNGFMDDIPVEDV 453 (502)
T ss_dssp HHHHHHHHHHCCCTT----------CCCCHHHHHHHHHHHHTTTTTSSCSTTH
T ss_pred HHHHHHHHHhCCCCC----------CCCCHHHHHHHHHHHHhhhhcCCCHHHH
Confidence 999999999999988 7899999999999999999999997654
No 11
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=100.00 E-value=1.5e-109 Score=875.68 Aligned_cols=422 Identities=23% Similarity=0.315 Sum_probs=394.6
Q ss_pred CCceEEEEEcceEEEEecCCCcceeeeeeeeeCceEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecCCCC
Q psy2897 2 SDGKIIQCIGSVVDVEFPHNMVPKIYNALKIENSELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKA 81 (467)
Q Consensus 2 ~~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~~~~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpvg~~ 81 (467)
.+|+|++|.|+++++.|+. -..++++|++.++ ..+||+++ +++.+.+++|+++.||++|+.|++||++++||||++
T Consensus 28 ~~G~V~~v~g~iv~v~gl~--~~~~ge~~~i~~g-~~g~v~~l-~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvG~~ 103 (507)
T 1fx0_A 28 NTGTVLQVGDGIARIHGLD--EVMAGELVEFEEG-TIGIALNL-ESNNVGVVLMGDGLMIQEGSSVKATGRIAQIPVSEA 103 (507)
T ss_dssp TEEEECCCCSSEEEEEECT--TCCTTCCEEETTC-CEEEEEEE-CSSEEEEEECSCGGGCCTTCEEECCCCCCEEEESSS
T ss_pred EEEEEEEEeCCEEEEEECC--CccCCCEEEECCC-ceEEEEec-cCCeEEEEEecCccCCcCCCEEEEeCCcceeecCcc
Confidence 3699999999999999973 2335577778643 57999986 568999999999999999999999999999999999
Q ss_pred CcceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchhhHHHH
Q psy2897 82 TLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMEL 161 (467)
Q Consensus 82 lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L~~~i 161 (467)
|||||+|++|+|||+++++...++||++.+||++++|.++++|++||||+||+|+|||||||++|||++|+|||+|+.++
T Consensus 104 lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l~PigrGQR~~Ifg~~g~GKT~Lal~~ 183 (507)
T 1fx0_A 104 YLGRVINALAKPIDGRGEITASESRLIESPAPGIMSRRSVYEPLQTGLIAIDAMIPVGRGQRELIIGDRQTGKTAVATDT 183 (507)
T ss_dssp CSSCCCCSSSCCSSSSCCCCCSEEEESSCCCCCSSSBCCCCSBCCCSCTTTTTTSCCBTTCBCBEEESSSSSHHHHHHHH
T ss_pred ceeEEEccCCcCCCCCCCCCCCceeeccCCCCCcccccccCCcccccceecccccccccCCEEEEecCCCCCccHHHHHH
Confidence 99999999999999999998888999999999999999999999999999999999999999999999999999996655
Q ss_pred HHHHHhhCCC-EEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q psy2897 162 INNIAKAHSG-LSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEG 240 (467)
Q Consensus 162 ~~~~~~~~~d-v~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g 240 (467)
+.|++ + .| +|||++||||++|+++|++++.+.++++ ||++|++|+|+||.+|++++|+|+++||||||+|
T Consensus 184 I~~~~-~-~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~-------rtvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G 254 (507)
T 1fx0_A 184 ILNQQ-G-QNVICVYVAIGQKASSVAQVVTNFQERGAME-------YTIVVAETADSPATLQYLAPYTGAALAEYFMYRE 254 (507)
T ss_dssp HHTCC-T-TTCEEEEEEESCCHHHHHHHHHHTGGGTGGG-------SEEEEEECTTSCGGGTTHHHHHHHHHHHHHHHTT
T ss_pred HHHhh-c-CCcEEEEEEcCCCchHHHHHHHHHHhcCccc-------cceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 55443 2 45 6899999999999999999999999998 9999999999999999999999999999999999
Q ss_pred CcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCC----CCCceeEEEEEEecCCCCCCCcccc
Q psy2897 241 KDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAST----KKGSITSIQAVYVPADDLTDPSPAT 316 (467)
Q Consensus 241 ~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~----~~GSiT~~~tv~~~~~d~~dpi~~~ 316 (467)
+|||+++||+||||+|+||+|+++||||+++||||++|+.|++|+||||+. ++||||++|+|++++||++||||++
T Consensus 255 ~dVLli~Dsltr~A~A~REisl~lge~P~~~gYp~~vf~~~srLlERAg~~~~~~~~GSITal~~v~~~~~D~s~pI~~~ 334 (507)
T 1fx0_A 255 RHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSLLGEGSMTALPIVETQAGDVSAYIPTN 334 (507)
T ss_dssp CEEEEEEECHHHHHHHHHHHHHHTTCCCCGGGCCSCSSTTTTTTGGGCCBBCTTTTSCEEEECCEEECSTTCTTSHHHHH
T ss_pred CcEEEEEecHHHHHHHHHHHHHhcCCCCccccCCchHhhhhHHHHHhhhhccccCCCcceeeeeeeeccCCCcccchHHH
Confidence 999999999999999999999999999999999999999999999999985 5799999999999999999999999
Q ss_pred cccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHH
Q psy2897 317 TFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLV 396 (467)
Q Consensus 317 ~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~~~~~~~ 396 (467)
+++|+||||+|||+||++||||||||+.|+||++ .....++|+++++++|++|++|+|+++++++ | +.++++++.++
T Consensus 335 ~~si~DgqIvLsr~La~~g~yPAIdvl~S~SR~~-~~~~~~~~~~~a~~lr~~la~y~el~~~~~~-G-~~l~~~~~~~l 411 (507)
T 1fx0_A 335 VISITDGQIFLSADLFNAGIRPAINVGISVSRVG-SAAQIKAMKKVAGKLKLELAQFAELEAFAQF-A-SDLDKATQNQL 411 (507)
T ss_dssp HHTTSSCBCCCCSSSSSSSCSSCCCTTTCCCTTG-GGGSCHHHHHHHHHHHHHHHHHHHHTTTGGG-C-SSCCHHHHHHH
T ss_pred HHhhcCcEEEEehhHhhCCCCCccchhhhhcccc-ccCCCHHHHHHHHHHHHHHHhhhHHHHHHHh-c-cCCCHHHHHHH
Confidence 9999999999999999999999999999999999 5667899999999999999999999999775 7 47999999999
Q ss_pred HHHHHHHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhcCCCCCCchhhh
Q psy2897 397 ARARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISSGELDNIPEQAF 449 (467)
Q Consensus 397 ~~~~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~g~~d~~~~~~~ 449 (467)
+++++|++||+|+++ ++.+++|++..++++..|++|.+|.+..
T Consensus 412 ~~~~~i~~fL~Q~~~----------~~~~~~e~~~~l~~~~~g~l~~i~~~~i 454 (507)
T 1fx0_A 412 ARGQRLRELLKQPQS----------APLTVEEQVMTIYTGTNGYLDSLELDQV 454 (507)
T ss_dssp HHHHHHHHHHCCCTT----------CCCCHHHHHHHHHHHHTTSSSSSCHHHH
T ss_pred HHHHHHHHHHCCCCC----------CCCCHHHHHHHHHHHhhchhcCCCHHHH
Confidence 999999999999988 7899999999999999999999996544
No 12
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=100.00 E-value=5.9e-106 Score=854.10 Aligned_cols=418 Identities=25% Similarity=0.365 Sum_probs=379.6
Q ss_pred CCCceEEEEEcceEEEEecCCCcceeeeeeeeeCceEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecCCC
Q psy2897 1 MSDGKIIQCIGSVVDVEFPHNMVPKIYNALKIENSELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVGK 80 (467)
Q Consensus 1 ~~~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~~~~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpvg~ 80 (467)
|+.|+|++|.|++++|+|+. .+.++++|++.+..+.+||+++.+ +.+.+++|+++.||++|+.|++||++++||||+
T Consensus 8 m~~G~V~~V~G~vv~v~g~~--~~~~gE~v~v~~~~l~gEVi~~~~-d~a~i~v~e~t~Gl~~G~~V~~tG~~lsV~vG~ 84 (600)
T 3vr4_A 8 MQIGKIIKVSGPLVMAENMS--EASIQDMCLVGDLGVIGEIIEMRQ-DVASIQVYEETSGIGPGEPVRSTGEALSVELGP 84 (600)
T ss_dssp CCCEEEEEEETTEEEEESCT--TSCTTCEEEETTTTEEEEEEEEET-TEEEEEESSCCTTCCTTCEEEECSSSSEEEEST
T ss_pred CcceEEEEEECcEEEEEcCC--CCccCCEEEECCCcEEEEEEEEcC-CcEEEEEccCCCCCCCCCEEEECCCCCEEEeCH
Confidence 78999999999999999975 355778888976679999999875 788999999999999999999999999999999
Q ss_pred CCcceEEEeecCcCCCC----C-----------Cccc-------------------------------------------
Q psy2897 81 ATLGRIINVLGDPIDEK----G-----------NISN------------------------------------------- 102 (467)
Q Consensus 81 ~lLGRVld~lG~PiDg~----~-----------~~~~------------------------------------------- 102 (467)
+|||||+|++|+|||+. + ++..
T Consensus 85 ~lLGrV~DglGrPlD~~~~~~g~~~~~~g~~~~~l~~~~~w~f~p~~~~Gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g 164 (600)
T 3vr4_A 85 GIISQMFDGIQRPLDTFMEVTQSNFLGRGVQLPALDHEKQWWFEATIEEGTEVSAGDIIGYVDETKIIQHKIMVPNGIKG 164 (600)
T ss_dssp TCTTCEECTTCCBHHHHHHHHCSSBCCTTCCCCSSCSSCCEEEEECSCTTCEECTTCEEEEEECSSSCEEEEECCTTCCE
T ss_pred HHHhhhhCcCCCcccccccccCccccccCCcCCCCCcccccccCcccccCCEecCCceEEEEecCCceeeeeecCCCCCc
Confidence 99999999999999986 3 1111
Q ss_pred ------------------------------ccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCC
Q psy2897 103 ------------------------------KYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGV 152 (467)
Q Consensus 103 ------------------------------~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~ 152 (467)
.++||++. ||++.+|.++++||.||||+||+|+|||||||++|||++|+
T Consensus 165 ~v~~i~~g~~~v~~~v~~i~~~~g~~~i~~~~~wpv~~-~~p~~~R~~~~epl~TGirvID~l~PigrGqr~~Ifgg~g~ 243 (600)
T 3vr4_A 165 TVQKIESGSFTIDDPICVIETEQGLKELTMMQKWPVRR-GRPIKQKLNPDVPMITGQRVIDTFFPVTKGGAAAVPGPFGA 243 (600)
T ss_dssp EEEEECCEEECTTSCCEEEEETTEEEEECSCEEEETTS-CCCCSEEECCCSBCCCCCHHHHHHSCCBTTCEEEEECCTTS
T ss_pred eEEEecCCcceeceeEEEEeccCCcccccccccccccC-CCchhhccCCCceecccchhhhccCCccCCCEEeeecCCCc
Confidence 12355544 45567899999999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHh-------hcccCCCCCCCceEEEEEeCCCCCHHHHHHH
Q psy2897 153 GKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIE-------AKVVNLDKPEKSKVSMVYGQMNEPSGNRLRV 225 (467)
Q Consensus 153 GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~-------~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~ 225 (467)
|||+|+++|+++. +.+++||++||||++|++||++++++ .++++ |+++|++|+|+||.+|+++
T Consensus 244 GKT~L~~~ia~~~---~~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~m~-------rtvvV~~tsd~p~~~R~~~ 313 (600)
T 3vr4_A 244 GKTVVQHQIAKWS---DVDLVVYVGCGERGNEMTDVVNEFPELIDPNTGESLME-------RTVLIANTSNMPVAAREAS 313 (600)
T ss_dssp CHHHHHHHHHHHS---SCSEEEEEEEEECHHHHHHHHHHTTTCBCTTTCSBGGG-------GEEEEEEETTSCHHHHHHH
T ss_pred cHHHHHHHHHhcc---CCCEEEEEEecccHHHHHHHHHHHHhhccccccccccc-------ceEEEEECCCCCHHHHHHH
Confidence 9999999998863 45899999999999999999999875 34565 9999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcC-------CCCCceeE
Q psy2897 226 ALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAS-------TKKGSITS 298 (467)
Q Consensus 226 ~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~-------~~~GSiT~ 298 (467)
+|+|+|+||||||+|+|||+++||+||||+|+||||+++||||+++||||++|++|++||||||+ .++||||+
T Consensus 314 ~~~altiAEyfrd~G~dVLl~~Ds~tR~A~A~rEiS~~lge~P~~~GYp~~l~s~L~~l~ERAg~~~~~~~~~~~GSIT~ 393 (600)
T 3vr4_A 314 IYTGITIAEYFRDMGYDVAIMADSTSRWAEALREMSGRLEEMPGDEGYPAYLGSRLAEYYERSGRVIALGSDQREGSITA 393 (600)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHHTTCCBCGGGCBTTHHHHHHHHHTTSEEEECSSTTCCEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEecchHHHHHHHHHHHhccCCCCccccCCchhhhHHHHHHHhhccccccCCCCCCcceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999985 36899999
Q ss_pred EEEEEecCCCCCCCcccccccccceEEEeehhhhhcCCCCcccCCCCCcCCcCC------ccccHHHHHHHHHHHHHHHH
Q psy2897 299 IQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDP------LIVGKKHYKIARLVQSTLQR 372 (467)
Q Consensus 299 ~~tv~~~~~d~~dpi~~~~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~------~~~~~~~~~~a~~~r~~la~ 372 (467)
+++|++|+||++||||+++++|+||||+|||+||++||||||||+.|+||+|+. .+++++|.+++++++++|++
T Consensus 394 i~~v~~~gdD~tdPi~~~t~~i~dg~ivLsr~La~~giyPAId~l~S~SR~~~~l~~~~~~~~~~~h~~~a~~~~~~la~ 473 (600)
T 3vr4_A 394 ISAVSPSGGDISEPVTQNTLRVVKVFWGLDSSLAQKRHFPSINWIQSYSLYSTEVGRYMDQILQQDWSDMVTEGMRILQE 473 (600)
T ss_dssp EEEECCSSSCTTSHHHHHHHTTCCEECCBCHHHHTTTCSSCBCTTTCEETTHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCcchhhhhhhccEEEEEhhhHHhCCCCCccCcccchhhhcccccccccccCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999852 34689999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH-HHhcCCCcccceeccCCCeeecHHHHHHHHHHhhc
Q psy2897 373 YKELRDIISILGMDELSPEDKLLVARARKMQ-RFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISS 438 (467)
Q Consensus 373 ~~~~~~~i~~~g~~~~~~~~~~~~~~~~~i~-~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~ 438 (467)
|+++++|++++|.++++++|+..++++++|+ +||+|++|.. .+.++++++++..|..|+.
T Consensus 474 ~~el~~ii~i~G~d~Ls~~dk~~l~~a~~i~e~fL~Q~~f~~------~d~~~~~~kq~~~l~~i~~ 534 (600)
T 3vr4_A 474 EEQLNEIVRLVGIDSLSDNDRLTLEVAKSIREDYLQQNAFDD------VDTFTSREKQFNMLKVILT 534 (600)
T ss_dssp HHHHHHHHHHTCGGGSCHHHHHHHHHHHHHHHHTTCCCTTST------TTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCccCCHHHHHHHHHHHHHHHHhCCCCCcCC------ccccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999997 7999995521 2367799999988877743
No 13
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=100.00 E-value=6e-106 Score=851.01 Aligned_cols=417 Identities=25% Similarity=0.377 Sum_probs=379.4
Q ss_pred CCCceEEEEEcceEEEEecCCCcceeeeeeeeeCceEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecCCC
Q psy2897 1 MSDGKIIQCIGSVVDVEFPHNMVPKIYNALKIENSELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVGK 80 (467)
Q Consensus 1 ~~~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~~~~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpvg~ 80 (467)
|+.|+|++|+|++++|+|+. .+.++++|++.++++.+||+++.+ +.+.+++|+++.||++|+.|++||++++||||+
T Consensus 1 ~~~G~V~~V~G~vv~v~g~~--~~~~gE~v~v~~~~l~gEVi~~~~-d~~~i~v~e~t~Gl~~G~~V~~tg~~l~V~vG~ 77 (578)
T 3gqb_A 1 MIQGVIQKIAGPAVIAKGML--GARMYDISKVGEEGLVGEIIRLDG-DTAFVQVYEDTSGLKVGEPVVSTGLPLAVELGP 77 (578)
T ss_dssp CCEEEEEEEETTEEEEESCT--TCCTTEEEEETTTTEEEEEEEEET-TEEEEEESSCCTTCCTTCEEEEEEEESEEEEST
T ss_pred CCeeEEEEEECCEEEEEcCC--CCccCCEEEECCCcEEEEEEEEcC-CcEEEEEcCCCCCCCCCCEEEECCCCCEEEeCH
Confidence 78999999999999999975 355778888976679999999875 788899999999999999999999999999999
Q ss_pred CCcceEEEeecCcCCCC----CC----------ccc--------------------------------------------
Q psy2897 81 ATLGRIINVLGDPIDEK----GN----------ISN-------------------------------------------- 102 (467)
Q Consensus 81 ~lLGRVld~lG~PiDg~----~~----------~~~-------------------------------------------- 102 (467)
+|||||+|++|+|||+. ++ +..
T Consensus 78 ~lLGrV~DglG~PlD~~~~~~g~~~~~g~~~~~l~~~~~w~f~p~~~~g~~v~~G~i~g~v~e~~~ih~i~~pp~~~g~v 157 (578)
T 3gqb_A 78 GMLNGIYDGIQRPLERIREKTGIYITRGVVVHALDREKKWAWTPMVKPGDEVRGGMVLGTVPEFGFTHKILVPPDVRGRV 157 (578)
T ss_dssp TCTTCEECTTSCBHHHHHHHHCSBCCTTCCCCSSCSSSCEEEEECCCTTCEECTTCEEEEEEETTEEEEEECCTTCCEEE
T ss_pred HHhhhhhCcCCCcccccccccCccccccccCCCcCcccccccccccccCccccccceeeeecccccceecccCCCcCcee
Confidence 99999999999999987 21 111
Q ss_pred --------------------------ccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCCchh
Q psy2897 103 --------------------------KYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTV 156 (467)
Q Consensus 103 --------------------------~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~ 156 (467)
.++||++.+ |++.+|.++++||.||||+||+|+|||||||++|||++|+|||+
T Consensus 158 ~~i~~~G~~~v~~~i~~~~~g~~i~~~~~wPv~~~-~p~~~R~~~~epl~TGirvID~l~PigrGqr~~Ifg~~g~GKT~ 236 (578)
T 3gqb_A 158 KEVKPAGEYTVEEPVVVLEDGTELKMYHTWPVRRA-RPVQRKLDPNTPFLTGMRILDVLFPVAMGGTAAIPGPFGSGKSV 236 (578)
T ss_dssp EEECCSEEECTTSCSEEETTCCEECSCEEEETTSC-CCCSEEECSCSEECCSCHHHHTTSCEETTCEEEECCCTTSCHHH
T ss_pred EEeccCCcccccceeEEeecCccccccccccccCC-CChHHhccCCCcccccchhhhhcccccCCCEEeeeCCCCccHHH
Confidence 123555543 55678999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHh-------hcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHH
Q psy2897 157 NMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIE-------AKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTG 229 (467)
Q Consensus 157 L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~-------~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a 229 (467)
|+++|+++. +.+++||++||||++|++||++++++ .++++ |+++|++|+|+||.+|++++|+|
T Consensus 237 l~~~ia~~~---~~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~~~-------rtvvv~~tsd~p~~~R~~~~~~a 306 (578)
T 3gqb_A 237 TQQSLAKWS---NADVVVYVGSGERGNEMTDVLVEFPELTDPKTGGPLMH-------RTVLIANTSNMPVAAREASIYVG 306 (578)
T ss_dssp HHHHHHHHS---SCSEEEEEEEEECHHHHHHHHTTGGGCBCTTTSSBSGG-------GEEEEEEETTSCHHHHHHHHHHH
T ss_pred HHHHHHhcc---CCCEEEEEEecccHHHHHHHHHHHHhhccccccccccc-------ceEEEEECCCCCHHHHHHHHHHH
Confidence 999998863 45899999999999999999999876 33455 99999999999999999999999
Q ss_pred HHHHHHHHHCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcC-----CCCCceeEEEEEEe
Q psy2897 230 LTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAS-----TKKGSITSIQAVYV 304 (467)
Q Consensus 230 ~~~AE~fr~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~-----~~~GSiT~~~tv~~ 304 (467)
+|+||||||+|+|||+++||+||||+|+||+|+++||||+++||||++|++|++||||||+ .++||||++++|++
T Consensus 307 ltiAEyfrd~G~dVLl~~Ds~tR~A~A~rEis~~lge~P~~~GYp~~l~s~l~~l~ERAg~~~~~~~~~GSIT~i~~v~~ 386 (578)
T 3gqb_A 307 VTIAEYFRDQGFSVALMADSTSRWAEALREISSRLEEMPAEEGYPPYLAARLAAFYERAGKVITLGGEEGAVTIVGAVSP 386 (578)
T ss_dssp HHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHHTTCCCCSSSSCTTHHHHHHHHHTTCEEEECTTSCEEEEEEEEECCC
T ss_pred HHHHHHHHHcCCCEEEEecChHHHHHHHHHHHHhccCCCccccCCchhhhHHHHHHHhhcCcccCCCCCcceEEEEEEEc
Confidence 9999999999999999999999999999999999999999999999999999999999986 36899999999999
Q ss_pred cCCCCCCCcccccccccceEEEeehhhhhcCCCCcccCCCCCcCCcCC------ccccHHHHHHHHHHHHHHHHHHHHHH
Q psy2897 305 PADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDP------LIVGKKHYKIARLVQSTLQRYKELRD 378 (467)
Q Consensus 305 ~~~d~~dpi~~~~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~------~~~~~~~~~~a~~~r~~la~~~~~~~ 378 (467)
|+||++||||+++++|+||||+|||+||++||||||||+.|+||+++. .+++++|.+++++++++|++|+++++
T Consensus 387 ~gdD~tdPi~~~t~~i~dg~ivLsr~La~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~h~~~a~~~~~~l~~~~el~~ 466 (578)
T 3gqb_A 387 PGGDMSEPVTQSTLRIVGAFWRLDASLAFRRHFPAINWNGSYSLFTSALDPWYRENVAEDYPELRDAISELLQREAGLQE 466 (578)
T ss_dssp TTTCTTSHHHHHHHTTCSEECCBCHHHHHHTCSSCBCTTTCEESSHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHTTTT
T ss_pred CCCCCCCcchHHHhhhcCceEEECHHHHhCCCCCCcCcccchhhccccccccccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999852 35789999999999999999999999
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHH-HHhcCCCcccceeccCCCeeecHHHHHHHHHHhh
Q psy2897 379 IISILGMDELSPEDKLLVARARKMQ-RFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLIS 437 (467)
Q Consensus 379 ~i~~~g~~~~~~~~~~~~~~~~~i~-~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~ 437 (467)
|++++|.++++++|+..++++++++ +||+|++|.. .+.++++++++..|..|+
T Consensus 467 ii~i~G~d~Ls~~dk~~l~~a~~i~~~fL~Q~~f~~------~d~~~~~~kq~~~l~~i~ 520 (578)
T 3gqb_A 467 IVQLVGPDALQDAERLVIEVGRIIREDFLQQNAYHE------VDAYSSMKKAYGIMKMIL 520 (578)
T ss_dssp TTTTTTGGGCCHHHHHHHHHHHHHHHHHTCCCSSST------TTTCCCHHHHHHHHHHHH
T ss_pred HHHhcCCccCCHHHHHHHHHHHHHHHHhCCCCCCCC------ceecCCHHHHHHHHHHHH
Confidence 9999999999999999999999997 6999996521 236789999998887773
No 14
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=100.00 E-value=1.6e-105 Score=847.85 Aligned_cols=415 Identities=26% Similarity=0.373 Sum_probs=313.0
Q ss_pred CceEEEEEcceEEEEecCCCcceeeeeeeeeCceEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCCceeecCCCCC
Q psy2897 3 DGKIIQCIGSVVDVEFPHNMVPKIYNALKIENSELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKAT 82 (467)
Q Consensus 3 ~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~~~~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~~~~vpvg~~l 82 (467)
.|+|++|.|++++|.|+. -..++++|++++.++.+||+++. ++.+.+++|+++.||++|+.|++||++++|++|++|
T Consensus 4 ~G~V~~V~G~iv~~~g~~--~~~~gElv~v~~~~l~geVi~l~-~d~~~i~v~e~t~Gi~~G~~V~~tg~~lsV~vG~gL 80 (588)
T 3mfy_A 4 KGRIIRVTGPLVVADGMK--GAKMYEVVRVGELGLIGEIIRLE-GDKAVIQVYEETAGVRPGEPVVGTGASLSVELGPRL 80 (588)
T ss_dssp ------------------------------------------------------------CCCCCSSSSSCCEEEESTTC
T ss_pred eeEEEEEECCEEEEEcCC--CCccCCEEEEcCCceEEEEEEec-CCeEEEEEccCCCCCCCCCEEEEcCCCCEEEeCHHH
Confidence 799999999999999965 24577888887567999999975 578999999999999999999999999999999999
Q ss_pred cceEEEeecCcCCCCCCc--------------c-----------------------------------------------
Q psy2897 83 LGRIINVLGDPIDEKGNI--------------S----------------------------------------------- 101 (467)
Q Consensus 83 LGRVld~lG~PiDg~~~~--------------~----------------------------------------------- 101 (467)
||||+|++|+|||+.+++ .
T Consensus 81 LGrV~DglgrPLd~~~~~~g~~~~~g~~~~~l~~~~~w~f~p~~~~gd~v~~G~i~g~v~e~~~~~~~imvpp~~~g~v~ 160 (588)
T 3mfy_A 81 LTSIYDGIQRPLEVIREKTGDFIARGVTAPALPRDKKWHFIPKAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIV 160 (588)
T ss_dssp TTCEEETTCCSSSSCCCCCSSSCCCCCCCCSSCSSCCEEEEECCCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEE
T ss_pred HhhccCCCCCcccCcccccccccccccccCccccccccccccccccCcccccCceEEEEecccceeeeeecCCCCCceEE
Confidence 999999999999987431 0
Q ss_pred ----------------------------cccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCCCC
Q psy2897 102 ----------------------------NKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVG 153 (467)
Q Consensus 102 ----------------------------~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g~G 153 (467)
..++||++.+ +++++|.++++||.||||+||+|+|||||||++|||++|+|
T Consensus 161 ~i~~~g~~~v~~~i~~i~~~~g~~~~i~~~~~wpv~~~-~p~~~R~~~~epl~TGirvID~l~PigkGqr~~I~g~~g~G 239 (588)
T 3mfy_A 161 EIAEEGDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVK-RPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPAGSG 239 (588)
T ss_dssp EECCSEEECTTSEEEEEECTTCCEEEEESCEEEETTSC-CCCSEEECSCSEECCSCHHHHHHSCEETTCEEEECSCCSHH
T ss_pred EeccCCcccccceEEEEecCCCccccccccccccccCC-CchhhhccCCcccccCcchhhccCCcccCCeEEeecCCCCC
Confidence 0123566543 45578999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHh-------hcccCCCCCCCceEEEEEeCCCCCHHHHHHHH
Q psy2897 154 KTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIE-------AKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVA 226 (467)
Q Consensus 154 Kt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~-------~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~ 226 (467)
||+|+++|+++. +.+++||++||||++|++||++++.+ .++++ ||++|++|+|+||.+|++++
T Consensus 240 KT~L~~~ia~~~---~~~~~V~~~iGER~~Ev~e~~~~~~el~d~~~g~~~m~-------rtvvV~~tsd~p~~~r~~~~ 309 (588)
T 3mfy_A 240 KTVTQHQLAKWS---DAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLME-------RTVLIANTSNMPVAAREASI 309 (588)
T ss_dssp HHHHHHHHHHHS---SCSEEEEEECCSSSSHHHHHHHHTTTCEETTTTEEGGG-------GEEEEECCTTSCHHHHHHHH
T ss_pred HHHHHHHHHhcc---CCCEEEEEEecccHHHHHHHHHHHHHhccccccccccc-------ceEEEEECCCCCHHHHHHHH
Confidence 999999998752 45899999999999999999999876 44565 99999999999999999999
Q ss_pred HHHHHHHHHHHHCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcC-------CCCCceeEE
Q psy2897 227 LTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAS-------TKKGSITSI 299 (467)
Q Consensus 227 ~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~-------~~~GSiT~~ 299 (467)
|+|+|+||||||+|+|||+++||+||||+|+||||+++||||+++||||++|++|++||||||+ .++||||++
T Consensus 310 ~~a~tiAEyfrd~G~dVLl~~DsltR~A~A~rEis~~lge~P~~~GYp~~l~s~L~~l~ERAg~~~~~~~~~~~GSIT~i 389 (588)
T 3mfy_A 310 YTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVI 389 (588)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECTTTCCCCC----------------CCHHHHHHHHHHTTCEEEECSSSSCCEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEeecchHHHHHHHHHHHHhccCCCccccCCchhhhhhhHHHhccccccccCCCCCCcceEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999985 358999999
Q ss_pred EEEEecCCCCCCCcccccccccceEEEeehhhhhcCCCCcccCCCCCcCCcCC------ccccHHHHHHHHHHHHHHHHH
Q psy2897 300 QAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDP------LIVGKKHYKIARLVQSTLQRY 373 (467)
Q Consensus 300 ~tv~~~~~d~~dpi~~~~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~------~~~~~~~~~~a~~~r~~la~~ 373 (467)
++|++++||++||||+++++|+||||+|||+||++||||||||+.|+||+++. .+++++|.+++++++++|++|
T Consensus 390 ~~v~~~gdD~sdpi~~~~~~i~dg~i~Lsr~La~~g~yPAId~l~S~SR~~~~i~~~~~~~~~~~h~~~a~~~~~~La~~ 469 (588)
T 3mfy_A 390 GAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMRDKAMALLQKE 469 (588)
T ss_dssp EECCCTTSCSSCSHHHHHHHHCSEECCBCHHHHHTTCSSCBCTTTCEETTHHHHHHHHHHHTCTTHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCcchHHHHHhccCeeecCHHHHhCCCCCCcCcccchhhhcccccchhhccCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999953 346899999999999999999
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHH-HHhcCCCcccceeccCCCeeecHHHHHHHHHHhh
Q psy2897 374 KELRDIISILGMDELSPEDKLLVARARKMQ-RFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLIS 437 (467)
Q Consensus 374 ~~~~~~i~~~g~~~~~~~~~~~~~~~~~i~-~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~ 437 (467)
+++++|++++|.++++++|+..++++++|+ +||+|++|.. .+.++++++++..|..|+
T Consensus 470 ~el~~ii~i~G~d~Ls~~dk~~l~~ar~i~e~fL~Q~~f~~------~d~~~~~~k~~~~l~~i~ 528 (588)
T 3mfy_A 470 SELQEIVRIVGPDALPERERAILLVARMLREDYLQQDAFDE------VDTYCPPEKQVTMMRVLL 528 (588)
T ss_dssp HHHHHHHHHHCSTTCCHHHHHHHHHHHHHHHHTTCCCTTST------TTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCccCCHHHHHHHHHHHHHHHHhcCCCCCCC------CccCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999997 7999997742 357889999998887774
No 15
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=100.00 E-value=1.6e-78 Score=619.51 Aligned_cols=315 Identities=20% Similarity=0.229 Sum_probs=281.9
Q ss_pred cCCCCCceEEecCCceeecCCCCCcceEEEeecCcCCCCCCcccccccCCCCCCC-Ccccccccc-ccccccceeeeccc
Q psy2897 59 EGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPP-SYEELSSSQ-ELLETGIKVIDLIC 136 (467)
Q Consensus 59 ~Gl~~G~~V~~tg~~~~vpvg~~lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p-~~~~R~~~~-~~l~TGIr~ID~l~ 136 (467)
.||+.||.|....++.+-.---.-|+||.+..|++.+. ...+..+...+| +|.+|..++ +++.||+|+||+|+
T Consensus 96 ~~lr~gd~v~g~~r~~~~~e~~~~l~~v~~vng~~p~~-----~~~r~~fe~l~Pi~P~~R~~le~e~~~tGiraID~l~ 170 (427)
T 3l0o_A 96 FNLNTGDIISGVIRKPKEGEKYFAMIKIEAINYRPVEA-----VNDRVNFDNLTPDYPRERFILETDPKIYSTRLIDLFA 170 (427)
T ss_dssp TTCCTTCEEEEEEECCCSSSCSEEEEEEEEETTEEC---------CCCCGGGSCEECCCSBCCCCCSTTCHHHHHHHHHS
T ss_pred cCCCCCCEEEEEEeCCCCCcccccceEEEecCCCChHH-----hccccccccCCCCCchhhccccccchhccchhhhhcc
Confidence 39999999999887766432223467888777766553 344555666555 789999998 99999999999999
Q ss_pred ccccCceeeeecCCCCCchhhHHHHHHHHHhhCCCE-EEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCC
Q psy2897 137 PFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGL-SVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQM 215 (467)
Q Consensus 137 pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv-~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~ 215 (467)
|||||||++|||++|+|||+|+.+|+++.+++++++ |||++||||++|+++|++.+ +.+||++|+
T Consensus 171 PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGER~~EV~d~~~~~--------------~G~VV~ata 236 (427)
T 3l0o_A 171 PIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDERPEEVTDIREST--------------NAIVIAAPF 236 (427)
T ss_dssp CCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECSCCHHHHSSSSSSC--------------CSEEEECCT
T ss_pred cccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEeccCcchHHHHHHHh--------------CCeEEEECC
Confidence 999999999999999999999999999988877775 79999999999999998888 348999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcC-CCCC
Q psy2897 216 NEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAS-TKKG 294 (467)
Q Consensus 216 d~~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~-~~~G 294 (467)
|+||.+|++++++|+++|||||++|+|||+++||+||||+|+||+++++||+|+ +||||++|+.+++++|||++ +++|
T Consensus 237 dep~~~r~~~a~~altiAEyfrd~G~dVLil~DslTR~A~A~rEvs~~~Ge~~s-~Gypp~~~~~~~~~~erA~~ie~~G 315 (427)
T 3l0o_A 237 DMPPDKQVKVAELTLEMAKRLVEFNYDVVILLDSLTRLARVYNIVVPPSGKLLT-GGVDPAALYKPKRFFGAARNTREGG 315 (427)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECHHHHHHHHHHHSCCCSCCCS-SSCCSSCSHHHHHHHHTCEEESSSC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEecccchHHHHHHHHHHHhcCCCCC-CCcCchhhcchHHHHHhhcccCCCc
Confidence 999999999999999999999999999999999999999999999999999999 59999999999999999997 5799
Q ss_pred ceeEEEEEEec-CCCCCCCcccccccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHH
Q psy2897 295 SITSIQAVYVP-ADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRY 373 (467)
Q Consensus 295 SiT~~~tv~~~-~~d~~dpi~~~~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~ 373 (467)
|||+|+||+++ +||++|||+|++++|+||||+|||+||++||||||||+.|+||++ +.+++++|+++++++|++|++|
T Consensus 316 SIT~i~tvlvetgdd~~dpI~d~~~~i~dg~IvLsR~La~~giyPAIDvl~S~SR~~-~~l~~~~h~~~a~~lr~~la~y 394 (427)
T 3l0o_A 316 SLTIIATALVETGSKMDEVIFEEFKGTGNMELVLSRQLANKRIFPAINLLLSGTRRE-ELLLDEETLKKVWLLRRMLSAM 394 (427)
T ss_dssp EEEEEEEEECSSSCSHHHHHHHHTTTCCSEEEEBCHHHHTTTCSSCBCSTTCEETTG-GGTSCHHHHHHHHHHHHHHTTS
T ss_pred ceeEEEEEEecCCCCcCCcchHHhcccCCceEEEeHHHHhCCCCCccCccccccccc-cccCCHHHHHHHHHHHHHHHhc
Confidence 99999999999 899999999999999999999999999999999999999999998 7889999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCHHHHH
Q psy2897 374 KELRDIISILGMDELSPEDKL 394 (467)
Q Consensus 374 ~~~~~~i~~~g~~~~~~~~~~ 394 (467)
++++++..+.+.-..++.+.+
T Consensus 395 ~e~e~l~~ll~~~~~t~~n~~ 415 (427)
T 3l0o_A 395 TEEEGLTLILNKLSETSSNEE 415 (427)
T ss_dssp CHHHHHHHHHHHHHTCSSHHH
T ss_pred chHHHHHHHHHHHhcCCCHHH
Confidence 999999998876555554443
No 16
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=100.00 E-value=2.9e-73 Score=597.99 Aligned_cols=412 Identities=27% Similarity=0.411 Sum_probs=379.4
Q ss_pred CCceEEEEEcceEEEEecCCCcceeeeeeeeeC---c---eEEEEEEEEecCcEEEEEEcCCCcCCCCCceEEecCC---
Q psy2897 2 SDGKIIQCIGSVVDVEFPHNMVPKIYNALKIEN---S---ELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGK--- 72 (467)
Q Consensus 2 ~~GrV~~V~G~vi~a~g~~~~~~~i~~~v~i~~---~---~~~~EVv~~~~~~~v~l~~l~~~~Gl~~G~~V~~tg~--- 72 (467)
.+|+|++|.|+++++.|+. +.++++|++.. . .+.+||+++ +++.+.+++|+++.||++|+.|.+|++
T Consensus 9 ~~g~v~~v~g~~~~~~~~~---~~~~e~~~~~~~~~~~~~~~~~ev~~~-~~~~~~~~~~~~~~gl~~g~~v~~~~~~~~ 84 (438)
T 2dpy_A 9 RYGRLTRATGLVLEATGLQ---LPLGATCIIERQDGPETKEVESEVVGF-NGQRLFLMPLEEVEGILPGARVYARNGHGD 84 (438)
T ss_dssp CCEEEEECSSSSEEEESCC---CCSSCEEEEEECSTTSCEEEEEEEEEC-CTTCEEEEESSCCTTCCTTEEEEEC-----
T ss_pred eeeEEEEEECcEEEEEeCC---CCCCCEEEEecCCCCccccEEEEEEEE-cCCEEEEEEccCCCCCCCCCEEEECCCccc
Confidence 3799999999999999985 44667777752 3 588999995 678999999999999999999999999
Q ss_pred ----ceeecCCCCCcceEEEeecCcCCCCCCcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeec
Q psy2897 73 ----PIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFG 148 (467)
Q Consensus 73 ----~~~vpvg~~lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g 148 (467)
++++|+|+++||||+|++|+|+|+.+++....+||++.++|++.++..+++++.||+++||.++|+++||+++|+|
T Consensus 85 ~~~~~~~v~~g~~~lgrv~~~lg~p~d~~~~~~~~~~~~i~~~~~~~l~~~~v~~~~~tg~~vld~vl~i~~Gq~~~IvG 164 (438)
T 2dpy_A 85 GLQSGKQLPLGPALLGRVLDGGGKPLDGLPAPDTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFA 164 (438)
T ss_dssp -----CEEECSGGGTTEEECTTCCBSSSSCCCCCSCEEESCCCCCCTTTSCCCCSBCCCSCHHHHHHSCCBTTCEEEEEE
T ss_pred cccccEEEEcchhhhhhhhhccCCccCCCCCccccccccccCCCCCceEEeccceecCCCceEEeeeEEecCCCEEEEEC
Confidence 9999999999999999999999999888777788999988999999999999999999999999999999999999
Q ss_pred CCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHH
Q psy2897 149 GAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALT 228 (467)
Q Consensus 149 ~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~ 228 (467)
++|+|||||+.+|+... .++..++.++|+|++|++++.+...+.+.+. +++.++.++++|+..++.+++.
T Consensus 165 ~sGsGKSTLl~~Iag~~---~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~-------r~i~~v~q~~~~~~~~~~v~~~ 234 (438)
T 2dpy_A 165 GSGVGKSVLLGMMARYT---RADVIVVGLIGERGREVKDFIENILGPDGRA-------RSVVIAAPADVSPLLRMQGAAY 234 (438)
T ss_dssp CTTSSHHHHHHHHHHHS---CCSEEEEEEESCCHHHHHHHHHTTTHHHHHH-------TEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhccc---CCCeEEEEEeceecHHHHHHHHhhccccccC-------ceEEEEECCCCCHHHHHHHHHH
Confidence 99999999999998863 3578899999999999999987654444454 8899999999999999999999
Q ss_pred HHHHHHHHHHCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCC--CCCceeEEEEEEecC
Q psy2897 229 GLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAST--KKGSITSIQAVYVPA 306 (467)
Q Consensus 229 a~~~AE~fr~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~--~~GSiT~~~tv~~~~ 306 (467)
+++.||||++++++|+.++|+++||+.++|++++++++||...||+|+.+..+.+++||+++. ++||||+++||++.+
T Consensus 235 ~~~~ae~~~~~~~~v~~~ld~l~~lS~g~qrvslAl~~p~~t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~t 314 (438)
T 2dpy_A 235 ATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEG 314 (438)
T ss_dssp HHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHHTTCCCCSSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSS
T ss_pred HHHHHHHHHhCCCCHHHHHHhHHHHHHHHHHHHHHhCCCcccccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeC
Confidence 999999999999999999999999999999999999999999999999999999999999875 469999999999999
Q ss_pred CCCCCCcccccccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy2897 307 DDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMD 386 (467)
Q Consensus 307 ~d~~dpi~~~~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~ 386 (467)
+|+++|++|+++.+.||||++++.+++.++||||||+.|+||.+ ..+.+++|+++++++|++|++|++++++++++||+
T Consensus 315 Hdl~~~iad~v~~l~dG~Ivl~~~~~~~~~~Paidv~~s~sR~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 393 (438)
T 2dpy_A 315 DDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAM-TALITEQHYARVRLFKQLLSSFQRNRDLVSVGAYA 393 (438)
T ss_dssp SCSCCHHHHHHHHHSSEEEEECHHHHHTTCSSCEEEEEEEETTH-HHHSCHHHHHHHHHHHHHHHHHHHGGGTSSSSCCC
T ss_pred CCccchhhceEEEEeCcEEEEeCCHHHccCCCCcCCcccccccc-cccCCHHHHHHHHHHHHHHHhhHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999998 56789999999999999999999999999999999
Q ss_pred CCCHHH-HHHHHHHHHHHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhc
Q psy2897 387 ELSPED-KLLVARARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISS 438 (467)
Q Consensus 387 ~~~~~~-~~~~~~~~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~ 438 (467)
+++|++ ++++.++++|++||+|+++ +++++++|+..|++|+.
T Consensus 394 ~~~d~~~~~~i~~~~~~~~fl~Q~~~----------~~~~~~~~~~~~~~~~~ 436 (438)
T 2dpy_A 394 KGSDPMLDKAITLWPQLEAFLQQGIF----------ERADWEDSLQALDLIFP 436 (438)
T ss_dssp TTSCHHHHHHHTTHHHHHHHHCCCTT----------CCCCHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCC----------CCCCHHHHHHHHHHHHh
Confidence 998854 8899999999999999987 89999999999999976
No 17
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=100.00 E-value=1.4e-74 Score=591.55 Aligned_cols=310 Identities=18% Similarity=0.244 Sum_probs=271.2
Q ss_pred CCCCCceEEecCCceeecCCCCCcceEEEeecCcCCCCCCcccccccCCCCCCCCc-ccccccc----ccccccceeeec
Q psy2897 60 GLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSY-EELSSSQ----ELLETGIKVIDL 134 (467)
Q Consensus 60 Gl~~G~~V~~tg~~~~vpvg~~lLGRVld~lG~PiDg~~~~~~~~~~pi~~~~p~~-~~R~~~~----~~l~TGIr~ID~ 134 (467)
+|+.||.|...-++.+ -++.++ .+++. +++++..+.....+..++..+|.+ .+|..++ +|+.||||+||.
T Consensus 93 ~lr~gd~v~g~~r~~~--~~ER~f-aLl~v--~~vn~~~pe~~~~ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~ 167 (422)
T 3ice_A 93 NLRTGDTISGKIRPPK--EGERYF-ALLKV--NEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDL 167 (422)
T ss_dssp TCCTTCEEEEEEECCC--SSCCSE-EEEEE--EEESSSCHHHHTTSCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHH
T ss_pred CCCCCCEEEEEEeCCC--ccchHH-HHhcc--CcccCCChhhhcCCceeccccccCCCCccccccCCCCcccccceeeee
Confidence 9999999998876654 233222 23332 233443332233344555544433 3455666 799999999999
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHHHHhhCCCE-EEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEe
Q psy2897 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGL-SVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYG 213 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv-~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~ 213 (467)
++|+++|||++|||++|+|||+|+.+|+++.+++++++ |||++||||++|+++|++.+ +++||++
T Consensus 168 ~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~~--------------~~~vV~a 233 (422)
T 3ice_A 168 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV--------------KGEVVAS 233 (422)
T ss_dssp HSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTC--------------SSEEEEE
T ss_pred eeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHHh--------------CeEEEEe
Confidence 99999999999999999999999999999988888776 88999999999999999887 7899999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcC-CC
Q psy2897 214 QMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAS-TK 292 (467)
Q Consensus 214 t~d~~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~-~~ 292 (467)
|+|+||.+|++++++|+++|||||++|+|||+++||+||||+|+||+++++||+|+ +||||++|+.+++|+||||+ ++
T Consensus 234 tadep~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR~A~A~revs~~~Ge~ps-~Gyp~~~~~~~~rl~erA~~~~~ 312 (422)
T 3ice_A 234 TFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNVEE 312 (422)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHHHHHHHHHHSCCSSCBCS-SSCBHHHHHHHHHHHTTCEEESS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchHHHHHHHHHHHhcCCCCC-CCcCHHHHhhhHHHHHhccccCC
Confidence 99999999999999999999999999999999999999999999999999999998 99999999999999999997 57
Q ss_pred CCceeEEEEEEec-CCCCCCCcccccccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHH
Q psy2897 293 KGSITSIQAVYVP-ADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQ 371 (467)
Q Consensus 293 ~GSiT~~~tv~~~-~~d~~dpi~~~~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la 371 (467)
+||||+|+||++| |||++|||+|++++|+||||+|||+||++||||||||+.|+||+| +.+++++|+++++++|++|+
T Consensus 313 ~GSIT~i~tvlv~tgdd~~dpI~d~~~~i~dg~ivLsR~La~~giyPAIDvl~S~SR~~-~~~~~~~~~~~a~~lr~~la 391 (422)
T 3ice_A 313 GGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKE-ELLTTQEELQKMWILRKIIH 391 (422)
T ss_dssp SCEEEEEEEECCSSSCHHHHHHHHHHHHHCSEEEEBCHHHHHTTCSSCBCTTTCEESSG-GGSSCHHHHHHHHHHHHHHT
T ss_pred CcceeEEEEEEecCCCcccchHHHHhcccCCceEEEcHHHHhcCCCCccCccccccccc-hhhCCHHHHHHHHHHHHHHH
Confidence 9999999999999 899999999999999999999999999999999999999999998 78899999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCH
Q psy2897 372 RYKELRDIISILGMDELSP 390 (467)
Q Consensus 372 ~~~~~~~~i~~~g~~~~~~ 390 (467)
+|++++++..+.+.-.-+.
T Consensus 392 ~~~e~~~~~~ll~~~~~t~ 410 (422)
T 3ice_A 392 PMGEIDAMEFLINKLAMTK 410 (422)
T ss_dssp TSCHHHHHHHHHHTTTTSC
T ss_pred hCchHHHHHHHHHHhhcCC
Confidence 9999999999887644333
No 18
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=100.00 E-value=6.9e-71 Score=564.01 Aligned_cols=344 Identities=28% Similarity=0.424 Sum_probs=324.2
Q ss_pred ceeecCCCCCcceEEEeecCcCCCCC-CcccccccCCCCCCCCccccccccccccccceeeecccccccCceeeeecCCC
Q psy2897 73 PIMIPVGKATLGRIINVLGDPIDEKG-NISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAG 151 (467)
Q Consensus 73 ~~~vpvg~~lLGRVld~lG~PiDg~~-~~~~~~~~pi~~~~p~~~~R~~~~~~l~TGIr~ID~l~pigrGqr~~I~g~~g 151 (467)
+++||||++|||||+|++|+|+|+.+ ++...++||++.+||++.+|..+++++.||+++||.++||++||+++|+|++|
T Consensus 2 ~~~~~vg~~~lGrv~~~~g~p~d~~~~~~~~~~~~~i~~~~~~~i~~~~l~~~~~tg~~ald~ll~i~~Gq~~gIiG~nG 81 (347)
T 2obl_A 2 SHKIRVGDALLGRLIDGIGRPMESNIVAPYLPFERSLYAEPPDPLLRQVIDQPFILGVRAIDGLLTCGIGQRIGIFAGSG 81 (347)
T ss_dssp CCEEEECGGGTTCEECTTSCBCSCCSSCCCCCEEEESCCCCSCSTTCCCCCSEECCSCHHHHHHSCEETTCEEEEEECTT
T ss_pred CceeecCccccCCEECCCCCcCCCCCCCCCCCCcccccCCCCCCeeecccceecCCCCEEEEeeeeecCCCEEEEECCCC
Confidence 68999999999999999999999998 88877889999999999999999999999999999999999999999999999
Q ss_pred CCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHH
Q psy2897 152 VGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLT 231 (467)
Q Consensus 152 ~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~ 231 (467)
+|||||+.+|+.+. .+++.+++++|||.+|+++++..+ +.+.++ +++++++++++|+..|+.+++.+++
T Consensus 82 aGKTTLl~~I~g~~---~~~~g~i~~~G~~~~ev~~~i~~~-~~~~~~-------~~v~~~~~~~~~~~~r~~~~~~~~~ 150 (347)
T 2obl_A 82 VGKSTLLGMICNGA---SADIIVLALIGERGREVNEFLALL-PQSTLS-------KCVLVVTTSDRPALERMKAAFTATT 150 (347)
T ss_dssp SSHHHHHHHHHHHS---CCSEEEEEEESCCHHHHHHHHTTS-CHHHHT-------TEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCC---CCCEEEEEEecccHHHHHHHHHhh-hhhhhh-------ceEEEEECCCCCHHHHHHHHHHHHH
Confidence 99999999998863 357889999999999999887663 223454 8999999999999999999999999
Q ss_pred HHHHHHHCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCCCCCceeEEEEEEecCCCCCC
Q psy2897 232 IAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQAVYVPADDLTD 311 (467)
Q Consensus 232 ~AE~fr~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~~~GSiT~~~tv~~~~~d~~d 311 (467)
+||||+++|++|++++|++++|++|+|++++++++||.+.||||++++.+.+++||+++.++||||+++||+++++|+++
T Consensus 151 ~ae~~~~~~~~vl~~ld~~~~lS~g~r~v~lal~~p~~t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~~ 230 (347)
T 2obl_A 151 IAEYFRDQGKNVLLMMDSVTRYARAARDVGLASGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVND 230 (347)
T ss_dssp HHHHHHTTTCEEEEEEETHHHHHHHHHHHHHHTTCCCCBTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCCC
T ss_pred HHHHHHhccccHHHHHhhHHHHHHHHHHHHHHcCCCCcccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999986457999999999999999999
Q ss_pred CcccccccccceEEEeehhhhhcCCCCcccCCCCCcCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHH
Q psy2897 312 PSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPE 391 (467)
Q Consensus 312 pi~~~~~~i~dG~ivLsr~La~~g~~PAID~l~S~SR~~~~~~~~~~~~~~a~~~r~~la~~~~~~~~i~~~g~~~~~~~ 391 (467)
|++|.++.+.||||+||+.+++.++||||||+.|+||++ ..+++++|++++.++|++|++|++++++++++||++++|+
T Consensus 231 ~i~d~v~~i~dG~Ivl~~~l~~~~~~Paid~~~S~sr~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 309 (347)
T 2obl_A 231 PIGDEVRSILDGHIVLTRELAEENHFPAIDIGLSASRVM-HNVVTSEHLRAAAECKKLIATYKNPELLIRIGEYTMGQDP 309 (347)
T ss_dssp HHHHHHHHHCSEEEEBCHHHHTTTCSSCBCGGGCEETTH-HHHSCHHHHHHHHHHHHHHHHCCCTHHHHTTTCCCCCSCH
T ss_pred hhhhheEEeeCcEEEEeCCHHHcCCCCCcCccccccccc-cccCCHHHHHHHHHHHHHHHccHHHHHHHHhcCCcCCCCH
Confidence 999999999999999999999999999999999999999 5688999999999999999999999999999999999886
Q ss_pred H-HHHHHHHHHHHHHhcCCCcccceeccCCCeeecHHHHHHHHHHhhc
Q psy2897 392 D-KLLVARARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISS 438 (467)
Q Consensus 392 ~-~~~~~~~~~i~~fl~Q~~~~~e~~t~~~~~~~~~~et~~~l~~i~~ 438 (467)
+ +.+++++++|++||+|+++ ++++++||+..|++|+.
T Consensus 310 ~~~~~~~~~~~~~~fl~Q~~~----------~~~~~~~~~~~~~~~~~ 347 (347)
T 2obl_A 310 EADKAIKNRKLIQNFIQQSTK----------DISSYEKTIESLFKVVA 347 (347)
T ss_dssp HHHHHHHTHHHHHHHHCCCTT----------CCCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhCCCCC----------CCCCHHHHHHHHHHHhC
Confidence 5 8999999999999999987 79999999999999863
No 19
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=98.27 E-value=7.8e-06 Score=76.98 Aligned_cols=64 Identities=31% Similarity=0.422 Sum_probs=51.0
Q ss_pred ccccccceeeecccc--cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHH
Q psy2897 123 ELLETGIKVIDLICP--FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGN 186 (467)
Q Consensus 123 ~~l~TGIr~ID~l~p--igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~ 186 (467)
+.+.||+..+|-++. +.+|+-+.|.|+||+|||+++.+++.+.+.++...++|...-+..+++.
T Consensus 10 ~ri~TGi~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~ 75 (251)
T 2zts_A 10 RRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLR 75 (251)
T ss_dssp CEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHH
T ss_pred CeecCCcHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHH
Confidence 347899999999996 9999999999999999999999999876555444555655555555554
No 20
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=98.25 E-value=2.1e-06 Score=86.21 Aligned_cols=111 Identities=13% Similarity=0.202 Sum_probs=72.8
Q ss_pred ccccccceeeecccc------cccCceeeeecCCCCCchhhHHHHHHHHHhhC-CCEEEEEEecCCchHHHHHHHHHHhh
Q psy2897 123 ELLETGIKVIDLICP------FSKGGKVGLFGGAGVGKTVNMMELINNIAKAH-SGLSVFTGVGERTREGNDFYHEMIEA 195 (467)
Q Consensus 123 ~~l~TGIr~ID~l~p------igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~-~dv~V~~liGeR~~ev~e~~~~~~~~ 195 (467)
+.+.||+..+|.++. +.+| ++.|+|+||+|||+|+.+++.+.++.+ ...++|.---+..+.. . ...-
T Consensus 5 ~risTGi~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~--r---a~~l 78 (333)
T 3io5_A 5 DVVRTKIPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA--Y---LRSM 78 (333)
T ss_dssp -CBCCSCHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH--H---HHHT
T ss_pred CEecCCCHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH--H---HHHh
Confidence 457899999999998 8899 999999999999999999999877653 3566664332333332 1 2222
Q ss_pred cccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHH--HHCCCcEEEEEeChhHHH
Q psy2897 196 KVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGF--RDEGKDVLFFIDNIYRYT 254 (467)
Q Consensus 196 ~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~f--r~~g~~Vlvi~Ds~tr~a 254 (467)
|+-- ..++++...+ .++. ++.+++.+ ..++.-.++|+||++-+.
T Consensus 79 Gvd~-------d~llv~~~~~---~E~~-----~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 79 GVDP-------ERVIHTPVQS---LEQL-----RIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp TCCG-------GGEEEEECSB---HHHH-----HHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred CCCH-------HHeEEEcCCC---HHHH-----HHHHHHHHHHhhccCceEEEEecccccc
Confidence 3311 2244444332 1221 14444554 345788999999999765
No 21
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.00 E-value=8.7e-06 Score=82.98 Aligned_cols=110 Identities=20% Similarity=0.272 Sum_probs=70.9
Q ss_pred ccccccceeeecccc---cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccC
Q psy2897 123 ELLETGIKVIDLICP---FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVN 199 (467)
Q Consensus 123 ~~l~TGIr~ID~l~p---igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~ 199 (467)
+.+.||+..+|-++. +.+|.-+.|+|++|+|||+|+.+++.+....+..+.++ -+|....-. ..+.+ ++..
T Consensus 40 ~~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyI--d~E~s~~~~-ra~rl---gv~~ 113 (356)
T 3hr8_A 40 EVIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFI--DAEHALDPV-YAKNL---GVDL 113 (356)
T ss_dssp CEECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE--ESSCCCCHH-HHHHH---TCCG
T ss_pred ceecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE--ecccccchH-HHHHc---CCch
Confidence 568899999999987 88999999999999999999999999876644334333 233322211 22333 2211
Q ss_pred CCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHH
Q psy2897 200 LDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYT 254 (467)
Q Consensus 200 ~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a 254 (467)
..+.+....+ ....+.+++.+...+..-++++||++.+.
T Consensus 114 -------~~l~i~~~~~---------~e~~l~~~~~l~~~~~~dlvVIDSi~~l~ 152 (356)
T 3hr8_A 114 -------KSLLISQPDH---------GEQALEIVDELVRSGVVDLIVVDSVAALV 152 (356)
T ss_dssp -------GGCEEECCSS---------HHHHHHHHHHHHHTSCCSEEEEECTTTCC
T ss_pred -------hhhhhhhccC---------HHHHHHHHHHHhhhcCCCeEEehHhhhhc
Confidence 1223333222 22344556666666555678889998655
No 22
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.93 E-value=1.5e-05 Score=80.88 Aligned_cols=111 Identities=17% Similarity=0.237 Sum_probs=71.7
Q ss_pred cccccccceeeecccc---cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhccc
Q psy2897 122 QELLETGIKVIDLICP---FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVV 198 (467)
Q Consensus 122 ~~~l~TGIr~ID~l~p---igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~ 198 (467)
.+.+.||+..+|.++. +-+|..+.|+|++|+|||+|+.+++.+..+.+..+.++. ..+..++. ..+. .|.-
T Consensus 39 ~~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~-~E~~~~~~--~a~~---lG~~ 112 (349)
T 2zr9_A 39 ISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID-AEHALDPE--YAKK---LGVD 112 (349)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE-SSCCCCHH--HHHH---TTCC
T ss_pred CCccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE-CCCCcCHH--HHHH---cCCC
Confidence 4578999999999886 669999999999999999999999988776543344333 22223322 1122 2321
Q ss_pred CCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHH
Q psy2897 199 NLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYT 254 (467)
Q Consensus 199 ~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a 254 (467)
. ..+.+....+ .. ..+.+++.+..++..-++|+||++.+.
T Consensus 113 ~-------~~l~i~~~~~---~e------~~l~~~~~l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 113 T-------DSLLVSQPDT---GE------QALEIADMLVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp G-------GGCEEECCSS---HH------HHHHHHHHHHTTTCCSEEEEECGGGCC
T ss_pred H-------HHeEEecCCC---HH------HHHHHHHHHHhcCCCCEEEEcChHhhc
Confidence 1 1233333222 22 234566766666666788999999764
No 23
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.90 E-value=2.3e-05 Score=78.40 Aligned_cols=120 Identities=18% Similarity=0.162 Sum_probs=73.4
Q ss_pred cccccccceeeeccc--ccccCceeeeecCCCCCchhhHHHHHHHHHhhC-----CCEEEEEEecCC---chHHHHHHHH
Q psy2897 122 QELLETGIKVIDLIC--PFSKGGKVGLFGGAGVGKTVNMMELINNIAKAH-----SGLSVFTGVGER---TREGNDFYHE 191 (467)
Q Consensus 122 ~~~l~TGIr~ID~l~--pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~-----~dv~V~~liGeR---~~ev~e~~~~ 191 (467)
...+.||+..+|.++ .+-+|+-+.|+|++|+|||+|+.+++.+.+... ..-++|. ..|. .+.+.+..+.
T Consensus 86 ~~~i~TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi-~~e~~~~~~~l~~~~~~ 164 (324)
T 2z43_A 86 VKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYI-DTEGTFRWERIENMAKA 164 (324)
T ss_dssp CCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEE-ESSSCCCHHHHHHHHHH
T ss_pred CCcccCCchhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEE-ECCCCCCHHHHHHHHHH
Confidence 467899999999998 588999999999999999999999998754321 2233443 3443 3444444333
Q ss_pred HHh--hcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEeChhHHHHH
Q psy2897 192 MIE--AKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDE-GKDVLFFIDNIYRYTLA 256 (467)
Q Consensus 192 ~~~--~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~-g~~Vlvi~Ds~tr~a~A 256 (467)
+.- ..+++ + +.+....+ .++. ...+..++.+..+ +..-+||+||++.+.++
T Consensus 165 ~g~~~~~~~~-------~-l~~~~~~~---~~~~---~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 165 LGLDIDNVMN-------N-IYYIRAIN---TDHQ---IAIVDDLQELVSKDPSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp TTCCHHHHHH-------T-EEEEECCS---HHHH---HHHHHHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred hCCCHHHHhc-------c-EEEEeCCC---HHHH---HHHHHHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence 210 00111 2 33443332 1111 1223334444333 56778999999988764
No 24
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.87 E-value=2.7e-05 Score=73.04 Aligned_cols=43 Identities=26% Similarity=0.280 Sum_probs=39.4
Q ss_pred ccccccceeeeccc--ccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2897 123 ELLETGIKVIDLIC--PFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 123 ~~l~TGIr~ID~l~--pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+.+.||+..+|-++ .+.+|+.++|.|++|+|||+|+.+++.+.
T Consensus 4 ~~i~tG~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 4 IQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp CEECCSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEecCCChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999 49999999999999999999999999864
No 25
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.84 E-value=2.4e-05 Score=79.65 Aligned_cols=110 Identities=17% Similarity=0.270 Sum_probs=70.3
Q ss_pred cccccccceeeecccc---cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCc-hHHHHHHHHHHhhcc
Q psy2897 122 QELLETGIKVIDLICP---FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERT-REGNDFYHEMIEAKV 197 (467)
Q Consensus 122 ~~~l~TGIr~ID~l~p---igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~-~ev~e~~~~~~~~~~ 197 (467)
.+.+.||+..+|.++. +-+|.-+.|+|++|+|||+|+.+++.+.++.+..+.++.+ |.. ++. ....+ |.
T Consensus 41 ~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~--E~s~~~~--~a~~~---g~ 113 (356)
T 1u94_A 41 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA--EHALDPI--YARKL---GV 113 (356)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES--SCCCCHH--HHHHT---TC
T ss_pred CCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC--CCCccHH--HHHHc---CC
Confidence 4578999999999986 8899999999999999999999999987765434444432 322 222 11222 22
Q ss_pred cCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHH
Q psy2897 198 VNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYT 254 (467)
Q Consensus 198 ~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a 254 (467)
-. .+ +.++...+ .+ ....+++.+..++..-+||+|+++.+.
T Consensus 114 ~~------~~-l~i~~~~~---~e------~~~~~~~~l~~~~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 114 DI------DN-LLCSQPDT---GE------QALEICDALARSGAVDVIVVDSVAALT 154 (356)
T ss_dssp CG------GG-CEEECCSS---HH------HHHHHHHHHHHHTCCSEEEEECGGGCC
T ss_pred Ch------hh-eeeeCCCC---HH------HHHHHHHHHHhccCCCEEEEcCHHHhc
Confidence 11 12 23332221 22 234555666555555578899999765
No 26
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.81 E-value=2.8e-05 Score=71.82 Aligned_cols=39 Identities=28% Similarity=0.353 Sum_probs=37.1
Q ss_pred ccccceeeecccc--cccCceeeeecCCCCCchhhHHHHHH
Q psy2897 125 LETGIKVIDLICP--FSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 125 l~TGIr~ID~l~p--igrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
+.||+..+|.++. +.+|+.++|.|++|+|||+|+.+++.
T Consensus 2 i~tG~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 2 LSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp BCCSCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cccCcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999995 99999999999999999999999987
No 27
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.79 E-value=3.2e-05 Score=79.02 Aligned_cols=111 Identities=20% Similarity=0.249 Sum_probs=71.6
Q ss_pred cccccccceeeecccc---cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhccc
Q psy2897 122 QELLETGIKVIDLICP---FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVV 198 (467)
Q Consensus 122 ~~~l~TGIr~ID~l~p---igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~ 198 (467)
.+.+.||+..+|.++. +-+|.-+.|+|++|+|||+|+.+++.+.++.+..+.++. .-....+. ..+.+ |+
T Consensus 52 ~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~-~E~s~~~~--~a~~~---g~- 124 (366)
T 1xp8_A 52 VQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID-AEHALDPV--YARAL---GV- 124 (366)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE-SSCCCCHH--HHHHT---TC-
T ss_pred CceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE-CCCChhHH--HHHHc---CC-
Confidence 4578999999999986 779999999999999999999999998776543444443 22223332 11222 22
Q ss_pred CCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHH
Q psy2897 199 NLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYT 254 (467)
Q Consensus 199 ~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a 254 (467)
+. ..+++..+.+ . ...+.+++.+..++..-+||+||++.+.
T Consensus 125 d~------~~l~i~~~~~---~------e~~l~~l~~l~~~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 125 NT------DELLVSQPDN---G------EQALEIMELLVRSGAIDVVVVDSVAALT 165 (366)
T ss_dssp CG------GGCEEECCSS---H------HHHHHHHHHHHTTTCCSEEEEECTTTCC
T ss_pred CH------HHceeecCCc---H------HHHHHHHHHHHhcCCCCEEEEeChHHhc
Confidence 10 1233333221 1 2234566677666656688899999653
No 28
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.76 E-value=5e-05 Score=76.63 Aligned_cols=46 Identities=20% Similarity=0.092 Sum_probs=41.3
Q ss_pred cccccccceeeeccc--ccccCceeeeecCCCCCchhhHHHHHHHHHh
Q psy2897 122 QELLETGIKVIDLIC--PFSKGGKVGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 122 ~~~l~TGIr~ID~l~--pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
...+.||+..+|.++ .+-+|+-+.|+|++|+|||+|+.+++.+...
T Consensus 101 ~~~i~TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~ 148 (343)
T 1v5w_A 101 VFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQL 148 (343)
T ss_dssp CCCBCCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTS
T ss_pred cceeecCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 467899999999998 4889999999999999999999999987543
No 29
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.72 E-value=9.3e-05 Score=68.69 Aligned_cols=43 Identities=26% Similarity=0.296 Sum_probs=38.9
Q ss_pred ccccccceeeeccc--ccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2897 123 ELLETGIKVIDLIC--PFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 123 ~~l~TGIr~ID~l~--pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+.+.||+..+|.++ .+.+|+.++|+|++|+|||||+..++...
T Consensus 5 ~~i~tG~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 5 GRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp CEECCSCHHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CccCCCChhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56889999999887 59999999999999999999999998754
No 30
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.70 E-value=0.00014 Score=72.32 Aligned_cols=120 Identities=17% Similarity=0.082 Sum_probs=73.5
Q ss_pred cccccccceeeeccc--ccccCceeeeecCCCCCchhhHHHHHHHHHhh-----------CC----CEEEEEEecCC---
Q psy2897 122 QELLETGIKVIDLIC--PFSKGGKVGLFGGAGVGKTVNMMELINNIAKA-----------HS----GLSVFTGVGER--- 181 (467)
Q Consensus 122 ~~~l~TGIr~ID~l~--pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~-----------~~----dv~V~~liGeR--- 181 (467)
...+.||+..+|.++ .+-+|+-+.|+|++|+|||+|+.+++.+.... .+ .-++| +..|.
T Consensus 77 ~~~i~TG~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~y-i~~e~~~~ 155 (322)
T 2i1q_A 77 VWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVY-IDTEGTFR 155 (322)
T ss_dssp CCEECCSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEE-EESSSCCC
T ss_pred CCeecCCChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEE-EECCCCCC
Confidence 467899999999998 48899999999999999999999999874211 11 23333 34444
Q ss_pred chHHHHHHHHHHh--hcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEeChhHHHHH
Q psy2897 182 TREGNDFYHEMIE--AKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDE-GKDVLFFIDNIYRYTLA 256 (467)
Q Consensus 182 ~~ev~e~~~~~~~--~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~-g~~Vlvi~Ds~tr~a~A 256 (467)
.+++.+..+.+.- ..+++ + +.+....+ .++ ....+...+.+..+ +..-+||+||++.+.++
T Consensus 156 ~~~l~~~~~~~g~~~~~~~~-------~-l~~~~~~~---~~~---~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 219 (322)
T 2i1q_A 156 PERIMQMAEHAGIDGQTVLD-------N-TFVARAYN---SDM---QMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRN 219 (322)
T ss_dssp HHHHHHHHHHHTCCHHHHHH-------T-EEEEECSS---HHH---HHHHHHTHHHHHHTTCEEEEEEEECSSHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHhc-------C-EEEEeCCC---HHH---HHHHHHHHHHHHhhccCccEEEEECcHHHHHH
Confidence 3455544443310 00111 3 33333332 111 11223334444444 56678999999988764
No 31
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.67 E-value=6.6e-05 Score=77.62 Aligned_cols=46 Identities=26% Similarity=0.257 Sum_probs=41.0
Q ss_pred ccccccccceeeeccc--ccccCceeeeecCCCCCchhhHHHHHHHHH
Q psy2897 121 SQELLETGIKVIDLIC--PFSKGGKVGLFGGAGVGKTVNMMELINNIA 166 (467)
Q Consensus 121 ~~~~l~TGIr~ID~l~--pigrGqr~~I~g~~g~GKt~L~~~i~~~~~ 166 (467)
....+.||+..+|-++ .+.+|+.+.|+|++|+|||+|+.+++.+..
T Consensus 156 ~~~~i~TG~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~ 203 (400)
T 3lda_A 156 ELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQ 203 (400)
T ss_dssp TSCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred cCCccccCChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhc
Confidence 3567899999999998 499999999999999999999999987643
No 32
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.63 E-value=3.4e-05 Score=71.51 Aligned_cols=54 Identities=26% Similarity=0.295 Sum_probs=45.0
Q ss_pred ccccccceeeecccc--cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEE
Q psy2897 123 ELLETGIKVIDLICP--FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFT 176 (467)
Q Consensus 123 ~~l~TGIr~ID~l~p--igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~ 176 (467)
+.+.||++.+|.++. +.+|+.++|.|++|+|||||+.+++......+..+.++.
T Consensus 3 ~~i~tg~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 3 SRLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp CEECCSCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred ccccCCchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 357899999999985 999999999999999999999999987665544444443
No 33
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.59 E-value=0.00021 Score=71.14 Aligned_cols=47 Identities=15% Similarity=0.233 Sum_probs=42.3
Q ss_pred ccccccceeeecccc-cccCceeeeecCCCCCchhhHHHHHHHHHhhC
Q psy2897 123 ELLETGIKVIDLICP-FSKGGKVGLFGGAGVGKTVNMMELINNIAKAH 169 (467)
Q Consensus 123 ~~l~TGIr~ID~l~p-igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~ 169 (467)
..+.||+..+|.++. +.+|+-+.|.|+||+|||+++.+++.+.+.++
T Consensus 49 ~~i~TG~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g 96 (315)
T 3bh0_A 49 TGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND 96 (315)
T ss_dssp CSBCCSCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred CCccCChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 467899999999875 88999999999999999999999999887654
No 34
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.51 E-value=0.00012 Score=74.06 Aligned_cols=120 Identities=18% Similarity=0.180 Sum_probs=72.2
Q ss_pred cccccccceeeeccc--ccccCceeeeecCCCCCchhhHHHHHHHHHhh--C---CCEEEEEEecCC---chHHHHHHHH
Q psy2897 122 QELLETGIKVIDLIC--PFSKGGKVGLFGGAGVGKTVNMMELINNIAKA--H---SGLSVFTGVGER---TREGNDFYHE 191 (467)
Q Consensus 122 ~~~l~TGIr~ID~l~--pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~--~---~dv~V~~liGeR---~~ev~e~~~~ 191 (467)
.+.+.||+..+|.++ .+.+|+.++|+|++|+|||||+.+++.+.... . .+-+||. -+|. .+.+..+.+.
T Consensus 110 ~~~isTG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i-~~e~~~~~~~i~~i~q~ 188 (349)
T 1pzn_A 110 IGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWI-DTENTFRPERIREIAQN 188 (349)
T ss_dssp CCEECCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEE-ESSSCCCHHHHHHHHHT
T ss_pred CCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEE-eCCCCCCHHHHHHHHHH
Confidence 467899999999996 48899999999999999999999999875321 1 1333443 2333 2344333332
Q ss_pred HH--hhcccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHC-----CCcEEEEEeChhHHHHH
Q psy2897 192 MI--EAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDE-----GKDVLFFIDNIYRYTLA 256 (467)
Q Consensus 192 ~~--~~~~~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~-----g~~Vlvi~Ds~tr~a~A 256 (467)
+. ...+++ +. .+....+ +.. ....+..+..+..+ ...-++|+|++|...++
T Consensus 189 ~~~~~~~v~~-------ni-~~~~~~~--~~~----~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~ 246 (349)
T 1pzn_A 189 RGLDPDEVLK-------HI-YVARAFN--SNH----QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRS 246 (349)
T ss_dssp TTCCHHHHGG-------GE-EEEECCS--HHH----HHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHH
T ss_pred cCCCHHHHhh-------CE-EEEecCC--hHH----HHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhh
Confidence 10 111222 43 3333222 111 12233444555443 56789999999977655
No 35
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.50 E-value=6.7e-05 Score=70.59 Aligned_cols=44 Identities=34% Similarity=0.460 Sum_probs=39.4
Q ss_pred ccccccceeeeccc--ccccCceeeeecCCCCCchhhHHHHHHHHH
Q psy2897 123 ELLETGIKVIDLIC--PFSKGGKVGLFGGAGVGKTVNMMELINNIA 166 (467)
Q Consensus 123 ~~l~TGIr~ID~l~--pigrGqr~~I~g~~g~GKt~L~~~i~~~~~ 166 (467)
+.+.||+..+|.++ .+.+|+.++|.|++|+|||||+..++.+..
T Consensus 10 ~~i~tg~~~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~ 55 (251)
T 2ehv_A 10 RRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp CEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceeecCCHhHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 56889999999998 699999999999999999999999986444
No 36
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.46 E-value=6.4e-05 Score=70.56 Aligned_cols=54 Identities=28% Similarity=0.257 Sum_probs=44.4
Q ss_pred ccccccceeeecccc--cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEE
Q psy2897 123 ELLETGIKVIDLICP--FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFT 176 (467)
Q Consensus 123 ~~l~TGIr~ID~l~p--igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~ 176 (467)
+.+.||++.+|-++. +.+|+-++|.|++|+|||+|+.+++.+.++.+..+.++.
T Consensus 3 ~~i~tG~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 3 RRVKTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp CEECCCCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccccCCchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 357899999999964 889999999999999999999999988776543444433
No 37
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=97.39 E-value=0.00054 Score=66.74 Aligned_cols=192 Identities=10% Similarity=-0.030 Sum_probs=111.1
Q ss_pred cccccceeeecccc--cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHH-------Hh
Q psy2897 124 LLETGIKVIDLICP--FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEM-------IE 194 (467)
Q Consensus 124 ~l~TGIr~ID~l~p--igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~-------~~ 194 (467)
.+.|||.-+|.++. +-+|.-++|.|+||+|||+|+.+++.+-+++ ++-++|....|...++..-.+.+ .+
T Consensus 2 ~i~tGi~~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~-Ge~~~~~~~~e~~~~l~~~~~~~G~dl~~~~~ 80 (260)
T 3bs4_A 2 SLSWEIEELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKS-DNLVGMFSISYPLQLIIRILSRFGVDVIKYLE 80 (260)
T ss_dssp CBCCSSHHHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHT-TCEEEEEECSSCHHHHHHHHHHTTCCHHHHHH
T ss_pred cCccCcHHHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHC-CCcEEEEEEeCCHHHHHHHHHHcCCCHHHHhh
Confidence 46799999999987 8899999999999999999999999876654 67888888888888776433322 12
Q ss_pred hcccCCCCCCCceEEEE----------------EeCC-CCCHH---HHHHHHHHHHHHHHHHHH--CCCcEEEEEeChhH
Q psy2897 195 AKVVNLDKPEKSKVSMV----------------YGQM-NEPSG---NRLRVALTGLTIAEGFRD--EGKDVLFFIDNIYR 252 (467)
Q Consensus 195 ~~~~~~~~~~~~~~vvv----------------~~t~-d~~~~---~r~~~~~~a~~~AE~fr~--~g~~Vlvi~Ds~tr 252 (467)
+| +-.++ +..+ +-.+. .+++.......-||...+ ..++|++++|++..
T Consensus 81 ~g----------~l~i~d~~~~~~~~~~~~~~v~~~~~e~d~~~l~~~i~~iv~~~~~~~~i~~~~~~~rvv~vidslds 150 (260)
T 3bs4_A 81 NH----------RLAIVDTFGSFHGIKATMPGVWYLEGMLSSETLPIKYAKAVEDHKKVWMDLNLFEGRELYGFAISMSG 150 (260)
T ss_dssp TT----------SEEEECHHHHHHTC---CTTEECCCSCCCTTTHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEEETGGG
T ss_pred CC----------cEEEEEcccccccccccccceecccccCCHHHHHHHHHHHHHhhccccchhhccCCceEEEEEeecch
Confidence 22 11122 1111 11221 223333333222444455 23788888888875
Q ss_pred HHHHhHHHHHhcCCCCCCCCCcCch-hHHHHHHHHH-----hcCCCCCceeEEEEEEecCCCCCCCcccccccccceEEE
Q psy2897 253 YTLAGTEVSALLGRMPSAVGYQPTL-AEEMGYLQER-----IASTKKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVV 326 (467)
Q Consensus 253 ~a~A~reis~~~ge~p~~~gyp~~~-f~~l~~l~ER-----ag~~~~GSiT~~~tv~~~~~d~~dpi~~~~~~i~dG~iv 326 (467)
+.... ++.. ...+-.++.. .-..+.|..|.+ +.. +......+..+.++.||-|.
T Consensus 151 l~~~~----------------~~~~~~~~~~~ll~~~~~~~~~~~~~~~ttil-~~~---~~~~~~~~~~l~~laD~VI~ 210 (260)
T 3bs4_A 151 YLEVF----------------TPEETLRYLETSAEVRYGHPAYKKYPRGTNFW-LWE---GVKDKRVLLSVYRRADYVLK 210 (260)
T ss_dssp GGGTS----------------CHHHHHHHHHHHHHHHHHCHHHHSSCCCEEEE-EEE---SCSCHHHHHHHHHHCSEEEE
T ss_pred HHHHh----------------ChhhHHHHHHHHHHhhhhHHHHhccCCcEEEE-EEC---CCcccccccceEEEeeEEEE
Confidence 54332 1111 1111122111 111224555544 433 33334455667788999999
Q ss_pred eehhhhhcCCCCcccCCCCC
Q psy2897 327 LSRDIASLGIYPAIDPLDST 346 (467)
Q Consensus 327 Lsr~La~~g~~PAID~l~S~ 346 (467)
|.....+.+..=++-|+++-
T Consensus 211 lr~~e~~g~~rR~L~V~K~R 230 (260)
T 3bs4_A 211 TRSSLGENGIKRELLVIKTP 230 (260)
T ss_dssp EEEEEETTEEEEEEEEEECC
T ss_pred EEEEecCCceEEEEEEEECC
Confidence 97766654445556665543
No 38
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.15 E-value=0.0012 Score=68.79 Aligned_cols=54 Identities=20% Similarity=0.392 Sum_probs=44.9
Q ss_pred ccccccceeeecccc-cccCceeeeecCCCCCchhhHHHHHHHHHhhCC-CEEEEE
Q psy2897 123 ELLETGIKVIDLICP-FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHS-GLSVFT 176 (467)
Q Consensus 123 ~~l~TGIr~ID~l~p-igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~-dv~V~~ 176 (467)
..+.||+..+|.++. +-+|+-+.|.|+||+|||+|+.+++.+.+..++ .+.++.
T Consensus 184 ~~i~tG~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 184 TGIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp CSBCCSCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCCCCcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 568899999999885 889999999999999999999999999876433 344443
No 39
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.97 E-value=0.00065 Score=82.26 Aligned_cols=111 Identities=18% Similarity=0.240 Sum_probs=73.1
Q ss_pred cccccccceeeecccc---cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhccc
Q psy2897 122 QELLETGIKVIDLICP---FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVV 198 (467)
Q Consensus 122 ~~~l~TGIr~ID~l~p---igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~ 198 (467)
.+.+.||+..+|-++. +-+|.-+.|+|+||+|||+|+.+++.+.++.+. .++| +.+|...+-. . ....|+-
T Consensus 361 ~~~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~-~vly-is~E~s~~~~-~---a~~lGvd 434 (2050)
T 3cmu_A 361 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK-TCAF-IDAEHALDPI-Y---ARKLGVD 434 (2050)
T ss_dssp CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTC-CEEE-ECTTSCCCHH-H---HHHTTCC
T ss_pred CceeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCC-eEEE-EEcCCCHHHH-H---HHHcCCC
Confidence 4568999999999997 889999999999999999999999998876432 3333 3344433221 1 2222321
Q ss_pred CCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHH
Q psy2897 199 NLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYT 254 (467)
Q Consensus 199 ~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a 254 (467)
. .+ ++|....+ . ...+.+++++..++.--++|+||++-+.
T Consensus 435 ~------~~-L~I~~~~~---~------e~il~~~~~lv~~~~~~lIVIDSL~al~ 474 (2050)
T 3cmu_A 435 I------DN-LLCSQPDT---G------EQALEICDALARSGAVDVIVVDSVAALT 474 (2050)
T ss_dssp T------TT-CEEECCSS---H------HHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred H------HH-eEEeCCCC---H------HHHHHHHHHHHHhcCCcEEEECCHHHhh
Confidence 1 13 33443322 2 2345566776655556688999999665
No 40
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.96 E-value=0.00075 Score=80.70 Aligned_cols=111 Identities=17% Similarity=0.226 Sum_probs=72.1
Q ss_pred cccccccceeeecccc---cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhccc
Q psy2897 122 QELLETGIKVIDLICP---FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVV 198 (467)
Q Consensus 122 ~~~l~TGIr~ID~l~p---igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~ 198 (467)
.+.+.||+..+|.++. +-+|.-+.|.|+||+|||+|+.+++.+.++.+ ..++|.-.-+..++.. ....|+-
T Consensus 361 ~~~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G-~~vlyis~E~s~~~~~-----a~~lGvd 434 (1706)
T 3cmw_A 361 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG-KTCAFIDAEHALDPIY-----ARKLGVD 434 (1706)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTT-CCEEEECTTSCCCHHH-----HHHTTCC
T ss_pred CceeccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEccCchHHHH-----HHHcCCC
Confidence 4578999999999997 88999999999999999999999999887653 3444443333333331 2222321
Q ss_pred CCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHH
Q psy2897 199 NLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYT 254 (467)
Q Consensus 199 ~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a 254 (467)
- .+ +.+.... + .++ .+.+++.+..++.--+|++||++-+.
T Consensus 435 ~------~~-L~i~~~~--~-~e~------~l~~l~~lv~~~~~~lVVIDSL~al~ 474 (1706)
T 3cmw_A 435 I------DN-LLCSQPD--T-GEQ------ALEICDALARSGAVDVIVVDSVAALT 474 (1706)
T ss_dssp G------GG-CEEECCS--S-HHH------HHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred H------HH-eEEcCCC--C-HHH------HHHHHHHHHHhcCCCEEEECCHHHhh
Confidence 1 13 2333322 1 222 33455566555556688999999654
No 41
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.88 E-value=0.0009 Score=81.07 Aligned_cols=111 Identities=16% Similarity=0.242 Sum_probs=74.4
Q ss_pred ccccccccceeeecccc---cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcc
Q psy2897 121 SQELLETGIKVIDLICP---FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKV 197 (467)
Q Consensus 121 ~~~~l~TGIr~ID~l~p---igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~ 197 (467)
..+.+.||+..+|.++. +-+|..+.|+|++|+|||+|+..++.+..+++..+.+|.+-+....+. .+.+ |+
T Consensus 1404 ~~~~isTG~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~---a~~~---G~ 1477 (2050)
T 3cmu_A 1404 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKL---GV 1477 (2050)
T ss_dssp SCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH---HHHT---TC
T ss_pred ccccccCCCHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH---HHHc---CC
Confidence 35679999999999999 889999999999999999999999987665543444443333222333 2222 32
Q ss_pred -cCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHH
Q psy2897 198 -VNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYT 254 (467)
Q Consensus 198 -~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a 254 (467)
++ + .. +.+.+ |. ..++.+.+.+..+++--+|++|++..|.
T Consensus 1478 dl~-------~-l~-v~~~~-~~-------E~~l~~~~~lvr~~~~~lVVIDsi~al~ 1518 (2050)
T 3cmu_A 1478 DID-------N-LL-CSQPD-TG-------EQALEICDALARSGAVDVIVVDSVAALT 1518 (2050)
T ss_dssp CTT-------T-CE-EECCS-SH-------HHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred Cch-------h-ce-eecCC-hH-------HHHHHHHHHHHhcCCCCEEEEcChhHhc
Confidence 22 2 22 33333 22 2455677777766777788899997544
No 42
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.86 E-value=0.0006 Score=66.55 Aligned_cols=54 Identities=17% Similarity=0.091 Sum_probs=43.6
Q ss_pred ccccc-cceeeeccc-ccccCceeeeecCCCCCchhhHHHHHHHHHhhCC-CEEEEE
Q psy2897 123 ELLET-GIKVIDLIC-PFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHS-GLSVFT 176 (467)
Q Consensus 123 ~~l~T-GIr~ID~l~-pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~-dv~V~~ 176 (467)
..+.| |+.++|.++ .+.+|+.++|.|++|+|||||+.+++.+.+..++ .+.++.
T Consensus 15 ~~i~t~g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 15 VGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp CCBCCCSCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCcccCCHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 45778 999998776 5889999999999999999999999998765533 344443
No 43
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.85 E-value=0.0032 Score=65.51 Aligned_cols=46 Identities=22% Similarity=0.252 Sum_probs=40.5
Q ss_pred ccccccceeeecccc-cccCceeeeecCCCCCchhhHHHHHHHHHhh
Q psy2897 123 ELLETGIKVIDLICP-FSKGGKVGLFGGAGVGKTVNMMELINNIAKA 168 (467)
Q Consensus 123 ~~l~TGIr~ID~l~p-igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~ 168 (467)
..+.||+..+|.++. +-+|+-+.|.|+||+|||+++.+++.+.+..
T Consensus 181 ~~i~tG~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~ 227 (444)
T 2q6t_A 181 AGVRTGFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK 227 (444)
T ss_dssp --CCCSCHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CcccCCCHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 467899999999885 8899999999999999999999999998764
No 44
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.84 E-value=0.00068 Score=65.75 Aligned_cols=47 Identities=23% Similarity=0.340 Sum_probs=41.3
Q ss_pred ccccccccceeeecccc-cccCceeeeecCCCCCchhhHHHHHHHHHh
Q psy2897 121 SQELLETGIKVIDLICP-FSKGGKVGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 121 ~~~~l~TGIr~ID~l~p-igrGqr~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
..+.+.||+..+|.+++ +-+|+.++|+|++|+|||||+.+++..++.
T Consensus 9 ~~~~i~tg~~~ld~~lggl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 9 ILEAFAAAPPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp HHHHHHSCCCCCCEEETTEETTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCCChheeECCccCCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 45678999999998876 779999999999999999999999987653
No 45
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.84 E-value=0.0072 Score=64.16 Aligned_cols=47 Identities=23% Similarity=0.420 Sum_probs=39.6
Q ss_pred cccccccceeeeccc--ccccCceeeeecCCCCCchhhHHHHHHHHHhh
Q psy2897 122 QELLETGIKVIDLIC--PFSKGGKVGLFGGAGVGKTVNMMELINNIAKA 168 (467)
Q Consensus 122 ~~~l~TGIr~ID~l~--pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~ 168 (467)
.+.+.||+.-+|.++ .+.+|..++|.|++|+|||||+.+++.....+
T Consensus 260 ~~~l~~g~~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~ 308 (525)
T 1tf7_A 260 NVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACAN 308 (525)
T ss_dssp CCEECCSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred cceeecChHHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 345788988788664 59999999999999999999999999876543
No 46
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.83 E-value=0.00071 Score=80.93 Aligned_cols=110 Identities=18% Similarity=0.226 Sum_probs=70.6
Q ss_pred cccccccceeeecccc---cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCch-HHHHHHHHHHhhcc
Q psy2897 122 QELLETGIKVIDLICP---FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTR-EGNDFYHEMIEAKV 197 (467)
Q Consensus 122 ~~~l~TGIr~ID~l~p---igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~-ev~e~~~~~~~~~~ 197 (467)
.+.+.||+.-+|-++. +-+|.-+.|.|+||+|||+|+.+++.+.++.+..+. | +.+|... +.. ....|+
T Consensus 710 ~~~i~TG~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~Vl-y-iS~Ees~~ql~-----A~~lGv 782 (1706)
T 3cmw_A 710 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCA-F-IDAEHALDPIY-----ARKLGV 782 (1706)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE-E-ECTTSCCCHHH-----HHHTTC
T ss_pred ccccccCcHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeE-E-EeccchHHHHH-----HHHcCC
Confidence 4568999999999996 999999999999999999999999998876433333 3 3344333 331 222232
Q ss_pred cCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHH
Q psy2897 198 VNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYT 254 (467)
Q Consensus 198 ~~~~~~~~~~~vvv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a 254 (467)
-. .+ +.+.... +.+ ..+..++++..++.--++|+||++-+.
T Consensus 783 d~------~~-L~i~~~~---~le------ei~~~l~~lv~~~~~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 783 DI------DN-LLCSQPD---TGE------QALEICDALARSGAVDVIVVDSVAALT 823 (1706)
T ss_dssp CG------GG-CEEECCS---SHH------HHHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred Ch------hh-eEEecCC---cHH------HHHHHHHHHHHccCCCEEEEechhhhc
Confidence 11 12 3333322 222 344455555555455578899998543
No 47
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.72 E-value=0.0018 Score=65.06 Aligned_cols=44 Identities=20% Similarity=0.034 Sum_probs=37.8
Q ss_pred ccccccccceeeeccc-ccccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 121 SQELLETGIKVIDLIC-PFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 121 ~~~~l~TGIr~ID~l~-pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+...+.||+..+|-++ .+-+|..+.|+|+||+|||+|+.+++.+
T Consensus 102 i~~~i~TGi~~LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 102 LTGELVGCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SSTTCCSBCCEEEEETTEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred hhhccccCcHHHHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 4455779999999987 3558888999999999999999999876
No 48
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.68 E-value=0.0025 Score=67.19 Aligned_cols=46 Identities=15% Similarity=0.003 Sum_probs=41.2
Q ss_pred ccccc-cceeeecccc-cccCceeeeecCCCCCchhhHHHHHHHHHhh
Q psy2897 123 ELLET-GIKVIDLICP-FSKGGKVGLFGGAGVGKTVNMMELINNIAKA 168 (467)
Q Consensus 123 ~~l~T-GIr~ID~l~p-igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~ 168 (467)
..+.| |+..+|.++. +-+|.-+.|.|+||+|||+|+.+++.+.+..
T Consensus 222 ~~i~t~G~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~ 269 (503)
T 1q57_A 222 VGLLFSGCTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTA 269 (503)
T ss_dssp TCSCCSSCTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTT
T ss_pred CCccccchhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHh
Confidence 46789 9999999875 7799999999999999999999999988764
No 49
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.28 E-value=0.0016 Score=68.04 Aligned_cols=58 Identities=16% Similarity=0.114 Sum_probs=47.0
Q ss_pred cccccccceeeecccc-cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCC
Q psy2897 122 QELLETGIKVIDLICP-FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGER 181 (467)
Q Consensus 122 ~~~l~TGIr~ID~l~p-igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR 181 (467)
...+.||+..+|-++. +-+|+-+.|.|+||+|||+++.+++.+.+.+ +..|..+..|-
T Consensus 177 ~~gi~TG~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm 235 (444)
T 3bgw_A 177 ITGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM 235 (444)
T ss_dssp CCSBCCSCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS
T ss_pred CCCcCCCcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC
Confidence 3468899999999885 8899999999999999999999999998775 33344444443
No 50
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.27 E-value=0.0019 Score=65.12 Aligned_cols=59 Identities=24% Similarity=0.196 Sum_probs=47.6
Q ss_pred ccccccceeeecccc-cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCch
Q psy2897 123 ELLETGIKVIDLICP-FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTR 183 (467)
Q Consensus 123 ~~l~TGIr~ID~l~p-igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ 183 (467)
..+.||+..+|-++. +-+|+-+.|.|+||+|||+++.+++.+.+.. +..|..+..|-..
T Consensus 27 ~gi~TG~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSlEms~ 86 (338)
T 4a1f_A 27 TGIPTGFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSLEMSA 86 (338)
T ss_dssp CSBCCSCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEESSSCH
T ss_pred CcccCCChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCCCCH
Confidence 468899999999875 9999999999999999999999999998764 3334334455443
No 51
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.26 E-value=0.015 Score=57.68 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=25.4
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHHHHh
Q psy2897 139 SKGGKVGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
+.+..+.|.|++|+|||+|+..+++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 66788999999999999999999987644
No 52
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.86 E-value=0.021 Score=56.39 Aligned_cols=98 Identities=15% Similarity=0.256 Sum_probs=53.6
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHHHHhhCC-CE-EEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCC
Q psy2897 139 SKGGKVGLFGGAGVGKTVNMMELINNIAKAHS-GL-SVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMN 216 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~-dv-~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d 216 (467)
.+++.+.|.|++|+|||+|+..++........ +. .++.-+.+.. ...++...+.+. +. .. .....
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~i~~~--l~-------~~---~~~~~ 109 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID-TPYRVLADLLES--LD-------VK---VPFTG 109 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC-SHHHHHHHHTTT--TS-------CC---CCSSS
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC-CHHHHHHHHHHH--hC-------CC---CCCCC
Confidence 56889999999999999999999987654321 23 3444332211 223444444111 11 00 00011
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHHH
Q psy2897 217 EPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTL 255 (467)
Q Consensus 217 ~~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a~ 255 (467)
.+....+ -.+.+++...++.+++++|++..+..
T Consensus 110 ~~~~~~~------~~l~~~l~~~~~~~vlilDE~~~l~~ 142 (386)
T 2qby_A 110 LSIAELY------RRLVKAVRDYGSQVVIVLDEIDAFVK 142 (386)
T ss_dssp CCHHHHH------HHHHHHHHTCCSCEEEEEETHHHHHH
T ss_pred CCHHHHH------HHHHHHHhccCCeEEEEEcChhhhhc
Confidence 1111111 12234455567799999999987643
No 53
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.83 E-value=0.019 Score=60.71 Aligned_cols=40 Identities=18% Similarity=0.157 Sum_probs=32.3
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEE
Q psy2897 136 CPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVF 175 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~ 175 (467)
+.+.+|+.++|+|++|+|||||+..|+......+..+.+.
T Consensus 288 l~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 288 VEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp CCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 4688999999999999999999999998765544445443
No 54
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.74 E-value=0.0057 Score=64.93 Aligned_cols=45 Identities=27% Similarity=0.351 Sum_probs=37.5
Q ss_pred ccccccceeeeccc--ccccCceeeeecCCCCCchhhHHHHH-HHHHh
Q psy2897 123 ELLETGIKVIDLIC--PFSKGGKVGLFGGAGVGKTVNMMELI-NNIAK 167 (467)
Q Consensus 123 ~~l~TGIr~ID~l~--pigrGqr~~I~g~~g~GKt~L~~~i~-~~~~~ 167 (467)
+.+.||+.++|.+. .+.+|+.++|.|++|+|||||+.+++ .....
T Consensus 19 ~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 19 AKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp CEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred ccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 56789999998764 68899999999999999999999964 44443
No 55
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.64 E-value=0.0044 Score=55.79 Aligned_cols=29 Identities=28% Similarity=0.243 Sum_probs=24.4
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 135 ICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
|.++.+|+.++|.|++|+|||||+..++.
T Consensus 3 m~~i~~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 3 MTDDLGGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp ---CCTTEEEEEEECTTSCHHHHHHHHHT
T ss_pred ccCCCCCeEEEEECCCCCCHHHHHHHHHh
Confidence 45688999999999999999999998875
No 56
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.34 E-value=0.0099 Score=53.23 Aligned_cols=29 Identities=28% Similarity=0.393 Sum_probs=26.2
Q ss_pred cccCceeeeecCCCCCchhhHHHHHHHHH
Q psy2897 138 FSKGGKVGLFGGAGVGKTVNMMELINNIA 166 (467)
Q Consensus 138 igrGqr~~I~g~~g~GKt~L~~~i~~~~~ 166 (467)
+.+|+.++|+|++|+|||+|+..++....
T Consensus 35 ~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 35 PEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp GGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56799999999999999999999998765
No 57
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.24 E-value=0.0075 Score=55.61 Aligned_cols=29 Identities=31% Similarity=0.304 Sum_probs=23.4
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
.++.+|+.++|+|++|+|||||+..|+.-
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 37899999999999999999999988764
No 58
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.19 E-value=0.0085 Score=54.40 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=23.7
Q ss_pred cccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 138 FSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 138 igrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+|+.++|.|++|+|||||+..++..
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 457999999999999999999988764
No 59
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.07 E-value=0.079 Score=52.58 Aligned_cols=96 Identities=17% Similarity=0.226 Sum_probs=50.9
Q ss_pred ccCc--eeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCC
Q psy2897 139 SKGG--KVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMN 216 (467)
Q Consensus 139 grGq--r~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d 216 (467)
..+. .+.|.|++|+|||+|+..++........-..++.-+.. .....+++..+.+. +. .. .....
T Consensus 40 ~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~l~~~--l~-------~~---~~~~~ 106 (389)
T 1fnn_A 40 PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI-YRNFTAIIGEIARS--LN-------IP---FPRRG 106 (389)
T ss_dssp TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT-CCSHHHHHHHHHHH--TT-------CC---CCSSC
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc-CCCHHHHHHHHHHH--hC-------cc---CCCCC
Confidence 3445 79999999999999999988765322112234443332 22333444443221 11 00 00111
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHH
Q psy2897 217 EPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRY 253 (467)
Q Consensus 217 ~~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~ 253 (467)
.+...-+ -.+.+++...++.+++++|++..+
T Consensus 107 ~~~~~~~------~~l~~~l~~~~~~~vlilDE~~~l 137 (389)
T 1fnn_A 107 LSRDEFL------ALLVEHLRERDLYMFLVLDDAFNL 137 (389)
T ss_dssp CCHHHHH------HHHHHHHHHTTCCEEEEEETGGGS
T ss_pred CCHHHHH------HHHHHHHhhcCCeEEEEEECcccc
Confidence 1221111 122344455678899999999865
No 60
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.04 E-value=0.0091 Score=55.81 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=23.5
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 18 l~i~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 18 GSMNNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp ----CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred eecCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 56789999999999999999999998874
No 61
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.04 E-value=0.0098 Score=54.44 Aligned_cols=41 Identities=20% Similarity=0.140 Sum_probs=23.9
Q ss_pred ccccceeeecccccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2897 125 LETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 125 l~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+.|+--..+.+++..+|..++|.|++|+|||||+..++...
T Consensus 13 ~~~~~~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 13 LGTENLYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp ---------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCchhhHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 44444556667777889999999999999999999988653
No 62
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.01 E-value=0.11 Score=51.98 Aligned_cols=96 Identities=10% Similarity=0.111 Sum_probs=52.2
Q ss_pred cCceeee--ecCCCCCchhhHHHHHHHHHhh----CCCE-EEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEE
Q psy2897 140 KGGKVGL--FGGAGVGKTVNMMELINNIAKA----HSGL-SVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVY 212 (467)
Q Consensus 140 rGqr~~I--~g~~g~GKt~L~~~i~~~~~~~----~~dv-~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~ 212 (467)
.++.+.| .|++|+|||+|+..+++..... +.+. ++++-+.+. ....+++..+... +. .. .
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~--l~-------~~---~ 115 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNA-PNLYTILSLIVRQ--TG-------YP---I 115 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGC-CSHHHHHHHHHHH--HT-------CC---C
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCC-CCHHHHHHHHHHH--hC-------CC---C
Confidence 5667888 9999999999999998865432 1133 344443332 2334455443221 11 00 0
Q ss_pred eCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHH
Q psy2897 213 GQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYT 254 (467)
Q Consensus 213 ~t~d~~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a 254 (467)
.....+... ..-.+.+++...++.+++++|++-.+.
T Consensus 116 ~~~~~~~~~------~~~~l~~~l~~~~~~~llvlDe~~~l~ 151 (412)
T 1w5s_A 116 QVRGAPALD------ILKALVDNLYVENHYLLVILDEFQSML 151 (412)
T ss_dssp CCTTCCHHH------HHHHHHHHHHHHTCEEEEEEESTHHHH
T ss_pred CCCCCCHHH------HHHHHHHHHHhcCCeEEEEEeCHHHHh
Confidence 001112211 112233444445789999999998754
No 63
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.01 E-value=0.021 Score=52.59 Aligned_cols=29 Identities=24% Similarity=0.248 Sum_probs=25.9
Q ss_pred cccCceeeeecCCCCCchhhHHHHHHHHH
Q psy2897 138 FSKGGKVGLFGGAGVGKTVNMMELINNIA 166 (467)
Q Consensus 138 igrGqr~~I~g~~g~GKt~L~~~i~~~~~ 166 (467)
..+|+.++|.|++|+|||||+..|+....
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 47899999999999999999999887654
No 64
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.99 E-value=0.16 Score=52.88 Aligned_cols=38 Identities=24% Similarity=0.244 Sum_probs=30.8
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEE
Q psy2897 139 SKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFT 176 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~ 176 (467)
+++..+.+.|.+|+||||++..++...++.+..+.++.
T Consensus 98 ~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~ 135 (443)
T 3dm5_A 98 EKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVC 135 (443)
T ss_dssp SSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 36789999999999999999999998776544555554
No 65
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.95 E-value=0.018 Score=50.71 Aligned_cols=28 Identities=18% Similarity=0.358 Sum_probs=25.2
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHHHh
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
+|+.++|+|++|+|||+|+..++.....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 8999999999999999999999886543
No 66
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.94 E-value=0.025 Score=58.70 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=26.3
Q ss_pred CceeeeecCCCCCchhhHHHHHHHHHhhCCCE
Q psy2897 141 GGKVGLFGGAGVGKTVNMMELINNIAKAHSGL 172 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv 172 (467)
+.-+.|+|++|+|||+|+..+++.....+++.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~ 161 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDL 161 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSS
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 56799999999999999999998776554344
No 67
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.75 E-value=0.056 Score=47.28 Aligned_cols=29 Identities=31% Similarity=0.376 Sum_probs=24.6
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHHHHh
Q psy2897 139 SKGGKVGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
+.+..+.|.|++|+|||+|+..+++....
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 45677999999999999999999887643
No 68
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.75 E-value=0.02 Score=55.36 Aligned_cols=37 Identities=24% Similarity=0.447 Sum_probs=30.9
Q ss_pred eeecccccccCceeeeecCCCCCchhhHHHHHHHHHhh
Q psy2897 131 VIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKA 168 (467)
Q Consensus 131 ~ID~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~ 168 (467)
+++.+. +.+|+.++|.|++|+|||||+..++......
T Consensus 16 vl~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~ 52 (261)
T 2eyu_A 16 KVLELC-HRKMGLILVTGPTGSGKSTTIASMIDYINQT 52 (261)
T ss_dssp HHHHGG-GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH
T ss_pred HHHHHh-hCCCCEEEEECCCCccHHHHHHHHHHhCCCC
Confidence 455555 8899999999999999999999998865443
No 69
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.73 E-value=0.054 Score=53.13 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=24.8
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHHHhh
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINNIAKA 168 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~~~~ 168 (467)
.+.-+.|+|++|+|||+|+..+++.....
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 56789999999999999999999876543
No 70
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.70 E-value=0.014 Score=52.94 Aligned_cols=28 Identities=29% Similarity=0.329 Sum_probs=23.7
Q ss_pred ccccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 137 PFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 137 pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
.+.+|..++|.|++|+||||++..++..
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999988764
No 71
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.64 E-value=0.1 Score=46.76 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=22.7
Q ss_pred CceeeeecCCCCCchhhHHHHHHHHHh
Q psy2897 141 GGKVGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
...+.|.|++|+|||+|+..+++....
T Consensus 38 ~~~~ll~G~~G~GKT~l~~~l~~~~~~ 64 (226)
T 2chg_A 38 IPHLLFSGPPGTGKTATAIALARDLFG 64 (226)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhc
Confidence 345999999999999999999886543
No 72
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.63 E-value=0.015 Score=51.97 Aligned_cols=30 Identities=30% Similarity=0.253 Sum_probs=27.1
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2897 136 CPFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+.+.+|+.++|.|+.|+|||||+..|+...
T Consensus 28 l~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 457899999999999999999999998765
No 73
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.62 E-value=0.013 Score=54.76 Aligned_cols=28 Identities=29% Similarity=0.228 Sum_probs=20.2
Q ss_pred ccccCceeeeecCCCCCchhhHHHHH-HH
Q psy2897 137 PFSKGGKVGLFGGAGVGKTVNMMELI-NN 164 (467)
Q Consensus 137 pigrGqr~~I~g~~g~GKt~L~~~i~-~~ 164 (467)
.+.+|+.++|.|++|+|||||+..++ ..
T Consensus 23 ~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 23 LKSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEECCCEEEEECSCC----CHHHHHHC--
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 46789999999999999999999987 54
No 74
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.61 E-value=0.012 Score=55.99 Aligned_cols=34 Identities=18% Similarity=0.268 Sum_probs=28.4
Q ss_pred eeeecc-cccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 130 KVIDLI-CPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 130 r~ID~l-~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
.+++.+ +.+.+|+.++|.|++|+|||||+..|+.
T Consensus 19 ~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred eeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 355443 5699999999999999999999997765
No 75
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.59 E-value=0.028 Score=56.35 Aligned_cols=47 Identities=26% Similarity=0.382 Sum_probs=36.2
Q ss_pred eeeecc-cccccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEE
Q psy2897 130 KVIDLI-CPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFT 176 (467)
Q Consensus 130 r~ID~l-~pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~ 176 (467)
++++.+ +.+.+|..++|.|++|+|||||+..++.........+.|.+
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~ 90 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLA 90 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEE
Confidence 345444 45899999999999999999999999876554445666664
No 76
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.51 E-value=0.013 Score=58.23 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=28.7
Q ss_pred cccccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2897 134 LICPFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 134 ~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
.-+.+.+|++++|+|++|+|||||+..|+.-.
T Consensus 119 vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 119 WLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred ceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 44679999999999999999999999998865
No 77
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.47 E-value=0.22 Score=49.66 Aligned_cols=40 Identities=20% Similarity=0.182 Sum_probs=32.2
Q ss_pred ccccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEE
Q psy2897 137 PFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFT 176 (467)
Q Consensus 137 pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~ 176 (467)
.-.+|+.++|.|++|+||||++..++......+..+.+.+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g 164 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAA 164 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3478999999999999999999999987665545555544
No 78
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.46 E-value=0.25 Score=49.10 Aligned_cols=40 Identities=20% Similarity=0.190 Sum_probs=32.6
Q ss_pred ccccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEE
Q psy2897 137 PFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFT 176 (467)
Q Consensus 137 pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~ 176 (467)
...+|+.++|.|++|+||||++..++...+..+..+.++.
T Consensus 101 ~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 101 KENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp CTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4688999999999999999999999988766544555443
No 79
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.43 E-value=0.013 Score=52.46 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=23.0
Q ss_pred cccccCceeeeecCCCCCchhhHHH
Q psy2897 136 CPFSKGGKVGLFGGAGVGKTVNMME 160 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~ 160 (467)
+.+.+|+.++|+|++|+|||||+..
T Consensus 4 l~i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 4 LTIPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEESSEEEEEECCTTSCHHHHHHH
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHH
Confidence 4678999999999999999999994
No 80
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.43 E-value=0.03 Score=55.39 Aligned_cols=39 Identities=21% Similarity=0.292 Sum_probs=31.6
Q ss_pred ccccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEE
Q psy2897 137 PFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVF 175 (467)
Q Consensus 137 pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~ 175 (467)
.+.+|+.++|+|++|+||||++..++......+..+.+.
T Consensus 96 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~ 134 (302)
T 3b9q_A 96 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMA 134 (302)
T ss_dssp CSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 478999999999999999999999998765544444443
No 81
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.41 E-value=0.013 Score=55.35 Aligned_cols=29 Identities=28% Similarity=0.336 Sum_probs=25.9
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 135 ICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus 24 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 24 SLSVKKGEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp EEEEETTCEEEEEECTTSCHHHHHHHHTT
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35689999999999999999999997764
No 82
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.41 E-value=0.014 Score=55.53 Aligned_cols=30 Identities=23% Similarity=0.454 Sum_probs=26.5
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+.+|+.++|+|++|+|||||+..|+.-
T Consensus 25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 25 TFSIPEGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999999999987653
No 83
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=94.38 E-value=0.048 Score=57.94 Aligned_cols=43 Identities=28% Similarity=0.404 Sum_probs=30.0
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHHH---HhhCCCEEEEEEecCC
Q psy2897 139 SKGGKVGLFGGAGVGKTVNMMELINNI---AKAHSGLSVFTGVGER 181 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~~---~~~~~dv~V~~liGeR 181 (467)
+....++|.|++|+|||+|+.++++.. .....+.+.++-++..
T Consensus 145 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 145 GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 346679999999999999999987643 2223344555555554
No 84
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.36 E-value=0.28 Score=48.45 Aligned_cols=39 Identities=15% Similarity=0.103 Sum_probs=31.7
Q ss_pred cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEE
Q psy2897 138 FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFT 176 (467)
Q Consensus 138 igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~ 176 (467)
..+|..++|.|++|+||||++..++...+..+..+.++.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 578999999999999999999999987765544455444
No 85
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.28 E-value=0.015 Score=55.77 Aligned_cols=30 Identities=20% Similarity=0.327 Sum_probs=26.5
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+.+|+.++|.|++|+|||||+..|+.-
T Consensus 29 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 29 NLSIKQGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999999999987653
No 86
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.25 E-value=0.016 Score=56.09 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=27.7
Q ss_pred eee-cccccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 131 VID-LICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 131 ~ID-~l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
+++ .=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 21 vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 444 335699999999999999999999998765
No 87
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.23 E-value=0.067 Score=46.85 Aligned_cols=29 Identities=31% Similarity=0.368 Sum_probs=24.5
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHHHHh
Q psy2897 139 SKGGKVGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
..+..+.|.|++|+|||+|+..+++....
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 44667899999999999999999887543
No 88
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.23 E-value=0.28 Score=48.18 Aligned_cols=46 Identities=20% Similarity=0.059 Sum_probs=34.2
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchH
Q psy2897 139 SKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTRE 184 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~e 184 (467)
.+|..+++.|++|+||||++..++...+..+..+.++..=-.|...
T Consensus 96 ~~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a 141 (297)
T 1j8m_F 96 KIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAA 141 (297)
T ss_dssp SSSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHH
Confidence 3589999999999999999999999877655555555443344433
No 89
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.23 E-value=0.02 Score=51.48 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.8
Q ss_pred cCceeeeecCCCCCchhhHHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+|..++|.|++|+|||||+..++..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5889999999999999999998764
No 90
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.22 E-value=0.016 Score=55.74 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=28.3
Q ss_pred eeeec-ccccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 130 KVIDL-ICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 130 r~ID~-l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
.+++. =+.+.+|+.++|+|++|+|||||+..|+-
T Consensus 21 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 21 KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred eeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34443 35699999999999999999999998765
No 91
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.21 E-value=0.019 Score=54.32 Aligned_cols=29 Identities=17% Similarity=0.245 Sum_probs=24.1
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|..++|.|++|+|||||+..++..
T Consensus 20 l~i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 20 FQSMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp ---CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999988764
No 92
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.21 E-value=0.015 Score=56.72 Aligned_cols=34 Identities=24% Similarity=0.465 Sum_probs=28.4
Q ss_pred eeeecc-cccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 130 KVIDLI-CPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 130 r~ID~l-~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
.+++.+ +.+.+|+.++|.|++|+|||||+..|+.
T Consensus 22 ~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 22 HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTT
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 355443 5699999999999999999999998765
No 93
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.19 E-value=0.016 Score=56.32 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=29.0
Q ss_pred eeeecc-cccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 130 KVIDLI-CPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 130 r~ID~l-~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
.+++.+ +.+.+|+.++|+|++|+|||||+..|+.
T Consensus 25 ~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 25 ALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp EEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTS
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 455544 6799999999999999999999998775
No 94
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.17 E-value=0.019 Score=55.01 Aligned_cols=29 Identities=28% Similarity=0.249 Sum_probs=26.1
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 135 ICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 23 NLVVPKGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 35699999999999999999999998765
No 95
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.17 E-value=0.042 Score=50.32 Aligned_cols=39 Identities=21% Similarity=0.192 Sum_probs=29.6
Q ss_pred ccccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEE
Q psy2897 137 PFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVF 175 (467)
Q Consensus 137 pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~ 175 (467)
+..+|..++|.|++|+||||++..++......+..+.+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 357899999999999999999999887654333344443
No 96
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.16 E-value=0.02 Score=55.52 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=28.2
Q ss_pred eeeecc-cccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 130 KVIDLI-CPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 130 r~ID~l-~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
.+++.+ +.+.+|+.++|+|++|+|||||+..|+-
T Consensus 34 ~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 34 AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 344443 5699999999999999999999998765
No 97
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.15 E-value=0.019 Score=52.76 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=22.0
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+|+.++|.|++|+|||||+..++...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 68999999999999999999988753
No 98
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.15 E-value=0.017 Score=55.76 Aligned_cols=33 Identities=24% Similarity=0.413 Sum_probs=27.6
Q ss_pred eeec-ccccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 131 VIDL-ICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 131 ~ID~-l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
+++. =+.+.+|+.++|.|++|+|||||+..|+-
T Consensus 30 vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4443 35689999999999999999999998765
No 99
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.13 E-value=0.019 Score=58.39 Aligned_cols=35 Identities=26% Similarity=0.395 Sum_probs=29.4
Q ss_pred ceee-ecccccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 129 IKVI-DLICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 129 Ir~I-D~l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
..++ |.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus 17 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 17 TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhc
Confidence 3455 4446799999999999999999999998875
No 100
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.13 E-value=0.017 Score=55.99 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=27.6
Q ss_pred eeec-ccccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 131 VIDL-ICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 131 ~ID~-l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
+++. =+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 39 vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHc
Confidence 4443 35689999999999999999999998765
No 101
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.08 E-value=0.016 Score=54.41 Aligned_cols=28 Identities=29% Similarity=0.490 Sum_probs=25.4
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 136 CPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
+.+.+|+.++|+|++|+|||||+..|+-
T Consensus 30 l~i~~Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 30 MTIEKGNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp EEEETTCCEEEECCTTSSHHHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 5688999999999999999999998765
No 102
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.06 E-value=0.018 Score=54.92 Aligned_cols=29 Identities=17% Similarity=0.138 Sum_probs=26.1
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..|+.-
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 23 FEAQPNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEECTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999999987753
No 103
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.02 E-value=0.018 Score=54.45 Aligned_cols=30 Identities=23% Similarity=0.438 Sum_probs=26.4
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+.+|+.++|.|++|+|||||+..|+.-
T Consensus 28 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 28 NFKIERGQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 356899999999999999999999987753
No 104
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.02 E-value=0.018 Score=54.84 Aligned_cols=28 Identities=29% Similarity=0.501 Sum_probs=25.5
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 136 CPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
+.+.+|+.++|+|++|+|||||+..|+-
T Consensus 27 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 27 LKVPRGQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 5689999999999999999999997765
No 105
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.01 E-value=0.026 Score=51.86 Aligned_cols=31 Identities=13% Similarity=0.043 Sum_probs=26.6
Q ss_pred cccCceeeeecCCCCCchhhHHHHHHHHHhh
Q psy2897 138 FSKGGKVGLFGGAGVGKTVNMMELINNIAKA 168 (467)
Q Consensus 138 igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~ 168 (467)
-.+++.+.|.|++|+|||+|+..++......
T Consensus 49 ~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 49 GDGVQAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp TCSCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3478999999999999999999999876543
No 106
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.00 E-value=0.019 Score=55.83 Aligned_cols=30 Identities=27% Similarity=0.276 Sum_probs=26.5
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+.+|+.++|+|++|+|||||+..|+.-
T Consensus 39 sl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 39 TFTLYPGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 356999999999999999999999987653
No 107
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.00 E-value=0.039 Score=54.62 Aligned_cols=36 Identities=28% Similarity=0.302 Sum_probs=29.2
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEE
Q psy2897 139 SKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSV 174 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V 174 (467)
++|+.++|+|++|+|||||+..++......+..+.+
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l 135 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMF 135 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEE
Confidence 479999999999999999999999876554444443
No 108
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.99 E-value=0.019 Score=55.42 Aligned_cols=30 Identities=23% Similarity=0.222 Sum_probs=26.5
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+.+|+.++|.|++|+|||||+..|+.-
T Consensus 40 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 40 NFFIPSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 356899999999999999999999988753
No 109
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.98 E-value=0.053 Score=48.64 Aligned_cols=44 Identities=27% Similarity=0.221 Sum_probs=30.3
Q ss_pred eecccccccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEE
Q psy2897 132 IDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVF 175 (467)
Q Consensus 132 ID~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~ 175 (467)
+|.=....+|..+.|.|.+|+||||++..++......+..+.++
T Consensus 4 ~~~~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 4 LTTYKCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp ----CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 33333345788999999999999999999998765443334333
No 110
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=93.91 E-value=0.11 Score=51.73 Aligned_cols=30 Identities=7% Similarity=0.019 Sum_probs=26.6
Q ss_pred cccCceeeeecCCCCCchhhHHHHHHHHHh
Q psy2897 138 FSKGGKVGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 138 igrGqr~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
-+++..+.|+|+||+|||+++..+++....
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 478899999999999999999999987654
No 111
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.91 E-value=0.019 Score=56.11 Aligned_cols=33 Identities=30% Similarity=0.406 Sum_probs=27.6
Q ss_pred eee-cccccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 131 VID-LICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 131 ~ID-~l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
+++ .=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus 36 vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp EEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 443 335689999999999999999999998765
No 112
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.90 E-value=0.023 Score=58.18 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=29.3
Q ss_pred ceeeec-ccccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 129 IKVIDL-ICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 129 Ir~ID~-l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
..++|. =+.+.+|+.++|+|++|+|||||+..|+-
T Consensus 16 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHc
Confidence 345544 36799999999999999999999998875
No 113
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.86 E-value=0.024 Score=51.80 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=23.5
Q ss_pred cccCceeeeecCCCCCchhhHHHHHHHH
Q psy2897 138 FSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 138 igrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
..+|..++|.|++|+|||||+..++...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999887743
No 114
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.85 E-value=0.07 Score=55.60 Aligned_cols=26 Identities=23% Similarity=0.211 Sum_probs=21.8
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+...+.|+|++|+|||+|+..+++..
T Consensus 49 ~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 49 HLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 33568999999999999999888754
No 115
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.85 E-value=0.02 Score=55.01 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=26.0
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 135 ICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
=+.+.+|+.++|.|++|+|||||+..|+-
T Consensus 20 sl~i~~Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 20 SGEVRAGEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 35689999999999999999999998765
No 116
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.84 E-value=0.021 Score=55.26 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=25.7
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 136 CPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
+.+.+|+.++|+|++|+|||||+..|+-
T Consensus 28 l~i~~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 28 LVINEGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 5699999999999999999999998765
No 117
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.83 E-value=0.03 Score=51.08 Aligned_cols=29 Identities=21% Similarity=0.131 Sum_probs=24.0
Q ss_pred ccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2897 137 PFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 137 pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
.+.+|..+.|.|++|+||||++..++...
T Consensus 21 ~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 21 QSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 46689999999999999999999998754
No 118
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.80 E-value=0.021 Score=54.98 Aligned_cols=33 Identities=21% Similarity=0.451 Sum_probs=27.6
Q ss_pred eeecc-cccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 131 VIDLI-CPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 131 ~ID~l-~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
+++.+ +.+.+|+.++|+|++|+|||||+..|+.
T Consensus 20 vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp EEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTT
T ss_pred EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 44433 5689999999999999999999998765
No 119
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.80 E-value=0.024 Score=57.49 Aligned_cols=31 Identities=29% Similarity=0.468 Sum_probs=27.2
Q ss_pred ecccccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 133 DLICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 133 D~l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
|.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus 33 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 33 GVSFQIREGEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred eeEEEECCCCEEEEECCCCCcHHHHHHHHhC
Confidence 3446689999999999999999999998875
No 120
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.80 E-value=0.025 Score=57.44 Aligned_cols=33 Identities=27% Similarity=0.484 Sum_probs=28.2
Q ss_pred ee-ecccccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 131 VI-DLICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 131 ~I-D~l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
++ |.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus 18 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 18 AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHT
T ss_pred EEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHC
Confidence 44 4446799999999999999999999998875
No 121
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.77 E-value=0.047 Score=55.42 Aligned_cols=38 Identities=21% Similarity=0.320 Sum_probs=31.1
Q ss_pred ccccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEE
Q psy2897 137 PFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSV 174 (467)
Q Consensus 137 pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V 174 (467)
.+.+|+.++|+|++|+||||++..++......+..+.+
T Consensus 153 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l 190 (359)
T 2og2_A 153 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLM 190 (359)
T ss_dssp CSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEE
Confidence 57899999999999999999999999876554444443
No 122
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.74 E-value=0.18 Score=49.97 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=23.1
Q ss_pred CceeeeecCCCCCchhhHHHHHHHHH
Q psy2897 141 GGKVGLFGGAGVGKTVNMMELINNIA 166 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~~~ 166 (467)
|.-+.|+|++|+|||+|+..+++...
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 57899999999999999999988653
No 123
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.73 E-value=0.026 Score=57.39 Aligned_cols=33 Identities=18% Similarity=0.406 Sum_probs=28.0
Q ss_pred ee-ecccccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 131 VI-DLICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 131 ~I-D~l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
++ |.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus 18 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 18 ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhc
Confidence 44 3446799999999999999999999998875
No 124
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.73 E-value=0.026 Score=57.60 Aligned_cols=33 Identities=24% Similarity=0.396 Sum_probs=28.1
Q ss_pred ee-ecccccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 131 VI-DLICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 131 ~I-D~l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
++ |.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus 26 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 26 AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EEeeeEEEECCCCEEEEECCCCChHHHHHHHHHc
Confidence 44 3446799999999999999999999998875
No 125
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.65 E-value=0.026 Score=57.53 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=28.2
Q ss_pred ee-ecccccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 131 VI-DLICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 131 ~I-D~l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
++ |.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus 18 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 18 AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred EEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHc
Confidence 44 4446799999999999999999999998875
No 126
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.65 E-value=0.043 Score=54.01 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=29.7
Q ss_pred ccccCceeeeecCCCCCchhhHHHHHHHHH--hhCCCEEEEE
Q psy2897 137 PFSKGGKVGLFGGAGVGKTVNMMELINNIA--KAHSGLSVFT 176 (467)
Q Consensus 137 pigrGqr~~I~g~~g~GKt~L~~~i~~~~~--~~~~dv~V~~ 176 (467)
+..+|..++|.|++|+|||||+..++.... .....+.++.
T Consensus 76 ~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~ 117 (308)
T 1sq5_A 76 GQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELIT 117 (308)
T ss_dssp -CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEE
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEe
Confidence 348999999999999999999998876543 1223455544
No 127
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.55 E-value=0.028 Score=52.45 Aligned_cols=34 Identities=26% Similarity=0.157 Sum_probs=27.8
Q ss_pred cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCE
Q psy2897 138 FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGL 172 (467)
Q Consensus 138 igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv 172 (467)
+.+|+.++|+|++|+|||||+..|+.- .-..+.+
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I 52 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQV 52 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCee
Confidence 478999999999999999999988875 4444444
No 128
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.43 E-value=0.031 Score=56.89 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=29.4
Q ss_pred ceeeecc-cccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 129 IKVIDLI-CPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 129 Ir~ID~l-~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
+.++|.+ +.+.+|+.++|+|++|+|||||+..|+.
T Consensus 41 ~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhc
Confidence 4566544 6799999999999999999999987765
No 129
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.40 E-value=0.057 Score=49.23 Aligned_cols=29 Identities=24% Similarity=0.190 Sum_probs=25.8
Q ss_pred cccCceeeeecCCCCCchhhHHHHHHHHH
Q psy2897 138 FSKGGKVGLFGGAGVGKTVNMMELINNIA 166 (467)
Q Consensus 138 igrGqr~~I~g~~g~GKt~L~~~i~~~~~ 166 (467)
..+|+.+.|.|++|+|||||+..++....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999998764
No 130
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.39 E-value=0.035 Score=50.69 Aligned_cols=28 Identities=29% Similarity=0.142 Sum_probs=24.9
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 136 CPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
..+.+|..++|.|++|+||||++..++.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3488899999999999999999998765
No 131
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.35 E-value=0.031 Score=57.39 Aligned_cols=34 Identities=29% Similarity=0.611 Sum_probs=28.7
Q ss_pred eeeecc-cccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 130 KVIDLI-CPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 130 r~ID~l-~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
.+++.+ +.+.+|+.++|.|++|+|||||+..|+.
T Consensus 35 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 35 AILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred EEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhC
Confidence 445443 5799999999999999999999998875
No 132
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.35 E-value=0.87 Score=42.93 Aligned_cols=96 Identities=15% Similarity=0.118 Sum_probs=53.1
Q ss_pred cccCceeeeecCCCCCchhhHHHHHHHHHhh----CCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEe
Q psy2897 138 FSKGGKVGLFGGAGVGKTVNMMELINNIAKA----HSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYG 213 (467)
Q Consensus 138 igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~----~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~ 213 (467)
+.+|.-+-|.|++|+||||++..++...... +-.+.+. --.++.+..+.++.+...+-+
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~--rep~~t~~g~~ir~~l~~~~~--------------- 84 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT--REPGGTRLGETLREILLNQPM--------------- 84 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE--ESSSSSHHHHHHHHHHHHSCC---------------
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee--cCCCCChHHHHHHHHHHcCCC---------------
Confidence 3578899999999999999999999876544 3334322 222344555555555332211
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH-------HCCCcEEEEEeChhHHHHHhH
Q psy2897 214 QMNEPSGNRLRVALTGLTIAEGFR-------DEGKDVLFFIDNIYRYTLAGT 258 (467)
Q Consensus 214 t~d~~~~~r~~~~~~a~~~AE~fr-------~~g~~Vlvi~Ds~tr~a~A~r 258 (467)
.| +..+.+.+...++.+. .+|+ +||+|..+--.-|+.
T Consensus 85 ----~~--~~~~llf~a~R~~~~~~~i~p~l~~g~--~VI~DRy~~S~~ayq 128 (227)
T 3v9p_A 85 ----DL--ETEALLMFAGRREHLALVIEPALARGD--WVVSDRFTDATFAYQ 128 (227)
T ss_dssp ----CH--HHHHHHHHHHHHHHHHHTHHHHHHTTC--EEEEECCHHHHHHHH
T ss_pred ----CH--HHHHHHHHHHHHHHHHHHHHHHHHcCC--EEEEeccHhHHHHHh
Confidence 11 1222333344555443 2454 678898876666665
No 133
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.33 E-value=0.17 Score=50.17 Aligned_cols=29 Identities=24% Similarity=0.203 Sum_probs=24.4
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHHHHh
Q psy2897 139 SKGGKVGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
..+..+.|.|++|+|||+|+..+++....
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44567999999999999999999887543
No 134
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.33 E-value=0.23 Score=51.55 Aligned_cols=44 Identities=20% Similarity=0.064 Sum_probs=33.5
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCc
Q psy2897 139 SKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERT 182 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~ 182 (467)
.++..+.+.|++|+||||++..++...++.+..+.++.+=-.|.
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~ 138 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRP 138 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccch
Confidence 46889999999999999999999998776655555554333343
No 135
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.32 E-value=0.022 Score=57.54 Aligned_cols=30 Identities=23% Similarity=0.329 Sum_probs=26.7
Q ss_pred cccccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 134 LICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 134 ~l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus 19 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 19 LSLKVESGEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp EEEEECTTCEEEEECCCTHHHHHHHHHHHT
T ss_pred eEEEEcCCCEEEEECCCCccHHHHHHHHHc
Confidence 345699999999999999999999998875
No 136
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.30 E-value=0.044 Score=49.38 Aligned_cols=28 Identities=25% Similarity=0.265 Sum_probs=24.4
Q ss_pred ccccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 137 PFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 137 pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+..+|.+++|.|++|+||||++..++..
T Consensus 6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 6 EQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4567899999999999999999988764
No 137
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.24 E-value=0.02 Score=51.98 Aligned_cols=33 Identities=27% Similarity=0.345 Sum_probs=28.5
Q ss_pred eeeecccccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 130 KVIDLICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 130 r~ID~l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
.+++. +++.+|.+++|+|++|+|||||+..++.
T Consensus 16 ~~l~~-~~~~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 16 PDIRH-LPSDTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SSGGG-SSCSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCHhH-CCCCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 45655 8999999999999999999999987654
No 138
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.21 E-value=0.033 Score=51.17 Aligned_cols=26 Identities=31% Similarity=0.324 Sum_probs=23.9
Q ss_pred CceeeeecCCCCCchhhHHHHHHHHH
Q psy2897 141 GGKVGLFGGAGVGKTVNMMELINNIA 166 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~~~ 166 (467)
|++++|+|++|+|||||+..++....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc
Confidence 78999999999999999999998765
No 139
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.19 E-value=0.035 Score=50.15 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=21.6
Q ss_pred CceeeeecCCCCCchhhHHHHHHHH
Q psy2897 141 GGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
|..++|.|++|+|||||+.+++...
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4678999999999999999988643
No 140
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.11 E-value=0.041 Score=54.61 Aligned_cols=30 Identities=23% Similarity=0.197 Sum_probs=26.3
Q ss_pred ccccCceeeeecCCCCCchhhHHHHHHHHH
Q psy2897 137 PFSKGGKVGLFGGAGVGKTVNMMELINNIA 166 (467)
Q Consensus 137 pigrGqr~~I~g~~g~GKt~L~~~i~~~~~ 166 (467)
.+.+|..++|.|++|+|||||+..|+.-..
T Consensus 86 ~~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 86 DRPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp SSCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 378999999999999999999998887543
No 141
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=93.09 E-value=0.095 Score=55.68 Aligned_cols=52 Identities=17% Similarity=0.216 Sum_probs=35.0
Q ss_pred CceeeeecCCCCCchhhHHHHHH---HHHhhCCCEEEEEEecCCc-hHHHHHHHHH
Q psy2897 141 GGKVGLFGGAGVGKTVNMMELIN---NIAKAHSGLSVFTGVGERT-REGNDFYHEM 192 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~---~~~~~~~dv~V~~liGeR~-~ev~e~~~~~ 192 (467)
...++|.|..|+|||+|+..+++ ...+.+-+..+++-+.+.. ....++...+
T Consensus 152 ~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 46789999999999999998885 2233345677777666643 2344444443
No 142
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.04 E-value=0.04 Score=51.81 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=23.0
Q ss_pred cccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 138 FSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 138 igrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+-+|+.++|.|++|+|||||+..++..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 568999999999999999999988764
No 143
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.02 E-value=0.044 Score=48.51 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=23.2
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 139 SKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
-+|..++|.|++|+||||++..++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 46889999999999999999988764
No 144
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.02 E-value=0.032 Score=54.84 Aligned_cols=29 Identities=24% Similarity=0.485 Sum_probs=26.0
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|+|++|+|||||+..|+.-
T Consensus 59 l~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 59 FKIERGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 56899999999999999999999987653
No 145
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.00 E-value=0.075 Score=48.36 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=27.9
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEE
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVF 175 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~ 175 (467)
+|+-..|.|++|+||||++.+++++....+..+.++
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 478889999999999999999998765543344443
No 146
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.96 E-value=0.042 Score=48.39 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=22.0
Q ss_pred cCceeeeecCCCCCchhhHHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
.|..++|.|++|+|||||+..++..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999988764
No 147
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.93 E-value=0.045 Score=50.43 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=23.2
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 139 SKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
.+|..++|.|++|+|||||+..++..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 47889999999999999999988764
No 148
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.91 E-value=0.036 Score=53.72 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=24.9
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+. |+.++|.|++|+|||||+..|+--
T Consensus 26 l~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 26 LEVN-GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEC-SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEC-CEEEEEECCCCCCHHHHHHHHhCC
Confidence 4578 999999999999999999988753
No 149
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.88 E-value=0.023 Score=57.52 Aligned_cols=30 Identities=27% Similarity=0.482 Sum_probs=26.6
Q ss_pred cccccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 134 LICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 134 ~l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus 24 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 24 VNINIENGERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp EEEEECTTCEEEEECSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCEEEEECCCCCcHHHHHHHHhC
Confidence 345689999999999999999999998875
No 150
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.82 E-value=0.054 Score=50.35 Aligned_cols=29 Identities=24% Similarity=0.369 Sum_probs=24.1
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+|.-+|..+.|.|++|+|||||+..++..
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 34558999999999999999999988764
No 151
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.80 E-value=0.026 Score=56.03 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=29.4
Q ss_pred ceeeecc-cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 129 IKVIDLI-CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 129 Ir~ID~l-~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
-.+++.+ +.+.+|++++|+|++|+|||||+..|+.-
T Consensus 67 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcC
Confidence 3455444 57999999999999999999999887753
No 152
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.76 E-value=0.1 Score=47.36 Aligned_cols=35 Identities=17% Similarity=0.165 Sum_probs=27.7
Q ss_pred cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCE
Q psy2897 138 FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGL 172 (467)
Q Consensus 138 igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv 172 (467)
.-+|..+.|.|++|+||||++..++......+-++
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 34688999999999999999999998654433334
No 153
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.61 E-value=0.056 Score=49.45 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=24.4
Q ss_pred cccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 138 FSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 138 igrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+|..+.|.|++|+|||||+..++..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999999999988764
No 154
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.53 E-value=0.056 Score=48.12 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=23.2
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+|..+.|.|++|+||||++..++...
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999999988653
No 155
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=92.52 E-value=0.022 Score=56.59 Aligned_cols=32 Identities=22% Similarity=0.291 Sum_probs=29.1
Q ss_pred eecccccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 132 IDLICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 132 ID~l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
+|.|+++-+|+.++|+|++|+|||||+..|+.
T Consensus 164 ~~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 164 LADIIPHFQDKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp CTTTGGGGTTSEEEEEESHHHHHHHHHHHHCC
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHHHHhcc
Confidence 67788999999999999999999999998764
No 156
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.50 E-value=0.26 Score=44.48 Aligned_cols=25 Identities=28% Similarity=0.210 Sum_probs=21.9
Q ss_pred eeeeecCCCCCchhhHHHHHHHHHh
Q psy2897 143 KVGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
.+.|.|++|+|||+|+..+++....
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 6899999999999999999886543
No 157
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.49 E-value=0.05 Score=48.86 Aligned_cols=23 Identities=30% Similarity=0.304 Sum_probs=21.0
Q ss_pred CceeeeecCCCCCchhhHHHHHH
Q psy2897 141 GGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
|+.++|.|++|+|||||+..++.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 67889999999999999999875
No 158
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.43 E-value=0.11 Score=47.03 Aligned_cols=27 Identities=37% Similarity=0.482 Sum_probs=23.6
Q ss_pred ceeeeecCCCCCchhhHHHHHHHHHhh
Q psy2897 142 GKVGLFGGAGVGKTVNMMELINNIAKA 168 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~~~~~ 168 (467)
..+.|+|++|+|||+|+..++......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 789999999999999999998876543
No 159
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.43 E-value=0.094 Score=46.53 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=23.2
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINNIA 166 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~~ 166 (467)
+|..+.|.|++|+||||++..++....
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999988654
No 160
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.43 E-value=0.11 Score=47.09 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=25.8
Q ss_pred cccCceeeeecCCCCCchhhHHHHHHHHHhh
Q psy2897 138 FSKGGKVGLFGGAGVGKTVNMMELINNIAKA 168 (467)
Q Consensus 138 igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~ 168 (467)
.-+|..+.|.|++|+||||++..++......
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4468889999999999999999999865443
No 161
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.41 E-value=0.064 Score=57.22 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=28.6
Q ss_pred eeecccccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 131 VIDLICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 131 ~ID~l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
+++.+..+.+|++++|+|++|+|||||+..|+-
T Consensus 37 ~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 37 VLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHHHHHHHT
T ss_pred cccCcCcCCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 566665689999999999999999999998764
No 162
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.38 E-value=0.056 Score=49.00 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.7
Q ss_pred eeeeecCCCCCchhhHHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+++|.|++|+|||||+..|+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999988754
No 163
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.27 E-value=0.69 Score=45.18 Aligned_cols=38 Identities=18% Similarity=0.059 Sum_probs=31.2
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEE
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTG 177 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~l 177 (467)
+|+.+++.|++|+||||++..++...+..+..+.+...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 89999999999999999999999887665445555443
No 164
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=92.17 E-value=0.39 Score=45.63 Aligned_cols=25 Identities=24% Similarity=0.093 Sum_probs=21.8
Q ss_pred cCceeeeecCCCCCchhhHHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
....+.|.|++|+|||+|+..+++.
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4457999999999999999988875
No 165
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.10 E-value=0.69 Score=47.83 Aligned_cols=38 Identities=18% Similarity=0.059 Sum_probs=31.2
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEE
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTG 177 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~l 177 (467)
+|..+.+.|++|+||||++..++...+..+..+.++.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 78999999999999999999999987765445555543
No 166
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.10 E-value=0.062 Score=51.22 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=25.8
Q ss_pred ecccccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 133 DLICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 133 D~l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
|.=+.+.+ +.++|+|++|+|||||+..|+.
T Consensus 17 ~isl~i~~-e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 17 NVDFEMGR-DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp EEEEEECS-SEEEEECCTTSSHHHHHHHHHT
T ss_pred eeEEEECC-EEEEEECCCCCCHHHHHHHHhC
Confidence 34456889 9999999999999999998775
No 167
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.08 E-value=0.063 Score=50.60 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=22.7
Q ss_pred cCceeeeecCCCCCchhhHHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
++.+++|+|++|+|||||+..++..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999998864
No 168
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.02 E-value=0.055 Score=56.68 Aligned_cols=34 Identities=26% Similarity=0.275 Sum_probs=28.1
Q ss_pred cccccccCceeeeecCCCCCchhhHHHHHHHHHh
Q psy2897 134 LICPFSKGGKVGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 134 ~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
.=+.+.+|++++|+|++|+|||||+..|+.-...
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p 164 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALK 164 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHH
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhCcccc
Confidence 3345779999999999999999999988875433
No 169
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=91.98 E-value=0.063 Score=52.00 Aligned_cols=26 Identities=35% Similarity=0.385 Sum_probs=22.2
Q ss_pred ccccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 137 PFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 137 pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
.+.+| ++|+|++|+|||+|+..++..
T Consensus 42 ~~~~G--vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 42 VTPAG--VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp CCCSE--EEEESSTTSCHHHHHHHHHHH
T ss_pred CCCCe--EEEECCCCCcHHHHHHHHHHH
Confidence 45566 999999999999999988764
No 170
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.97 E-value=0.071 Score=49.04 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=21.7
Q ss_pred CceeeeecCCCCCchhhHHHHHHH
Q psy2897 141 GGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+++|.|++|+||||++..++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999988764
No 171
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=91.97 E-value=0.064 Score=50.57 Aligned_cols=26 Identities=38% Similarity=0.461 Sum_probs=22.3
Q ss_pred ccccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 137 PFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 137 pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
.+.+| ++|+|++|+|||+|+..++..
T Consensus 47 ~~~~g--~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 47 RIPKG--VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp CCCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCe--EEEECCCCCCHHHHHHHHHHH
Confidence 35566 999999999999999988864
No 172
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=91.94 E-value=0.044 Score=53.93 Aligned_cols=32 Identities=31% Similarity=0.358 Sum_probs=29.5
Q ss_pred eeecccccccCceeeeecCCCCCchhhHHHHH
Q psy2897 131 VIDLICPFSKGGKVGLFGGAGVGKTVNMMELI 162 (467)
Q Consensus 131 ~ID~l~pigrGqr~~I~g~~g~GKt~L~~~i~ 162 (467)
-+|.|..+-+|+..++.|++|+|||||+..|+
T Consensus 155 gi~~L~~~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 155 GIDELVDYLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp THHHHHHHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred CHHHHHhhccCcEEEEECCCCCCHHHHHHHHH
Confidence 37888888999999999999999999999887
No 173
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.84 E-value=0.081 Score=57.34 Aligned_cols=33 Identities=24% Similarity=0.396 Sum_probs=28.6
Q ss_pred eeecccccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 131 VIDLICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 131 ~ID~l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
.++.+..+.+|+.++|+|++|+|||||+..|+-
T Consensus 93 ~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 93 KLHRLPTPRPGQVLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHHHHHHHT
T ss_pred eecCCCCCCCCCEEEEECCCCChHHHHHHHHhc
Confidence 456666789999999999999999999998764
No 174
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=91.79 E-value=0.14 Score=48.29 Aligned_cols=43 Identities=21% Similarity=0.225 Sum_probs=31.7
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEE-EEecCC
Q psy2897 139 SKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVF-TGVGER 181 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~-~liGeR 181 (467)
.+|+-+.|.|++|+||||++.+++.+....+..+.++ ...+.|
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r 53 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR 53 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCch
Confidence 5788999999999999999999999876554345444 244444
No 175
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.78 E-value=0.24 Score=51.05 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.8
Q ss_pred eeeecCCCCCchhhHHHHHHHH
Q psy2897 144 VGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 144 ~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
++++||||||||.|+..+|...
T Consensus 185 vLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 185 VILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp EEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEeCCCCCCHHHHHHHHHHhh
Confidence 8999999999999999888764
No 176
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.76 E-value=0.062 Score=54.02 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=24.8
Q ss_pred ccc--CceeeeecCCCCCchhhHHHHHHH
Q psy2897 138 FSK--GGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 138 igr--Gqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+ |++.+|+|++|+|||||+..|+..
T Consensus 165 v~~~lg~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 165 ARPFFAKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp TGGGTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred HHHhhhCeEEEECCCCCCHHHHHHHHHHH
Confidence 677 999999999999999999998874
No 177
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.73 E-value=0.15 Score=51.25 Aligned_cols=36 Identities=28% Similarity=0.342 Sum_probs=29.6
Q ss_pred CceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEE
Q psy2897 141 GGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFT 176 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~ 176 (467)
+.+++|.|.+|+|||||+..++.........+.|++
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~ 109 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLA 109 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEe
Confidence 789999999999999999999986655445566665
No 178
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.70 E-value=0.14 Score=51.10 Aligned_cols=40 Identities=15% Similarity=0.204 Sum_probs=33.2
Q ss_pred ccccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEE
Q psy2897 137 PFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFT 176 (467)
Q Consensus 137 pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~ 176 (467)
...+|.+++|.|.+|+|||||+..++......+..+.|+.
T Consensus 52 ~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~ 91 (341)
T 2p67_A 52 YCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIA 91 (341)
T ss_dssp GCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 4789999999999999999999999887655555666664
No 179
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.57 E-value=0.14 Score=51.96 Aligned_cols=31 Identities=26% Similarity=0.438 Sum_probs=27.5
Q ss_pred cccCceeeeecCCCCCchhhHHHHHHHHHhh
Q psy2897 138 FSKGGKVGLFGGAGVGKTVNMMELINNIAKA 168 (467)
Q Consensus 138 igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~ 168 (467)
+.+|+.++|.|++|+|||||+..++......
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 6789999999999999999999999876543
No 180
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.51 E-value=0.079 Score=50.46 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=23.5
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 139 SKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
.+|..++|.|++|+|||||+..++..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999998864
No 181
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.47 E-value=0.18 Score=44.83 Aligned_cols=27 Identities=37% Similarity=0.437 Sum_probs=24.1
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINNIA 166 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~~ 166 (467)
+|..++|.|++|+||||++..++....
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 688999999999999999999987653
No 182
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=91.41 E-value=0.19 Score=52.18 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=22.5
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
.+..++++|+||+|||+|+..+++..
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 34569999999999999999998865
No 183
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.39 E-value=0.18 Score=47.88 Aligned_cols=154 Identities=17% Similarity=0.207 Sum_probs=83.3
Q ss_pred cCc-eeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCc-hHHHHHHHHHHhhcccCCCCCCCceEEEEE-----
Q psy2897 140 KGG-KVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERT-REGNDFYHEMIEAKVVNLDKPEKSKVSMVY----- 212 (467)
Q Consensus 140 rGq-r~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~-~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~----- 212 (467)
||. ++.+.|.+|+|||+++..++...++.+.++ +++.+...+ .+.+.++..+.. .. +.++..
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V-~v~d~D~q~~~~~~al~~gl~~---~~-------~~~~~~~~~~~ 72 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRV-MAGVVETHGRAETEALLNGLPQ---QP-------LLRTEYRGMTL 72 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCE-EEEECCCTTCHHHHHHHTTSCB---CC-------CEEEEETTEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCE-EEEEeCCCCChhHHHHhcCccc---cC-------cceeecCCccc
Confidence 443 577889999999999999999877654444 344555433 344455444321 11 222221
Q ss_pred eCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChhHHHHHhHHHHHhcCCCCCCCCCcCchhHHHHHHHHHhcCCC
Q psy2897 213 GQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTK 292 (467)
Q Consensus 213 ~t~d~~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~tr~a~A~reis~~~ge~p~~~gyp~~~f~~l~~l~ERag~~~ 292 (467)
...+ .... +.. .. -++|+|.+-. .|....-.+..|.++..++++
T Consensus 73 ~e~~------l~~~---------L~~-~p-dlvIVDElG~--------------~~~~~~r~~~~~qDV~~~l~s----- 116 (228)
T 2r8r_A 73 EEMD------LDAL---------LKA-AP-SLVLVDELAH--------------TNAPGSRHTKRWQDIQELLAA----- 116 (228)
T ss_dssp EECC------HHHH---------HHH-CC-SEEEESCTTC--------------BCCTTCSSSBHHHHHHHHHHT-----
T ss_pred cccc------HHHH---------Hhc-CC-CEEEEeCCCC--------------CCcccchhHHHHHHHHHHHcC-----
Confidence 1122 1111 111 23 4677787652 122222335678888777754
Q ss_pred CCceeEEEEEEec-------------CCCCCCCcccccccccceEEE-------eehhhhhcCCCCcccC
Q psy2897 293 KGSITSIQAVYVP-------------ADDLTDPSPATTFAHLDSTVV-------LSRDIASLGIYPAIDP 342 (467)
Q Consensus 293 ~GSiT~~~tv~~~-------------~~d~~dpi~~~~~~i~dG~iv-------Lsr~La~~g~~PAID~ 342 (467)
| +..+.|+-+. +-...+-|||.++...|--.+ |-+.|++-.+|++-.+
T Consensus 117 -g-idVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a~~v~lvD~~p~~l~~rl~~g~vy~~~~~ 184 (228)
T 2r8r_A 117 -G-IDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEAFDLVLIDLPPRELLERLRDGKVYVPEQA 184 (228)
T ss_dssp -T-CEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTCSEEEEBCCCHHHHHHHHHTTCCCCTTCC
T ss_pred -C-CCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhCCeEEEecCCHHHHHHHHHCCCccChhHH
Confidence 2 4555555533 224457788888777764333 1344666667765433
No 184
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.38 E-value=0.13 Score=46.33 Aligned_cols=27 Identities=30% Similarity=0.309 Sum_probs=23.8
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINNIA 166 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~~ 166 (467)
+|..+.|.|++|+||||++..++....
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 577899999999999999999988653
No 185
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.34 E-value=0.085 Score=57.16 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=28.8
Q ss_pred eeecccccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 131 VIDLICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 131 ~ID~l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
+++.+..+.+|+.++|+|++|+|||||+..|+-
T Consensus 107 ~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~G 139 (607)
T 3bk7_A 107 VLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAG 139 (607)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHHHHHHTT
T ss_pred eeCCCCCCCCCCEEEEECCCCChHHHHHHHHhC
Confidence 566666789999999999999999999997764
No 186
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=91.31 E-value=0.34 Score=47.77 Aligned_cols=24 Identities=29% Similarity=0.257 Sum_probs=21.1
Q ss_pred eeeeecCCCCCchhhHHHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINNIA 166 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~~~ 166 (467)
-+.|.|++|+|||+++..+++...
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 479999999999999999988653
No 187
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.15 E-value=0.11 Score=46.03 Aligned_cols=27 Identities=33% Similarity=0.233 Sum_probs=23.6
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHHH
Q psy2897 139 SKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
.++..+.|.|++|+||||++..++...
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999988653
No 188
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.05 E-value=1.1 Score=47.40 Aligned_cols=39 Identities=18% Similarity=0.172 Sum_probs=29.6
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEE
Q psy2897 139 SKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTG 177 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~l 177 (467)
.+..++.|.|.+|+||||++..++...++.+..+.++..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 456689999999999999999999887665445655543
No 189
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.05 E-value=0.15 Score=52.89 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=20.0
Q ss_pred eeeecCCCCCchhhHHHHHHHH
Q psy2897 144 VGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 144 ~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
++++||||||||.|+..+|...
T Consensus 209 iLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp EEEESCTTTTHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999888764
No 190
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=91.02 E-value=0.091 Score=50.42 Aligned_cols=27 Identities=37% Similarity=0.434 Sum_probs=22.6
Q ss_pred ccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2897 137 PFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 137 pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
.+.+| ++|+|++|+|||+|+..++...
T Consensus 71 ~~~~g--vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 71 RIPKG--VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CCCCE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCe--EEEECCCcChHHHHHHHHHHHc
Confidence 35566 9999999999999999888653
No 191
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=91.02 E-value=0.67 Score=44.98 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=23.1
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHHH
Q psy2897 139 SKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
..+..++|+|++|+|||+|+..++...
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 456779999999999999999888753
No 192
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.02 E-value=0.19 Score=50.73 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=26.4
Q ss_pred cccCceeeeecCCCCCchhhHHHHHHHHHhh
Q psy2897 138 FSKGGKVGLFGGAGVGKTVNMMELINNIAKA 168 (467)
Q Consensus 138 igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~ 168 (467)
..+|+.++|.|++|+|||||+..++......
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence 4567799999999999999999988866544
No 193
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=91.00 E-value=0.56 Score=54.04 Aligned_cols=50 Identities=12% Similarity=0.044 Sum_probs=32.8
Q ss_pred CceeeeecCCCCCchhhHHHHHHH--HHhhCCCEEEEEEecCCchHHHHHHHH
Q psy2897 141 GGKVGLFGGAGVGKTVNMMELINN--IAKAHSGLSVFTGVGERTREGNDFYHE 191 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~--~~~~~~dv~V~~liGeR~~ev~e~~~~ 191 (467)
...++|.|++|+|||||+.++++. +....++-++++-+++... ...+...
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d-~~~IL~~ 201 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS-PETVLEM 201 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSS-HHHHHHH
T ss_pred CeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCC-HHHHHHH
Confidence 467899999999999999998853 2222233356666676554 3334333
No 194
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=90.99 E-value=0.58 Score=46.77 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.1
Q ss_pred ceeeeecCCCCCchhhHHHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
..++|+|++|+|||+|+..+++..
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh
Confidence 358999999999999999988764
No 195
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.94 E-value=0.29 Score=50.92 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=20.3
Q ss_pred eeeeecCCCCCchhhHHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
-++++||||||||.|+..+|...
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 38999999999999999888764
No 196
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=90.92 E-value=0.78 Score=42.48 Aligned_cols=109 Identities=11% Similarity=0.082 Sum_probs=59.7
Q ss_pred eecccccccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEe-c-CCchHHHHHHHHHHhhcccCCCCCCCceEE
Q psy2897 132 IDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGV-G-ERTREGNDFYHEMIEAKVVNLDKPEKSKVS 209 (467)
Q Consensus 132 ID~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~li-G-eR~~ev~e~~~~~~~~~~~~~~~~~~~~~v 209 (467)
.+...+.-+ ..+.++.++|.||||++.-++...+..+..|.|+-++ | -...|. ++++.+. +.-+.-+. .
T Consensus 20 ~~~~~~~~~-g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~-~~l~~L~----v~~~~~g~-g-- 90 (196)
T 1g5t_A 20 RVAQAQEER-GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGER-NLLEPHG----VEFQVMAT-G-- 90 (196)
T ss_dssp -------CC-CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHH-HHHGGGT----CEEEECCT-T--
T ss_pred hhhhccccC-ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHH-HHHHhCC----cEEEEccc-c--
Confidence 344444545 5799999999999999999998876665567776544 3 222222 3444441 10000000 0
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChh
Q psy2897 210 MVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIY 251 (467)
Q Consensus 210 vv~~t~d~~~~~r~~~~~~a~~~AE~fr~~g~~Vlvi~Ds~t 251 (467)
+.-..+........+..++..+......|+.-|||+|.++
T Consensus 91 --f~~~~~~~~~~~~~a~~~l~~a~~~l~~~~yDlvILDEi~ 130 (196)
T 1g5t_A 91 --FTWETQNREADTAACMAVWQHGKRMLADPLLDMVVLDELT 130 (196)
T ss_dssp --CCCCGGGHHHHHHHHHHHHHHHHHHTTCTTCSEEEEETHH
T ss_pred --cccCCCCcHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 0111122233455666777777666656777788889986
No 197
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=90.91 E-value=0.2 Score=49.17 Aligned_cols=39 Identities=26% Similarity=0.352 Sum_probs=30.5
Q ss_pred cccCceeeeecCCCCCchhhHHHHHHHHHh-hCCCEEEEE
Q psy2897 138 FSKGGKVGLFGGAGVGKTVNMMELINNIAK-AHSGLSVFT 176 (467)
Q Consensus 138 igrGqr~~I~g~~g~GKt~L~~~i~~~~~~-~~~dv~V~~ 176 (467)
..+|+.+++.|+.|+||||++..++...+. .+..+.++.
T Consensus 102 ~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 102 PIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp CCCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 357999999999999999999999987664 333455444
No 198
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.85 E-value=0.24 Score=51.49 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.1
Q ss_pred eeeeecCCCCCchhhHHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
-++++||||||||.|+..+|...
T Consensus 217 GvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eeEEECcCCCCHHHHHHHHHHHh
Confidence 48999999999999999888764
No 199
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=90.81 E-value=0.12 Score=59.08 Aligned_cols=41 Identities=29% Similarity=0.492 Sum_probs=29.4
Q ss_pred CceeeeecCCCCCchhhHHHHHHHHH--h-hCCCEEEEEEecCC
Q psy2897 141 GGKVGLFGGAGVGKTVNMMELINNIA--K-AHSGLSVFTGVGER 181 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~~~--~-~~~dv~V~~liGeR 181 (467)
-..++|.|..|+|||+|+.+++++.. + ...+.++++-+++.
T Consensus 147 ~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~ 190 (1249)
T 3sfz_A 147 PGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ 190 (1249)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC
T ss_pred CCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc
Confidence 34688999999999999999887532 1 13455666766653
No 200
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=90.76 E-value=0.12 Score=45.31 Aligned_cols=24 Identities=29% Similarity=0.246 Sum_probs=21.7
Q ss_pred ceeeeecCCCCCchhhHHHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
|.++|.|++|+||||++..++...
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 789999999999999999988753
No 201
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=90.76 E-value=0.051 Score=53.35 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=29.2
Q ss_pred eeecccccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 131 VIDLICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 131 ~ID~l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
-||-++.+-+|+..+|.|++|+|||||+..|+.
T Consensus 159 gv~~lf~~l~geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 159 GIEELKEYLKGKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp THHHHHHHHSSSEEEEECSTTSSHHHHHHHHST
T ss_pred CHHHHHHHhcCCeEEEECCCCCcHHHHHHHhcc
Confidence 377788888999999999999999999987764
No 202
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=90.71 E-value=0.38 Score=47.56 Aligned_cols=25 Identities=12% Similarity=0.112 Sum_probs=21.9
Q ss_pred eeeeecCCCCCchhhHHHHHHHHHh
Q psy2897 143 KVGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
-.++.|++|+|||+++..+++....
T Consensus 26 a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 26 ALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred eEEEECCCCchHHHHHHHHHHHHhC
Confidence 4899999999999999999987653
No 203
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=90.70 E-value=0.12 Score=45.11 Aligned_cols=23 Identities=17% Similarity=0.047 Sum_probs=20.1
Q ss_pred eeeeecCCCCCchhhHHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
.+.|.|++|+||||++..++...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999988653
No 204
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.67 E-value=0.21 Score=49.22 Aligned_cols=29 Identities=21% Similarity=0.469 Sum_probs=25.3
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHHH-hh
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINNIA-KA 168 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~~-~~ 168 (467)
.++.+.|+|++|+|||.|+..+++... ..
T Consensus 151 ~~~~lll~G~~GtGKT~La~aia~~~~~~~ 180 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLLAAMAHELSEKK 180 (308)
T ss_dssp SCCEEEEECSTTSSHHHHHHHHHHHHHHHS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 368899999999999999999998766 44
No 205
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=90.64 E-value=0.086 Score=56.57 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=27.3
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2897 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
=+.+.+|+.++|.|++|+|||||+..++.-.
T Consensus 363 ~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 363 SFSIPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568999999999999999999999887743
No 206
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=90.59 E-value=0.066 Score=54.33 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=27.1
Q ss_pred eecccccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 132 IDLICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 132 ID~l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
++.+....+|+.++|+|++|+|||||+..|+.
T Consensus 206 l~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 206 LKPLEEALTGRISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp HHHHHHHHTTSEEEEECCTTSSHHHHHHHHHC
T ss_pred HHHHHHhcCCCEEEEECCCCccHHHHHHHHhc
Confidence 45566667899999999999999999987764
No 207
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=90.58 E-value=0.22 Score=45.01 Aligned_cols=34 Identities=15% Similarity=0.097 Sum_probs=26.5
Q ss_pred eeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEE
Q psy2897 143 KVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFT 176 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~ 176 (467)
.++|.|.+|+|||||+..++......+-.+.++-
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 5789999999999999999987665433455553
No 208
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=90.50 E-value=0.11 Score=45.96 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.2
Q ss_pred cCceeeeecCCCCCchhhHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
+|.+++|+|.+|+|||+|+..++.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999998865
No 209
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.36 E-value=0.37 Score=42.92 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=21.5
Q ss_pred eeeeecCCCCCchhhHHHHHHHHHh
Q psy2897 143 KVGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
.++|.|++|+||||++..++.....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999886543
No 210
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=90.32 E-value=0.22 Score=44.11 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=21.3
Q ss_pred eeeeecCCCCCchhhHHHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINNIA 166 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~~~ 166 (467)
.+.|.|++|+||||++..++....
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999988654
No 211
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.25 E-value=0.13 Score=47.05 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.3
Q ss_pred eeeeecCCCCCchhhHHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+++|.|++|+||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999987653
No 212
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.24 E-value=2.1 Score=39.72 Aligned_cols=51 Identities=20% Similarity=0.148 Sum_probs=34.2
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEM 192 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~ 192 (467)
+|.-+.|.|++|+||||++..++......+-.+.+.-- -.+.++.+.++.+
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~--p~~~~~g~~i~~~ 55 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTRE--PGGTPLAERIREL 55 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEES--SCSSHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccC--CCCCHHHHHHHHH
Confidence 68889999999999999999999876544333332221 1234555555554
No 213
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.09 E-value=0.14 Score=46.98 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=19.6
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+++|.|++|+||||++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988764
No 214
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=89.92 E-value=0.16 Score=45.09 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=21.8
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
++..+.|.|++|+||||++..++...
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999988653
No 215
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=89.92 E-value=0.068 Score=53.96 Aligned_cols=30 Identities=27% Similarity=0.317 Sum_probs=26.4
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2897 136 CPFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+.+.+|+.++|.|++|+|||||+..++...
T Consensus 170 ~~i~~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 170 RAVQLERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HHHHTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred HHHhcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 347899999999999999999999888743
No 216
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=89.87 E-value=0.16 Score=45.33 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=23.6
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHHH
Q psy2897 139 SKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
.++..+.|.|++|+||||++..++...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999988753
No 217
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=89.87 E-value=0.59 Score=45.95 Aligned_cols=53 Identities=13% Similarity=0.015 Sum_probs=36.2
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHHHh---hCCCEEEEEEec-CCc-hHHHHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINNIAK---AHSGLSVFTGVG-ERT-REGNDFYHEM 192 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~~~---~~~dv~V~~liG-eR~-~ev~e~~~~~ 192 (467)
+..-..+.|++|+|||+++..+++.+.. .+.|+..+-.-| +++ .+++++++.+
T Consensus 17 ~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~ 74 (305)
T 2gno_A 17 EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFL 74 (305)
T ss_dssp SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHH
Confidence 3457899999999999999999875321 256776665443 222 3566666665
No 218
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=89.85 E-value=0.16 Score=44.69 Aligned_cols=24 Identities=25% Similarity=0.192 Sum_probs=21.2
Q ss_pred CceeeeecCCCCCchhhHHHHHHH
Q psy2897 141 GGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
|..+.|.|.+|+||||++..++..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 567899999999999999998764
No 219
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=89.84 E-value=0.22 Score=45.58 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=18.5
Q ss_pred eeeecCCCCCchhhHHHHHHH
Q psy2897 144 VGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 144 ~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.|.|++|+|||+++.+++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999988753
No 220
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.80 E-value=0.15 Score=45.86 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=22.5
Q ss_pred cCceeeeecCCCCCchhhHHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+|..+.|.|++|+||||++..++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 6788999999999999999988764
No 221
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=89.74 E-value=0.17 Score=44.91 Aligned_cols=25 Identities=28% Similarity=0.187 Sum_probs=21.9
Q ss_pred CceeeeecCCCCCchhhHHHHHHHH
Q psy2897 141 GGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+..+.|.|++|+||||++..++...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999999998754
No 222
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=89.71 E-value=0.12 Score=55.54 Aligned_cols=34 Identities=21% Similarity=0.384 Sum_probs=28.4
Q ss_pred eee-cccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 131 VID-LICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 131 ~ID-~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+++ .=+.+.+|++++|.|++|+|||||+..++.-
T Consensus 359 vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 359 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTS
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 443 3456999999999999999999999988763
No 223
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=89.71 E-value=1.7 Score=43.73 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.1
Q ss_pred CceeeeecCCCCCchhhHHHHHHH
Q psy2897 141 GGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+..++|+|++|+|||+|+..++..
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 567999999999999999988764
No 224
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=89.66 E-value=0.18 Score=44.92 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=23.3
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHHH
Q psy2897 139 SKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
.++..+.|.|.+|+||||++..++...
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 357789999999999999999988754
No 225
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.63 E-value=0.13 Score=54.82 Aligned_cols=28 Identities=32% Similarity=0.521 Sum_probs=24.9
Q ss_pred ccccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 137 PFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 137 pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
.+.+|++++|.|+.|+|||||+..|+--
T Consensus 308 ~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 308 EIKKGEVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3679999999999999999999987753
No 226
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=89.57 E-value=0.5 Score=41.78 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.1
Q ss_pred eeeeecCCCCCchhhHHHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINNIA 166 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~~~ 166 (467)
.++|.|++|+||||++..++....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999988653
No 227
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=89.54 E-value=0.16 Score=47.15 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=21.8
Q ss_pred cccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 138 FSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 138 igrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
.-++..+.|.|++|+||||++..++..
T Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 4 SARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp ---CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 346678999999999999999988764
No 228
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=89.54 E-value=0.15 Score=44.98 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=17.7
Q ss_pred cCceeeeecCCCCCchhhHHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
++..+.|.|.+|+||||++..++..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 6778999999999999999998764
No 229
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.52 E-value=0.31 Score=51.05 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=20.5
Q ss_pred ceeeeecCCCCCchhhHHHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
--++++||||||||.|+..+|...
T Consensus 244 rGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp SEEEECSCTTSSHHHHHHHHHHHH
T ss_pred CceEeeCCCCCcHHHHHHHHHhcc
Confidence 348999999999999999888764
No 230
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.50 E-value=0.1 Score=50.09 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=28.3
Q ss_pred eeeecc-ccccc---CceeeeecCCCCCchhhHHHHHHHH
Q psy2897 130 KVIDLI-CPFSK---GGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 130 r~ID~l-~pigr---Gqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
.+++.+ +.+.+ |.++.|.|++|+||||++..++...
T Consensus 33 ~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 33 QILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp HHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 344333 34666 9999999999999999999998754
No 231
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=89.46 E-value=0.14 Score=46.27 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=19.3
Q ss_pred eeeeecCCCCCchhhHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~ 163 (467)
+++|.|++|+||||++..++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999998876
No 232
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.45 E-value=0.1 Score=48.77 Aligned_cols=28 Identities=21% Similarity=0.132 Sum_probs=24.5
Q ss_pred ccccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 137 PFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 137 pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+..+|..++|.|+.|+||||++..++..
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999999987653
No 233
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=89.44 E-value=0.12 Score=55.21 Aligned_cols=29 Identities=28% Similarity=0.479 Sum_probs=25.8
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..|+.-
T Consensus 289 ~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 289 GEAKEGEIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred ceECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999999988753
No 234
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=89.40 E-value=0.16 Score=49.69 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=25.2
Q ss_pred cccCceeeeecCCCCCchhhHHHHHHHHH
Q psy2897 138 FSKGGKVGLFGGAGVGKTVNMMELINNIA 166 (467)
Q Consensus 138 igrGqr~~I~g~~g~GKt~L~~~i~~~~~ 166 (467)
-.++..++|.|++|+|||||+..++....
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 46788999999999999999998887653
No 235
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=89.40 E-value=0.19 Score=46.26 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=22.9
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+|-++.|.|++|+||||++..++...
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998753
No 236
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.36 E-value=0.16 Score=51.74 Aligned_cols=29 Identities=21% Similarity=0.078 Sum_probs=26.0
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|+.++|.|++|+|||||+..++..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 46889999999999999999999988863
No 237
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=89.36 E-value=0.35 Score=44.24 Aligned_cols=29 Identities=24% Similarity=0.285 Sum_probs=25.7
Q ss_pred cccCceeeeecCCCCCchhhHHHHHHHHH
Q psy2897 138 FSKGGKVGLFGGAGVGKTVNMMELINNIA 166 (467)
Q Consensus 138 igrGqr~~I~g~~g~GKt~L~~~i~~~~~ 166 (467)
+.+|..+.|.|.+|+||||++..++....
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 56789999999999999999999988654
No 238
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=89.36 E-value=0.12 Score=55.42 Aligned_cols=31 Identities=23% Similarity=0.301 Sum_probs=27.1
Q ss_pred cccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 134 LICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 134 ~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
.=+.+.+|++++|.|++|+|||||+..++.-
T Consensus 362 v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 362 INLKIPAGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEECTTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 3456899999999999999999999988764
No 239
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=89.36 E-value=1.8 Score=44.71 Aligned_cols=46 Identities=20% Similarity=0.097 Sum_probs=34.1
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHHHhh-CCCEEEEEEecCCchHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINNIAKA-HSGLSVFTGVGERTREG 185 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~~~~-~~dv~V~~liGeR~~ev 185 (467)
+...+.+.|..|+||||++..++...++. +..|.++.+=-.|..-+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~ 145 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAI 145 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHH
Confidence 45678899999999999999999988776 55566655444454443
No 240
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=89.29 E-value=0.61 Score=44.80 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=23.2
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHHHH
Q psy2897 139 SKGGKVGLFGGAGVGKTVNMMELINNIA 166 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~~~ 166 (467)
++...+.|.|++|+|||+++..+++...
T Consensus 44 ~~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 44 GSMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp TCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 3444599999999999999999998754
No 241
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=89.28 E-value=0.62 Score=45.89 Aligned_cols=25 Identities=24% Similarity=0.297 Sum_probs=21.3
Q ss_pred CceeeeecCCCCCchhhHHHHHHHH
Q psy2897 141 GGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
..-++|+|++|+|||+|+..+++..
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCccHHHHHHHHHHHc
Confidence 3568999999999999999888753
No 242
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.27 E-value=0.43 Score=49.58 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=19.9
Q ss_pred eeeecCCCCCchhhHHHHHHHH
Q psy2897 144 VGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 144 ~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
++++||||||||.|+..+|...
T Consensus 219 vLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 219 VILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp EEEESSTTTTHHHHHHHHHHHH
T ss_pred CceECCCCchHHHHHHHHHHHh
Confidence 8999999999999999888764
No 243
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.21 E-value=0.22 Score=51.51 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=28.2
Q ss_pred eeecccccccCceeeeecCCCCCchhhHHHHHHHHH
Q psy2897 131 VIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIA 166 (467)
Q Consensus 131 ~ID~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~~~ 166 (467)
+++.++ ..+|+.++|.|+.|+|||||+..++....
T Consensus 158 ~L~~l~-~~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 158 NFRRLI-KRPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp HHHHHH-TSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred HHHHHH-HhcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 444443 36899999999999999999999887653
No 244
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=89.19 E-value=0.36 Score=47.36 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=20.9
Q ss_pred ceeeeecCCCCCchhhHHHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
..++|+|++|+|||+|+..+++..
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 458999999999999999888753
No 245
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.11 E-value=0.14 Score=55.13 Aligned_cols=29 Identities=34% Similarity=0.420 Sum_probs=26.1
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+.+|++++|.|++|+|||||+..++.-
T Consensus 376 l~i~~G~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 376 FHIKPGQKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EECCTTCEEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 56999999999999999999999987653
No 246
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=89.10 E-value=0.42 Score=46.77 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=20.3
Q ss_pred ceeeeecCCCCCchhhHHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
..+.|.|++|+|||+|+..+++.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999999988764
No 247
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=89.09 E-value=0.17 Score=45.03 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=21.1
Q ss_pred ceeeeecCCCCCchhhHHHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
.++.|.|++|+||||++..++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998753
No 248
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=89.07 E-value=0.16 Score=46.11 Aligned_cols=21 Identities=43% Similarity=0.558 Sum_probs=18.8
Q ss_pred eeeeecCCCCCchhhHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~ 163 (467)
.++|.|++|+||||++..++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 249
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=89.04 E-value=0.18 Score=45.16 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=23.4
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHHH
Q psy2897 139 SKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
.++..+.|.|++|+||||++..++...
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999988754
No 250
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=89.01 E-value=0.17 Score=52.47 Aligned_cols=28 Identities=32% Similarity=0.363 Sum_probs=24.3
Q ss_pred cccccCce--eeeecCCCCCchhhHHHHHH
Q psy2897 136 CPFSKGGK--VGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 136 ~pigrGqr--~~I~g~~g~GKt~L~~~i~~ 163 (467)
+.+-+|.. ++|+|++|+|||||+..|+.
T Consensus 35 l~i~~Gei~~vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 35 KSVSQGFCFNILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp HSCC-CCEEEEEEECSTTSSSHHHHHHHHT
T ss_pred eEecCCCeeEEEEECCCCCCHHHHHHHHhC
Confidence 56889999 99999999999999998865
No 251
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=89.00 E-value=0.21 Score=45.14 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=23.0
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHHH
Q psy2897 139 SKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
.++..+.|.|++|+||||++..++...
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456689999999999999999988753
No 252
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.97 E-value=0.31 Score=45.76 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=26.1
Q ss_pred cccCceeeeecCCCCCchhhHHHHHHHHH
Q psy2897 138 FSKGGKVGLFGGAGVGKTVNMMELINNIA 166 (467)
Q Consensus 138 igrGqr~~I~g~~g~GKt~L~~~i~~~~~ 166 (467)
..+|..+.|.|++|+||||++..++....
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 56899999999999999999999988654
No 253
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=88.96 E-value=0.15 Score=55.11 Aligned_cols=27 Identities=33% Similarity=0.564 Sum_probs=24.6
Q ss_pred ccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 137 PFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 137 pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
.+.+|+.++|+|++|+|||||+..|+-
T Consensus 378 ~v~~Gei~~i~G~NGsGKSTLlk~l~G 404 (607)
T 3bk7_A 378 EIRKGEVIGIVGPNGIGKTTFVKMLAG 404 (607)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhc
Confidence 368999999999999999999998875
No 254
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=88.94 E-value=0.2 Score=44.85 Aligned_cols=23 Identities=30% Similarity=0.642 Sum_probs=20.6
Q ss_pred eeeeecCCCCCchhhHHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
.+.|.|++|+||||++..++...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 57899999999999999998754
No 255
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=88.86 E-value=0.21 Score=47.60 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=22.7
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHHH
Q psy2897 139 SKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
..+..++|+|++|+|||+|+..++...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 356679999999999999999887653
No 256
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=88.80 E-value=0.23 Score=44.82 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=21.4
Q ss_pred cCceeeeecCCCCCchhhHHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+...+.|.|++|+||||++..++..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4457899999999999999988764
No 257
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=88.76 E-value=0.2 Score=47.28 Aligned_cols=27 Identities=22% Similarity=0.414 Sum_probs=23.1
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHHH
Q psy2897 139 SKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
.++-++.|+|++|+||||++..++...
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356689999999999999999988643
No 258
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=88.75 E-value=0.37 Score=43.51 Aligned_cols=34 Identities=18% Similarity=0.200 Sum_probs=25.8
Q ss_pred ceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEE
Q psy2897 142 GKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVF 175 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~ 175 (467)
..++|.|++|+|||||+..++......+..+.++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i 40 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLI 40 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEE
Confidence 4688999999999999999998765443334444
No 259
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=88.72 E-value=0.21 Score=46.00 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=22.9
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+|.++.|.|++|+||||++..++...
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999988754
No 260
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=88.63 E-value=0.18 Score=44.16 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=19.0
Q ss_pred eeeeecCCCCCchhhHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~ 163 (467)
.+.|.|++|+||||++..++.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 578999999999999998876
No 261
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=88.61 E-value=0.17 Score=47.98 Aligned_cols=29 Identities=21% Similarity=0.029 Sum_probs=25.3
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
.+..++..+.|.|++|+||||++..++..
T Consensus 27 ~~~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 27 KSSKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CCCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred CcccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 35677889999999999999999998764
No 262
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=88.58 E-value=0.21 Score=45.21 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=21.1
Q ss_pred ceeeeecCCCCCchhhHHHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
-.+.|.|++|+||||++..++...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999988753
No 263
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.43 E-value=0.2 Score=45.00 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=19.8
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+++|+|++|+|||||+..++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7899999999999999988763
No 264
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=88.40 E-value=0.075 Score=53.06 Aligned_cols=30 Identities=30% Similarity=0.447 Sum_probs=26.1
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2897 136 CPFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+.+.+|+.++|.|++|+|||||+..++...
T Consensus 166 ~~i~~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 166 DGIAIGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HHHHHTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 347789999999999999999999887643
No 265
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=88.32 E-value=0.17 Score=43.65 Aligned_cols=19 Identities=26% Similarity=0.212 Sum_probs=17.6
Q ss_pred eeeeecCCCCCchhhHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMEL 161 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i 161 (467)
.+.|.|++|+||||++..+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999988
No 266
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.28 E-value=0.2 Score=45.01 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=20.0
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+++|+|++|+|||||+..++.+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7899999999999999988764
No 267
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=88.26 E-value=0.22 Score=46.88 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=19.9
Q ss_pred eeeecCCCCCchhhHHHHHHHH
Q psy2897 144 VGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 144 ~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
++|+|++|+|||+|+..++...
T Consensus 48 vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHc
Confidence 8999999999999999888753
No 268
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=88.25 E-value=0.22 Score=43.96 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.6
Q ss_pred eeeeecCCCCCchhhHHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
++.|.|++|+||||++..++...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998754
No 269
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=88.22 E-value=0.19 Score=57.39 Aligned_cols=34 Identities=21% Similarity=0.401 Sum_probs=28.4
Q ss_pred eeeec-ccccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 130 KVIDL-ICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 130 r~ID~-l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
.+++. =+.+.+|++++|.|++|+|||||+..|+.
T Consensus 449 ~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred EeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34443 45699999999999999999999999884
No 270
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=88.16 E-value=0.21 Score=44.31 Aligned_cols=28 Identities=32% Similarity=0.517 Sum_probs=22.9
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 135 ICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
-+.+.+| ..+|+|+.|+|||||+..|..
T Consensus 21 ~~~~~~g-~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 21 VIPFSKG-FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEECCSS-EEEEEECTTSSHHHHHHHHHH
T ss_pred EEecCCC-cEEEECCCCCCHHHHHHHHHH
Confidence 3456677 899999999999999986654
No 271
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=88.15 E-value=0.46 Score=47.53 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=30.8
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEE
Q psy2897 139 SKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFT 176 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~ 176 (467)
++.-+++|.|.+|+|||||+..++......+..+.++.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 45678999999999999999999988766555566654
No 272
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=88.01 E-value=0.11 Score=55.62 Aligned_cols=34 Identities=24% Similarity=0.318 Sum_probs=28.1
Q ss_pred eeecc-cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 131 VIDLI-CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 131 ~ID~l-~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+++.+ +.+.+|++++|.|++|+|||||+..++.-
T Consensus 356 ~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred ceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcC
Confidence 44443 57999999999999999999999877653
No 273
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=87.99 E-value=0.21 Score=48.63 Aligned_cols=23 Identities=26% Similarity=0.629 Sum_probs=19.8
Q ss_pred eeeeecCCCCCchhhHHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
-++++|+||+|||+|+..+++..
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36778999999999999998865
No 274
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=87.97 E-value=0.22 Score=43.36 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.6
Q ss_pred ceeeeecCCCCCchhhHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~ 163 (467)
-+++|+|++|+|||+|+..++.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999998864
No 275
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=87.82 E-value=0.49 Score=43.42 Aligned_cols=44 Identities=20% Similarity=0.262 Sum_probs=31.2
Q ss_pred cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEE-EecCC
Q psy2897 138 FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFT-GVGER 181 (467)
Q Consensus 138 igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~-liGeR 181 (467)
..+|+-..+.|+.|+||||.+..++++....+..+.++- .++.|
T Consensus 5 ~~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r 49 (191)
T 1xx6_A 5 KDHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNR 49 (191)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC----
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCcc
Confidence 356888899999999999999999998765544555553 34443
No 276
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=87.81 E-value=0.42 Score=46.59 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=19.3
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
++-.++|.|++|+||||++..++...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 44579999999999999999988754
No 277
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=87.79 E-value=0.29 Score=47.13 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=23.5
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHHHh
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
.+..+.|+|++|+|||+|+..+++....
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3556999999999999999998887644
No 278
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=87.76 E-value=0.25 Score=52.89 Aligned_cols=31 Identities=23% Similarity=0.200 Sum_probs=27.3
Q ss_pred ccccCceeeeecCCCCCchhhHHHHHHHHHh
Q psy2897 137 PFSKGGKVGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 137 pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
.+-+|+.+.|.|.+|+|||||+..++.....
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 4678999999999999999999999886543
No 279
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=87.72 E-value=0.26 Score=46.06 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=23.1
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 139 SKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
.+|.+++|.|++|+||||++..++..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999988764
No 280
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=87.71 E-value=0.21 Score=53.33 Aligned_cols=28 Identities=29% Similarity=0.371 Sum_probs=24.5
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 136 CPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
-...+|+..+|+|++|+|||||+..|+-
T Consensus 20 ~~~~~Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 20 PTPKNNTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp CCCCTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhc
Confidence 3366899999999999999999998764
No 281
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=87.60 E-value=0.25 Score=45.82 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.7
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
++.|+|+||+||+|++..|+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998875
No 282
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=87.56 E-value=0.48 Score=45.05 Aligned_cols=28 Identities=25% Similarity=0.182 Sum_probs=23.4
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHHHH
Q psy2897 139 SKGGKVGLFGGAGVGKTVNMMELINNIA 166 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~~~ 166 (467)
.++..+.|.|.+|+||||++..++....
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3566799999999999999999987643
No 283
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=87.55 E-value=0.27 Score=46.78 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=21.6
Q ss_pred CceeeeecCCCCCchhhHHHHHHHH
Q psy2897 141 GGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
.-.+.|.|++|+||||++..++...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3479999999999999999988754
No 284
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.52 E-value=0.64 Score=44.57 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=22.6
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINNIA 166 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~~ 166 (467)
+...+.|+|++|+|||+++..+++...
T Consensus 41 ~~~~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 41 NMPHMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 333499999999999999999988754
No 285
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=87.44 E-value=0.25 Score=48.86 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.7
Q ss_pred ceeeeecCCCCCchhhHHHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
..++|+|++|+|||||+..++...
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 679999999999999999988754
No 286
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=87.34 E-value=0.28 Score=47.08 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=22.1
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
.+..++|+|++|+|||+++..++...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 36679999999999999999887653
No 287
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=87.31 E-value=0.28 Score=45.16 Aligned_cols=26 Identities=19% Similarity=0.124 Sum_probs=22.5
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
++..+.|.|++|+||||++..++...
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999988753
No 288
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=87.23 E-value=0.16 Score=54.69 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=28.4
Q ss_pred eeecc-cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 131 VIDLI-CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 131 ~ID~l-~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+++.+ +.+.+|++++|.|++|+|||||+..++.-
T Consensus 358 ~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp SEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTS
T ss_pred ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44443 57999999999999999999999877653
No 289
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=87.22 E-value=0.21 Score=44.30 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=19.3
Q ss_pred eeeeecCCCCCchhhHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~ 163 (467)
++.|+|++|+|||+|+..++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 789999999999999998875
No 290
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=87.16 E-value=0.2 Score=59.09 Aligned_cols=34 Identities=21% Similarity=0.296 Sum_probs=28.4
Q ss_pred eeec-ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 131 VIDL-ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 131 ~ID~-l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+++. =+.|-+||+++|+|++|+|||||+.-+.+-
T Consensus 1094 VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred cccceeEEECCCCEEEEECCCCChHHHHHHHHhcC
Confidence 4433 357999999999999999999999988763
No 291
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=87.15 E-value=4.5 Score=37.47 Aligned_cols=50 Identities=12% Similarity=0.115 Sum_probs=35.0
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHHHhhCC-CEEEEEEecC-CchHHHHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINNIAKAHS-GLSVFTGVGE-RTREGNDFYHEM 192 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~-dv~V~~liGe-R~~ev~e~~~~~ 192 (467)
+|--+-|.|++|+||||++..++......+- .+. +.-| .+.++.+.++.+
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~---~~rep~~t~~g~~ir~~ 53 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMV---FTREPGGTQLAEKLRSL 53 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEE---EEESSCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcce---eeeCCCCCHHHHHHHHH
Confidence 5778899999999999999999987655432 332 2222 345666766665
No 292
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=87.15 E-value=0.45 Score=49.29 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=28.1
Q ss_pred eeeeecCCCCCchhhHHHHHHHHHhhCC-CEEEEEEe
Q psy2897 143 KVGLFGGAGVGKTVNMMELINNIAKAHS-GLSVFTGV 178 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~~~~~~~-dv~V~~li 178 (467)
...|.|++|+|||+++..++....+.+. .+.+.+.-
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T 83 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPT 83 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCc
Confidence 8999999999999999999988766543 34444444
No 293
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=87.14 E-value=0.28 Score=46.38 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=19.9
Q ss_pred eeeecCCCCCchhhHHHHHHHH
Q psy2897 144 VGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 144 ~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
++|+|++|+|||+|+..++...
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 8999999999999999888754
No 294
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=87.12 E-value=0.22 Score=48.12 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=20.2
Q ss_pred eeeeecCCCCCchhhHHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+++|.|++|+|||||+..++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999888653
No 295
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=87.11 E-value=0.29 Score=50.16 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=25.8
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 135 ICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
|-.+.+|.+++|+|.+|+|||||+..+..
T Consensus 14 lg~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 14 WGRPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp CSSSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 33578899999999999999999999987
No 296
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=87.08 E-value=0.35 Score=46.54 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=22.7
Q ss_pred ceeeeecCCCCCchhhHHHHHHHHHh
Q psy2897 142 GKVGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
..++|.|++|+|||+++..++.....
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 47899999999999999999887643
No 297
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=87.05 E-value=0.33 Score=47.21 Aligned_cols=29 Identities=21% Similarity=0.136 Sum_probs=24.3
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 136 CPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
.+-.+|..+.|.|+||+||||++..++..
T Consensus 28 ~~~~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 28 KAVESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp CCCSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34556788999999999999999998764
No 298
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=86.98 E-value=0.31 Score=41.67 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=19.7
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
|+.++|.+|+|||+|+..+..+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999988764
No 299
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=86.95 E-value=0.29 Score=43.89 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=20.7
Q ss_pred cCceeeeecCCCCCchhhHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
+-..++|.|++|+||||++..++.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999998875
No 300
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=86.89 E-value=0.33 Score=45.25 Aligned_cols=26 Identities=35% Similarity=0.517 Sum_probs=22.8
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
++.++.|.|++|+||||++..++...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998754
No 301
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=86.86 E-value=0.29 Score=42.13 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=21.2
Q ss_pred cCceeeeecCCCCCchhhHHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
.+.-+.|.|++|+|||+++..+...
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999999999877654
No 302
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=86.85 E-value=0.35 Score=45.15 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=21.3
Q ss_pred CceeeeecCCCCCchhhHHHHHHHH
Q psy2897 141 GGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
...++|.|++|+|||+++..+++..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3458999999999999999888754
No 303
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=86.81 E-value=0.29 Score=42.59 Aligned_cols=23 Identities=22% Similarity=0.177 Sum_probs=20.4
Q ss_pred eeeeecCCCCCchhhHHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
++.|.|.+|+||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999988753
No 304
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=86.79 E-value=0.49 Score=47.71 Aligned_cols=49 Identities=14% Similarity=0.213 Sum_probs=34.1
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEM 192 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~ 192 (467)
.+..+.|+|++|+|||+++..++.+....+..+.|+ + ...+...+.+.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~---D-~~~~~~~~~~~~ 82 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII---D-PEREYKEMCRKL 82 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE---E-SSCCSHHHHHHT
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE---e-CCcCHHHHHHHc
Confidence 567899999999999999999998766544344443 2 234455555554
No 305
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=86.76 E-value=0.61 Score=52.10 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=19.2
Q ss_pred ceeeeecCCCCCchhhHHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
..++++||||+|||.|+..++..
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e 534 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHT
T ss_pred ceEEEecCCCCCchHHHHHHHHH
Confidence 45899999999999888877654
No 306
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=86.75 E-value=0.31 Score=42.51 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=20.8
Q ss_pred ceeeeecCCCCCchhhHHHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
..+.|.|++|+||||++..++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999988753
No 307
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=86.73 E-value=2.5 Score=39.71 Aligned_cols=52 Identities=17% Similarity=0.086 Sum_probs=34.7
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHHHHh-hCCCEEEEEEecCC-chHHHHHHHHH
Q psy2897 139 SKGGKVGLFGGAGVGKTVNMMELINNIAK-AHSGLSVFTGVGER-TREGNDFYHEM 192 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~~~~-~~~dv~V~~liGeR-~~ev~e~~~~~ 192 (467)
.+|.-+.|.|.+|+||||++..++..... .+-.+.++ .-|. +..+.+.++.+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~--treP~~t~~g~~ir~~ 72 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVL--TREPGGTLLNESVRNL 72 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEE--EESSCSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEe--eeCCCCChHHHHHHHH
Confidence 46888999999999999999999987655 43334331 1121 34555555554
No 308
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=86.60 E-value=0.31 Score=41.63 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=19.7
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
++.++|.+|+|||+|+..+..+
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7899999999999999988753
No 309
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=86.59 E-value=0.31 Score=41.40 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=19.1
Q ss_pred eeeeecCCCCCchhhHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~ 163 (467)
++.++|++|+|||+|+..+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999998875
No 310
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=86.48 E-value=0.32 Score=41.34 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=20.0
Q ss_pred ceeeeecCCCCCchhhHHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
-++.++|++|+|||+|+..+..+
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 37899999999999999887753
No 311
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=86.46 E-value=0.49 Score=51.24 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=33.8
Q ss_pred ceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMI 193 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~ 193 (467)
.-..|.||||||||+.+..++.+..+.+..+-|.+ -...-+.++.+.+.
T Consensus 206 ~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a---~TN~AvD~i~erL~ 254 (646)
T 4b3f_X 206 ELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCA---PSNIAVDNLVERLA 254 (646)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE---SSHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEc---CchHHHHHHHHHHH
Confidence 35789999999999999999998777654443333 23344455555553
No 312
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=86.46 E-value=0.32 Score=44.53 Aligned_cols=23 Identities=17% Similarity=0.314 Sum_probs=20.4
Q ss_pred eeeeecCCCCCchhhHHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
++.|.|++|+||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999988753
No 313
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=86.42 E-value=0.3 Score=42.15 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=19.0
Q ss_pred eeeeecCCCCCchhhHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~ 163 (467)
++.|+|++|+|||+|+..+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 789999999999999988764
No 314
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=86.42 E-value=0.3 Score=42.96 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.7
Q ss_pred ceeeeecCCCCCchhhHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~ 163 (467)
-++.++|++|+|||+|+..++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999998864
No 315
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=86.22 E-value=0.18 Score=55.06 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=24.2
Q ss_pred cccccCceeeeecCCCCCchhhHHHHH
Q psy2897 136 CPFSKGGKVGLFGGAGVGKTVNMMELI 162 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~ 162 (467)
+.+.+|+.++|.|++|+|||||+..++
T Consensus 343 l~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 343 VKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred eEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 569999999999999999999997654
No 316
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=86.07 E-value=0.17 Score=53.55 Aligned_cols=29 Identities=17% Similarity=0.194 Sum_probs=25.2
Q ss_pred ccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2897 137 PFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 137 pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
.+.+|+.++|.|++|+||||++..++...
T Consensus 256 ~v~~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 256 AIEHKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp HHHTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred HHhCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 36789999999999999999999887644
No 317
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=86.01 E-value=0.5 Score=47.05 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.2
Q ss_pred eeeeecCCCCCchhhHHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
.+||.|++|+|||||+..+....
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999998887643
No 318
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=85.99 E-value=0.16 Score=46.06 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=21.5
Q ss_pred eeeeecCCCCCchhhHHHHHHHHHh
Q psy2897 143 KVGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
.+.|.|++|+||||++..++.....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999887643
No 319
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=85.92 E-value=1.4 Score=42.38 Aligned_cols=25 Identities=28% Similarity=0.398 Sum_probs=21.9
Q ss_pred CceeeeecCCCCCchhhHHHHHHHH
Q psy2897 141 GGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
...+.|.|++|+|||+|+..+++..
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999988754
No 320
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=85.92 E-value=0.22 Score=51.42 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=19.8
Q ss_pred eeeeecCCCCCchhhHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~ 163 (467)
.++|+|++|+|||||+..++.
T Consensus 71 ~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 999999999999999998875
No 321
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=85.90 E-value=0.33 Score=41.04 Aligned_cols=22 Identities=41% Similarity=0.693 Sum_probs=19.6
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
++.++|.+|+|||+|+..+..+
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7899999999999999988754
No 322
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=85.86 E-value=0.36 Score=41.04 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=19.6
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
++.++|.+|+|||+|+..+..+
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7899999999999999988753
No 323
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=85.83 E-value=0.31 Score=45.50 Aligned_cols=25 Identities=36% Similarity=0.535 Sum_probs=22.0
Q ss_pred cCceeeeecCCCCCchhhHHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
.|..+.|.|++|+|||+|+.+++..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4778999999999999999988753
No 324
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=85.81 E-value=0.38 Score=42.50 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=20.9
Q ss_pred CceeeeecCCCCCchhhHHHHHHH
Q psy2897 141 GGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
...+.|.|++|+||||++..++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999998764
No 325
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=85.81 E-value=0.24 Score=53.93 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=21.7
Q ss_pred cccccCceeeeecCCCCCchhhH
Q psy2897 136 CPFSKGGKVGLFGGAGVGKTVNM 158 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~ 158 (467)
+.+.+|+.++|+|++|+|||||+
T Consensus 39 l~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 39 VEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EEEETTSEEEEECSTTSSHHHHH
T ss_pred EEECCCCEEEEECCCCCCHHHHh
Confidence 56899999999999999999997
No 326
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=85.79 E-value=0.38 Score=51.21 Aligned_cols=27 Identities=33% Similarity=0.417 Sum_probs=24.4
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHHH
Q psy2897 139 SKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
.+|..++|+|++|+|||+|+..++...
T Consensus 106 ~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 106 LKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 379999999999999999999988764
No 327
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=85.73 E-value=0.38 Score=45.95 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=22.6
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
.+..+.|.|++|+|||+++..+++..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999988764
No 328
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=85.69 E-value=0.34 Score=43.26 Aligned_cols=25 Identities=36% Similarity=0.412 Sum_probs=20.2
Q ss_pred ccCceeeeecCCCCCchhhHHHHHH
Q psy2897 139 SKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
-+.-++.++|++|+|||+|+..+..
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3455999999999999999998875
No 329
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=85.64 E-value=0.35 Score=45.44 Aligned_cols=28 Identities=29% Similarity=0.259 Sum_probs=22.9
Q ss_pred cccCceeeeecCCCCCchhhHHHHHHHH
Q psy2897 138 FSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 138 igrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+.+.-.++|.|+||+|||+++..+++.+
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 4444569999999999999999888754
No 330
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=85.61 E-value=0.35 Score=41.51 Aligned_cols=21 Identities=38% Similarity=0.414 Sum_probs=18.8
Q ss_pred eeeeecCCCCCchhhHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~ 163 (467)
|+.++|.+|+|||+|+..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998763
No 331
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=85.58 E-value=0.18 Score=45.53 Aligned_cols=26 Identities=15% Similarity=0.270 Sum_probs=22.8
Q ss_pred ceeeeecCCCCCchhhHHHHHHHHHh
Q psy2897 142 GKVGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
+.++|.|++|+|||||+..+++....
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57899999999999999999987654
No 332
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=85.53 E-value=0.31 Score=41.59 Aligned_cols=22 Identities=36% Similarity=0.635 Sum_probs=19.7
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
++.++|++|+|||+|+..+..+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999988754
No 333
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=85.51 E-value=0.37 Score=45.75 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=21.4
Q ss_pred CceeeeecCCCCCchhhHHHHHHHH
Q psy2897 141 GGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
.-|.||+|++|+||||++..++...
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999988753
No 334
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=85.51 E-value=0.39 Score=43.92 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=20.6
Q ss_pred cCceeeeecCCCCCchhhHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
++-.++|.|++|+||||++..++.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999998864
No 335
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=85.43 E-value=0.39 Score=40.97 Aligned_cols=22 Identities=27% Similarity=0.611 Sum_probs=19.7
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
++.++|.+|+|||+|+..+..+
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999988753
No 336
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=85.40 E-value=0.38 Score=41.23 Aligned_cols=22 Identities=41% Similarity=0.511 Sum_probs=19.6
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
++.++|.+|+|||+|+..+..+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7899999999999999888754
No 337
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=85.27 E-value=0.4 Score=43.90 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.1
Q ss_pred CceeeeecCCCCCchhhHHHHHHH
Q psy2897 141 GGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
...++|.|++|+||||++..++..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999999999998764
No 338
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=85.15 E-value=0.38 Score=45.42 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.3
Q ss_pred ceeeeecCCCCCchhhHHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
-.++|.|++|+||||++..++..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988764
No 339
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=85.11 E-value=0.38 Score=45.78 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=20.1
Q ss_pred eeeeecCCCCCchhhHHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
.+.|.|++|+|||||+..++...
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 36899999999999999998754
No 340
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=85.05 E-value=0.38 Score=41.11 Aligned_cols=21 Identities=33% Similarity=0.695 Sum_probs=19.0
Q ss_pred eeeeecCCCCCchhhHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~ 163 (467)
++.++|++|+|||+|+..+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 689999999999999998874
No 341
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=84.94 E-value=0.42 Score=40.78 Aligned_cols=22 Identities=27% Similarity=0.560 Sum_probs=19.7
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
++.++|.+|+|||+|+..+..+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999988753
No 342
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=84.94 E-value=0.58 Score=50.21 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=29.2
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEE
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTG 177 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~l 177 (467)
.++.+.|.|+||+|||+++..++......+..+.+.+.
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 46789999999999999999998876554444444443
No 343
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=84.92 E-value=0.4 Score=43.88 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=17.8
Q ss_pred eeeecCCCCCchhhHHHHHHH
Q psy2897 144 VGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 144 ~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+-|.||||+|||||+..+...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999987653
No 344
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=84.90 E-value=0.39 Score=41.04 Aligned_cols=22 Identities=32% Similarity=0.712 Sum_probs=19.6
Q ss_pred ceeeeecCCCCCchhhHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~ 163 (467)
-++.++|.+|+|||+|+..+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4789999999999999988775
No 345
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=84.85 E-value=1.5 Score=49.19 Aligned_cols=29 Identities=34% Similarity=0.414 Sum_probs=24.2
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHHHHh
Q psy2897 139 SKGGKVGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
.+...+.++|++|+|||+|+..++.....
T Consensus 189 ~~~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 189 RTKNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp SSCCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 34556899999999999999999987644
No 346
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=84.82 E-value=0.42 Score=41.37 Aligned_cols=23 Identities=43% Similarity=0.596 Sum_probs=20.0
Q ss_pred ceeeeecCCCCCchhhHHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
-++.++|++|+|||+|+..+..+
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 37899999999999999887753
No 347
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=84.82 E-value=0.42 Score=41.34 Aligned_cols=22 Identities=45% Similarity=0.644 Sum_probs=19.5
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
++.++|.+|+|||+|+..+..+
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999988753
No 348
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=84.82 E-value=0.62 Score=48.23 Aligned_cols=37 Identities=27% Similarity=0.271 Sum_probs=28.9
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEE
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFT 176 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~ 176 (467)
+...+.|+|.+|+||||++..++...++.+..+.++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3468999999999999999999997765544455543
No 349
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=84.76 E-value=0.36 Score=41.31 Aligned_cols=20 Identities=40% Similarity=0.441 Sum_probs=18.1
Q ss_pred eeeeecCCCCCchhhHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELI 162 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~ 162 (467)
|+.++|.+|+|||+|+..+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 78999999999999998765
No 350
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=84.63 E-value=0.41 Score=50.42 Aligned_cols=29 Identities=28% Similarity=0.501 Sum_probs=25.3
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2897 136 CPFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+.+.+ +.++|+|++|+|||||+..|+.-.
T Consensus 25 l~i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 25 FDFDE-LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp EECCS-SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEcc-ceEEEECCCCCcHHHHHHHHhcCC
Confidence 56788 999999999999999999887643
No 351
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=84.60 E-value=0.48 Score=42.55 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=20.5
Q ss_pred eeeeecCCCCCchhhHHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
.++|.|++|+||||++..++...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 68999999999999999988753
No 352
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=84.56 E-value=0.44 Score=40.71 Aligned_cols=22 Identities=41% Similarity=0.717 Sum_probs=19.8
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
++.++|.+|+|||+|+..+..+
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7899999999999999988754
No 353
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=84.55 E-value=0.43 Score=42.15 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=20.8
Q ss_pred CceeeeecCCCCCchhhHHHHHHH
Q psy2897 141 GGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
--++.++|.+|+|||+|+..+..+
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999988753
No 354
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=84.40 E-value=0.45 Score=41.59 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=19.7
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
++.|+|.+|+|||+|+..+..+
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999988753
No 355
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=84.31 E-value=0.23 Score=56.63 Aligned_cols=30 Identities=20% Similarity=0.336 Sum_probs=26.6
Q ss_pred cccccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 134 LICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 134 ~l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
.=+.+.+|++++|.|++|+|||||+..|+-
T Consensus 692 VSl~I~~GeivaIiGpNGSGKSTLLklLaG 721 (986)
T 2iw3_A 692 INFQCSLSSRIAVIGPNGAGKSTLINVLTG 721 (986)
T ss_dssp EEEEEETTCEEEECSCCCHHHHHHHHHHTT
T ss_pred cEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 345699999999999999999999998765
No 356
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=84.30 E-value=0.43 Score=41.26 Aligned_cols=23 Identities=35% Similarity=0.660 Sum_probs=20.4
Q ss_pred ceeeeecCCCCCchhhHHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
-++.++|.+|+|||+|+..+..+
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999988764
No 357
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=84.27 E-value=1.7 Score=42.15 Aligned_cols=69 Identities=13% Similarity=0.195 Sum_probs=37.1
Q ss_pred eeeeec-CCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHHHhhcccCCCCCCCceEEEEEeCCCCCH
Q psy2897 143 KVGLFG-GAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPS 219 (467)
Q Consensus 143 r~~I~g-~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~~~~~~~~~~~~~~~~~vvv~~t~d~~~ 219 (467)
...+++ ++|+|||+++..+++... .++..+-....+...+.+.+..+.+.... ..++.++++.-.|.-.
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l~---~~~~~i~~~~~~~~~i~~~~~~~~~~~~~-----~~~~~vliiDEi~~l~ 118 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDVN---ADMMFVNGSDCKIDFVRGPLTNFASAASF-----DGRQKVIVIDEFDRSG 118 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHTT---EEEEEEETTTCCHHHHHTHHHHHHHBCCC-----SSCEEEEEEESCCCGG
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHhC---CCEEEEcccccCHHHHHHHHHHHHhhccc-----CCCCeEEEEECCcccC
Confidence 454555 499999999998876541 23333333333334444444443222111 0126788887777543
No 358
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=84.22 E-value=0.47 Score=40.68 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.3
Q ss_pred cCceeeeecCCCCCchhhHHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.-++.++|.+|+|||+|+..+..+
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4458999999999999999988653
No 359
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=84.21 E-value=0.7 Score=42.10 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=22.6
Q ss_pred CceeeeecCCCCCchhhHHHHHHHHH
Q psy2897 141 GGKVGLFGGAGVGKTVNMMELINNIA 166 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~~~ 166 (467)
--++.|.|.+|+|||+|+..++.+..
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 35789999999999999999998753
No 360
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=84.19 E-value=0.45 Score=42.27 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.2
Q ss_pred ceeeeecCCCCCchhhHHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
-|+.|+|.+|+|||+|+..++.+
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 38999999999999999887764
No 361
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=84.14 E-value=0.39 Score=41.82 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.1
Q ss_pred ceeeeecCCCCCchhhHHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
-++.++|.+|+|||+|+..+..+
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 37899999999999999888754
No 362
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=84.10 E-value=0.42 Score=51.73 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.2
Q ss_pred cCceeeeecCCCCCchhhHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
+|+.++|.|++|+|||||+..|+-
T Consensus 377 ~GEiv~iiG~NGsGKSTLlk~l~G 400 (608)
T 3j16_B 377 DSEILVMMGENGTGKTTLIKLLAG 400 (608)
T ss_dssp TTCEEEEESCTTSSHHHHHHHHHT
T ss_pred cceEEEEECCCCCcHHHHHHHHhc
Confidence 348899999999999999998775
No 363
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=84.00 E-value=0.48 Score=41.38 Aligned_cols=22 Identities=41% Similarity=0.681 Sum_probs=19.7
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
|+.++|.+|+|||+|+..+..+
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7899999999999999988753
No 364
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=83.93 E-value=0.52 Score=43.66 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=20.2
Q ss_pred eeeeecCCCCCchhhHHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
++.|.|++|+||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999988753
No 365
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=83.77 E-value=0.5 Score=40.74 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.1
Q ss_pred ceeeeecCCCCCchhhHHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=++.++|.+|+|||+|+..+..+
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 37899999999999999988753
No 366
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=83.77 E-value=0.43 Score=41.80 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=18.9
Q ss_pred eeeeecCCCCCchhhHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~ 163 (467)
++.++|.+|+|||+|+..+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999988764
No 367
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=83.77 E-value=0.49 Score=41.94 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=19.9
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
|+.|+|.+|+|||+|+..+..+
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 7899999999999999988764
No 368
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=83.66 E-value=0.5 Score=41.47 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.4
Q ss_pred ceeeeecCCCCCchhhHHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=++.++|.+|+|||+|+..+..+
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999988764
No 369
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=83.65 E-value=0.48 Score=41.02 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.5
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
++.++|.+|+|||+|+..+..+
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 7899999999999999988753
No 370
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=83.48 E-value=0.46 Score=40.97 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.7
Q ss_pred ceeeeecCCCCCchhhHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~ 163 (467)
-++.++|.+|+|||+|+..+..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999998874
No 371
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=83.46 E-value=0.61 Score=43.71 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=21.3
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 139 SKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
-+.-.+.|+|+||+||+|++..++..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34445788999999999999988865
No 372
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=83.45 E-value=0.52 Score=41.51 Aligned_cols=22 Identities=41% Similarity=0.693 Sum_probs=19.9
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
++.++|.+|+|||+|+..++.+
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7999999999999999988753
No 373
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.40 E-value=0.49 Score=46.61 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.4
Q ss_pred eeeecCCCCCchhhHHHHHHHHHh
Q psy2897 144 VGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 144 ~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
.++.|++|+|||+++..+++....
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 899999999999999999987543
No 374
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=83.34 E-value=0.53 Score=41.66 Aligned_cols=22 Identities=45% Similarity=0.601 Sum_probs=19.7
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
++.|+|.+|+|||+|+..+..+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7899999999999999988763
No 375
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=83.31 E-value=0.33 Score=42.21 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=20.3
Q ss_pred ceeeeecCCCCCchhhHHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
-++.++|.+|+|||+|+..++.+
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999988764
No 376
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=83.30 E-value=1.4 Score=45.55 Aligned_cols=25 Identities=24% Similarity=0.297 Sum_probs=21.2
Q ss_pred CceeeeecCCCCCchhhHHHHHHHH
Q psy2897 141 GGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
..-++|+|++|+|||+|+..++...
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 3568999999999999999887753
No 377
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=83.26 E-value=0.5 Score=41.60 Aligned_cols=22 Identities=23% Similarity=0.378 Sum_probs=19.8
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
++.++|++|+|||+|+..+..+
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999988764
No 378
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=83.21 E-value=0.53 Score=40.81 Aligned_cols=22 Identities=27% Similarity=0.628 Sum_probs=19.7
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
++.++|.+|+|||+|+..+..+
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7899999999999999888753
No 379
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=83.19 E-value=0.54 Score=40.82 Aligned_cols=23 Identities=30% Similarity=0.561 Sum_probs=20.0
Q ss_pred ceeeeecCCCCCchhhHHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
-++.++|.+|+|||+|+..+..+
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 37999999999999999887753
No 380
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=83.14 E-value=0.51 Score=41.17 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=20.0
Q ss_pred ceeeeecCCCCCchhhHHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=++.|+|.+|+|||+|+..+..+
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 37899999999999999988753
No 381
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=83.04 E-value=0.54 Score=43.02 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.7
Q ss_pred cCceeeeecCCCCCchhhHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
-|.-++|.|+||+|||||+..++.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 477899999999999999999876
No 382
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=83.02 E-value=0.46 Score=42.23 Aligned_cols=22 Identities=18% Similarity=0.551 Sum_probs=20.0
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
++.++|.+|+|||+|+..+..+
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 7999999999999999988764
No 383
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.01 E-value=0.46 Score=46.65 Aligned_cols=29 Identities=28% Similarity=0.402 Sum_probs=24.0
Q ss_pred ccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2897 137 PFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 137 pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
.-+++..++|.|++|+||||++..+++..
T Consensus 32 ~~~~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 32 QPRDLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred hCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34565569999999999999999988854
No 384
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=82.97 E-value=0.56 Score=40.71 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=20.0
Q ss_pred CceeeeecCCCCCchhhHHHHHH
Q psy2897 141 GGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
--++.++|.+|+|||+|+..+..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999988765
No 385
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=82.95 E-value=0.53 Score=41.14 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.2
Q ss_pred ceeeeecCCCCCchhhHHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=++.++|.+|+|||+|+..+..+
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 37899999999999999988754
No 386
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=82.94 E-value=0.4 Score=56.34 Aligned_cols=29 Identities=28% Similarity=0.402 Sum_probs=26.3
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 135 ICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
=+.+.+|++++|.|++|+|||||+..+.+
T Consensus 1053 sl~i~~Ge~v~ivG~sGsGKSTl~~~l~g 1081 (1284)
T 3g5u_A 1053 SLEVKKGQTLALVGSSGCGKSTVVQLLER 1081 (1284)
T ss_dssp CEEECSSSEEEEECSSSTTHHHHHHHHTT
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35699999999999999999999998876
No 387
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=82.89 E-value=0.5 Score=40.84 Aligned_cols=21 Identities=29% Similarity=0.618 Sum_probs=18.9
Q ss_pred eeeeecCCCCCchhhHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~ 163 (467)
++.++|.+|+|||+|+..+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 789999999999999988764
No 388
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=82.88 E-value=0.83 Score=41.43 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=22.5
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+--++.|.|.+|+|||||+..++.+.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998865
No 389
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=82.87 E-value=0.53 Score=42.20 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=19.2
Q ss_pred eeeeecCCCCCchhhHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~ 163 (467)
++.|+|.+|+|||+|+..++.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 799999999999999998774
No 390
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=82.85 E-value=0.57 Score=40.57 Aligned_cols=22 Identities=41% Similarity=0.631 Sum_probs=19.7
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
++.++|.+|+|||+|+..+..+
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 7899999999999999988653
No 391
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=82.75 E-value=0.5 Score=41.47 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=19.7
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
++.++|.+|+|||+|+..+..+
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7999999999999999987653
No 392
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=82.74 E-value=0.52 Score=49.80 Aligned_cols=25 Identities=40% Similarity=0.492 Sum_probs=21.5
Q ss_pred cccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 138 FSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 138 igrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+.+| ++|+|++|+|||+|+..++..
T Consensus 63 ip~G--vLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 63 IPKG--VLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp CCSE--EEEECSSSSSHHHHHHHHHHH
T ss_pred CCce--EEEECCCCCCHHHHHHHHHHH
Confidence 4556 999999999999999988764
No 393
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=82.64 E-value=0.57 Score=44.23 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=21.3
Q ss_pred CceeeeecCCCCCchhhHHHHHHHH
Q psy2897 141 GGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+.-+.|.|++|+|||+|+..++...
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhc
Confidence 4679999999999999998887643
No 394
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=82.62 E-value=0.61 Score=40.31 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=21.5
Q ss_pred ccCceeeeecCCCCCchhhHHHHHH
Q psy2897 139 SKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
-+.-++.++|.+|+|||+|+..+..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3566899999999999999998765
No 395
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=82.52 E-value=0.94 Score=42.30 Aligned_cols=34 Identities=24% Similarity=0.182 Sum_probs=26.3
Q ss_pred ceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEE
Q psy2897 142 GKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFT 176 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~ 176 (467)
-.+.+.|..|+||||++..++...+ .+..+.++-
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd 48 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVN 48 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEe
Confidence 4566789999999999999998766 544565553
No 396
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=82.52 E-value=0.48 Score=46.32 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=21.9
Q ss_pred cCceeeeecCCCCCchhhHHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
|+.+++|+|.+|+|||||+..+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 5568999999999999999988753
No 397
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=82.51 E-value=0.58 Score=42.32 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=20.4
Q ss_pred ceeeeecCCCCCchhhHHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
-++.++|++|+|||+|+..+..+
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999988764
No 398
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=82.49 E-value=0.51 Score=41.64 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=20.8
Q ss_pred CceeeeecCCCCCchhhHHHHHHH
Q psy2897 141 GGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
--++.++|.+|+|||+|+..+..+
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999988753
No 399
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=82.42 E-value=0.6 Score=41.14 Aligned_cols=22 Identities=32% Similarity=0.656 Sum_probs=19.7
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
|+.|+|.+|+|||+|+..+..+
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7999999999999999988753
No 400
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=82.24 E-value=0.61 Score=41.44 Aligned_cols=23 Identities=30% Similarity=0.561 Sum_probs=20.0
Q ss_pred ceeeeecCCCCCchhhHHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=++.|+|.+|+|||+|+..+..+
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 37899999999999999888753
No 401
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=82.23 E-value=0.62 Score=41.13 Aligned_cols=22 Identities=32% Similarity=0.518 Sum_probs=19.7
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
++.|+|.+|+|||+|+..+..+
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999988753
No 402
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=82.18 E-value=0.55 Score=40.88 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=20.1
Q ss_pred ceeeeecCCCCCchhhHHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
-++.|+|.+|+|||+|+..+..+
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 37899999999999999988753
No 403
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=82.12 E-value=1.3 Score=41.60 Aligned_cols=47 Identities=19% Similarity=0.188 Sum_probs=31.6
Q ss_pred cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEE-EecCCchH
Q psy2897 138 FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFT-GVGERTRE 184 (467)
Q Consensus 138 igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~-liGeR~~e 184 (467)
-.+|+-..+.|+.|+||||.+.+++++....+..+.++- .++.|..|
T Consensus 25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge 72 (214)
T 2j9r_A 25 NQNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSE 72 (214)
T ss_dssp CCSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-------
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchH
Confidence 356888889999999999999999998766555566653 56666443
No 404
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=82.11 E-value=0.88 Score=46.42 Aligned_cols=36 Identities=19% Similarity=0.215 Sum_probs=27.5
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEE
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVF 175 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~ 175 (467)
.-+-+.|+|++|+|||+++..++.+..+.+..++|+
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~ 87 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIV 87 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 357899999999999999988888776654333333
No 405
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=82.00 E-value=0.66 Score=44.88 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=21.6
Q ss_pred CceeeeecCCCCCchhhHHHHHHH
Q psy2897 141 GGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
|+-+.|.|++|+|||+|+.++++.
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHH
Confidence 578999999999999999998764
No 406
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=82.00 E-value=0.63 Score=41.06 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.6
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
++.++|.+|+|||+|+..+..+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999988753
No 407
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.94 E-value=0.7 Score=45.07 Aligned_cols=25 Identities=24% Similarity=0.507 Sum_probs=21.9
Q ss_pred ceeeeecCCCCCchhhHHHHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELINNIA 166 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~~~ 166 (467)
..++|.|++|+|||+++..+++...
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4499999999999999999998754
No 408
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=81.92 E-value=0.63 Score=41.46 Aligned_cols=22 Identities=45% Similarity=0.675 Sum_probs=19.7
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
++.|+|.+|+|||+|+..+..+
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7899999999999999988754
No 409
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=81.83 E-value=0.65 Score=41.09 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=19.8
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
++.++|.+|+|||+|+..+..+
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999988754
No 410
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=81.79 E-value=0.46 Score=41.51 Aligned_cols=22 Identities=36% Similarity=0.631 Sum_probs=9.5
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
++.|+|.+|+|||+|+..+..+
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7899999999999999887653
No 411
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=81.70 E-value=0.66 Score=41.11 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.4
Q ss_pred ceeeeecCCCCCchhhHHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=|+.++|.+|+|||+|+..+..+
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 48999999999999999988764
No 412
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=81.62 E-value=0.66 Score=46.14 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=21.7
Q ss_pred CceeeeecCCCCCchhhHHHHHHHH
Q psy2897 141 GGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+..++|.|+||+|||+++..++...
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 5579999999999999999888754
No 413
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=81.59 E-value=0.4 Score=56.30 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=28.2
Q ss_pred eeec-ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 131 VIDL-ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 131 ~ID~-l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+++. =+.+.+|++++|.|++|+|||||+..+.+-
T Consensus 405 vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp SEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTS
T ss_pred ceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4443 356999999999999999999999987653
No 414
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=81.49 E-value=0.57 Score=41.35 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=19.9
Q ss_pred CceeeeecCCCCCchhhHHHHHH
Q psy2897 141 GGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
.-++.++|++|+|||+|+..+..
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999987754
No 415
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=81.48 E-value=0.68 Score=40.99 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=19.3
Q ss_pred eeeeecCCCCCchhhHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~ 163 (467)
++.|+|.+|+|||+|+..+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 799999999999999988765
No 416
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=81.41 E-value=0.68 Score=41.18 Aligned_cols=38 Identities=26% Similarity=0.406 Sum_probs=21.4
Q ss_pred cccceeeecccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 126 ETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 126 ~TGIr~ID~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
.||...+..+.+ -+--++.++|.+|+|||+|+..+..+
T Consensus 14 ~~~~~~~~~~~~-~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 14 GTENLYFQSMAK-SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp --------------CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CccccchhccCC-CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 344444444443 23468999999999999999988753
No 417
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=81.35 E-value=11 Score=34.03 Aligned_cols=47 Identities=17% Similarity=0.219 Sum_probs=30.2
Q ss_pred eeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHH
Q psy2897 144 VGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEM 192 (467)
Q Consensus 144 ~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~ 192 (467)
+-|-|.-|+||||.+..++....+.+-.+.+.-.=| +....+.+..+
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~--~t~~~~~ir~~ 49 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPG--GTETGEKIRKI 49 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--SSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC--CCcHHHHHHHH
Confidence 456799999999999999988766544444432211 33444444444
No 418
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=81.34 E-value=0.64 Score=41.26 Aligned_cols=22 Identities=36% Similarity=0.674 Sum_probs=19.7
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
|+.|+|.+|+|||+|+..+..+
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7899999999999999988753
No 419
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=81.29 E-value=0.69 Score=41.69 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.3
Q ss_pred ceeeeecCCCCCchhhHHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
-++.++|.+|+|||+|+..+..+
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999988764
No 420
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=81.28 E-value=0.63 Score=43.22 Aligned_cols=21 Identities=24% Similarity=0.506 Sum_probs=19.1
Q ss_pred eeeeecCCCCCchhhHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~ 163 (467)
|++|+|.+|+|||+|+..+..
T Consensus 31 ~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 789999999999999988764
No 421
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=81.21 E-value=0.66 Score=41.36 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=19.4
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
++.|+|.+|+|||+|+..+..+
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999887653
No 422
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=81.04 E-value=0.72 Score=40.48 Aligned_cols=22 Identities=27% Similarity=0.632 Sum_probs=19.7
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
++.++|.+|+|||+|+..+..+
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7999999999999999988753
No 423
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=80.98 E-value=0.58 Score=41.06 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=19.9
Q ss_pred ceeeeecCCCCCchhhHHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
-++.++|.+|+|||+|+..+..+
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999987653
No 424
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=80.97 E-value=0.45 Score=46.51 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=22.5
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
.|..+.++|++|+|||+|+..+++..
T Consensus 45 ~~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 45 TGGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp HTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 46789999999999999999887753
No 425
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=80.92 E-value=2.1 Score=40.55 Aligned_cols=52 Identities=8% Similarity=0.063 Sum_probs=34.5
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCCchHHHHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEM 192 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR~~ev~e~~~~~ 192 (467)
+|.-+.|.|++|+||||++..++......+-.+ +...--..+.++.+.++.+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~-~~~~rep~~t~~g~~ir~~ 77 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDH-ITRTREPGGTLLAEKLRAL 77 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCC-EEEEESSCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCe-eeeecCCCCCHHHHHHHHH
Confidence 678899999999999999999998765543231 2222112344555555554
No 426
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=80.89 E-value=0.73 Score=41.15 Aligned_cols=22 Identities=41% Similarity=0.487 Sum_probs=19.6
Q ss_pred ceeeeecCCCCCchhhHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~ 163 (467)
=++.|+|.+|+|||+|+..+..
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4789999999999999998765
No 427
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=80.85 E-value=0.69 Score=41.40 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=21.5
Q ss_pred cCceeeeecCCCCCchhhHHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+-=|+.|+|.+|+|||+|+..+..+
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 4458999999999999999988764
No 428
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=80.84 E-value=1.4 Score=42.52 Aligned_cols=38 Identities=13% Similarity=0.261 Sum_probs=30.4
Q ss_pred cccCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEE
Q psy2897 138 FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVF 175 (467)
Q Consensus 138 igrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~ 175 (467)
-.+++.+.|.|-.|+||||++..++...++.+..|.++
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vlli 75 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 75 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 34577889999999999999999999888765566665
No 429
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=80.65 E-value=0.61 Score=50.16 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=24.8
Q ss_pred cccCceeeeecCCCCCchhhHHHHHHHH
Q psy2897 138 FSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 138 igrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+..|+.++|+|++|+|||+|+..|+...
T Consensus 57 i~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 57 ANQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 5678999999999999999999888753
No 430
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=80.60 E-value=0.7 Score=41.87 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=19.9
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
++.|+|.+|+|||+|+..+..+
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 7899999999999999988764
No 431
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=80.51 E-value=0.68 Score=40.75 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=20.7
Q ss_pred cCceeeeecCCCCCchhhHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
+--++.++|.+|+|||+|+..+..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 455899999999999999988764
No 432
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=80.47 E-value=0.58 Score=42.10 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=19.9
Q ss_pred CceeeeecCCCCCchhhHHHHHH
Q psy2897 141 GGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
--++.++|++|+|||+|+..+..
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34899999999999999998754
No 433
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=80.47 E-value=0.77 Score=48.16 Aligned_cols=26 Identities=31% Similarity=0.472 Sum_probs=21.5
Q ss_pred cccCceeeeecCCCCCchhhHHHHHHHH
Q psy2897 138 FSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 138 igrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+.+| ++|+|++|+|||+|+..++...
T Consensus 48 ~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 48 MPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp CCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 3345 8999999999999999888753
No 434
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=80.46 E-value=0.72 Score=40.71 Aligned_cols=24 Identities=29% Similarity=0.607 Sum_probs=20.8
Q ss_pred CceeeeecCCCCCchhhHHHHHHH
Q psy2897 141 GGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
.-++.++|.+|+|||+|+..+..+
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 458999999999999999988753
No 435
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=80.38 E-value=0.61 Score=42.09 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=21.1
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 139 SKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
.+.=|+.++|.+|+|||+|+..+..+
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 34558999999999999999888764
No 436
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=80.31 E-value=0.5 Score=41.18 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=20.4
Q ss_pred ccCceeeeecCCCCCchhhHHHHH
Q psy2897 139 SKGGKVGLFGGAGVGKTVNMMELI 162 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~ 162 (467)
-+.-++.++|++|+|||+|+..+.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 356799999999999999997664
No 437
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=80.29 E-value=0.7 Score=40.46 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=21.4
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 139 SKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
-+.-++.++|.+|+|||+|+..+..+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34568999999999999999887653
No 438
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=80.25 E-value=0.87 Score=46.08 Aligned_cols=29 Identities=31% Similarity=0.353 Sum_probs=24.3
Q ss_pred cccCce--eeeecCCCCCchhhHHHHHHHHH
Q psy2897 138 FSKGGK--VGLFGGAGVGKTVNMMELINNIA 166 (467)
Q Consensus 138 igrGqr--~~I~g~~g~GKt~L~~~i~~~~~ 166 (467)
+..|++ +.|+|++|+||||++..++....
T Consensus 19 i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 19 IEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp TTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred hccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 446766 99999999999999998888543
No 439
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=80.22 E-value=0.78 Score=51.23 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=23.7
Q ss_pred cccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 138 FSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 138 igrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+..|..++|+|++|+|||+|+..++..
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 567889999999999999999988653
No 440
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=80.21 E-value=0.7 Score=40.81 Aligned_cols=24 Identities=21% Similarity=0.133 Sum_probs=20.3
Q ss_pred CceeeeecCCCCCchhhHHHHHHH
Q psy2897 141 GGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
.-++.|+|.+|+|||+|+..+..+
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999987653
No 441
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=80.09 E-value=0.62 Score=45.60 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=18.3
Q ss_pred eeeeecCCCCCchhhHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~ 163 (467)
+++|+|++|+|||||+..+..
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 349999999999999998764
No 442
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=80.03 E-value=0.6 Score=41.92 Aligned_cols=20 Identities=40% Similarity=0.428 Sum_probs=18.2
Q ss_pred eeeeecCCCCCchhhHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELI 162 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~ 162 (467)
++.++|.+|+|||+|+..++
T Consensus 25 ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999998764
No 443
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=80.03 E-value=0.67 Score=43.07 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.9
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
|+.|+|++|||||+|+..++.+
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 7999999999999999988754
No 444
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=80.00 E-value=0.76 Score=41.73 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.5
Q ss_pred ceeeeecCCCCCchhhHHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
-++.++|.+|+|||+|+..+..+
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999988764
No 445
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=79.99 E-value=0.66 Score=45.28 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=21.0
Q ss_pred CceeeeecCCCCCchhhHHHHHHHH
Q psy2897 141 GGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+.-+.|+|++|+|||+|+..+++..
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred CceEEEECCCCccHHHHHHHHHHhC
Confidence 3459999999999999999887743
No 446
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=79.98 E-value=0.72 Score=41.37 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=19.3
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
++.|+|.+|+|||+|+..+..+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 7999999999999999988754
No 447
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=79.98 E-value=0.82 Score=40.03 Aligned_cols=20 Identities=30% Similarity=0.318 Sum_probs=17.0
Q ss_pred ceeeeecCCCCCchhhHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMEL 161 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i 161 (467)
-|+.++|.+|+|||+|+..+
T Consensus 15 ~ki~vvG~~~~GKssL~~~l 34 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWI 34 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999998533
No 448
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=79.96 E-value=0.77 Score=41.10 Aligned_cols=22 Identities=32% Similarity=0.646 Sum_probs=19.6
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
++.|+|.+|+|||+|+..+..+
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999887653
No 449
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=79.82 E-value=0.91 Score=45.29 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=21.4
Q ss_pred cCceeeeecCCCCCchhhHHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
....++|+|++|+|||+|+..++..
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3556999999999999999988765
No 450
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=79.67 E-value=0.56 Score=55.28 Aligned_cols=30 Identities=27% Similarity=0.405 Sum_probs=26.5
Q ss_pred ccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 135 ICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 135 l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=+.+-+|+.++|+|++|+|||||+.-+.+-
T Consensus 438 sl~i~~G~~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 438 NLRVNAGQTVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp EEEECTTCEEEEEECSSSCHHHHHHHHTTS
T ss_pred EEeecCCcEEEEEecCCCcHHHHHHHhccc
Confidence 356899999999999999999999987763
No 451
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=79.63 E-value=0.8 Score=40.48 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=20.0
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
++.++|.+|+|||+|+..+..+
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999988764
No 452
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=79.48 E-value=0.8 Score=41.22 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=19.7
Q ss_pred ceeeeecCCCCCchhhHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~ 163 (467)
-++.++|.+|+|||+|+..+..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHhc
Confidence 3899999999999999988775
No 453
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=79.42 E-value=0.87 Score=45.46 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=21.5
Q ss_pred CceeeeecCCCCCchhhHHHHHHHH
Q psy2897 141 GGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
...+.|.|++|+|||+++..+++..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4569999999999999999888754
No 454
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=79.41 E-value=0.82 Score=40.64 Aligned_cols=24 Identities=38% Similarity=0.470 Sum_probs=20.3
Q ss_pred CceeeeecCCCCCchhhHHHHHHH
Q psy2897 141 GGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
.-++.++|.+|+|||+|+..+..+
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 348999999999999999988754
No 455
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=79.40 E-value=0.8 Score=44.23 Aligned_cols=22 Identities=36% Similarity=0.392 Sum_probs=19.5
Q ss_pred ceeeeecCCCCCchhhHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~ 163 (467)
-.++|.|++|+||||++..++.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999873
No 456
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=79.37 E-value=0.81 Score=41.29 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=19.0
Q ss_pred eeeeecCCCCCchhhHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~ 163 (467)
++.|+|.+|+|||+|+..+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 789999999999999987764
No 457
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=79.36 E-value=0.87 Score=40.72 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.1
Q ss_pred CceeeeecCCCCCchhhHHHHHH
Q psy2897 141 GGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
.=++.|+|.+|+|||+|+..+..
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34799999999999999988774
No 458
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=79.36 E-value=0.74 Score=43.86 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=19.0
Q ss_pred eeeeecCCCCCchhhHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~ 163 (467)
+++++|.+|+|||||+..+..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g 25 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTG 25 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 789999999999999998764
No 459
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=79.36 E-value=0.9 Score=42.32 Aligned_cols=26 Identities=19% Similarity=0.256 Sum_probs=22.5
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
||..+.|.|..|+||||++..++...
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 46788999999999999999888753
No 460
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=79.32 E-value=0.83 Score=44.21 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=21.6
Q ss_pred ceeeeecCCCCCchhhHHHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+-+.|.|++|+|||+|+..+++..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999999999998764
No 461
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=79.22 E-value=0.82 Score=42.19 Aligned_cols=21 Identities=33% Similarity=0.371 Sum_probs=18.9
Q ss_pred ceeeeecCCCCCchhhHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELI 162 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~ 162 (467)
-|+.|+|.+|+|||+|+..++
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~ 58 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFA 58 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999998775
No 462
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=79.15 E-value=0.74 Score=41.97 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.4
Q ss_pred ceeeeecCCCCCchhhHHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
=|+.|+|.+|+|||+|+..+..+
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 47999999999999999988764
No 463
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=79.09 E-value=0.89 Score=46.58 Aligned_cols=28 Identities=32% Similarity=0.459 Sum_probs=24.2
Q ss_pred ccccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 137 PFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 137 pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
-+..|.+++|+|.+|+|||||+..+...
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3677899999999999999999988764
No 464
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=79.00 E-value=0.81 Score=40.65 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=19.2
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
++.|+|.+|+|||+|+..+..+
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999987653
No 465
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=78.93 E-value=0.9 Score=41.36 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=20.8
Q ss_pred CceeeeecCCCCCchhhHHHHHHH
Q psy2897 141 GGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
+..++|.|++|+||||++..++..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999999999988764
No 466
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=78.91 E-value=0.86 Score=40.80 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=19.6
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
++.|+|.+|+|||+|+..+..+
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7999999999999999887753
No 467
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=78.76 E-value=1 Score=42.94 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=23.0
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHHHH
Q psy2897 139 SKGGKVGLFGGAGVGKTVNMMELINNIA 166 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~~~ 166 (467)
++...+.|.|++|+|||+++..+++...
T Consensus 36 ~~~~~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 36 KNIPHLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp TCCCCEEEESSSSSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECcCCcCHHHHHHHHHHHhc
Confidence 3334599999999999999999988753
No 468
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=78.61 E-value=1 Score=51.20 Aligned_cols=33 Identities=15% Similarity=-0.119 Sum_probs=28.5
Q ss_pred eecccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 132 IDLICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 132 ID~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
-|.-+.+.+|+.++|.|+.|+||||++.+++..
T Consensus 653 ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~ 685 (934)
T 3thx_A 653 NDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVI 685 (934)
T ss_dssp EEEEEETTTBCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccceeecCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 466677889999999999999999999998543
No 469
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=78.58 E-value=0.8 Score=40.84 Aligned_cols=24 Identities=25% Similarity=0.247 Sum_probs=20.5
Q ss_pred cCceeeeecCCCCCchhhHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
+.-++.++|++|+|||+|+..+..
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999987753
No 470
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=78.53 E-value=1.2 Score=49.89 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=18.7
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
-++++|+||+|||+|+..++..
T Consensus 240 GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 240 GILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp EEEEECCTTSCHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999888877653
No 471
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=78.27 E-value=1.9 Score=45.73 Aligned_cols=46 Identities=13% Similarity=0.205 Sum_probs=34.8
Q ss_pred cccccCceeeeecCCCCCchhhHHHHHHHHHhhC--CCEEEEEEecCCc
Q psy2897 136 CPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAH--SGLSVFTGVGERT 182 (467)
Q Consensus 136 ~pigrGqr~~I~g~~g~GKt~L~~~i~~~~~~~~--~dv~V~~liGeR~ 182 (467)
+.+.+|..++|.|.+|+|||+++..|+.++...+ .++.++ +++-++
T Consensus 162 ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~-liDpK~ 209 (512)
T 2ius_A 162 ADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFI-MIDPKM 209 (512)
T ss_dssp EEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEE-EECCSS
T ss_pred EEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEE-EECCch
Confidence 4577899999999999999999999988766543 245444 455444
No 472
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=78.25 E-value=0.54 Score=41.77 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=5.5
Q ss_pred CceeeeecCCCCCchhhHHHHHHH
Q psy2897 141 GGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
--++.++|.+|+|||+|+..+..+
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEC-----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 348999999999999999887754
No 473
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=78.21 E-value=0.93 Score=40.73 Aligned_cols=21 Identities=38% Similarity=0.480 Sum_probs=19.2
Q ss_pred eeeeecCCCCCchhhHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~ 163 (467)
++.|+|.+|+|||+|+..+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhh
Confidence 789999999999999998765
No 474
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=78.04 E-value=0.71 Score=40.75 Aligned_cols=23 Identities=26% Similarity=0.161 Sum_probs=20.3
Q ss_pred ceeeeecCCCCCchhhHHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
-++.++|.+|+|||+|+..+..+
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCG
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999987654
No 475
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=78.04 E-value=1.7 Score=46.89 Aligned_cols=52 Identities=15% Similarity=0.212 Sum_probs=34.5
Q ss_pred CceeeeecCCCCCchhhHHHHHHHHHhh-CCCEEEEEEecCCchHHHHHHHHHHhh
Q psy2897 141 GGKVGLFGGAGVGKTVNMMELINNIAKA-HSGLSVFTGVGERTREGNDFYHEMIEA 195 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~~~~~-~~dv~V~~liGeR~~ev~e~~~~~~~~ 195 (467)
.....|.||||+|||+++..++....+. ...+.+.+. ...-+.++.+.+.+.
T Consensus 195 ~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~---tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 195 RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAP---SNIAVDQLTEKIHQT 247 (624)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEES---SHHHHHHHHHHHHTT
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeC---cHHHHHHHHHHHHhc
Confidence 4578899999999999999999876652 223334332 334555566665443
No 476
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=77.99 E-value=0.89 Score=41.29 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=19.8
Q ss_pred ceeeeecCCCCCchhhHHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
-++.++|.+|+|||+|+..+..+
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 47999999999999999988753
No 477
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=77.91 E-value=0.96 Score=40.63 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=20.2
Q ss_pred ceeeeecCCCCCchhhHHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
-++.|+|.+|+|||+|+..+..+
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999888753
No 478
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=77.79 E-value=0.54 Score=40.37 Aligned_cols=24 Identities=21% Similarity=0.051 Sum_probs=19.4
Q ss_pred cCceeeeecCCCCCchhhHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
.+..+.|.|++|+|||+++..+..
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCC
T ss_pred CCCcEEEECCCCccHHHHHHHHHH
Confidence 356799999999999988876554
No 479
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=77.49 E-value=1.3 Score=46.11 Aligned_cols=29 Identities=31% Similarity=0.354 Sum_probs=24.1
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHHHHh
Q psy2897 139 SKGGKVGLFGGAGVGKTVNMMELINNIAK 167 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~~~~ 167 (467)
.+...+.|+|+||+|||+|+..++.....
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 44567899999999999999999887643
No 480
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=77.23 E-value=7.5 Score=35.59 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=30.2
Q ss_pred ceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEEEEecCC-chHHHHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGER-TREGNDFYHEM 192 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~~liGeR-~~ev~e~~~~~ 192 (467)
.=+-|-|.-|+||||++..++....+ +.++... -|. +....+.+..+
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~-~~~v~~~---~eP~~t~~g~~ir~~ 50 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT---REPGGVPTGEEIRKI 50 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE---ESSTTCHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHC-CCCEEEe---eCCCCChHHHHHHHH
Confidence 34678899999999999999887643 2233322 222 34555666654
No 481
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=77.22 E-value=1.1 Score=50.17 Aligned_cols=32 Identities=16% Similarity=-0.006 Sum_probs=26.5
Q ss_pred ecccccccCceeeeecCCCCCchhhHHHHHHHH
Q psy2897 133 DLICPFSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 133 D~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
|.-+. .+|+.++|.|+.|+||||++.+++...
T Consensus 600 disl~-~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 600 PLNLS-PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp EEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccccc-CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 33344 789999999999999999999988753
No 482
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=77.13 E-value=0.87 Score=41.80 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=19.8
Q ss_pred CceeeeecCCCCCchhhHHHHHH
Q psy2897 141 GGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
--++.++|.+|+|||+|+..+..
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34799999999999999987754
No 483
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=77.08 E-value=0.75 Score=47.41 Aligned_cols=34 Identities=21% Similarity=0.191 Sum_probs=28.2
Q ss_pred eeecccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 131 VIDLICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 131 ~ID~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
.-+.-+.+-.|..++|+|++|+|||||+..++..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 3455567888999999999999999999987653
No 484
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=76.99 E-value=0.44 Score=48.15 Aligned_cols=35 Identities=20% Similarity=0.242 Sum_probs=27.0
Q ss_pred cceeeec-ccccccCceeeeecCCCCCchhhHHHHHH
Q psy2897 128 GIKVIDL-ICPFSKGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 128 GIr~ID~-l~pigrGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
+++.++. =+.+.+| +.+|+|+.|+|||||+..|..
T Consensus 47 nf~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~ 82 (415)
T 4aby_A 47 NLATITQLELELGGG-FCAFTGETGAGKSIIVDALGL 82 (415)
T ss_dssp EETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHH
T ss_pred cccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHH
Confidence 4444543 3568999 999999999999999987643
No 485
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=76.87 E-value=0.97 Score=42.43 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.1
Q ss_pred CceeeeecCCCCCchhhHHHHHH
Q psy2897 141 GGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
--+++|+|.+|+|||+|+..+..
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999988764
No 486
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=76.78 E-value=1.1 Score=50.15 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=24.5
Q ss_pred cccCceeeeecCCCCCchhhHHHHHHHH
Q psy2897 138 FSKGGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 138 igrGqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
+-+|..++++|+||+|||+|+..++...
T Consensus 508 ~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 508 MTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred CCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 4578889999999999999999988764
No 487
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=76.46 E-value=0.54 Score=50.80 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=23.9
Q ss_pred eecccccccCc-----eeeeecCCCCCchhhHHHHHH
Q psy2897 132 IDLICPFSKGG-----KVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 132 ID~l~pigrGq-----r~~I~g~~g~GKt~L~~~i~~ 163 (467)
+|.|-.+|-+. .++|+|++|+|||||+..|+.
T Consensus 31 id~l~~~gv~~~l~lp~iaIvG~nGsGKSTLL~~I~G 67 (608)
T 3szr_A 31 IDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSG 67 (608)
T ss_dssp HHHHHHHSCCSSCCCCCEECCCCTTSCHHHHHHHHHS
T ss_pred HHHHHhCCCCCcccCCeEEEECCCCChHHHHHHHHhC
Confidence 55544444432 389999999999999998875
No 488
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=76.27 E-value=1.2 Score=40.63 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=19.6
Q ss_pred eeeeecCCCCCchhhHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~ 164 (467)
++.|+|.+|+|||+|+..+..+
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7899999999999999987753
No 489
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=76.27 E-value=2.4 Score=39.16 Aligned_cols=44 Identities=18% Similarity=0.192 Sum_probs=32.3
Q ss_pred cCceeeeecCCCCCchhhHHHHHHHHHhhCCCEEEE-EEecCCch
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVF-TGVGERTR 183 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~-~liGeR~~ 183 (467)
.|+-..|+|+.|+|||+.+.+.+.|....+..+.++ ..++.|..
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~ 63 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS 63 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGG
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccch
Confidence 588999999999999977777777765554455554 35666754
No 490
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=76.26 E-value=1.1 Score=44.86 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.4
Q ss_pred eeeeecCCCCCchhhHHHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
.++|.|++|+|||+|+..++...
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 58999999999999999988753
No 491
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=76.11 E-value=1.1 Score=42.96 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=19.0
Q ss_pred eeeeecCCCCCchhhHHHHHH
Q psy2897 143 KVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~ 163 (467)
.+.|.|.+|+||||++..++.
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998876
No 492
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=76.09 E-value=11 Score=37.62 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=20.1
Q ss_pred Cce-eeeecCCCCCchhhHHHHHHH
Q psy2897 141 GGK-VGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 141 Gqr-~~I~g~~g~GKt~L~~~i~~~ 164 (467)
|-+ ++|+|.+|+|||||+..+...
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCC
Confidence 445 899999999999999988754
No 493
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=77.77 E-value=0.55 Score=42.10 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=21.7
Q ss_pred ccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 139 SKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 139 grGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
.+.=++.++|.+|+|||+|+..+..+
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 34568999999999999999887654
No 494
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=75.56 E-value=0.88 Score=51.59 Aligned_cols=33 Identities=9% Similarity=-0.109 Sum_probs=28.1
Q ss_pred eecccccccCceeeeecCCCCCchhhHHHHHHH
Q psy2897 132 IDLICPFSKGGKVGLFGGAGVGKTVNMMELINN 164 (467)
Q Consensus 132 ID~l~pigrGqr~~I~g~~g~GKt~L~~~i~~~ 164 (467)
-|.-+.+.+|+.++|.||.|+||||++.+++..
T Consensus 664 ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 664 NNTDLSEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp EEEEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred ccccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 355566788999999999999999999998753
No 495
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=75.48 E-value=1.2 Score=39.74 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=18.2
Q ss_pred CceeeeecCCCCCchhhHHHHH
Q psy2897 141 GGKVGLFGGAGVGKTVNMMELI 162 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~ 162 (467)
--|+.++|.+|+|||+|+..+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~ 41 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVF 41 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3479999999999999987543
No 496
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=75.45 E-value=0.83 Score=43.59 Aligned_cols=22 Identities=18% Similarity=0.519 Sum_probs=20.0
Q ss_pred ceeeeecCCCCCchhhHHHHHH
Q psy2897 142 GKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 142 qr~~I~g~~g~GKt~L~~~i~~ 163 (467)
-++.|+|.+++|||+|+..++.
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g 48 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVG 48 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHT
T ss_pred CeEEEEeCCCCCHHHHHHHHHC
Confidence 4899999999999999998875
No 497
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=75.45 E-value=1.3 Score=40.62 Aligned_cols=33 Identities=30% Similarity=0.384 Sum_probs=26.7
Q ss_pred eeeeecCCCCCchhhHHHHHHHHHhhCCCEEEE
Q psy2897 143 KVGLFGGAGVGKTVNMMELINNIAKAHSGLSVF 175 (467)
Q Consensus 143 r~~I~g~~g~GKt~L~~~i~~~~~~~~~dv~V~ 175 (467)
|+.|.|-.|+||||++..++...++.+..|.++
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~la~~g~~Vlli 34 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIMASDYDKIYAV 34 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 577788999999999999999887665555555
No 498
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=75.38 E-value=1.4 Score=46.18 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=21.9
Q ss_pred CceeeeecCCCCCchhhHHHHHHHH
Q psy2897 141 GGKVGLFGGAGVGKTVNMMELINNI 165 (467)
Q Consensus 141 Gqr~~I~g~~g~GKt~L~~~i~~~~ 165 (467)
..-+.|.|++|+|||+++..+++..
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999888754
No 499
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=75.38 E-value=0.84 Score=40.14 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=20.0
Q ss_pred cCceeeeecCCCCCchhhHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELI 162 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~ 162 (467)
+--++.++|.+|+|||+|+..+.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999998764
No 500
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=75.24 E-value=1.2 Score=44.11 Aligned_cols=24 Identities=38% Similarity=0.578 Sum_probs=22.0
Q ss_pred cCceeeeecCCCCCchhhHHHHHH
Q psy2897 140 KGGKVGLFGGAGVGKTVNMMELIN 163 (467)
Q Consensus 140 rGqr~~I~g~~g~GKt~L~~~i~~ 163 (467)
.|.-++|.|+||+|||+++..++.
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 588899999999999999999876
Done!