RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2897
(467 letters)
>gnl|CDD|236447 PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated.
Length = 463
Score = 948 bits (2454), Expect = 0.0
Identities = 338/469 (72%), Positives = 388/469 (82%), Gaps = 11/469 (2%)
Query: 1 MSDGKIIQCIGSVVDVEFPHNMVPKIYNALKIEN---SELTLEVQQQLGDGIVRTIVLGT 57
M+ GKI+Q IG VVDVEFP +PKIYNAL++E +L LEV Q LGDG+VRTI +G+
Sbjct: 1 MNTGKIVQVIGPVVDVEFPRGELPKIYNALEVEKGDGKKLVLEVAQHLGDGVVRTIAMGS 60
Query: 58 SEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEE 117
++GL RG V +TG PI +PVGKATLGRI NVLG+PIDEKG I + IHR PS+EE
Sbjct: 61 TDGLVRGMEVIDTGAPISVPVGKATLGRIFNVLGEPIDEKGPIGAEERWPIHRKAPSFEE 120
Query: 118 LSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTG 177
LS+ E+LETGIKVIDL+ P++KGGK+GLFGGAGVGKTV + ELINNIAK H G SVF G
Sbjct: 121 LSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAG 180
Query: 178 VGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFR 237
VGERTREGND YHEM E+ V++ K ++V+GQMNEP G RLRVALTGLT+AE FR
Sbjct: 181 VGERTREGNDLYHEMKESGVLD-------KTALVFGQMNEPPGARLRVALTGLTMAEYFR 233
Query: 238 D-EGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSI 296
D EG+DVL FIDNI+R+T AG+EVSALLGRMPSAVGYQPTLA EMG LQERI STKKGSI
Sbjct: 234 DVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSI 293
Query: 297 TSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVG 356
TS+QAVYVPADDLTDP+PATTFAHLD+T VLSR IA LGIYPA+DPLDSTSR LDPLIVG
Sbjct: 294 TSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRILDPLIVG 353
Query: 357 KKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVARARKMQRFLSQPFHVAEVF 416
++HY +AR VQ LQRYKEL+DII+ILGMDELS EDKL VARARK+QRFLSQPF VAE F
Sbjct: 354 EEHYDVAREVQQILQRYKELQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFFVAEQF 413
Query: 417 TGKSGKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAIKKSKKL 465
TG GKYV LKDT+ GF I GE D++PEQAFYMVGTI+EAI+K+KKL
Sbjct: 414 TGSPGKYVPLKDTIRGFKEILEGEYDHLPEQAFYMVGTIEEAIEKAKKL 462
>gnl|CDD|223133 COG0055, AtpD, F0F1-type ATP synthase, beta subunit [Energy
production and conversion].
Length = 468
Score = 866 bits (2239), Expect = 0.0
Identities = 333/474 (70%), Positives = 390/474 (82%), Gaps = 14/474 (2%)
Query: 1 MSDGKIIQCIGSVVDVEFPHN-MVPKIYNALKIENS---ELTLEVQQQLGDGIVRTIVLG 56
M+ GK++Q IG VVDVEFP +P+IYNAL+++N L LEV Q LGD +VRTI +G
Sbjct: 1 MNKGKVVQVIGPVVDVEFPEEDELPEIYNALEVQNGNQGTLVLEVAQHLGDNVVRTIAMG 60
Query: 57 TSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYV--SSIHRTPPS 114
+++GL RG V +TGKPI +PVGK TLGRI NVLG+PIDEKG I + IHR PS
Sbjct: 61 STDGLVRGLEVIDTGKPISVPVGKGTLGRIFNVLGEPIDEKGPIKAEDFEKWPIHRKAPS 120
Query: 115 YEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSV 174
+EELS+ E+LETGIKVIDL+ P++KGGK+GLFGGAGVGKTV + ELINNIAK H G SV
Sbjct: 121 FEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSV 180
Query: 175 FTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAE 234
F GVGERTREGND YHEM E+ V+ K ++V+GQMNEP G R+RVALTGLT+AE
Sbjct: 181 FAGVGERTREGNDLYHEMKESGVL-------DKTALVFGQMNEPPGARMRVALTGLTMAE 233
Query: 235 GFRD-EGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKK 293
FRD EG+DVL FIDNI+R+T AG+EVSALLGRMPSAVGYQPTLA EMG LQERI STKK
Sbjct: 234 YFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKK 293
Query: 294 GSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPL 353
GSITS+QAVYVPADDLTDP+PATTFAHLD+T VLSR IA+LGIYPA+DPLDSTSR LDP
Sbjct: 294 GSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAALGIYPAVDPLDSTSRALDPK 353
Query: 354 IVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVARARKMQRFLSQPFHVA 413
IVG++HY++AR VQS LQRYKEL+DII+ILGMDELS EDKL VARARK+QRFLSQPF VA
Sbjct: 354 IVGEEHYEVAREVQSILQRYKELQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFFVA 413
Query: 414 EVFTGKSGKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAIKKSKKLMK 467
EVFTG GKYV LKDT+ GF I G+ D++PEQAFYMVG+I+EA++K+KKL K
Sbjct: 414 EVFTGSPGKYVPLKDTIRGFKRILEGKYDHLPEQAFYMVGSIEEAVEKAKKLGK 467
>gnl|CDD|211621 TIGR01039, atpD, ATP synthase, F1 beta subunit. The sequences of
ATP synthase F1 alpha and beta subunits are related and
both contain a nucleotide-binding site for ATP and ADP.
They have a common amino terminal domain but vary at the
C-terminus. The beta chain has catalytic activity, while
the alpha chain is a regulatory subunit. Proton
translocating ATP synthase, F1 beta subunit is
homologous to proton translocating ATP synthase
archaeal/vacuolar(V1), A subunit [Energy metabolism,
ATP-proton motive force interconversion].
Length = 461
Score = 812 bits (2098), Expect = 0.0
Identities = 329/466 (70%), Positives = 382/466 (81%), Gaps = 11/466 (2%)
Query: 4 GKIIQCIGSVVDVEFPHNMVPKIYNALKIEN---SELTLEVQQQLGDGIVRTIVLGTSEG 60
GK++Q IG VVDVEF +P+IYNALK++N SELTLEV Q LGD VRTI +G+++G
Sbjct: 3 GKVVQVIGPVVDVEFEQGELPRIYNALKVQNRAESELTLEVAQHLGDDTVRTIAMGSTDG 62
Query: 61 LRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSS 120
L RG V +TG PI +PVGK TLGRI NVLG+PIDEKG I K IHR PS+EE S+
Sbjct: 63 LVRGLEVIDTGAPISVPVGKETLGRIFNVLGEPIDEKGPIPAKERWPIHRKAPSFEEQST 122
Query: 121 SQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGE 180
E+LETGIKVIDL+ P++KGGK+GLFGGAGVGKTV + ELINNIAK H G SVF GVGE
Sbjct: 123 KVEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGE 182
Query: 181 RTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDE- 239
RTREGND YHEM E+ V++ K ++VYGQMNEP G R+RVALTGLT+AE FRDE
Sbjct: 183 RTREGNDLYHEMKESGVID-------KTALVYGQMNEPPGARMRVALTGLTMAEYFRDEQ 235
Query: 240 GKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSI 299
G+DVL FIDNI+R+T AG+EVSALLGRMPSAVGYQPTLA EMG LQERI STK GSITS+
Sbjct: 236 GQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGELQERITSTKTGSITSV 295
Query: 300 QAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKH 359
QAVYVPADDLTDP+PATTFAHLD+T VLSR IA LGIYPA+DPLDSTSR LDP +VG++H
Sbjct: 296 QAVYVPADDLTDPAPATTFAHLDATTVLSRKIAELGIYPAVDPLDSTSRLLDPSVVGEEH 355
Query: 360 YKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVARARKMQRFLSQPFHVAEVFTGK 419
Y +AR VQ LQRYKEL+DII+ILGMDELS EDKL V RAR++QRFLSQPF VAEVFTG+
Sbjct: 356 YDVARGVQQILQRYKELQDIIAILGMDELSEEDKLTVERARRIQRFLSQPFFVAEVFTGQ 415
Query: 420 SGKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAIKKSKKL 465
GKYV LKDT+ GF I G+ D++PEQAFYMVGTI+E ++K+KKL
Sbjct: 416 PGKYVPLKDTIRGFKEILEGKYDHLPEQAFYMVGTIEEVVEKAKKL 461
>gnl|CDD|214349 CHL00060, atpB, ATP synthase CF1 beta subunit.
Length = 494
Score = 768 bits (1984), Expect = 0.0
Identities = 302/470 (64%), Positives = 367/470 (78%), Gaps = 8/470 (1%)
Query: 4 GKIIQCIGSVVDVEFPHNMVPKIYNALKIENSE-------LTLEVQQQLGDGIVRTIVLG 56
G+I Q IG V+DV FP +P IYNAL ++ + +T EVQQ LG+ VR + +
Sbjct: 17 GRITQIIGPVLDVAFPPGKMPNIYNALVVKGRDTAGQEINVTCEVQQLLGNNRVRAVAMS 76
Query: 57 TSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYE 116
++GL RG V +TG P+ +PVG ATLGRI NVLG+P+D G + + S IHR+ P++
Sbjct: 77 ATDGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDTRTTSPIHRSAPAFI 136
Query: 117 ELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFT 176
+L + + ETGIKV+DL+ P+ +GGK+GLFGGAGVGKTV +MELINNIAKAH G+SVF
Sbjct: 137 QLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG 196
Query: 177 GVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGF 236
GVGERTREGND Y EM E+ V+N +SKV++VYGQMNEP G R+RV LT LT+AE F
Sbjct: 197 GVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYF 256
Query: 237 RDEGK-DVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGS 295
RD K DVL FIDNI+R+ AG+EVSALLGRMPSAVGYQPTL+ EMG LQERI STK+GS
Sbjct: 257 RDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKEGS 316
Query: 296 ITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIV 355
ITSIQAVYVPADDLTDP+PATTFAHLD+T VLSR +A+ GIYPA+DPLDSTS L P IV
Sbjct: 317 ITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIV 376
Query: 356 GKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVARARKMQRFLSQPFHVAEV 415
G++HY+ A+ V+ TLQRYKEL+DII+ILG+DELS ED+L VARARK++RFLSQPF VAEV
Sbjct: 377 GEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEV 436
Query: 416 FTGKSGKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAIKKSKKL 465
FTG GKYV L +T+ GF LI SGELD +PEQAFY+VG IDEA K+ L
Sbjct: 437 FTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEATAKAANL 486
>gnl|CDD|183615 PRK12597, PRK12597, F0F1 ATP synthase subunit beta; Provisional.
Length = 461
Score = 744 bits (1924), Expect = 0.0
Identities = 277/469 (59%), Positives = 341/469 (72%), Gaps = 12/469 (2%)
Query: 1 MSDGKIIQCIGSVVDVEFPHNMVPKIYNALKIEN--SELTLEVQQQLGDGIVRTIVLGTS 58
M G+II+ G VVDVEF +P I AL + + LEV+Q L + VR I LG++
Sbjct: 1 MMIGRIIKIRGDVVDVEFEEGALPPINQALTVHDDGGPTLLEVKQHLDETTVRAIALGST 60
Query: 59 EGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNIS-NKYVSSIHRTPPSYEE 117
GL RG V+NTG PI +PVG+A LGR+++VLG+P+D + + IH T P E
Sbjct: 61 SGLARGDEVRNTGGPIEVPVGEAVLGRLLDVLGEPLDGGPPLPAEERRP-IHSTIPPLAE 119
Query: 118 LSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTG 177
+S E+LETGIKVIDL+CP +KGGK GLFGGAGVGKTV MMELI NI+K HSG SVF G
Sbjct: 120 QDTSTEILETGIKVIDLLCPIAKGGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAG 179
Query: 178 VGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFR 237
VGER+REG++ YHEM E+ V+ K MVYGQMNEP G R+RV LTGLTIAE R
Sbjct: 180 VGERSREGHELYHEMKESGVL-------DKTVMVYGQMNEPPGARMRVVLTGLTIAEYLR 232
Query: 238 DE-GKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSI 296
DE +DVL FIDNI+R+ AG+EVS LLGRMPS VGYQPTLA E+ LQERIASTK GSI
Sbjct: 233 DEEKEDVLLFIDNIFRFVQAGSEVSGLLGRMPSRVGYQPTLASEVAELQERIASTKNGSI 292
Query: 297 TSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVG 356
TSIQAVYVPADDLTDP+ F+HLDSTVVLSR A+ GIYPAIDPL S+S LDPL+VG
Sbjct: 293 TSIQAVYVPADDLTDPAAVAIFSHLDSTVVLSRAQAAKGIYPAIDPLASSSNLLDPLVVG 352
Query: 357 KKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVARARKMQRFLSQPFHVAEVF 416
++HY A V+ LQRYKEL D+I+ILG+DELS EDK++V RAR++QRFL+QPF V E F
Sbjct: 353 ERHYDAAIEVKRILQRYKELEDVIAILGIDELSAEDKIIVKRARQLQRFLTQPFFVTEAF 412
Query: 417 TGKSGKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAIKKSKKL 465
TG+ G V L++TL+ I +GE D+ E++FYM+G++D+ K +
Sbjct: 413 TGEPGVSVPLEETLDSCERILNGEYDDWSEESFYMIGSLDDLRTKEEAG 461
>gnl|CDD|132348 TIGR03305, alt_F1F0_F1_bet, alternate F1F0 ATPase, F1 subunit beta.
A small number of taxonomically diverse prokaryotic
species have what appears to be a second ATP synthase,
in addition to the normal F1F0 ATPase in bacteria and
A1A0 ATPase in archaea. These enzymes use ion gradients
to synthesize ATP, and in principle may run in either
direction. This model represents the F1 beta subunit of
this apparent second ATP synthase.
Length = 449
Score = 546 bits (1409), Expect = 0.0
Identities = 234/457 (51%), Positives = 314/457 (68%), Gaps = 10/457 (2%)
Query: 4 GKIIQCIGSVVDVEFPHNMVPKIYNALKI-ENSELTLEVQQQLGDGIVRTIVLGTSEGLR 62
G ++ GS+VDV F + P I++ L+ E+ +EV QL VR I L ++GL
Sbjct: 1 GHVVAVRGSIVDVRFDGEL-PAIHSVLRAGREGEVVVEVLSQLDAHHVRGIALTPTQGLA 59
Query: 63 RGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQ 122
RG V+++G P+ PVGK TL R+ +V G+ ID + + S+H+ PP+ SS
Sbjct: 60 RGMPVRDSGGPLKAPVGKPTLSRMFDVFGNTIDRREPPKDVEWRSVHQAPPTLTRRSSKS 119
Query: 123 ELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERT 182
E+ ETGIK ID++ P +GGK GLFGGAGVGKTV + E+I+N+ H G+S+F G+GER
Sbjct: 120 EVFETGIKAIDVLVPLERGGKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCGIGERC 179
Query: 183 REGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRD-EGK 241
REG + Y EM EA V++ MV+GQMNEP G R RV T LT+AE FRD E +
Sbjct: 180 REGEELYREMKEAGVLD-------NTVMVFGQMNEPPGARFRVGHTALTMAEYFRDDEKQ 232
Query: 242 DVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQA 301
DVL IDNI+R+ AG+EVS LLG+MPS +GYQPTL E+ L+ERIA+T G+ITSIQA
Sbjct: 233 DVLLLIDNIFRFIQAGSEVSGLLGQMPSRLGYQPTLGTELAELEERIATTSDGAITSIQA 292
Query: 302 VYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYK 361
VYVPADD TDP+ TF+HL +++VLSR AS G+YPAIDPL STS+ P IVG++HY
Sbjct: 293 VYVPADDFTDPAAVHTFSHLSASLVLSRKRASEGLYPAIDPLQSTSKMATPGIVGERHYD 352
Query: 362 IARLVQSTLQRYKELRDIISILGMDELSPEDKLLVARARKMQRFLSQPFHVAEVFTGKSG 421
+AR V+ TL +Y+EL+DII++LG+++LS ED+ +V RAR+++RFL+QPF E FTG G
Sbjct: 353 LAREVRQTLAQYEELKDIIAMLGLEQLSREDRRVVNRARRLERFLTQPFFTTEQFTGMKG 412
Query: 422 KYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEA 458
K VSL+D L+G I + E + PE+ YM+G IDEA
Sbjct: 413 KTVSLEDALDGCERILNDEFQDYPERDLYMIGKIDEA 449
>gnl|CDD|238553 cd01133, F1-ATPase_beta, F1 ATP synthase beta subunit,
nucleotide-binding domain. The F-ATPase is found in
bacterial plasma membranes, mitochondrial inner
membranes and in chloroplast thylakoid membranes. It has
also been found in the archaea Methanosarcina barkeri.
It uses a proton gradient to drive ATP synthesis and
hydrolyzes ATP to build the proton gradient. The
extrinisic membrane domain, F1, is composed of alpha,
beta, gamma, delta and epsilon subunits with a
stoichiometry of 3:3:1:1:1. The beta subunit of ATP
synthase is catalytic.
Length = 274
Score = 537 bits (1386), Expect = 0.0
Identities = 209/281 (74%), Positives = 232/281 (82%), Gaps = 8/281 (2%)
Query: 73 PIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVI 132
PI +PVG TLGRI NVLG+PIDE+G I K IHR P + E S+ E+LETGIKVI
Sbjct: 1 PISVPVGPETLGRIFNVLGEPIDERGPIKTKKTWPIHREAPEFVEQSTKTEILETGIKVI 60
Query: 133 DLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEM 192
DL+ P++KGGK+GLFGGAGVGKTV +MELINNIAKAH G SVF GVGERTREGND YHEM
Sbjct: 61 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEM 120
Query: 193 IEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRD-EGKDVLFFIDNIY 251
E+ V SK ++VYGQMNEP G R RVALTGLT+AE FRD EG+DVL FIDNI+
Sbjct: 121 KESGV-------LSKTALVYGQMNEPPGARARVALTGLTMAEYFRDEEGQDVLLFIDNIF 173
Query: 252 RYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQAVYVPADDLTD 311
R+T AG+EVSALLGRMPSAVGYQPTLA EMG LQERI STKKGSITS+QAVYVPADDLTD
Sbjct: 174 RFTQAGSEVSALLGRMPSAVGYQPTLATEMGALQERITSTKKGSITSVQAVYVPADDLTD 233
Query: 312 PSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDP 352
P+PATTFAHLD+T VLSR IA LGIYPA+DPLDSTSR LDP
Sbjct: 234 PAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRILDP 274
>gnl|CDD|215651 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family,
nucleotide-binding domain. This family includes the ATP
synthase alpha and beta subunits, the ATP synthase
associated with flagella and the termination factor Rho.
Length = 213
Score = 247 bits (633), Expect = 3e-80
Identities = 89/222 (40%), Positives = 124/222 (55%), Gaps = 10/222 (4%)
Query: 127 TGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGN 186
TGI+ IDL+ P KG ++G+FGG+G GKTV + + N + V+ +GER RE
Sbjct: 1 TGIRAIDLLLPIGKGQRIGIFGGSGTGKTVLLGMIARNAKA--DVVEVYVLIGERGREVA 58
Query: 187 DFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFF 246
+F E++ + + +V +EP R T LTIAE FRD+GKDVL
Sbjct: 59 EFIEELLGEGALK-------RTVVVAATSDEPPAERYLAPYTALTIAEYFRDQGKDVLLL 111
Query: 247 IDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTK-KGSITSIQAVYVP 305
+D++ R+ A E+S LLG P GY +L ++ L ER + GSIT++ V VP
Sbjct: 112 LDSLTRFARALREISLLLGEPPGREGYPGSLFSDLARLLERAGKVEGGGSITALPTVLVP 171
Query: 306 ADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTS 347
D+TDP P T + D +VLSR++A GIYPAID L S S
Sbjct: 172 GGDITDPIPDNTISITDGQIVLSRELAERGIYPAIDILLSVS 213
>gnl|CDD|224079 COG1157, FliI, Flagellar biosynthesis/type III secretory pathway
ATPase [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 441
Score = 239 bits (611), Expect = 6e-74
Identities = 128/358 (35%), Positives = 191/358 (53%), Gaps = 16/358 (4%)
Query: 55 LGTSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPS 114
EG+ G V TG+P+ +PVG A LGR+++ LG P+D G + PP+
Sbjct: 77 FEPVEGVSPGAEVVPTGRPLSVPVGDALLGRVLDGLGRPLDGGGLPDGTERRPLDAPPPN 136
Query: 115 YEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSV 174
+ +E L+TG++ ID + KG ++G+F G+GVGK+ + + N +A ++V
Sbjct: 137 PLKRRPIEEPLDTGVRAIDGLLTCGKGQRIGIFAGSGVGKSTLLGMIARN-TEAD--VNV 193
Query: 175 FTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAE 234
+GER RE +F IE K + + ++S V V +E + RL+ A T TIAE
Sbjct: 194 IALIGERGREVREF----IE-KDLGEEGLKRSVV--VVATSDESALMRLKAAFTATTIAE 246
Query: 235 GFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKG 294
FRD+GK VL +D++ R+ +A E+ G P+ GY P++ E+ L ER + KG
Sbjct: 247 YFRDQGKRVLLIMDSLTRFAMAQREIGLAAGEPPATKGYPPSVFSELPRLLERAGNGDKG 306
Query: 295 SITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLI 354
SIT+ V V DD+ DP + LD +VLSR +A G YPAID L S SR + P I
Sbjct: 307 SITAFYTVLVEGDDMNDPIADEVRSILDGHIVLSRALAEAGHYPAIDVLASISR-VMPQI 365
Query: 355 VGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLL---VARARKMQRFLSQP 409
V ++H K AR ++ L RY+E D+I I D L + K+++FL Q
Sbjct: 366 VSEEHRKAARRLRQLLSRYEENEDLIRIGAY--QKGSDPELDKAIKLYPKIEQFLKQG 421
>gnl|CDD|233237 TIGR01026, fliI_yscN, ATPase FliI/YscN family. This family of
ATPases demonstrates extensive homology with ATP
synthase F1, beta subunit. It is a mixture of members
with two different protein functions. The first group is
exemplified by Salmonella typhimurium FliI protein. It
is needed for flagellar assembly, its ATPase activity is
required for flagellation, and it may be involved in a
specialized protein export pathway that proceeds without
signal peptide cleavage. The second group of proteins
function in the export of virulence proteins;
exemplified by Yersinia sp. YscN protein an ATPase
involved in the type III secretory pathway for the
antihost Yops proteins [Energy metabolism, ATP-proton
motive force interconversion].
Length = 440
Score = 223 bits (570), Expect = 5e-68
Identities = 128/387 (33%), Positives = 202/387 (52%), Gaps = 33/387 (8%)
Query: 40 EVQQQLGDGIVRTIVLGTS------------EGLRRGTIVKNTGKPIMIPVGKATLGRII 87
++++ +G + V+G + EG+R G+ V TG+ + I VG LGR++
Sbjct: 49 LIERRGSEGRLVAEVVGFNGEFVFLMPYEEVEGVRPGSKVLATGEGLSIKVGDGLLGRVL 108
Query: 88 NVLGDPIDEKGN-ISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGL 146
+ LG PID KG + N + P + + + +E+L TG++ ID + KG ++G+
Sbjct: 109 DGLGKPIDGKGKFLDNVETEGLITAPINPLKRAPIREILSTGVRSIDGLLTVGKGQRIGI 168
Query: 147 FGGAGVGKTVNMMELINNIAK-AHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEK 205
F G+GVGK+ L+ IA+ + ++V +GER RE +F IE +L +
Sbjct: 169 FAGSGVGKST----LLGMIARNTEADVNVIALIGERGREVREF----IEH---DLGEEGL 217
Query: 206 SKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLG 265
+ +V ++ RL+ A IAE FRD+GKDVL +D++ R+ +A E+ G
Sbjct: 218 KRSVVVVATSDQSPLLRLKGAYVATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAG 277
Query: 266 RMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQAVYVPADDLTDPSPATTFAHLDSTV 325
P+ GY P++ + L ER ++ KGSIT+ V V DD+ +P + LD +
Sbjct: 278 EPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMNEPIADSVRGILDGHI 337
Query: 326 VLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISI--- 382
VLSR +A G YPAID L S SR L IV ++H + AR + L +YK+ D+I I
Sbjct: 338 VLSRALAQRGHYPAIDVLASISR-LMTAIVSEEHRRAARKFRELLSKYKDNEDLIRIGAY 396
Query: 383 -LGMDELSPEDKLLVARARKMQRFLSQ 408
G D E +A+ K++RFL Q
Sbjct: 397 QRGSD---RELDFAIAKYPKLERFLKQ 420
>gnl|CDD|211826 TIGR03497, FliI_clade2, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively [Cellular processes,
Chemotaxis and motility].
Length = 413
Score = 212 bits (541), Expect = 5e-64
Identities = 133/382 (34%), Positives = 211/382 (55%), Gaps = 18/382 (4%)
Query: 4 GKIIQCIGSVVDVEFPHNMVPKIYNALKIENSELTLEVQQQLG--DGIVRTIVLGTSEGL 61
GK+ + IG ++ + P + ++ + L + EV +G + V + LG EG+
Sbjct: 1 GKVTRVIGLTIESKGPKAKIGELCSILTKGGKPVLAEV---VGFKEENVLLMPLGEVEGI 57
Query: 62 RRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSS 121
G++V TG+P+ I VGK LGR+++ LG P+D +G I + + PP+ +
Sbjct: 58 GPGSLVIATGRPLAIKVGKGLLGRVLDGLGRPLDGEGPIIGEEPYPLDNPPPNPLKRPRI 117
Query: 122 QELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAK-AHSGLSVFTGVGE 180
++ LETGIK ID + KG +VG+F G+GVGK+ L+ IA+ A + ++V +GE
Sbjct: 118 RDPLETGIKAIDGLLTIGKGQRVGIFAGSGVGKST----LLGMIARNAKADINVIALIGE 173
Query: 181 RTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEG 240
R RE DF IE +L + + +V ++P+ RL+ A T IAE FRD+G
Sbjct: 174 RGREVRDF----IEK---DLGEEGLKRSVVVVATSDQPALMRLKAAFTATAIAEYFRDQG 226
Query: 241 KDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQ 300
KDVL +D++ R+ +A E+ +G P+ GY P++ + L ER +++KGSIT
Sbjct: 227 KDVLLMMDSVTRFAMAQREIGLAVGEPPTTRGYTPSVFSLLPKLLERSGNSQKGSITGFY 286
Query: 301 AVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHY 360
V V DD+ +P LD +VLSR++A+ YPAID L S SR + IV ++H
Sbjct: 287 TVLVDGDDMNEPIADAVRGILDGHIVLSRELAAKNHYPAIDVLASVSR-VMNEIVSEEHK 345
Query: 361 KIARLVQSTLQRYKELRDIISI 382
++A ++ L YKE D+I+I
Sbjct: 346 ELAGKLRELLAVYKEAEDLINI 367
>gnl|CDD|238556 cd01136, ATPase_flagellum-secretory_path_III, Flagellum-specific
ATPase/type III secretory pathway virulence-related
protein. This group of ATPases are responsible for the
export of flagellum and virulence-related proteins. The
bacterial flagellar motor is similar to the F0F1-ATPase,
in that they both are proton driven rotary molecular
devices. However, the main function of the bacterial
flagellar motor is to rotate the flagellar filament for
cell motility. Intracellular pathogens such as
Salmonella and Chlamydia also have proteins which are
similar to the flagellar-specific ATPase, but function
in the secretion of virulence-related proteins via the
type III secretory pathway.
Length = 326
Score = 207 bits (529), Expect = 3e-63
Identities = 120/342 (35%), Positives = 184/342 (53%), Gaps = 22/342 (6%)
Query: 73 PIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVI 132
P+ +PVG A LGR+++ G+P+D KG + + + RTPP+ + E+L TG++ I
Sbjct: 1 PLSVPVGDALLGRVLDAFGEPLDGKGPLGKEVRYPLLRTPPNPLKRRPIDEVLPTGVRAI 60
Query: 133 DLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAK-AHSGLSVFTGVGERTREGNDFYHE 191
D + KG ++G+F G+GVGK+ L+ IA+ + ++V +GER RE +F +
Sbjct: 61 DGLLTVGKGQRLGIFAGSGVGKST----LLGMIARGTTADVNVIALIGERGREVREFIEK 116
Query: 192 MIEAKVVNLDKPEKSKVS-MVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNI 250
+ E K S +V +E R++ A T IAE FRD+GKDVL +D++
Sbjct: 117 DL--------GEEGLKRSVVVVATSDESPLLRVKAAYTATAIAEYFRDQGKDVLLLMDSL 168
Query: 251 YRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQAVYVPADDLT 310
R+ +A E+ G P+ GY P++ + L ER ++ KGSIT+ V V DDL
Sbjct: 169 TRFAMAQREIGLAAGEPPTTKGYPPSVFALLPRLLERAGNSDKGSITAFYTVLVEGDDLN 228
Query: 311 DPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTL 370
+P + LD +VLSR +A+ G YPAID L S SR L +V +H + AR ++ L
Sbjct: 229 EPIADAVRSILDGHIVLSRALAAAGHYPAIDVLKSISR-LMNAVVTPEHKEAARKLRELL 287
Query: 371 QRYKELRDIISI----LGMDELSPEDKLLVARARKMQRFLSQ 408
Y+E+ D+I I G D PE + K++ FL Q
Sbjct: 288 SAYQEVEDLIRIGAYKKGSD---PEVDEAIKLLPKIEAFLKQ 326
>gnl|CDD|233918 TIGR02546, III_secr_ATP, type III secretion apparatus
H+-transporting two-sector ATPase. [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 422
Score = 208 bits (532), Expect = 1e-62
Identities = 126/416 (30%), Positives = 203/416 (48%), Gaps = 25/416 (6%)
Query: 4 GKIIQCIGSVVDVEFPHNMVPKIYNALKIENSELTLEVQQQLGDGIVRTIVLGTSEGLRR 63
G++ + G+++ P V ++ + + S+L EV GD + + LG G+
Sbjct: 7 GRVTEVSGTLLKAVLPGARVGELCLIRRRDPSQLLAEVVGFTGDEALLS-PLGELHGISP 65
Query: 64 GTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVS----SIHRTPPSYEELS 119
G+ V TG+P+ I VG+A LGR+++ G P+D G + PP
Sbjct: 66 GSEVIPTGRPLSIRVGEALLGRVLDGFGRPLD--GKGELPAGEIETRPLDADPPPPMSRQ 123
Query: 120 SSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVG 179
+ L TG++ ID + +G ++G+F GAGVGK+ + + A + ++V +G
Sbjct: 124 PIDQPLPTGVRAIDGLLTCGEGQRIGIFAGAGVGKSTLLGMIARG---ASADVNVIALIG 180
Query: 180 ERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDE 239
ER RE +F IE +L + + + +V + PS RL+ A T IAE FRD+
Sbjct: 181 ERGREVREF----IEH---HLGEEGRKRSVLVVSTSDRPSLERLKAAYTATAIAEYFRDQ 233
Query: 240 GKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSI 299
GK VL +D++ R+ A E+ G P+ GY P++ + L ER + +KGSIT++
Sbjct: 234 GKRVLLMMDSLTRFARALREIGLAAGEPPARGGYPPSVFSSLPRLLERAGNGEKGSITAL 293
Query: 300 QAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKH 359
V V DD+ DP + LD +VLSR +A YPAID L S SR + +V +H
Sbjct: 294 YTVLVEGDDMNDPIADEVRSILDGHIVLSRALAERNHYPAIDVLASLSRVM-SQVVSTEH 352
Query: 360 YKIARLVQSTLQRYKELRDIISILGMDELSP-EDKLL---VARARKMQRFLSQPFH 411
+ A ++ L YKE+ +I + E P D + + ++ FL Q
Sbjct: 353 RRAAGKLRRLLATYKEVELLIRL---GEYQPGSDPETDDAIDKIDAIRAFLRQSTD 405
>gnl|CDD|213817 TIGR03496, FliI_clade1, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively [Cellular processes,
Chemotaxis and motility].
Length = 411
Score = 208 bits (531), Expect = 2e-62
Identities = 127/364 (34%), Positives = 189/364 (51%), Gaps = 22/364 (6%)
Query: 55 LGTSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPS 114
L EGLR G V P+ +PVG + LGR+I+ LG P+D KG + ++ P +
Sbjct: 51 LEDVEGLRPGARVFPLEGPLRLPVGDSLLGRVIDGLGRPLDGKGPLDAGERVPLYAPPIN 110
Query: 115 YEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSV 174
+ + E L+ G++ I+ + +G ++G+F G+GVGK+ L+ +A+ V
Sbjct: 111 PLKRAPIDEPLDVGVRAINGLLTVGRGQRMGIFAGSGVGKST----LLGMMARYTEADVV 166
Query: 175 FTG-VGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIA 233
G +GER RE +F IE L + ++ +V +E RLR A IA
Sbjct: 167 VVGLIGERGREVKEF----IE---DILGEEGLARSVVVAATADESPLMRLRAAFYATAIA 219
Query: 234 EGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQER--IAST 291
E FRD+GKDVL +D++ R+ +A E++ +G P+ GY P++ ++ L ER
Sbjct: 220 EYFRDQGKDVLLLMDSLTRFAMAQREIALAIGEPPATKGYPPSVFAKLPQLVERAGNGEE 279
Query: 292 KKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLD 351
KGSIT+ V V DD DP A LD +VLSR++A G YPAID L S SR +
Sbjct: 280 GKGSITAFYTVLVEGDDQQDPIADAARAILDGHIVLSRELAEQGHYPAIDILASISR-VM 338
Query: 352 PLIVGKKHYKIARLVQSTLQRYKELRDIISI----LGMDELSPEDKLLVARARKMQRFLS 407
P +V +H + AR + L RY+E RD+ISI G D PE +A +++ FL
Sbjct: 339 PDVVSPEHRQAARRFKQLLSRYQENRDLISIGAYQAGSD---PELDQAIALYPRIEAFLQ 395
Query: 408 QPFH 411
Q
Sbjct: 396 QGMR 399
>gnl|CDD|163293 TIGR03498, FliI_clade3, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively.
Length = 418
Score = 198 bits (505), Expect = 1e-58
Identities = 122/371 (32%), Positives = 181/371 (48%), Gaps = 23/371 (6%)
Query: 48 GIVRTIVL----GTSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNI-SN 102
G VL EG+ G V P+ + + LGR+IN LG+PID KG +
Sbjct: 42 GFNGDRVLLMPFEPLEGVGLGCAVFAREGPLAVRPHPSWLGRVINALGEPIDGKGPLPQG 101
Query: 103 KYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELI 162
+ + +PP + E L+TG++VID P +G ++G+F G+GVGK+ L+
Sbjct: 102 ERRYPLRASPPPAMSRARVGEPLDTGVRVIDTFLPLCRGQRLGIFAGSGVGKST----LL 157
Query: 163 NNIAKAHSGLSVFTG-VGERTREGNDFY-HEMIEAKVVNLDKPEKSKVSMVYGQMNEPSG 220
+ +A+ V VGER RE +F ++ E + + +V +E
Sbjct: 158 SMLARNTDADVVVIALVGERGREVREFLEDDLGEEGL--------KRSVVVVATSDESPL 209
Query: 221 NRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEE 280
R + A T IAE FRD+GKDVL +D++ R+ +A E+ G P A GY P++ E
Sbjct: 210 MRRQAAYTATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPVARGYTPSVFSE 269
Query: 281 MGYLQER--IASTKKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYP 338
+ L ER + KGSIT I V V DD +P LD +VL R IA G YP
Sbjct: 270 LPRLLERAGPGAEGKGSITGIFTVLVDGDDHNEPVADAVRGILDGHIVLDRAIAERGRYP 329
Query: 339 AIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDE-LSPEDKLLVA 397
AI+ L S SR L P + + K+ R +++ L RY+E D+I + + PE +
Sbjct: 330 AINVLASVSR-LAPRVWSPEERKLVRRLRALLARYEETEDLIRLGAYRKGSDPELDEAIR 388
Query: 398 RARKMQRFLSQ 408
K+ FL+Q
Sbjct: 389 LVPKIYEFLTQ 399
>gnl|CDD|236166 PRK08149, PRK08149, ATP synthase SpaL; Validated.
Length = 428
Score = 183 bits (467), Expect = 6e-53
Identities = 130/417 (31%), Positives = 200/417 (47%), Gaps = 38/417 (9%)
Query: 11 GSVVDVEFPHNMVPKIYNALKIENSELTLEVQQQLGDGIVRTIV--LGTSEGLRRGTIVK 68
G +++ E P + +I +S + Q +G RTI+ +G ++GL R ++K
Sbjct: 15 GPIIEAELPDVAIGEICEIRAGWHSNEVIARAQVVGFQRERTILSLIGNAQGLSRQVVLK 74
Query: 69 NTGKPIMIPVGKATLGRIINVLG-------DPIDEKGNISNKYVSSIHRTPPSYEELSSS 121
TGKP+ + VG+A LG +++ G P + I PPSY E
Sbjct: 75 PTGKPLSVWVGEALLGAVLDPTGKIVERFDAPPTVGPISEER---VIDVAPPSYAERRPI 131
Query: 122 QELLETGIKVID--LICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFT-G- 177
+E L TG++ ID L C G ++G+F AG GKT M LI HS VF G
Sbjct: 132 REPLITGVRAIDGLLTC--GVGQRMGIFASAGCGKTSLMNMLIE-----HSEADVFVIGL 184
Query: 178 VGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFR 237
+GER RE +F + + + K +VY + S +R AL T+AE FR
Sbjct: 185 IGERGREVTEFVESLRAS-------SRREKCVLVYATSDFSSVDRCNAALVATTVAEYFR 237
Query: 238 DEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSIT 297
D+GK V+ FID++ RY A +V+ G +P+ GY ++ + + L ER +T GSIT
Sbjct: 238 DQGKRVVLFIDSMTRYARALRDVALAAGELPARRGYPASVFDSLPRLLERPGATLAGSIT 297
Query: 298 SIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGK 357
+ V + +++ DP + LD + LSR +A+ G YPAID L S SR +
Sbjct: 298 AFYTVLLESEEEPDPIGDEIRSILDGHIYLSRKLAAKGHYPAIDVLKSVSRVFGQ-VTDP 356
Query: 358 KHYKIARLVQSTLQRYKELRDIISILGMDELSP----EDKLLVARARKMQRFLSQPF 410
KH ++A + L R +EL+ I LG E ++ + + ++ FL Q
Sbjct: 357 KHRQLAAAFRKLLTRLEELQLFID-LG--EYRRGENADNDRAMDKRPALEAFLKQDV 410
>gnl|CDD|181439 PRK08472, fliI, flagellum-specific ATP synthase; Validated.
Length = 434
Score = 171 bits (436), Expect = 2e-48
Identities = 114/355 (32%), Positives = 184/355 (51%), Gaps = 20/355 (5%)
Query: 59 EGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEEL 118
EG + G V + + + IPVG+ LGR+++ LG PID KG I + + I + P + +
Sbjct: 75 EGFKIGDKVFISKEGLNIPVGRNLLGRVVDPLGRPIDGKGAIDYERYAPIMKAPIAAMKR 134
Query: 119 SSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGV 178
E+ G+K ID + KG K+G+F G+GVGK+ +M +I A + V +
Sbjct: 135 GLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKS-TLMGMIVKGCLAP--IKVVALI 191
Query: 179 GERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRD 238
GER RE +F + NL ++ V +V ++ R A +++AE F++
Sbjct: 192 GERGREIPEFIEK-------NLGGDLENTV-IVVATSDDSPLMRKYGAFCAMSVAEYFKN 243
Query: 239 EGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTK-KGSIT 297
+G DVLF +D++ R+ +A E+ LG P++ GY P++ + L ER + KGSIT
Sbjct: 244 QGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSVLSLLPQLMERAGKEEGKGSIT 303
Query: 298 SIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGK 357
+ V V DD++DP + + LD +VLSR++ GIYP I+ L+S SR ++ I+
Sbjct: 304 AFFTVLVEGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINILNSASRVMND-IISP 362
Query: 358 KHYKIARLVQSTLQRYKELRDIISI----LGMDELSPEDKLLVARARKMQRFLSQ 408
+H AR + KE +I I G D E +++ M++FL Q
Sbjct: 363 EHKLAARKFKRLYSLLKENEVLIRIGAYQKGND---KELDEAISKKEFMEQFLKQ 414
>gnl|CDD|180762 PRK06936, PRK06936, type III secretion system ATPase; Provisional.
Length = 439
Score = 170 bits (432), Expect = 7e-48
Identities = 113/361 (31%), Positives = 177/361 (49%), Gaps = 18/361 (4%)
Query: 55 LGTSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPS 114
LG G+ T V TG + VG+ LGR+++ LG P D ++ P+
Sbjct: 76 LGEMYGISSNTEVSPTGTMHQVGVGEHLLGRVLDGLGQPFDGGHPPEPAAWYPVYADAPA 135
Query: 115 YEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSV 174
+ L G++VID + +G ++G+F AG GK+ + LI + A ++V
Sbjct: 136 PMSRRLIETPLSLGVRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRS---AEVDVTV 192
Query: 175 FTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAE 234
+GER RE +F IE+ +L + K +V + PS R + +IAE
Sbjct: 193 LALIGERGREVREF----IES---DLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAE 245
Query: 235 GFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKG 294
FRD+GK VL +D++ R+ A E+ G P+ GY P++ + L ER + KG
Sbjct: 246 YFRDQGKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSDKG 305
Query: 295 SITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLI 354
SIT++ V V DD+T+P T + LD ++LSR +A+ YPAID L S SR ++ I
Sbjct: 306 SITALYTVLVEGDDMTEPVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQ-I 364
Query: 355 VGKKHYKIARLVQSTLQRYKELRDIISI----LGMDELSPEDKLLVARARKMQRFLSQPF 410
V K+H A ++ L +Y+E+ ++ I G D E + R ++ FL Q
Sbjct: 365 VSKEHKTWAGRLRELLAKYEEVELLLQIGEYQKGQD---KEADQAIERIGAIRGFLRQGT 421
Query: 411 H 411
H
Sbjct: 422 H 422
>gnl|CDD|180712 PRK06820, PRK06820, type III secretion system ATPase; Validated.
Length = 440
Score = 170 bits (432), Expect = 7e-48
Identities = 117/384 (30%), Positives = 184/384 (47%), Gaps = 24/384 (6%)
Query: 31 KIENSELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVL 90
+IE + EV + + + +S+GLR G V G + VG GRI++ L
Sbjct: 55 RIEPQGMLAEVVSIEQEMALLS-PFASSDGLRCGQWVTPLGHMHQVQVGADLAGRILDGL 113
Query: 91 GDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGA 150
G PID ++ ++ + PPS +++L TGI+ ID I +G ++G+F A
Sbjct: 114 GAPIDGGPPLTGQW-RELDCPPPSPLTRQPIEQMLTTGIRAIDGILSCGEGQRIGIFAAA 172
Query: 151 GVGKTVNMMELINNIAKAHS--GLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKV 208
GVGK+ L+ + A S + V +GER RE +F + L +++
Sbjct: 173 GVGKST----LLGMLC-ADSAADVMVLALIGERGREVREFLEQ-------VLTPEARART 220
Query: 209 SMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMP 268
+V + P+ RL+ T TIAE FRD GK VL D++ RY A E+ G P
Sbjct: 221 VVVVATSDRPALERLKGLSTATTIAEYFRDRGKKVLLMADSLTRYARAAREIGLAAGEPP 280
Query: 269 SAVGYQPTLAEEMGYLQERIASTKKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLS 328
+A + P++ + L ER ++ +GSIT+ V V DD+ +P + LD +VLS
Sbjct: 281 AAGSFPPSVFANLPRLLERTGNSDRGSITAFYTVLVEGDDMNEPVADEVRSLLDGHIVLS 340
Query: 329 RDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISI----LG 384
R +A G YPAID S SR + P IV +A+ ++ L Y+E+ ++ + G
Sbjct: 341 RRLAGAGHYPAIDIAASVSRIM-PQIVSAGQLAMAQKLRRMLACYQEIELLVRVGEYQAG 399
Query: 385 MDELSPEDKLLVARARKMQRFLSQ 408
D + E + R + FL Q
Sbjct: 400 EDLQADE---ALQRYPAICAFLQQ 420
>gnl|CDD|181092 PRK07721, fliI, flagellum-specific ATP synthase; Validated.
Length = 438
Score = 169 bits (431), Expect = 8e-48
Identities = 110/323 (34%), Positives = 175/323 (54%), Gaps = 19/323 (5%)
Query: 64 GTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVS--SIHRTPPSYEELSSS 121
G +V+ TGKP+ + VG +G++++ LG+P+D G+ K ++ S + PP+ +
Sbjct: 81 GCLVEATGKPLEVKVGSGLIGQVLDALGEPLD--GSALPKGLAPVSTDQDPPNPLKRPPI 138
Query: 122 QELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSG-LSVFTGVGE 180
+E +E G++ ID + KG +VG+F G+GVGK+ L+ IA+ S L+V +GE
Sbjct: 139 REPMEVGVRAIDSLLTVGKGQRVGIFAGSGVGKST----LMGMIARNTSADLNVIALIGE 194
Query: 181 RTREGNDFYHEMIEAKVVNLDKPEKSKVSM-VYGQMNEPSGNRLRVALTGLTIAEGFRDE 239
R RE +F IE + PE K S+ V ++P+ R++ A T IAE FRD+
Sbjct: 195 RGREVREF----IERDL----GPEGLKRSIVVVATSDQPALMRIKGAYTATAIAEYFRDQ 246
Query: 240 GKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSI 299
G +V+ +D++ R +A E+ +G P+ GY P++ + L ER + GSIT+
Sbjct: 247 GLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAF 306
Query: 300 QAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKH 359
V V DD+ +P T LD VL R +A+ G YPAI+ L S SR + IV +H
Sbjct: 307 YTVLVDGDDMNEPIADTVRGILDGHFVLDRQLANKGQYPAINVLKSVSRVM-NHIVSPEH 365
Query: 360 YKIARLVQSTLQRYKELRDIISI 382
+ A + L Y+ D+I+I
Sbjct: 366 KEAANRFRELLSTYQNSEDLINI 388
>gnl|CDD|169656 PRK09099, PRK09099, type III secretion system ATPase; Provisional.
Length = 441
Score = 164 bits (418), Expect = 8e-46
Identities = 125/423 (29%), Positives = 210/423 (49%), Gaps = 44/423 (10%)
Query: 4 GKIIQCIGSVVDVEFPHNMVPKIYNALKIENSELTLEVQQQLGDGIVRTIVLGTS----- 58
GK+++ IG+++ V + L + EL E++Q+ G + R V+G S
Sbjct: 26 GKVVEVIGTLLRV-----------SGLDVTLGELC-ELRQRDGTLLQRAEVVGFSRDVAL 73
Query: 59 -------EGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRT 111
GL RGT V G+P+ +PVG A LGR+I+ LG+PID G + + +
Sbjct: 74 LSPFGELGGLSRGTRVIGLGRPLSVPVGPALLGRVIDGLGEPIDGGGPLDCDELVPVIAA 133
Query: 112 PPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAK-AHS 170
PP + L TG++++D + +G ++G+F AGVGK+ L+ A+
Sbjct: 134 PPDPMSRRMVEAPLPTGVRIVDGLMTLGEGQRMGIFAPAGVGKST----LMGMFARGTQC 189
Query: 171 GLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGL 230
++V +GER RE +F E+I L + ++ +V + S R + A
Sbjct: 190 DVNVIALIGERGREVREFI-ELI------LGEDGMARSVVVCATSDRSSIERAKAAYVAT 242
Query: 231 TIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAS 290
IAE FRD G VL +D++ R+ A E+ G P+ G+ P++ E+ L ER
Sbjct: 243 AIAEYFRDRGLRVLLMMDSLTRFARAQREIGLAAGEPPARRGFPPSVFAELPRLLERAGM 302
Query: 291 TKKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQL 350
+ GSIT++ V + +DP LD ++LSR+IA+ YPAID L S SR +
Sbjct: 303 GETGSITALYTVLAEDESGSDPIAEEVRGILDGHMILSREIAARNQYPAIDVLGSLSRVM 362
Query: 351 DPLIVGKKHYKIARLVQSTLQRYKELRDIISI----LGMDELSPEDKLLVARARKMQRFL 406
P +V ++H + A ++ L +++E+ ++ + G D ++ E +A+ ++ FL
Sbjct: 363 -PQVVPREHVQAAGRLRQLLAKHREVETLLQVGEYRAGSDPVADE---AIAKIDAIRDFL 418
Query: 407 SQP 409
SQ
Sbjct: 419 SQR 421
>gnl|CDD|180526 PRK06315, PRK06315, type III secretion system ATPase; Provisional.
Length = 442
Score = 162 bits (412), Expect = 5e-45
Identities = 123/365 (33%), Positives = 180/365 (49%), Gaps = 22/365 (6%)
Query: 55 LGTSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDE--KGNISN-KYVSSIHRT 111
LG G+ + V TG P+ I G LGR++N LG+PID KG + N I R
Sbjct: 75 LGELTGVSPSSEVIPTGLPLHIRAGNGLLGRVLNGLGEPIDTETKGPLENVDETYPIFRA 134
Query: 112 PPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSG 171
PP + + +L TG++ ID + ++G ++G+F GAGVGK+ + + N +A
Sbjct: 135 PPDPLHRAKLRTILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEAD-- 192
Query: 172 LSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVS-MVYGQMNEPSGNRLRVALTGL 230
++V +GER RE +F IE + E K S +V ++ S RL A G
Sbjct: 193 VNVIALIGERGREVREF----IEGDL----GEEGMKRSVIVVSTSDQSSQLRLNAAYVGT 244
Query: 231 TIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAS 290
IAE FRD+GK V+ +D++ R+ A EV G P+ GY P++ + L ER +
Sbjct: 245 AIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERSGA 304
Query: 291 TKKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQL 350
+ KG+IT+ V V DD+ +P + LD +VLS +A YPAID L S SR L
Sbjct: 305 SDKGTITAFYTVLVAGDDMNEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLL 364
Query: 351 DPLIVGKKHYKIARLVQSTLQRYKELRDIISI----LGMDELSPEDKLLVARARKMQRFL 406
IV ++ +I + L +YK +I I G D E + K+ RFL
Sbjct: 365 TA-IVPEEQRRIIGKAREVLAKYKANEMLIRIGEYRRGSDR---EVDFAIDHIDKLNRFL 420
Query: 407 SQPFH 411
Q H
Sbjct: 421 KQDIH 425
>gnl|CDD|168181 PRK05688, fliI, flagellum-specific ATP synthase; Validated.
Length = 451
Score = 162 bits (412), Expect = 6e-45
Identities = 117/374 (31%), Positives = 183/374 (48%), Gaps = 48/374 (12%)
Query: 55 LGTSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKY--------VS 106
+G+ G+ G V +P+G + LGR+++ G +D KG + + ++
Sbjct: 82 VGSVAGIAPGARVVPLADTGRLPMGMSMLGRVLDGAGRALDGKGPMKAEDWVPMDGPTIN 141
Query: 107 SIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTV--NMMELINN 164
++R P S E L+ GI+ I+ + +G ++GLF G GVGK+V MM
Sbjct: 142 PLNRHPIS--------EPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTE 193
Query: 165 IAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGN--- 221
GL +GER RE +F ++ E K S+V + P+ +
Sbjct: 194 ADIIVVGL-----IGERGREVKEFIEHIL--------GEEGLKRSVV---VASPADDAPL 237
Query: 222 -RLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEE 280
RLR A+ IAE FRD+GK+VL +D++ R+ A E++ +G P+ GY P++ +
Sbjct: 238 MRLRAAMYCTRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPATKGYPPSVFAK 297
Query: 281 MGYLQERIASTKK--GSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYP 338
+ L ER + + GSIT+ V DD DP + LD +VLSR +A G YP
Sbjct: 298 LPKLVERAGNAEPGGGSITAFYTVLSEGDDQQDPIADSARGVLDGHIVLSRRLAEEGHYP 357
Query: 339 AIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISI----LGMDELSPEDKL 394
AID S SR + P +V +H + A+ + RY++ RD+IS+ G D PE L
Sbjct: 358 AIDIEASISRVM-PQVVDPEHLRRAQRFKQLWSRYQQSRDLISVGAYVAGGD---PETDL 413
Query: 395 LVARARKMQRFLSQ 408
+AR + +FL Q
Sbjct: 414 AIARFPHLVQFLRQ 427
>gnl|CDD|181599 PRK08972, fliI, flagellum-specific ATP synthase; Validated.
Length = 444
Score = 161 bits (408), Expect = 2e-44
Identities = 107/314 (34%), Positives = 167/314 (53%), Gaps = 23/314 (7%)
Query: 76 IPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLI 135
+PVG + LGR+I+ +G+P+D G I +S H P + E L+ G++ I+ +
Sbjct: 97 LPVGMSLLGRVIDGVGNPLDGLGPIYTDQRASRHSPPINPLSRRPITEPLDVGVRAINAM 156
Query: 136 CPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTG-VGERTREGNDFYHEMI- 193
KG ++GLF G+GVGK+V L+ + + + + G VGER RE +F E++
Sbjct: 157 LTVGKGQRMGLFAGSGVGKSV----LLGMMTRGTTADVIVVGLVGERGREVKEFIEEILG 212
Query: 194 ---EAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNI 250
A+ V + P + M RL+ T TIAE FRD+G +VL +D++
Sbjct: 213 EEGRARSVVVAAPADTSPLM-----------RLKGCETATTIAEYFRDQGLNVLLLMDSL 261
Query: 251 YRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERI--ASTKKGSITSIQAVYVPADD 308
RY A E++ +G P+ GY P++ ++ L ER +GSIT+ V DD
Sbjct: 262 TRYAQAQREIALAVGEPPATKGYPPSVFAKLPALVERAGNGGPGQGSITAFYTVLTEGDD 321
Query: 309 LTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQS 368
L DP + A LD +VLSR++A G YPAID S SR + P+++ ++H + R V+
Sbjct: 322 LQDPIADASRAILDGHIVLSRELADSGHYPAIDIEASISRVM-PMVISEEHLEAMRRVKQ 380
Query: 369 TLQRYKELRDIISI 382
Y++ RD+ISI
Sbjct: 381 VYSLYQQNRDLISI 394
>gnl|CDD|235666 PRK06002, fliI, flagellum-specific ATP synthase; Validated.
Length = 450
Score = 161 bits (409), Expect = 2e-44
Identities = 105/300 (35%), Positives = 152/300 (50%), Gaps = 17/300 (5%)
Query: 84 GRIINVLGDPIDEKGNISNKYVS-SIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGG 142
GR+IN LG+PID G ++ SI T P + + L TG++VID+ P G
Sbjct: 107 GRVINALGEPIDGLGPLAPGTRPMSIDATAPPAMTRARVETGLRTGVRVIDIFTPLCAGQ 166
Query: 143 KVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTG-VGERTREGNDFYHEMIEAKVVNLD 201
++G+F G+GVGK+ L+ +A+A + +V VGER RE +F + +
Sbjct: 167 RIGIFAGSGVGKST----LLAMLARADAFDTVVIALVGERGREVREFLEDTLADN----- 217
Query: 202 KPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVS 261
K V +E R LT IAE FRD G++VL +D++ R+ A EV+
Sbjct: 218 ---LKKAVAVVATSDESPMMRRLAPLTATAIAEYFRDRGENVLLIVDSVTRFAHAAREVA 274
Query: 262 ALLGRMPSAVGYQPTLAEEMGYLQERI--ASTKKGSITSIQAVYVPADDLTDPSPATTFA 319
G P A GY P++ E+ L ER + GSIT I +V V DD DP +
Sbjct: 275 LAAGEPPVARGYPPSVFSELPRLLERAGPGAEGGGSITGIFSVLVDGDDHNDPVADSIRG 334
Query: 320 HLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDI 379
LD +VL R IA G YPA+DPL S SR ++ ++RL +S + R++E RD+
Sbjct: 335 TLDGHIVLDRAIAEQGRYPAVDPLASISRLARHAWTPEQRKLVSRL-KSMIARFEETRDL 393
>gnl|CDD|136438 PRK07594, PRK07594, type III secretion system ATPase SsaN;
Validated.
Length = 433
Score = 156 bits (396), Expect = 6e-43
Identities = 102/327 (31%), Positives = 162/327 (49%), Gaps = 12/327 (3%)
Query: 56 GTSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSY 115
++ GL G V + +PVG+A LGR+I+ G P+D + + PP+
Sbjct: 71 TSTIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPDVCWKDYDAMPPPAM 130
Query: 116 EELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVF 175
+Q L+ TGI+ ID + +G +VG+F GVGK+ ++ ++ N A S +V
Sbjct: 131 VRQPITQPLM-TGIRAIDSVATCGEGQRVGIFSAPGVGKS-TLLAMLCNAPDADS--NVL 186
Query: 176 TGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEG 235
+GER RE +F L + + + +V + P+ R+R TIAE
Sbjct: 187 VLIGERGREVREFIDF-------TLSEETRKRCVIVVATSDRPALERVRALFVATTIAEF 239
Query: 236 FRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGS 295
FRD GK V+ D++ RY A E++ G + Y P + + L ER +KGS
Sbjct: 240 FRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGS 299
Query: 296 ITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIV 355
IT+ V V DD+ +P + LD +VLSR +A G YPAID L + SR P++
Sbjct: 300 ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVF-PVVT 358
Query: 356 GKKHYKIARLVQSTLQRYKELRDIISI 382
+H ++A +++ L Y+E+ +I I
Sbjct: 359 SHEHRQLAAILRRCLALYQEVELLIRI 385
>gnl|CDD|180875 PRK07196, fliI, flagellum-specific ATP synthase; Validated.
Length = 434
Score = 155 bits (394), Expect = 1e-42
Identities = 101/334 (30%), Positives = 157/334 (47%), Gaps = 15/334 (4%)
Query: 78 VGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICP 137
+G + LGR+IN LG+P+D KG + + + L+ G+ I+ +
Sbjct: 92 IGDSWLGRVINGLGEPLDGKGQLGGSTPLQQQLPQIHPLQRRAVDTPLDVGVNAINGLLT 151
Query: 138 FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTG-VGERTREGNDFYHEMIEAK 196
KG +VGL G+GVGK+V L+ I + V G +GER RE +F ++A
Sbjct: 152 IGKGQRVGLMAGSGVGKSV----LLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAA 207
Query: 197 VVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLA 256
+ +K +V +E R++ IA +RD+G DVL +D++ RY +A
Sbjct: 208 GM-------AKSVVVAAPADESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLTRYAMA 260
Query: 257 GTEVSALLGRMPSAVGYQPTLAEEMGYLQERIA-STKKGSITSIQAVYVPADDLTDPSPA 315
E++ LG P+ GY P+ + L E S+ G++T+I V DD DP
Sbjct: 261 QREIALSLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQDPIVD 320
Query: 316 TTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKE 375
A LD +VLSR +A G YPAID S SR + +I G + K A L++ Y
Sbjct: 321 CARAVLDGHIVLSRKLAEAGHYPAIDISQSISRCMSQVI-GSQQAKAASLLKQCYADYMA 379
Query: 376 LRDIISILG-MDELSPEDKLLVARARKMQRFLSQ 408
++ +I + G + P V + +FL Q
Sbjct: 380 IKPLIPLGGYVAGADPMADQAVHYYPAITQFLRQ 413
>gnl|CDD|180696 PRK06793, fliI, flagellum-specific ATP synthase; Validated.
Length = 432
Score = 152 bits (386), Expect = 1e-41
Identities = 111/322 (34%), Positives = 167/322 (51%), Gaps = 20/322 (6%)
Query: 58 SEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEK-GNISNKYVSSIHRTPPSYE 116
+E + G V + ++IP G LG++++ G+ ++E+ NI + + PP +
Sbjct: 73 TEKVCYGDSVTLIAEDVVIPRGNHLLGKVLSANGEVLNEEAENIPLQKIKL--DAPPIHA 130
Query: 117 -ELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAK-AHSGLSV 174
E ++ ETGIK ID + G K+G+F G+GVGK+ L+ IAK A + ++V
Sbjct: 131 FEREEITDVFETGIKSIDSMLTIGIGQKIGIFAGSGVGKST----LLGMIAKNAKADINV 186
Query: 175 FTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAE 234
+ VGER RE DF + L + K +V +E +LR A +IAE
Sbjct: 187 ISLVGERGREVKDFIRK-------ELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAE 239
Query: 235 GFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEE-MGYLQERIASTKK 293
FRD+G +VL +D++ R+ A V + +P +G + L E M L ER T+K
Sbjct: 240 YFRDQGNNVLLMMDSVTRFADARRSVDIAVKELP--IGGKTLLMESYMKKLLERSGKTQK 297
Query: 294 GSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPL 353
GSIT I V V DDL P P LD +VL R++A+L YPAI LDS SR ++
Sbjct: 298 GSITGIYTVLVDGDDLNGPVPDLARGILDGHIVLKRELATLSHYPAISVLDSVSRIMEE- 356
Query: 354 IVGKKHYKIARLVQSTLQRYKE 375
IV H+++A ++ L YKE
Sbjct: 357 IVSPNHWQLANEMRKILSIYKE 378
>gnl|CDD|236351 PRK08927, fliI, flagellum-specific ATP synthase; Validated.
Length = 442
Score = 152 bits (386), Expect = 3e-41
Identities = 109/332 (32%), Positives = 163/332 (49%), Gaps = 27/332 (8%)
Query: 56 GTSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVS-SIHRTPPS 114
G EG+RRG + +A LGR++N LG+PID KG + V + PP
Sbjct: 72 GPLEGVRRGCRAVIANAAAAVRPSRAWLGRVVNALGEPIDGKGPLPQGPVPYPLRAPPPP 131
Query: 115 YEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSV 174
+ E L+ G++ ++ +G ++G+F G+GVGK+V + L N A + +SV
Sbjct: 132 AHSRARVGEPLDLGVRALNTFLTCCRGQRMGIFAGSGVGKSVLLSMLARN---ADADVSV 188
Query: 175 FTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVY-GQMNEPSGNRLRVALTGLTIA 233
+GER RE +F + + PE S+V +EP+ R + A L IA
Sbjct: 189 IGLIGERGREVQEFLQDDL--------GPEGLARSVVVVATSDEPALMRRQAAYLTLAIA 240
Query: 234 EGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERI--AST 291
E FRD+GKDVL +D++ R+ +A E+ G P+ GY PT+ E+ L ER
Sbjct: 241 EYFRDQGKDVLCLMDSVTRFAMAQREIGLSAGEPPTTKGYTPTVFAELPRLLERAGPGPI 300
Query: 292 KKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQL- 350
+G+IT + V V DD +P LD +V+ R IA G YPAI+ L S SR +
Sbjct: 301 GEGTITGLFTVLVDGDDHNEPVADAVRGILDGHIVMERAIAERGRYPAINVLKSVSRTMP 360
Query: 351 ---DP---LIVGKKHYKIARLVQSTLQRYKEL 376
DP +V + AR + +T +EL
Sbjct: 361 GCNDPEENPLVRR-----ARQLMATYADMEEL 387
>gnl|CDD|181182 PRK07960, fliI, flagellum-specific ATP synthase; Validated.
Length = 455
Score = 138 bits (350), Expect = 4e-36
Identities = 100/311 (32%), Positives = 161/311 (51%), Gaps = 17/311 (5%)
Query: 76 IPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLI 135
+P+G A LGR+++ G P+D ++ P + + + + +L+TG++ I+ +
Sbjct: 110 LPLGPALLGRVLDGSGKPLDGLPAPDTGETGALITPPFNPLQRTPIEHVLDTGVRAINAL 169
Query: 136 CPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTG-VGERTREGNDFYHEMIE 194
+G ++GLF G+GVGK+V L+ +A+ + G +GER RE DF IE
Sbjct: 170 LTVGRGQRMGLFAGSGVGKSV----LLGMMARYTQADVIVVGLIGERGREVKDF----IE 221
Query: 195 AKVVNLDKPEKSKVSMVYGQMNEPSGN-RLRVALTGLTIAEGFRDEGKDVLFFIDNIYRY 253
N+ E S+V + S R++ A IAE FRD G+ VL +D++ RY
Sbjct: 222 ----NILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRY 277
Query: 254 TLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIAS--TKKGSITSIQAVYVPADDLTD 311
+A E++ +G P+ GY P++ ++ L ER + + GSIT+ V DD D
Sbjct: 278 AMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFYTVLTEGDDQQD 337
Query: 312 PSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQ 371
P + A LD +VLSR +A G YPAID S SR + LI ++HY R + L
Sbjct: 338 PIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALI-DEQHYARVRQFKQLLS 396
Query: 372 RYKELRDIISI 382
++ RD++S+
Sbjct: 397 SFQRNRDLVSV 407
>gnl|CDD|102061 PRK05922, PRK05922, type III secretion system ATPase; Validated.
Length = 434
Score = 128 bits (322), Expect = 1e-32
Identities = 106/356 (29%), Positives = 167/356 (46%), Gaps = 30/356 (8%)
Query: 64 GTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQE 123
G V +P + + LGR+++ G+P+D K + ++ + +PPS QE
Sbjct: 80 GAEVLPLRRPPSLHLSDHLLGRVLDGFGNPLDGKEQLPKTHLKPLFSSPPSPMSRQPIQE 139
Query: 124 LLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAK-AHSGLSVFTGVGERT 182
+ TGIK ID KG ++G+F G GK+ L++ IAK + S ++V +GER
Sbjct: 140 IFPTGIKAIDAFLTLGKGQRIGVFSEPGSGKS----SLLSTIAKGSKSTINVIALIGERG 195
Query: 183 REGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKD 242
RE ++ + E + ++ +E + ++ +TIAE FRD+G
Sbjct: 196 REVREYIEQHKEGL-------AAQRTIIIASPAHETAPTKVIAGRAAMTIAEYFRDQGHR 248
Query: 243 VLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQAV 302
VLF +D++ R+ A EV+ G SA Y ++ + ER + KGSIT++ A+
Sbjct: 249 VLFIMDSLSRWIAALQEVALARGETLSAHHYAASVFHHVSEFTERAGNNDKGSITALYAI 308
Query: 303 -YVP--ADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKH 359
+ P D TD + LD L+ +L P ID L S SR L + H
Sbjct: 309 LHYPNHPDIFTDYLKSL----LDGHFFLTPQGKALA-SPPIDILTSLSRSARQLAL-PHH 362
Query: 360 YKIARLVQSTLQRYKELRDIISI----LGMD-ELSPEDKLLVARARKMQRFLSQPF 410
Y A ++S L+ Y E DII + G D L KLL + +++FLSQP
Sbjct: 363 YAAAEELRSLLKAYHEALDIIQLGAYVPGQDAHLDRAVKLLPS----IKQFLSQPL 414
>gnl|CDD|215848 pfam00306, ATP-synt_ab_C, ATP synthase alpha/beta chain, C terminal
domain.
Length = 110
Score = 119 bits (300), Expect = 1e-32
Identities = 41/113 (36%), Positives = 69/113 (61%), Gaps = 8/113 (7%)
Query: 360 YKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVARARKMQRFLSQPFHVAEVFTGK 419
++A ++ L +Y+EL+ I+ ++G D LS EDKL + RAR+++ FL Q + E
Sbjct: 1 KQVAGQLKLELAQYRELQAIVQLVGEDALSEEDKLTLERARRIEEFLKQNQYSPEPV--- 57
Query: 420 SGKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEA-----IKKSKKLMK 467
+YV +++T++ F+ + G+ D++PE A Y +GTID A +K KKL K
Sbjct: 58 EKQYVPVEETIDLFYALLRGKFDDLPEDALYRIGTIDLAKYKDLEEKFKKLKK 110
>gnl|CDD|224078 COG1156, NtpB, Archaeal/vacuolar-type H+-ATPase subunit B [Energy
production and conversion].
Length = 463
Score = 124 bits (313), Expect = 5e-31
Identities = 114/426 (26%), Positives = 186/426 (43%), Gaps = 47/426 (11%)
Query: 45 LGDGIVRTIVLGTSEGL-RRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNK 103
+ V + GL +GT V+ TG+ + IPV + LGRI N G PID I +
Sbjct: 49 VRGDKAVVQVFEGTSGLDTKGTTVRFTGETLKIPVSEDLLGRIFNGSGKPIDGGPEIVPE 108
Query: 104 YVSSIHRTP--PSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMEL 161
I+ P P E ++TGI ID + +G K+ +F G+G + EL
Sbjct: 109 DRLDINGAPINPYARIYPE--EFIQTGISAIDGMNTLVRGQKLPIFSGSG----LPHNEL 162
Query: 162 INNIAKAHSGLS-------VFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQ 214
IA+ + VF +G E F E E + + +
Sbjct: 163 AAQIARQATVDGEEEEFAVVFAAMGITHEEALFFMDEFEETGAL-------DRAVLFLNL 215
Query: 215 MNEPSGNRLRVALTGLTIAEGFR-DEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGY 273
++P+ R+ LT+AE ++ VL + ++ Y A E+SA +P GY
Sbjct: 216 ADDPAVERIITPRMALTVAEYLAFEKDMHVLVILTDMTNYCEALREISAAREEVPGRRGY 275
Query: 274 QPTLAEEMGYLQER--IASTKKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDI 331
+ ++ + ER +KGSIT I + +P DD+T P P T + +VLSRD+
Sbjct: 276 PGYMYTDLATIYERAGRIRGRKGSITQIPILTMPGDDITHPIPDLTGYITEGQIVLSRDL 335
Query: 332 ASLGIYPAIDPLDSTSRQLDPLIVGKK-----HYKIARLVQSTLQRYKELRDIISILGMD 386
GIYP I+ L S SR + I G+ H ++ + + ++LR++++++G +
Sbjct: 336 HRKGIYPPINVLPSLSRLMKDGI-GEGKTREDHGDVSNQLYAAYAEGRDLRELVAVVGEE 394
Query: 387 ELSPEDKLLVARARKM-QRFLSQPFHVAEVFTGKSGKYVSLKDTLN-GFHLIS---SGEL 441
LS D+ + A QRF+ Q + S+++TL+ G+ L+S EL
Sbjct: 395 ALSERDRKYLKFADLFEQRFIKQGRYEN----------RSIEETLDLGWELLSILPESEL 444
Query: 442 DNIPEQ 447
I
Sbjct: 445 TRIKPD 450
>gnl|CDD|233211 TIGR00962, atpA, proton translocating ATP synthase, F1 alpha
subunit. The sequences of ATP synthase F1 alpha and
beta subunits are related and both contain a
nucleotide-binding site for ATP and ADP. They have a
common amino terminal domain but vary at the C-terminus.
The beta chain has catalytic activity, while the alpha
chain is a regulatory subunit. The alpha-subunit
contains a highly conserved adenine-specific
noncatalytic nucleotide-binding domain. The conserved
amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton
translocating ATP synthase F1, alpha subunit is
homologous to proton translocating ATP synthase
archaeal/vacuolar(V1), B subunit [Energy metabolism,
ATP-proton motive force interconversion].
Length = 501
Score = 124 bits (312), Expect = 1e-30
Identities = 111/420 (26%), Positives = 186/420 (44%), Gaps = 44/420 (10%)
Query: 10 IGSVVDVEFPHNMVPKIY---NALKIENSEL---TLEVQQQLGDGIVRTIVLGTSEGLRR 63
+G+VV V + + ++Y N + E E + L + V +++G +R
Sbjct: 27 VGTVVSVG---DGIARVYGLENVMSGELIEFEGGVQGIALNLEEDSVGAVIMGDYSDIRE 83
Query: 64 GTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQE 123
G+ VK TG+ + +PVG LGR++N LG+PID KG I + S + + P E S E
Sbjct: 84 GSTVKRTGRILEVPVGDGLLGRVVNALGEPIDGKGPIDSDEFSPVEKIAPGVIERKSVHE 143
Query: 124 LLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTR 183
L+TGIK ID + P +G + + G GKT ++ I N K ++ +G++
Sbjct: 144 PLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAVAIDTIIN-QKDSDVYCIYVAIGQK-- 200
Query: 184 EGNDFYHEMIEAKVVNLDKPEKSKVSMVY-----GQMNEPSGNRLRVALTGLTIAEGFRD 238
+ V + + + +M Y ++ + + TG T+ E FRD
Sbjct: 201 ----------ASTVAQVVRKLEEHGAMAYTIVVAATASDSASLQYLAPYTGCTMGEYFRD 250
Query: 239 EGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTK----KG 294
GK L D++ + +A ++S LL R P + + L ER A G
Sbjct: 251 NGKHALIIYDDLSKQAVAYRQISLLLRRPPGREAFPGDVFYLHSRLLERAAKLNDEKGGG 310
Query: 295 SITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLI 354
S+T++ + A D++ P + D + L D+ + GI PAI+ S SR
Sbjct: 311 SLTALPIIETQAGDVSAYIPTNVISITDGQIFLESDLFNSGIRPAINVGLSVSR------ 364
Query: 355 VG-----KKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVARARKMQRFLSQP 409
VG K ++A ++ L +Y+EL + S D L K + R +++ L QP
Sbjct: 365 VGGAAQIKAMKQVAGSLRLELAQYREL-EAFSQFASD-LDEATKKQLERGQRVVELLKQP 422
>gnl|CDD|235251 PRK04196, PRK04196, V-type ATP synthase subunit B; Provisional.
Length = 460
Score = 123 bits (311), Expect = 1e-30
Identities = 125/436 (28%), Positives = 196/436 (44%), Gaps = 67/436 (15%)
Query: 45 LGDGIVRTIVLGTSEGL-RRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNI-SN 102
+ + V + GL + T V+ TG+P+ +PV + LGRI + LG PID I
Sbjct: 46 VSEDKAVVQVFEGTTGLDLKDTKVRFTGEPLKLPVSEDMLGRIFDGLGRPIDGGPEIIPE 105
Query: 103 KYVSSIHRTP--PSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMME 160
K + I+ P P E +E ++TGI ID + +G K+ +F G+G+ E
Sbjct: 106 KRLD-INGAPINPVARE--YPEEFIQTGISAIDGLNTLVRGQKLPIFSGSGLPHN----E 158
Query: 161 LINNIAKAHSGLS-------VFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYG 213
L IA+ L VF +G E N F + E + + +
Sbjct: 159 LAAQIARQAKVLGEEENFAVVFAAMGITFEEANFFMEDFEETGALE-------RSVVFLN 211
Query: 214 QMNEPSGNRLRVALTGLTIAE--GFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAV 271
++P+ R+ LT AE F ++G VL + ++ Y A E+SA +P
Sbjct: 212 LADDPAIERILTPRMALTAAEYLAF-EKGMHVLVILTDMTNYCEALREISAAREEVPGRR 270
Query: 272 GYQPTLAEEMGYLQERIAST---------KKGSITSIQAVYVPADDLTDPSPATTFAHLD 322
GY P GY+ +A+ KKGSIT I + +P DD+T P P T +
Sbjct: 271 GY-P------GYMYTDLATIYERAGRIKGKKGSITQIPILTMPDDDITHPIPDLTGYITE 323
Query: 323 STVVLSRDIASLGIYPAIDPLDSTSRQLDPLI-VGKK---HYKIARLVQSTLQRYKELRD 378
+VLSR++ GIYP ID L S SR + I GK H +A + + R K+LR+
Sbjct: 324 GQIVLSRELHRKGIYPPIDVLPSLSRLMKDGIGEGKTREDHKDVANQLYAAYARGKDLRE 383
Query: 379 IISILGMDELSPEDKLLVARARKM-QRFLSQPFHVAEVFTGKSGKYV--SLKDTLN-GFH 434
+ +I+G + LS D+ + A + F++Q G S+++TL+ G+
Sbjct: 384 LAAIVGEEALSERDRKYLKFADAFEREFVNQ------------GFDENRSIEETLDLGWE 431
Query: 435 LIS---SGELDNIPEQ 447
L+S EL I ++
Sbjct: 432 LLSILPESELKRIKDE 447
>gnl|CDD|200071 TIGR01041, ATP_syn_B_arch, ATP synthase archaeal, B subunit.
Archaeal ATP synthase shares extensive sequence
similarity with eukaryotic and prokaryotic V-type
(H+)-ATPases [Energy metabolism, ATP-proton motive force
interconversion].
Length = 458
Score = 121 bits (304), Expect = 7e-30
Identities = 109/407 (26%), Positives = 182/407 (44%), Gaps = 56/407 (13%)
Query: 41 VQQQLGDGIVRT-IVLGTSEGL-------------RRGTIVKNTGKPIMIPVGKATLGRI 86
V+ + DG R VL +SEG+ GT V+ TG+ + +PV + LGRI
Sbjct: 27 VEIETPDGEKRRGQVLDSSEGIAVVQVFEGTTGLDPTGTKVRFTGETLKLPVSEDMLGRI 86
Query: 87 INVLGDPID--------EKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPF 138
+N G+PID E+ +I+ ++ R P +E ++TGI ID +
Sbjct: 87 LNGSGEPIDGGPEIVPDERRDINGAPINPYAREYP--------EEFIQTGISAIDGMNTL 138
Query: 139 SKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLS-------VFTGVGERTREGNDFYHE 191
+G K+ +F G+G+ EL IA+ + VF +G E N F +
Sbjct: 139 VRGQKLPIFSGSGLPHN----ELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKD 194
Query: 192 MIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFR-DEGKDVLFFIDNI 250
E + + + ++P+ R+ LT AE ++ VL + ++
Sbjct: 195 FEETGALE-------RAVVFLNLADDPAVERIVTPRMALTAAEYLAFEKDMHVLVILTDM 247
Query: 251 YRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQER--IASTKKGSITSIQAVYVPADD 308
Y A E+SA +P GY + ++ + ER KKGSIT + + +P DD
Sbjct: 248 TNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRVKGKKGSITQMPILTMPGDD 307
Query: 309 LTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKK----HYKIAR 364
+T P P T + +VLSR++ GIYP I+ L S SR + I K H ++
Sbjct: 308 ITHPIPDLTGYITEGQIVLSRELHRKGIYPPINVLPSLSRLMKDGIGEGKTREDHKDVSD 367
Query: 365 LVQSTLQRYKELRDIISILGMDELSPEDKLLVARARKM-QRFLSQPF 410
+ + ++LR +++I+G + LS D+ + A ++F+ Q F
Sbjct: 368 QLYAAYAEGRDLRGLVAIVGEEALSERDRKYLKFADLFERKFVRQGF 414
>gnl|CDD|130115 TIGR01043, ATP_syn_A_arch, ATP synthase archaeal, A subunit.
Archaeal ATP synthase shares extensive sequence
similarity with eukaryotic and prokaryotic V-type
(H+)-ATPases [Energy metabolism, ATP-proton motive force
interconversion].
Length = 578
Score = 119 bits (301), Expect = 4e-29
Identities = 102/340 (30%), Positives = 149/340 (43%), Gaps = 32/340 (9%)
Query: 110 RTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAK-A 168
R P Y+E + L TG +++D P +KGG + G G GKTV +L AK +
Sbjct: 191 RIPRPYKEKLPPEVPLITGQRILDTFFPIAKGGTAAIPGPFGSGKTVTQHQL----AKWS 246
Query: 169 HSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALT 228
+ + V+ G GER E D E E K KP + ++ N P R T
Sbjct: 247 DADIVVYIGCGERGNEMTDVLEEFPELKDPKTGKPLMERTVLIANTSNMPVAAREASIYT 306
Query: 229 GLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQER- 287
G+TIAE FRD G DV D+ R+ A E+S L MP GY LA + ER
Sbjct: 307 GITIAEYFRDMGYDVALMADSTSRWAEAMREISGRLEEMPGEEGYPAYLASRLAEFYERA 366
Query: 288 -----IAST-KKGSITSIQAVYVPADDLTDPSPATT------FAHLDSTVVLSRDIASLG 335
+ + GS+T I AV P D ++P T F LD+ + R
Sbjct: 367 GRVKTLGGEERVGSVTVIGAVSPPGGDFSEPVTQNTLRIVKVFWALDADLAQRRH----- 421
Query: 336 IYPAIDPLDSTSRQLDPLI------VGKKHYKIARLVQSTLQRYKELRDIISILGMDELS 389
+PAI+ L S S +D + V ++ LQ+ EL++I+ ++G D L
Sbjct: 422 -FPAINWLQSYSLYVDLVQDWWHENVDPDWREMRDEAMDLLQKESELQEIVQLVGPDALP 480
Query: 390 PEDKLLVARARKMQR-FLSQ-PFHVAEVFTGKSGKYVSLK 427
KL++ AR ++ FL Q F + + +Y L+
Sbjct: 481 ERQKLILEVARMIREAFLQQNAFDPVDTYCPPQKQYRILR 520
Score = 32.4 bits (74), Expect = 0.54
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 3 DGKIIQCIGSVVDVEFPHNM-VPKIYNALKIENSELTLEVQQQLGDGIVRTI--VLGTSE 59
G+II+ G +V + M ++Y +K+ L E+ + GD + V +
Sbjct: 1 KGRIIRVSGPLVVAD---GMKGAQMYEVVKVGEEGLIGEIIRIEGD---KAFIQVYEETS 54
Query: 60 GLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPID 95
G++ G V TG P+ + +G LG I + + P+D
Sbjct: 55 GIKPGEPVVGTGAPLSVELGPGLLGSIYDGVQRPLD 90
>gnl|CDD|183987 PRK13343, PRK13343, F0F1 ATP synthase subunit alpha; Provisional.
Length = 502
Score = 111 bits (281), Expect = 1e-26
Identities = 99/370 (26%), Positives = 167/370 (45%), Gaps = 33/370 (8%)
Query: 53 IVLGTSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTP 112
++L + + GT V+ TG+ + +PVG LGR+I+ LG P+D G + + R
Sbjct: 74 VLLDDTADILAGTEVRRTGRVLEVPVGDGLLGRVIDPLGRPLDGGGPLQATARRPLERPA 133
Query: 113 PSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSG- 171
P+ E E L+TGIKV+D + P +G + + G GKT ++ I I + S
Sbjct: 134 PAIIERDFVTEPLQTGIKVVDALIPIGRGQRELIIGDRQTGKTAIAIDAI--INQKDSDV 191
Query: 172 LSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLT 231
+ V+ +G++ +IE + E + V V + ++P G + G
Sbjct: 192 ICVYVAIGQKASAVA----RVIET-LREHGALEYTTV--VVAEASDPPGLQYLAPFAGCA 244
Query: 232 IAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERI--- 288
IAE FRD+G+D L D++ ++ A E+S LL R P Y P ++ YL R+
Sbjct: 245 IAEYFRDQGQDALIVYDDLSKHAAAYRELSLLLRRPPGREAY-PG---DIFYLHSRLLER 300
Query: 289 -----ASTKKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPL 343
GS+T++ + A +L+ P + D + L D+ + G PA+D
Sbjct: 301 AAKLSPELGGGSLTALPIIETLAGELSAYIPTNLISITDGQIYLDSDLFAAGQRPAVDVG 360
Query: 344 DSTSRQLDPLIVGKKHYKIARLVQSTLQ----RYKELRDIISILGMDELSPEDKLLVARA 399
S SR + GK + R L+ ++ EL + + G L + + R
Sbjct: 361 LSVSR-----VGGKAQHPAIRKESGRLRLDYAQFLEL-EAFTRFGGL-LDAGTQKQITRG 413
Query: 400 RKMQRFLSQP 409
R+++ L QP
Sbjct: 414 RRLRELLKQP 423
>gnl|CDD|224077 COG1155, NtpA, Archaeal/vacuolar-type H+-ATPase subunit A [Energy
production and conversion].
Length = 588
Score = 110 bits (277), Expect = 6e-26
Identities = 94/318 (29%), Positives = 140/318 (44%), Gaps = 27/318 (8%)
Query: 110 RTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAK-A 168
R + + L TG +VID + P +KGG + G G GKTV + ++K A
Sbjct: 193 RKARPVKRKLPPEIPLVTGQRVIDTLFPVAKGGTAAVPGPFGSGKTV----SQHTLSKLA 248
Query: 169 HSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALT 228
+ ++ G GER E + E E K N +P + ++ N P R T
Sbjct: 249 DGDIVIYVGCGERGNEMTEVLQEFPELKDPNTGQPLMDRTVLIANTSNMPVAAREASIYT 308
Query: 229 GLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLA-------EEM 281
G+TIAE +RD G DV D+ R+ A E+S L MP GY L E
Sbjct: 309 GITIAEYYRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLGSRLAEFYERA 368
Query: 282 GYLQERIASTKKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVV---LSRDIASLGIYP 338
G ++ + GSIT I AV P D ++P T L V L +A+ +P
Sbjct: 369 GRVRLVSPEERFGSITVIGAVSPPGGDFSEP---VTQNTLRVVRVFWALDAALANRRHFP 425
Query: 339 AIDPLDSTSRQLDPLI------VGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPED 392
+I+ L+S S + L V + + LQR EL++I+ ++G D L ++
Sbjct: 426 SINWLNSYSLYTEDLRSWYDENVSPEWGALRDQAMEILQRESELQEIVQLVGYDALPEKE 485
Query: 393 KLLVARARKMQR--FLSQ 408
K ++ AR + R FL Q
Sbjct: 486 KSILDVAR-IIREDFLQQ 502
Score = 28.4 bits (64), Expect = 9.7
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 4 GKIIQCIGSVVDVEFPHNMVP-KIYNALKIENSELTLEVQQQLGDGIVRTI-VLGTSEGL 61
GKII+ G VV E M K+Y+ +K+ L E+ + G+ TI V + G+
Sbjct: 3 GKIIRISGPVVVAE---GMEGAKMYDVVKVGEMGLIGEIIRIEGN--RATIQVYEDTAGI 57
Query: 62 RRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDE 96
R G V+NTG+P+ + +G L I + + P+D
Sbjct: 58 RPGEKVENTGRPLSVELGPGLLKSIYDGIQRPLDV 92
>gnl|CDD|223134 COG0056, AtpA, F0F1-type ATP synthase, alpha subunit [Energy
production and conversion].
Length = 504
Score = 105 bits (264), Expect = 2e-24
Identities = 105/376 (27%), Positives = 168/376 (44%), Gaps = 45/376 (11%)
Query: 53 IVLGTSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTP 112
++LG ++ G VK TG+ + +PVG+ LGR+++ LG+PID KG I + +
Sbjct: 74 VILGDYSDIKEGDEVKRTGRILEVPVGEELLGRVVDALGNPIDGKGPIDATKTRPVEKKA 133
Query: 113 PSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGL 172
P + S E L+TGIK ID + P +G + + G GKT ++ I I + SG+
Sbjct: 134 PGVMDRKSVNEPLQTGIKAIDALIPIGRGQRELIIGDRQTGKTAIAIDTI--INQKGSGV 191
Query: 173 -SVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLT 231
++ +G++ + + E + + + V V ++ + + G
Sbjct: 192 KCIYVAIGQKRSTVANVVRTLEEHGAM-----DYTIV--VAASASDSAPLQYLAPYAGCA 244
Query: 232 IAEGFRDEGKDVLFFID------NIYRYTLAGTEVSALLGR------MPSAVGY-QPTLA 278
+AE FRD GKDVL D YR E+S LL R P V Y L
Sbjct: 245 MAEYFRDNGKDVLIVYDDLSKHAVAYR------EISLLLRRPPGREAYPGDVFYLHSRLL 298
Query: 279 EEMGYLQERIASTKKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYP 338
E L + + GSIT++ + A D++ P + D + L D+ + GI P
Sbjct: 299 ERAAKLSDEL---GGGSITALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNAGIRP 355
Query: 339 AIDPLDSTSRQLDPLIVG-----KKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDK 393
AI+ S SR VG K K+A ++ L +Y+EL + S G D L +
Sbjct: 356 AINVGLSVSR------VGSAAQIKAMKKVAGSLRLILAQYREL-EAFSQFGSD-LDKATR 407
Query: 394 LLVARARKMQRFLSQP 409
+ R +++ L QP
Sbjct: 408 KQLERGKRLTELLKQP 423
>gnl|CDD|238555 cd01135, V_A-ATPase_B, V/A-type ATP synthase (non-catalytic)
subunit B. These ATPases couple ATP hydrolysis to the
build up of a H+ gradient, but V-type ATPases do not
catalyze the reverse reaction. The Vacuolar (V-type)
ATPase is found in the membranes of vacuoles, the golgi
apparatus and in other coated vesicles in eukaryotes.
Archaea have a protein which is similar in sequence to
V-ATPases, but functions like an F-ATPase (called
A-ATPase). A similar protein is also found in a few
bacteria. This subfamily consists of the non-catalytic
beta subunit.
Length = 276
Score = 101 bits (254), Expect = 3e-24
Identities = 80/286 (27%), Positives = 127/286 (44%), Gaps = 21/286 (7%)
Query: 73 PIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVI 132
+ +PV + LGRI N G PID I + I+ P + +E+++TGI I
Sbjct: 1 TLKVPVSEDMLGRIFNGSGKPIDGGPEILAEEYLDINGPPINPVARIYPEEMIQTGISAI 60
Query: 133 DLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLS-------VFTGVGERTREG 185
D + +G K+ +F G+G+ EL IA+ + VF +G +
Sbjct: 61 DGMNTLVRGQKIPIFSGSGLPHN----ELAAQIARQAGVVGEEENFAVVFAAMGITMEDA 116
Query: 186 NDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFR-DEGKDVL 244
F + E + +V + N+P+ R+ LT AE ++GK VL
Sbjct: 117 RFFKDDFEETGALE-------RVVLFLNLANDPTIERIITPRMALTTAEYLAYEKGKHVL 169
Query: 245 FFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQER--IASTKKGSITSIQAV 302
+ ++ Y A E+SA +P GY + ++ + ER + GSIT I +
Sbjct: 170 VILTDMTNYAEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRVEGRNGSITQIPIL 229
Query: 303 YVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSR 348
+P DD+T P P T + +VL R + + GIYP I+ L S SR
Sbjct: 230 TMPNDDITHPIPDLTGYITEGQIVLDRQLHNRGIYPPINVLPSLSR 275
>gnl|CDD|235248 PRK04192, PRK04192, V-type ATP synthase subunit A; Provisional.
Length = 586
Score = 104 bits (263), Expect = 4e-24
Identities = 116/388 (29%), Positives = 163/388 (42%), Gaps = 105/388 (27%)
Query: 74 IMIPVGKATLGRIINVLG-------DPI----DEKGNISNKYVSSIHRTP-----PSYEE 117
IM+P G + G + ++ D I DE G ++ + + P P E+
Sbjct: 149 IMVPPGVS--GTVKEIVSEGDYTVDDTIAVLEDEDGEGVE--LTMMQKWPVRRPRPYKEK 204
Query: 118 LSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAK-AHSGLSVFT 176
L E L TG +VID P +KGG + G G GKTV + +AK A + + ++
Sbjct: 205 LPPV-EPLITGQRVIDTFFPVAKGGTAAIPGPFGSGKTV----TQHQLAKWADADIVIYV 259
Query: 177 GVGERTREGNDFYHEMIEAKVVNLDK-PEKSKVSMVYGQMNEP-SGNRL--R-------- 224
G GER GN EM E L++ PE + +P +G L R
Sbjct: 260 GCGER---GN----EMTEV----LEEFPE----------LIDPKTGRPLMERTVLIANTS 298
Query: 225 ---VA------LTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQP 275
VA TG+TIAE +RD G DVL D+ R+ A E+S L MP GY P
Sbjct: 299 NMPVAAREASIYTGITIAEYYRDMGYDVLLMADSTSRWAEALREISGRLEEMPGEEGY-P 357
Query: 276 TLAEEMGYLQERIAS------------TKKGSITSIQAVYVPADDLTDPSPATTFAHLDS 323
YL R+A ++GS+T I AV P D ++P T
Sbjct: 358 A------YLASRLAEFYERAGRVKTLGGEEGSVTIIGAVSPPGGDFSEPVTQNTLR---- 407
Query: 324 TVV-----LSRDIASLGIYPAIDPLDSTSR---QLDPLIVGKKHYKIARLVQ---STLQR 372
+V L ++A +PAI+ L S S Q+ P L LQR
Sbjct: 408 -IVKVFWALDAELADRRHFPAINWLTSYSLYLDQVAPWWEENVDPDWRELRDEAMDLLQR 466
Query: 373 YKELRDIISILGMDELSPEDK--LLVAR 398
EL++I+ ++G D L ED+ L VAR
Sbjct: 467 EAELQEIVRLVGPDALPEEDRLILEVAR 494
>gnl|CDD|132367 TIGR03324, alt_F1F0_F1_al, alternate F1F0 ATPase, F1 subunit alpha.
A small number of taxonomically diverse prokaryotic
species, including Methanosarcina barkeri, have what
appears to be a second ATP synthase, in addition to the
normal F1F0 ATPase in bacteria and A1A0 ATPase in
archaea. These enzymes use ion gradients to synthesize
ATP, and in principle may run in either direction. This
model represents the F1 alpha subunit of this apparent
second ATP synthase.
Length = 497
Score = 103 bits (259), Expect = 8e-24
Identities = 101/423 (23%), Positives = 181/423 (42%), Gaps = 40/423 (9%)
Query: 50 VRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIH 109
V ++LG L+ G V+ TG+ + +PVG LGR+++ LG P+D G +++ I
Sbjct: 71 VGVVLLGEYSHLQAGDEVERTGRVMDVPVGDGLLGRVVDPLGRPLDGGGPLASSPRLPIE 130
Query: 110 RTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAH 169
R P + + L+TG+KVID + P +G + + G GKT ++ I N K
Sbjct: 131 RPAPPIMDRAPVTVPLQTGLKVIDALIPIGRGQRELILGDRQTGKTAIAIDTILN-QKGR 189
Query: 170 SGLSVFTGVGERTREGNDFYHEMIEAKVV-NL-DKPEKSKVSMVYGQMNEPSGNRLRVAL 227
+ L ++ +G+R AKVV NL + +V + N+P G +
Sbjct: 190 NVLCIYCAIGQRASA---------VAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIAPY 240
Query: 228 TGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQER 287
+I E F ++G+DVL D++ ++ A E+S LL R P + + L ER
Sbjct: 241 AATSIGEHFMEQGRDVLIVYDDLTQHARAYRELSLLLRRPPGREAFPGDIFYVHSRLLER 300
Query: 288 IASTKK----GSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPL 343
+ GS+T++ + A +++ P + D + LS + LG+ PA+D
Sbjct: 301 STHLNEELGGGSLTALPIIETEAQNISAYIPTNLISITDGQIYLSPTLFELGVLPAVDVG 360
Query: 344 DSTSRQLDPLIVGKKHYKIARLVQSTLQ----RYKELRDIISILGMDELSPEDKLLVARA 399
S SR + GK R V L+ +++EL L + +
Sbjct: 361 KSVSR-----VGGKAQLAAYRAVAGDLKLAYAQFEELETFARF--GARLDENTRKTIEHG 413
Query: 400 RKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAI 459
R+++ L Q +++ + +++G D + A + + AI
Sbjct: 414 RRIRACLKQT----------QSSPLTVPQQIAILLALTNGLFDGVDLDA---MPEAESAI 460
Query: 460 KKS 462
+ +
Sbjct: 461 RAA 463
>gnl|CDD|233245 TIGR01042, V-ATPase_V1_A, V-type (H+)-ATPase V1, A subunit. This
models eukaryotic vacuolar (H+)-ATPase that is
responsible for acidifying cellular compartments. This
enzyme shares extensive sequence similarity with
archaeal ATP synthase [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 591
Score = 102 bits (256), Expect = 3e-23
Identities = 97/332 (29%), Positives = 152/332 (45%), Gaps = 54/332 (16%)
Query: 110 RTP-PSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKA 168
R+P P E+L ++ LL TG +V+D + P +GG + G G GKTV I+++
Sbjct: 195 RSPRPVTEKLPANTPLL-TGQRVLDALFPCVQGGTTAIPGAFGCGKTV--------ISQS 245
Query: 169 HSGLS-----VFTGVGERTREGNDFYHEMIEAKVVNLDKPEKS------------KVSMV 211
S S V+ G GER GN EM E V +D PE + + ++V
Sbjct: 246 LSKYSNSDAIVYVGCGER---GN----EMAE---VLMDFPELTMEVDGREESIMKRTTLV 295
Query: 212 YGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAV 271
N P R TG+T+AE FRD G +V D+ R+ A E+S L MP+
Sbjct: 296 ANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADS 355
Query: 272 GYQPTLAEEMGYLQERIASTK-------KGSITSIQAVYVPADDLTDPSPATTFAHLDST 324
GY L + ER K +GS++ + AV P D +DP + T +
Sbjct: 356 GYPAYLGARLASFYERAGRVKCLGSPEREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVF 415
Query: 325 VVLSRDIASLGIYPAIDPLDSTS---RQLDPLIVGKKHY----KIARLVQSTLQRYKELR 377
L + +A +P+++ L S S R L+ +K Y + + LQ ++L
Sbjct: 416 WGLDKKLAQRKHFPSVNWLISYSKYMRALEEFY--EKFYPEFVPLRTKAKEILQEEEDLN 473
Query: 378 DIISILGMDELSPEDKLLVARARKMQR-FLSQ 408
+I+ ++G D L+ DK+ + A+ ++ FL Q
Sbjct: 474 EIVQLVGKDALAETDKITLEVAKLIKEDFLQQ 505
Score = 29.3 bits (66), Expect = 5.0
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Query: 4 GKIIQCIGSVVDVEFPHNMV-PKIYNALKIENSELTLEVQQQLGDGIVRTI-VLGTSEGL 61
G I + G VV E NM +Y +++ + EL E+ + GD TI V + GL
Sbjct: 3 GYIYKVSGPVVVAE---NMAGAAMYELVRVGHDELVGEIIRLEGD--KATIQVYEETSGL 57
Query: 62 RRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISN 102
G V TGKP+ + +G LG I + + P+ S
Sbjct: 58 TVGDPVLRTGKPLSVELGPGILGNIFDGIQRPLKAIAEQSQ 98
>gnl|CDD|238552 cd01132, F1_ATPase_alpha, F1 ATP synthase alpha, central domain.
The F-ATPase is found in bacterial plasma membranes,
mitochondrial inner membranes and in chloroplast
thylakoid membranes. It has also been found in the
archaea Methanosarcina barkeri. It uses a proton
gradient to drive ATP synthesis and hydrolyzes ATP to
build the proton gradient. The extrinisic membrane
domain, F1, is composed of alpha, beta, gamma, delta and
epsilon subunits with a stoichiometry of 3:3:1:1:1. The
alpha subunit of the F1 ATP synthase can bind
nucleotides, but is non-catalytic.
Length = 274
Score = 93.5 bits (233), Expect = 2e-21
Identities = 79/282 (28%), Positives = 124/282 (43%), Gaps = 22/282 (7%)
Query: 76 IPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLI 135
+PVG+A LGR+++ LG+PID KG I K I P S E L+TGIK ID +
Sbjct: 4 VPVGEALLGRVVDALGNPIDGKGPIETKERRPIESKAPGIIPRKSVNEPLQTGIKAIDAM 63
Query: 136 CPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEA 195
P +G + + G GKT ++ I N K ++ +G++ +
Sbjct: 64 IPIGRGQRELIIGDRQTGKTAIAIDTIIN-QKGKKVYCIYVAIGQK------------AS 110
Query: 196 KVVNLDKPEKSKVSMVY-----GQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNI 250
V + K + +M Y ++P+ + TG + E F D GK L D++
Sbjct: 111 TVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYTGCAMGEYFMDNGKHALIIYDDL 170
Query: 251 YRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIA----STKKGSITSIQAVYVPA 306
+ +A ++S LL R P Y + L ER A GS+T++ + A
Sbjct: 171 SKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNDELGGGSLTALPIIETQA 230
Query: 307 DDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSR 348
D++ P + D + L D+ + GI PAI+ S SR
Sbjct: 231 GDVSAYIPTNVISITDGQIFLETDLFNKGIRPAINVGLSVSR 272
>gnl|CDD|238554 cd01134, V_A-ATPase_A, V/A-type ATP synthase catalytic subunit A.
These ATPases couple ATP hydrolysis to the build up of a
H+ gradient, but V-type ATPases do not catalyze the
reverse reaction. The Vacuolar (V-type) ATPase is found
in the membranes of vacuoles, the golgi apparatus and in
other coated vesicles in eukaryotes. Archaea have a
protein which is similar in sequence to V-ATPases, but
functions like an F-ATPase (called A-ATPase). A similar
protein is also found in a few bacteria.
Length = 369
Score = 93.8 bits (234), Expect = 6e-21
Identities = 86/320 (26%), Positives = 136/320 (42%), Gaps = 54/320 (16%)
Query: 64 GTIVKNTGKP--IMIPVGKATLGRIINVLGD--------PIDEKGNISNKYVSSIHRTP- 112
GT+ +N+ IM+P I GD ++ G + ++ + + P
Sbjct: 68 GTVPENSLIEHKIMVPPRVRGTVTYIAPAGDYTVDDVILEVEFDGKK--EEITMVQKWPV 125
Query: 113 ----PSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAK- 167
P E+L + E L TG +V+D + P KGG + G G GKTV + +++K
Sbjct: 126 RQPRPVKEKLPPN-EPLLTGQRVLDTLFPVVKGGTAAIPGPFGCGKTV----IQQSLSKY 180
Query: 168 AHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVAL 227
++S + ++ G GER E + E E +P + ++ N P R
Sbjct: 181 SNSDIVIYVGCGERGNEMTEVLEEFPELTDPVTGEPLMKRTVLIANTSNMPVAAREASIY 240
Query: 228 TGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQER 287
TG+TIAE FRD G +V D+ R+ A E+S L MP GY YL R
Sbjct: 241 TGITIAEYFRDMGYNVALMADSTSRWAEALREISGRLEEMPGEEGYPA-------YLGAR 293
Query: 288 IAS--------------TKKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVV-----LS 328
+AS ++GS+T + AV P D ++P T +V L
Sbjct: 294 LASFYERAGRVKCLGSPGREGSVTIVGAVSPPGGDFSEPVTQATLR-----IVQVFWGLD 348
Query: 329 RDIASLGIYPAIDPLDSTSR 348
+ +A +P+I+ L S S+
Sbjct: 349 KKLAQRRHFPSINWLISYSK 368
>gnl|CDD|184795 PRK14698, PRK14698, V-type ATP synthase subunit A; Provisional.
Length = 1017
Score = 95.1 bits (236), Expect = 1e-20
Identities = 78/264 (29%), Positives = 114/264 (43%), Gaps = 22/264 (8%)
Query: 157 NMMELINNIAKAH-------SGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVS 209
NM L++N H + + ++ G GER E D E + K KP +
Sbjct: 662 NMPTLLHNTVTQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTV 721
Query: 210 MVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPS 269
++ N P R TG+TIAE FRD G DV D+ R+ A E+S L MP
Sbjct: 722 LIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPG 781
Query: 270 AVGYQPTLAEEMGYLQERIAST-------KKGSITSIQAVYVPADDLTDPSPATTFAHLD 322
GY LA ++ ER + GS++ I AV P D ++P T +
Sbjct: 782 EEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVK 841
Query: 323 STVVLSRDIASLGIYPAIDPLDSTSRQLDPLI------VGKKHYKIARLVQSTLQRYKEL 376
L D+A +PAI+ L S S +D + V + + LQ+ EL
Sbjct: 842 VFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNVDPEWKAMRDKAMELLQKEAEL 901
Query: 377 RDIISILGMDELSPEDK--LLVAR 398
++I+ I+G D L ++ LLVAR
Sbjct: 902 QEIVRIVGPDALPERERAILLVAR 925
Score = 34.6 bits (79), Expect = 0.12
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 110 RTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELI----NNI 165
R Y+E + L TG +VID P +KGG + G G GK V+ LI +
Sbjct: 196 RVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPFGSGKCVDGDTLILTKEFGL 255
Query: 166 AKAHSGLSVFTGVGERTREGNDFYHEMIE 194
K + G G++T EGN+ + E+ E
Sbjct: 256 IKIKDLYEILDGKGKKTVEGNEEWTELEE 284
>gnl|CDD|233244 TIGR01040, V-ATPase_V1_B, V-type (H+)-ATPase V1, B subunit. This
models eukaryotic vacuolar (H+)-ATPase that is
responsible for acidifying cellular compartments. This
enzyme shares extensive sequence similarity with
archaeal ATP synthase [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 466
Score = 89.8 bits (223), Expect = 2e-19
Identities = 99/394 (25%), Positives = 170/394 (43%), Gaps = 32/394 (8%)
Query: 39 LEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKG 98
LEV G+ V + GTS + T + TG + PV + LGR+ N G PID+
Sbjct: 42 LEVS---GNKAVVQVFEGTSGIDAKKTTCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGP 98
Query: 99 NISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNM 158
+ + I+ P + +E+++TGI ID++ ++G K+ +F AG+
Sbjct: 99 PVLAEDYLDINGQPINPYARIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPH---- 154
Query: 159 MELINNIAKA---HSGLSVFTGVGERTREGNDFYH-------EMIEAKVVNLDKPEK--- 205
N IA +GL ++F M A+ D E
Sbjct: 155 ----NEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSM 210
Query: 206 SKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDE-GKDVLFFIDNIYRYTLAGTEVSALL 264
+V + N+P+ R+ LT AE + K VL + ++ Y A EVSA
Sbjct: 211 ERVCLFLNLANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSYADALREVSAAR 270
Query: 265 GRMPSAVGYQPTLAEEMGYLQERIAST--KKGSITSIQAVYVPADDLTDPSPATTFAHLD 322
+P G+ + ++ + ER + GSIT I + +P DD+T P P T +
Sbjct: 271 EEVPGRRGFPGYMYTDLATIYERAGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITE 330
Query: 323 STVVLSRDIASLGIYPAIDPLDSTSRQLDPLI----VGKKHYKIARLVQSTLQRYKELRD 378
+ + R + + IYP I+ L S SR + I K H ++ + + K+++
Sbjct: 331 GQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYACYAIGKDVQA 390
Query: 379 IISILGMDELSPEDKLLVARARKMQR-FLSQPFH 411
+ +++G + LS ED L + K ++ F++Q +
Sbjct: 391 MKAVVGEEALSSEDLLYLEFLDKFEKNFIAQGPY 424
>gnl|CDD|217261 pfam02874, ATP-synt_ab_N, ATP synthase alpha/beta family,
beta-barrel domain. This family includes the ATP
synthase alpha and beta subunits the ATP synthase
associated with flagella.
Length = 69
Score = 78.3 bits (194), Expect = 3e-18
Identities = 32/69 (46%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 6 IIQCIGSVVDVEFPHNMVPKIYNALKIENSE---LTLEVQQQLGDGIVRTIVLGTSEGLR 62
I+Q IG VVDVEF +P +YNAL++E E L LG VR +V+G ++GL
Sbjct: 1 IVQVIGPVVDVEFGIGRLPGLYNALEVELVEFGNGLLGEVLNLGGDKVRVVVMGGTDGLS 60
Query: 63 RGTIVKNTG 71
RG VK TG
Sbjct: 61 RGDEVKRTG 69
>gnl|CDD|238540 cd01120, RecA-like_NTPases, RecA-like NTPases. This family includes
the NTP binding domain of F1 and V1 H+ATPases, DnaB and
related helicases as well as bacterial RecA and related
eukaryotic and archaeal recombinases. This group also
includes bacterial conjugation proteins and related DNA
transfer proteins involved in type II and type IV
secretion.
Length = 165
Score = 78.7 bits (194), Expect = 3e-17
Identities = 51/191 (26%), Positives = 75/191 (39%), Gaps = 30/191 (15%)
Query: 143 KVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDK 202
+ +FG G GKT ++L NIA G V+ + E E + K
Sbjct: 1 LILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDIEEEIEELTERLIG-------ESLK 52
Query: 203 PEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSA 262
+ +V+ ++P+ RL + AE R+ G D L +D + R A E+
Sbjct: 53 GALDNLIIVFATADDPAAARLL------SKAERLRERGGDDLIILDELTRLVRALREI-- 104
Query: 263 LLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQAVYVPADDLTDPS----PATTF 318
GY L EE+ L ER KG +T I + VP+ D DP
Sbjct: 105 -------REGYPGELDEELRELLERAR---KGGVTVIFTLQVPSGDKGDPRLTRGAQNLE 154
Query: 319 AHLDSTVVLSR 329
D+ +VLSR
Sbjct: 155 DIADTVIVLSR 165
>gnl|CDD|176999 CHL00059, atpA, ATP synthase CF1 alpha subunit.
Length = 485
Score = 82.7 bits (205), Expect = 6e-17
Identities = 88/306 (28%), Positives = 137/306 (44%), Gaps = 18/306 (5%)
Query: 50 VRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIH 109
V +++G ++ G+ VK TGK IPV +A LGR++N L PID KG IS I
Sbjct: 50 VGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVVNALAKPIDGKGEISASESRLIE 109
Query: 110 RTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAH 169
P S E L+TG+ ID + P +G + + G GKT + I N K
Sbjct: 110 SPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILN-QKGQ 168
Query: 170 SGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVS---MVYGQMNEPSGNRLRVA 226
+ + V+ +G++ A+VV + E+ + +V + P+ +
Sbjct: 169 NVICVYVAIGQKASS---------VAQVVTTLQ-ERGAMEYTIVVAETADSPATLQYLAP 218
Query: 227 LTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQE 286
TG +AE F G+ L D++ + A ++S LL R P Y + L E
Sbjct: 219 YTGAALAEYFMYRGRHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 278
Query: 287 RIA----STKKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDP 342
R A +GS+T++ V A D++ P + D + LS D+ + GI PAI+
Sbjct: 279 RAAKLSSQLGEGSMTALPIVETQAGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINV 338
Query: 343 LDSTSR 348
S SR
Sbjct: 339 GISVSR 344
>gnl|CDD|236448 PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.
Length = 502
Score = 81.7 bits (203), Expect = 1e-16
Identities = 49/155 (31%), Positives = 69/155 (44%), Gaps = 39/155 (25%)
Query: 26 IYNALK--IENSELTLEVQQ-----QLGDGIVR--------------------------- 51
I +K IEN + EV++ +GDGI R
Sbjct: 8 ISAIIKQQIENFDAEAEVEEVGTVISVGDGIARVYGLDNVMAGELLEFPGGVYGIALNLE 67
Query: 52 -----TIVLGTSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVS 106
++LG E ++ G VK TG+ + +PVG+A LGR++N LG PID KG I
Sbjct: 68 EDNVGAVILGDYEDIKEGDTVKRTGRILEVPVGEALLGRVVNPLGQPIDGKGPIEATETR 127
Query: 107 SIHRTPPSYEELSSSQELLETGIKVIDLICPFSKG 141
+ R P + S E L+TGIK ID + P +G
Sbjct: 128 PVERKAPGVIDRKSVHEPLQTGIKAIDAMIPIGRG 162
Score = 33.1 bits (77), Expect = 0.34
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 12/47 (25%)
Query: 228 TGLTIAEGFRDEGKDVLFFIDNI------YRYTLAGTEVSALLGRMP 268
G + E F D GKD L D++ YR ++S LL R P
Sbjct: 241 AGCAMGEYFMDNGKDALIVYDDLSKQAVAYR------QLSLLLRRPP 281
>gnl|CDD|179373 PRK02118, PRK02118, V-type ATP synthase subunit B; Provisional.
Length = 436
Score = 76.2 bits (188), Expect = 6e-15
Identities = 83/315 (26%), Positives = 132/315 (41%), Gaps = 38/315 (12%)
Query: 54 VLGTSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPID-------EKGNISNKYVS 106
V G + G+ G V G+P+ + ++ LGR N G PID E I V+
Sbjct: 54 VFGGTRGISTGDEVVFLGRPMQVTYSESLLGRRFNGSGKPIDGGPELEGEPIEIGGPSVN 113
Query: 107 SIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIA 166
+ R P E++ TGI +ID+ + K+ +F + G+ N L+ IA
Sbjct: 114 PVKRIVPR--------EMIRTGIPMIDVFNTLVESQKIPIFSVS--GEPYN--ALLARIA 161
Query: 167 -KAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRV 225
+A + + + G+G + F A + + M ++P L V
Sbjct: 162 LQAEADIIILGGMGLTFDDYLFFKDTFENAGAL-------DRTVMFIHTASDPPVECLLV 214
Query: 226 ALTGLTIAEGFR-DEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYL 284
L +AE F + K VL + ++ + A E+S + ++PS GY +L ++
Sbjct: 215 PDMALAVAEKFALEGKKKVLVLLTDMTNFADALKEISITMDQIPSNRGYPGSLYSDLASR 274
Query: 285 QERIASTKK-GSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPL 343
E+ + GSIT I +P DD+T P P T + L R IDP
Sbjct: 275 YEKAVDFEDGGSITIIAVTTMPGDDVTHPVPDNTGYITEGQFYLRRG--------RIDPF 326
Query: 344 DSTSRQLDPLIVGKK 358
S SR L L++GKK
Sbjct: 327 GSLSR-LKQLVIGKK 340
>gnl|CDD|140212 PTZ00185, PTZ00185, ATPase alpha subunit; Provisional.
Length = 574
Score = 72.0 bits (176), Expect = 2e-13
Identities = 75/333 (22%), Positives = 137/333 (41%), Gaps = 51/333 (15%)
Query: 47 DGIVRTIVLGTSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLG--------------- 91
DG + I++ ++ G V TGK + IPVG LG+++N LG
Sbjct: 88 DGRIGIILMDNITEVQSGQKVMATGKLLYIPVGAGVLGKVVNPLGHEVPVGLLTRSRALL 147
Query: 92 DPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAG 151
+ G + + + R+P +Y L TG K +D + P +G + + G
Sbjct: 148 ESEQTLGKVDAGAPNIVSRSPVNYN--------LLTGFKAVDTMIPIGRGQRELIVGDRQ 199
Query: 152 VGKT-------VNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPE 204
GKT +N + + I ++ +S++ +G+R + V + +
Sbjct: 200 TGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRC------------SNVARIHRLL 247
Query: 205 KSKVSMVY-----GQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTE 259
+S ++ Y EP+G + +G+T+ E F + G+ L D++ + +A +
Sbjct: 248 RSYGALRYTTVMAATAAEPAGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQAVAYRQ 307
Query: 260 VSALLGRMPSAVGYQPTLAEEMGYLQERIASTKK----GSITSIQAVYVPADDLTDPSPA 315
+S LL R P Y + L ER A GS+T++ V ++D+T
Sbjct: 308 ISLLLRRPPGREAYPGDVFYLHSRLLERAAMLSPGKGGGSVTALPIVETLSNDVTAYIVT 367
Query: 316 TTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSR 348
+ D + L + + G PA++ S SR
Sbjct: 368 NVISITDGQIYLDTKLFTGGQRPAVNIGLSVSR 400
>gnl|CDD|237150 PRK12608, PRK12608, transcription termination factor Rho;
Provisional.
Length = 380
Score = 60.9 bits (148), Expect = 5e-10
Identities = 74/321 (23%), Positives = 122/321 (38%), Gaps = 48/321 (14%)
Query: 60 GLRRGTIVKNTGKPIMIPVGKATLGRIINVLG-DPIDEKGNISNKYVSSIHRTPPSYEEL 118
LR G +V+ +P L R+ +V G DP ++ +H E
Sbjct: 58 NLRTGDVVEGVARP---RERYRVLVRVDSVNGTDPEKLARRPHFDDLTPLHPRERLRLET 114
Query: 119 SSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTG- 177
S ++V+DL+ P KG + + GKTV + ++ +A H + +
Sbjct: 115 GSDDL----SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLL 170
Query: 178 VGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMN-EPSGNRLRVALTGLTIAEGF 236
+ ER E D +S VY P +RVA L A+
Sbjct: 171 IDERPEEVTDM---------------RRSVKGEVYASTFDRPPDEHIRVAELVLERAKRL 215
Query: 237 RDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKK--- 293
++GKDV+ +D++ R A GR S G A + + + +
Sbjct: 216 VEQGKDVVILLDSLTRLARAYNNEVESSGRTLSG-GVD---ARALQRPKRLFGAARNIEE 271
Query: 294 -GSITSIQAVYVP----ADDLTDPSPATTFAHLDST----VVLSRDIASLGIYPAIDPLD 344
GS+T I V D++ F T +VL R++A ++PAID
Sbjct: 272 GGSLTIIATALVDTGSRMDEV-------IFEEFKGTGNMEIVLDRELADKRVFPAIDIAK 324
Query: 345 STSRQLDPLIVGKKHYKIARL 365
S +R+ + L+ K+ K+ RL
Sbjct: 325 SGTRREELLLDSKELEKVRRL 345
>gnl|CDD|238548 cd01128, rho_factor, Transcription termination factor rho is a
bacterial ATP-dependent RNA/DNA helicase. It is a
homohexamer. Each monomer consists of an N-terminal
domain of the OB fold, which is responsible for binding
to cysteine rich nucleotides. This alignment is of the
C-terminal ATP binding domain.
Length = 249
Score = 44.2 bits (105), Expect = 5e-05
Identities = 67/268 (25%), Positives = 102/268 (38%), Gaps = 45/268 (16%)
Query: 130 KVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTG-VGERTREGNDF 188
+V+DL P KG + + GKT + + N I K H + + + ER E D
Sbjct: 5 RVVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDM 64
Query: 189 YHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFID 248
++ +V+ +EP ++VA L A+ + GKDV+ +D
Sbjct: 65 -QRSVKGEVI-------------ASTFDEPPERHVQVAEMVLEKAKRLVEHGKDVVILLD 110
Query: 249 NIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKK-----GSITSIQAVY 303
+I R A V G++ S G + +R + GS+T I
Sbjct: 111 SITRLARAYNTVVPPSGKILSG-GVDANAL----HKPKRFFGAARNIEEGGSLTIIATAL 165
Query: 304 VPADDLTDPSPATTFAHLDST----VVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKH 359
V D F T +VL R +A I+PAID L S +R+ + L
Sbjct: 166 VDTGSRMD---DVIFEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTRKEELL------ 216
Query: 360 YKIARLVQSTLQRYKELRDIISILGMDE 387
L LQR LR ++S MD
Sbjct: 217 -----LDPEELQRMWLLRRVLS--DMDP 237
>gnl|CDD|162030 TIGR00767, rho, transcription termination factor Rho. This RNA
helicase, the transcription termination factor Rho,
occurs in nearly all bacteria but is missing from the
Cyanobacteria, the Mollicutes (Mycoplasmas), and various
Lactobacillales including Streptococcus. It is also
missing, of course, from the Archaea, which also lack
Nus factors. Members of this family from Micrococcus
luteus, Mycobacterium tuberculosis, and related species
have a related but highly variable long, highly charged
insert near the amino end. Members of this family differ
in the specificity of RNA binding [Transcription,
Transcription factors].
Length = 415
Score = 43.5 bits (103), Expect = 2e-04
Identities = 67/283 (23%), Positives = 113/283 (39%), Gaps = 43/283 (15%)
Query: 130 KVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSG--LSVFTGVGERTREGND 187
+V+DL P KG + + GKTV + ++ I + H L V + ER E
Sbjct: 157 RVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLL-IDERPEE--- 212
Query: 188 FYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFI 247
V ++ + K +V V +EP+ ++VA + A+ + KDV+ +
Sbjct: 213 ---------VTDMQRSVKGEV--VASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILL 261
Query: 248 DNIYRYTLAGTEVSALLGRMPSAVGYQPT-LAEEMGYLQERIASTKKGSITSIQAVYVPA 306
D+I R A V+ G++ S G L + + GS+T I +
Sbjct: 262 DSITRLARAYNTVTPASGKVLSG-GVDANALHRPKRFFGAARNIEEGGSLTIIATALIDT 320
Query: 307 DDLTDPSPATTFAHLDST----VVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKI 362
D F T + L R +A I+PAID S +R+ + L++ +
Sbjct: 321 GSRMD---EVIFEEFKGTGNMELHLDRKLADRRIFPAIDIKKSGTRK-EELLLTPEE--- 373
Query: 363 ARLVQSTLQRYKELRDIISILGMDELSPEDKLLVARARKMQRF 405
LQ+ LR IIS MD + + L+ K+++
Sbjct: 374 -------LQKIWVLRKIIS--PMDSIEAMEFLI----SKLKKT 403
>gnl|CDD|235951 PRK07165, PRK07165, F0F1 ATP synthase subunit alpha; Validated.
Length = 507
Score = 40.3 bits (95), Expect = 0.002
Identities = 68/288 (23%), Positives = 110/288 (38%), Gaps = 50/288 (17%)
Query: 84 GRIINVLGD---PIDEKGNISNKYV--SSIHRTPPSYEELSSSQELLETGIKVIDLICPF 138
G+II++ G+ P + SSI + + E L TGI IDL+ P
Sbjct: 81 GKIIDIDGNIIYPEAQNPLSKKFLPNTSSIFNLAHGLMTVKTLNEQLYTGIIAIDLLIPI 140
Query: 139 SKGGKVGLFGGAGVGKT-VNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKV 197
KG + + G GKT + + +IN K + ++ +G++ + Y + E
Sbjct: 141 GKGQRELIIGDRQTGKTHIALNTIINQ--KNTNVKCIYVAIGQKRENLSRIYETLKEHDA 198
Query: 198 VN----LDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFID----- 248
+ +D P S Y Q P + AE DVL D
Sbjct: 199 LKNTIIIDAPSTS----PYEQYLAP--------YVAMAHAENISYN-DDVLIVFDDLTKH 245
Query: 249 -NIYRYTLAGTEVSALLGR------MPSAVGYQPTLAEEMGYLQERIASTK-KGSITSIQ 300
NIYR E++ L + P + + + L ER K + +IT++
Sbjct: 246 ANIYR------EIALLTNKPVGKEAFPGDMFFAHS------KLLERAGKFKNRKTITALP 293
Query: 301 AVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSR 348
+ +D+T + + D +V S D+ + G PAID S SR
Sbjct: 294 ILQTVDNDITSLISSNIISITDGQIVTSSDLFASGKLPAIDIDLSVSR 341
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 34.7 bits (79), Expect = 0.042
Identities = 10/66 (15%), Positives = 19/66 (28%)
Query: 140 KGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVN 199
G + + G G GKT L + G+ G + ++ K +
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS 60
Query: 200 LDKPEK 205
+
Sbjct: 61 GSGELR 66
>gnl|CDD|224080 COG1158, Rho, Transcription termination factor [Transcription].
Length = 422
Score = 33.8 bits (78), Expect = 0.18
Identities = 34/136 (25%), Positives = 52/136 (38%), Gaps = 22/136 (16%)
Query: 125 LETGIK-------VIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTG 177
LE VIDLI P KG + + GKT + + N I H +
Sbjct: 150 LERENGSTDLSTRVIDLISPIGKGQRGLIVAPPKAGKTTLLQNIANAITTNHPECELIVL 209
Query: 178 -VGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGF 236
+ ER E D ++ +V V +EP ++VA + A+
Sbjct: 210 LIDERPEEVTDM-QRSVKGEV-------------VASTFDEPPSRHVQVAEMVIEKAKRL 255
Query: 237 RDEGKDVLFFIDNIYR 252
+ GKDV+ +D+I R
Sbjct: 256 VEHGKDVVILLDSITR 271
Score = 32.6 bits (75), Expect = 0.45
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 17/80 (21%)
Query: 325 VVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILG 384
+ L R +A I+PAID S +R+ + L++ LQ+ LR I+S
Sbjct: 345 LHLDRKLAERRIFPAIDINKSGTRK-EELLLSPDE----------LQKMWVLRRILS--P 391
Query: 385 MDELSPEDKLLVARARKMQR 404
MDE+ + L+ K+++
Sbjct: 392 MDEIDAIEFLI----DKLKK 407
>gnl|CDD|236490 PRK09376, rho, transcription termination factor Rho; Provisional.
Length = 416
Score = 33.6 bits (78), Expect = 0.23
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 17/81 (20%)
Query: 325 VVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILG 384
+ L R +A I+PAID S +R+ + L L LQ+ LR I+S
Sbjct: 341 LHLDRKLAEKRIFPAIDINRSGTRKEELL-----------LSPEELQKVWILRKILS--P 387
Query: 385 MDELSPEDKLLVARARKMQRF 405
MDE+ + LL K+++
Sbjct: 388 MDEVEAMEFLL----DKLKKT 404
Score = 28.6 bits (65), Expect = 8.0
Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 25/128 (19%)
Query: 131 VIDLICPFSKGGKVGLFGGAGV-----GKTVNMMELINNIAKAHSGLSVFTG-VGERTRE 184
+IDLI P KG + GL V GKTV + + N+I H + + + ER E
Sbjct: 159 IIDLIAPIGKGQR-GLI----VAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEE 213
Query: 185 GNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVL 244
D ++ +V V +EP+ ++VA + A+ + GKDV+
Sbjct: 214 VTDM-QRSVKGEV-------------VASTFDEPAERHVQVAEMVIEKAKRLVEHGKDVV 259
Query: 245 FFIDNIYR 252
+D+I R
Sbjct: 260 ILLDSITR 267
>gnl|CDD|234402 TIGR03928, T7_EssCb_Firm, type VII secretion protein EssC,
C-terminal domain. This model describes the C-terminal
domain, or longer subunit, of the Firmicutes type VII
secretion protein EssC. This protein (homologous to EccC
in Actinobacteria) and the WXG100 target proteins are
the only homologous parts of type VII secretion between
Firmicutes and Actinobacteria [Protein fate, Protein and
peptide secretion and trafficking].
Length = 1296
Score = 33.0 bits (76), Expect = 0.45
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 138 FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHS 170
SK G + +FG G GK+ + LI ++A+ HS
Sbjct: 807 LSKDGHLAIFGSPGYGKSTFLQTLIMSLARQHS 839
>gnl|CDD|222165 pfam13481, AAA_25, AAA domain. This AAA domain is found in a wide
variety of presumed DNA repair proteins.
Length = 154
Score = 30.7 bits (70), Expect = 0.83
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 111 TPPSYEELSSSQELLETGIKVIDLICP--FSKGGKVGLFGGAGVGKTVNMMELINNIAKA 168
E L SS E L+ + + +GG L G G GK+ ++L +A
Sbjct: 1 AAEPSELLPSSAEDLDAPPPPLRWLVKGLLPRGGLTLLAGAPGTGKSTLALDLAAAVATG 60
Query: 169 HS 170
Sbjct: 61 RP 62
>gnl|CDD|227334 COG5001, COG5001, Predicted signal transduction protein containing
a membrane domain, an EAL and a GGDEF domain [Signal
transduction mechanisms].
Length = 663
Score = 31.8 bits (72), Expect = 1.0
Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 15/119 (12%)
Query: 307 DDLTD-PSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARL 365
D LT P+ FA LD+ + +R + ID LD P+ H RL
Sbjct: 231 DSLTGLPNRRRFFAELDARLAAARQSGRRLVLGVID-LDG----FKPVNDAFGHATGDRL 285
Query: 366 VQSTLQRYKELRD---IISILGMDELS------PEDKLLVARARKMQRFLSQPFHVAEV 415
+ +R K + + LG DE + +D L VA AR + L P+ + V
Sbjct: 286 LIEVGRRLKAFDGAPILAARLGGDEFALIIPALEDDALRVAGARALCESLQAPYDLRGV 344
>gnl|CDD|227922 COG5635, COG5635, Predicted NTPase (NACHT family) [Signal
transduction mechanisms].
Length = 824
Score = 30.9 bits (70), Expect = 1.9
Identities = 11/70 (15%), Positives = 20/70 (28%)
Query: 87 INVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGL 146
+N+L + + + EE + + K K+ +
Sbjct: 168 VNILEEVPLASQRSKRIFDLNTKGEKRFDEEFLLELTQSADDQDALPGLEALEKYAKLLI 227
Query: 147 FGGAGVGKTV 156
G G GKT
Sbjct: 228 LGAPGSGKTT 237
>gnl|CDD|118308 pfam09776, Mitoc_L55, Mitochondrial ribosomal protein L55. Members
of this family are involved in mitochondrial biogenesis
and G2/M phase cell cycle progression. They form a
component of the mitochondrial ribosome large subunit
(39S) which comprises a 16S rRNA and about 50 distinct
proteins.
Length = 116
Score = 28.6 bits (64), Expect = 2.9
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 372 RYKELRDIISI-LGMDELSPEDKLLVARARKMQ 403
RY E R I+ + L +D LSPE++ R RK +
Sbjct: 60 RYHEPRRILQLPLDLDTLSPEERRARLRKRKPK 92
>gnl|CDD|216186 pfam00910, RNA_helicase, RNA helicase. This family includes RNA
helicases thought to be involved in duplex unwinding
during viral RNA replication. Members of this family are
found in a variety of single stranded RNA viruses.
Length = 105
Score = 28.4 bits (64), Expect = 3.0
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 146 LFGGAGVGKTVNMMELINNIAKA 168
L+G G GK+ L + K
Sbjct: 3 LYGPPGCGKSTLAKYLARALLKH 25
>gnl|CDD|223543 COG0467, RAD55, RecA-superfamily ATPases implicated in signal
transduction [Signal transduction mechanisms].
Length = 260
Score = 29.4 bits (66), Expect = 3.5
Identities = 39/147 (26%), Positives = 57/147 (38%), Gaps = 25/147 (17%)
Query: 123 ELLETGIKVIDLICP--FSKGGKVGLFGGAGVGKTVNMMELINNIAKA-HSGLSVFTGVG 179
E + TGI +D I +G V + G G GKT+ ++ + A+ L V T
Sbjct: 3 ERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVST--- 59
Query: 180 ERTRE---------GNDF--YHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALT 228
E + E G D Y E + +++ EK VS G+ L +
Sbjct: 60 EESPEELLENARSFGWDLEVYIEKGKLAILDAFLSEKGLVS-------IVVGDPLDLEEL 112
Query: 229 GLTIAEGFRDEGKDVLFFIDNIYRYTL 255
I E EG D + ID+I TL
Sbjct: 113 LDRIREIVEKEGADRV-VIDSITELTL 138
>gnl|CDD|223164 COG0086, RpoC, DNA-directed RNA polymerase, beta' subunit/160 kD
subunit [Transcription].
Length = 808
Score = 29.9 bits (68), Expect = 3.5
Identities = 32/143 (22%), Positives = 44/143 (30%), Gaps = 25/143 (17%)
Query: 12 SVVDVEFPHNMVPKIYN----------ALKIENSELTLEVQQQLGDGIVRTIVLGTSEGL 61
++VD + P V +IY A I + IV TI +E
Sbjct: 458 TIVDAKLPSTPVGEIYLKDEYADDREKAEAIAKKIELTTGKV-----IVSTISPDLAELS 512
Query: 62 RRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHR---TPPSYEEL 118
T +P K L +I+N KG I K V+ S +
Sbjct: 513 IIVTTDGRRIFNRGLPEDKDVLVKIVNGKLI----KGVIDKKIVTIYREYGPEVASKALV 568
Query: 119 SSSQELLETGIKVIDLICPFSKG 141
+L GIK I F G
Sbjct: 569 KLLDKLKNLGIK---GIGGFGIG 588
>gnl|CDD|238278 cd00498, Hsp33, Heat shock protein 33 (Hsp33): Cytosolic protein
that acts as a molecular chaperone under oxidative
conditions. In normal (reducing) cytosolic conditions,
four conserved Cys residues are coordinated by a Zn ion.
Under oxidative stress (such as heat shock), the Cys
are reversibly oxidized to disulfide bonds, which causes
the chaperone activity to be turned on. Hsp33 is
homodimeric in its functional form.
Length = 275
Score = 29.1 bits (66), Expect = 4.0
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 30 LKIENSELTLEVQQQLGDGIVRTIVL-GTSEGLRRGTIVKNTGKPIMIPVGKATLGRIIN 88
LK + LT+++Q GDG V IV ++G RG + + GK +G +
Sbjct: 53 LK-FDGRLTVQIQ---GDGPVGLIVADADADGTVRGYVRNPEVDLPLNEDGKLDVGDAVG 108
>gnl|CDD|235803 PRK06451, PRK06451, isocitrate dehydrogenase; Validated.
Length = 412
Score = 29.4 bits (66), Expect = 4.8
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 142 GKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGE 180
G +G+ GGA +G T M E I+ A ++G +V G
Sbjct: 311 GNIGMLGGANIGDTGGMFEAIHGTAPKYAGKNVANPTGI 349
>gnl|CDD|235570 PRK05703, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 424
Score = 29.1 bits (66), Expect = 5.8
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 122 QELLETGIKVIDLICPFSKGGKVGLFGGAGVGKT 155
ELL I V + +GG V L G GVGKT
Sbjct: 203 LELLANMIPV-RVEDILKQGGVVALVGPTGVGKT 235
>gnl|CDD|234264 TIGR03569, NeuB_NnaB, N-acetylneuraminate synthase. This family is
a subset of the pfam03102 and is believed to include
only authentic NeuB N-acetylneuraminate (sialic acid)
synthase enzymes. The majority of the genes identified
by this model are observed adjacent to both the NeuA and
NeuC genes which together effect the biosynthesis of
CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Length = 329
Score = 28.7 bits (65), Expect = 7.6
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 20/66 (30%)
Query: 387 ELSPED-KLLVARA--RKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHL----ISSG 439
ELS ED + L + ++ FLS PF + D L + I SG
Sbjct: 72 ELSEEDHRELKEYCESKGIE-FLSTPFDLESA------------DFLEDLGVPRFKIPSG 118
Query: 440 ELDNIP 445
E+ N P
Sbjct: 119 EITNAP 124
>gnl|CDD|204902 pfam12396, DUF3659, Protein of unknown function (DUF3659). This
domain family is found in bacteria and eukaryotes, and
is approximately 70 amino acids in length.
Length = 64
Score = 26.3 bits (59), Expect = 8.0
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 59 EGLR---RGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKY 104
EGL G +V G VG+ G + G +DE G+I +K
Sbjct: 5 EGLTVNKDGNVVDKDGNV----VGRVVEGDPKKLAGRKVDEDGDILDKD 49
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.136 0.378
Gapped
Lambda K H
0.267 0.0817 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,206,860
Number of extensions: 2445982
Number of successful extensions: 2777
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2597
Number of HSP's successfully gapped: 112
Length of query: 467
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 367
Effective length of database: 6,502,202
Effective search space: 2386308134
Effective search space used: 2386308134
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.1 bits)