RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2897
(467 letters)
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP;
1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB:
1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D*
1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D*
2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Length = 482
Score = 913 bits (2362), Expect = 0.0
Identities = 313/470 (66%), Positives = 377/470 (80%), Gaps = 5/470 (1%)
Query: 1 MSDGKIIQCIGSVVDVEFPHNMVPKIYNALKIENSE--LTLEVQQQLGDGIVRTIVLGTS 58
+ G+I+ IG+VVDV+F + P I NAL+++ E L LEV Q LG+ VRTI + +
Sbjct: 12 ATTGRIVAVIGAVVDVQFDEGL-PPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGT 70
Query: 59 EGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEEL 118
EGL RG V ++G PI IPVG TLGRI+NV+G+PIDE+G I K ++IH P + E+
Sbjct: 71 EGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEM 130
Query: 119 SSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGV 178
S QE+L TGIKV+DL+ P++KGGK+GLFGGAGVGKTV +MELINN+AKAH G SVF GV
Sbjct: 131 SVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 190
Query: 179 GERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRD 238
GERTREGND YHEMIE+ V+NL SKV++VYGQMNEP G R RVALTGLT+AE FRD
Sbjct: 191 GERTREGNDLYHEMIESGVINLKDAT-SKVALVYGQMNEPPGARARVALTGLTVAEYFRD 249
Query: 239 -EGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSIT 297
EG+DVL FIDNI+R+T AG+EVSALLGR+PSAVGYQPTLA +MG +QERI +TKKGSIT
Sbjct: 250 QEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSIT 309
Query: 298 SIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGK 357
S+QA+YVPADDLTDP+PATTFAHLD+T VLSR IA LGIYPA+DPLDSTSR +DP IVG
Sbjct: 310 SVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGS 369
Query: 358 KHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVARARKMQRFLSQPFHVAEVFT 417
+HY +AR VQ LQ YK L+DII+ILGMDELS EDKL V+RARK+QRFLSQPF VAEVFT
Sbjct: 370 EHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFT 429
Query: 418 GKSGKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAIKKSKKLMK 467
G GK V LK+T+ GF I +GE D++PEQAFYMVG I+EA+ K+ KL +
Sbjct: 430 GHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLAE 479
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability,
potential tentoxin binding hydrolase; 3.20A {Spinacia
oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Length = 498
Score = 896 bits (2317), Expect = 0.0
Identities = 298/475 (62%), Positives = 368/475 (77%), Gaps = 8/475 (1%)
Query: 1 MSDGKIIQCIGSVVDVEFPHNMVPKIYNALKIENSE-------LTLEVQQQLGDGIVRTI 53
+ G+I Q IG V++V FP +P IYNAL ++ + +T EVQQ LG+ VR +
Sbjct: 18 KNLGRIAQIIGPVLNVAFPPGKMPNIYNALIVKGRDTAGQPMNVTCEVQQLLGNNRVRAV 77
Query: 54 VLGTSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPP 113
+ ++GL RG V +TG P+ +PVG TLGRI NVLG+P+D + + S IHR+ P
Sbjct: 78 AMSATDGLTRGMEVIDTGAPLSVPVGGPTLGRIFNVLGEPVDNLRPVDTRTTSPIHRSAP 137
Query: 114 SYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLS 173
++ +L + + ETGIKV++L+ P+ +GGK+GLFGGAGVGKTV +MELINNIAKAH G+S
Sbjct: 138 AFTQLDTKLSIFETGIKVVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVS 197
Query: 174 VFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIA 233
VF GVGERTREGND Y EM E+ V+N +SKV++VYGQMNEP G R+RV LT LT+A
Sbjct: 198 VFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGLTALTMA 257
Query: 234 EGFRD-EGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTK 292
E FRD +DVL FIDNI+R+ AG+EVSALLGRMPSAVGYQPTL+ EMG LQERI STK
Sbjct: 258 EYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTK 317
Query: 293 KGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDP 352
+GSITSIQAVYVPADDLTDP+PATTFAHLD+T VLSR +A+ GIYPA+DPLDSTS L P
Sbjct: 318 EGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQP 377
Query: 353 LIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVARARKMQRFLSQPFHV 412
IVG++HY+IA+ V+ TLQRYKEL+DII+ILG+DELS ED+L VARARK++RFLSQPF V
Sbjct: 378 RIVGEEHYEIAQRVKETLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFV 437
Query: 413 AEVFTGKSGKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAIKKSKKLMK 467
AEVFTG GKYV L +T+ GF LI SGELD++PEQAFY+VG IDEA K+ L
Sbjct: 438 AEVFTGSPGKYVGLAETIRGFQLILSGELDSLPEQAFYLVGNIDEATAKAMNLEM 492
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC
F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1
b.49.1.1 c.37.1.11
Length = 473
Score = 868 bits (2244), Expect = 0.0
Identities = 293/478 (61%), Positives = 371/478 (77%), Gaps = 18/478 (3%)
Query: 1 MSDGKIIQCIGSVVDVEFPHNMVPKIYNALKIENS---------ELTLEVQQQLGDGIVR 51
M+ G++IQ +G VVDV+F + +P IYNALKI++ +LTLEV LGD VR
Sbjct: 1 MTRGRVIQVMGPVVDVKFENGHLPAIYNALKIQHKARNENEVDIDLTLEVALHLGDDTVR 60
Query: 52 TIVLGTSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNI-SNKYVSSIHR 110
TI + +++GL RG V +TG PI +PVG+ TLGR+ NVLG+PID +G+I ++ IHR
Sbjct: 61 TIAMASTDGLIRGMEVIDTGAPISVPVGQVTLGRVFNVLGEPIDLEGDIPADARRDPIHR 120
Query: 111 TPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHS 170
P +EEL++ E+LETGIKV+DL+ P+ KGGK+GLFGGAGVGKTV + ELI+NIA+ H
Sbjct: 121 PAPKFEELATEVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHG 180
Query: 171 GLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGL 230
G+SVF GVGERTREGND YHEM ++ V+ SK +MV+GQMNEP G R+RVALTGL
Sbjct: 181 GISVFAGVGERTREGNDLYHEMKDSGVI-------SKTAMVFGQMNEPPGARMRVALTGL 233
Query: 231 TIAEGFRD-EGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIA 289
T+AE FRD +G+D L FIDNI+R+T AG+EVSALLGRMPSA+GYQPTLA EMG LQERI
Sbjct: 234 TMAEYFRDEQGQDGLLFIDNIFRFTQAGSEVSALLGRMPSAIGYQPTLATEMGQLQERIT 293
Query: 290 STKKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQ 349
ST KGSITSIQA+YVPADD TDP+PATTF+HLD+T L R +A +GIYPA+DPL STSR
Sbjct: 294 STAKGSITSIQAIYVPADDYTDPAPATTFSHLDATTNLERKLAEMGIYPAVDPLVSTSRA 353
Query: 350 LDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVARARKMQRFLSQP 409
L P IVG++HY++AR VQ TL+RYKEL+DII+ILGMDELS EDKL+V RAR++Q FLSQ
Sbjct: 354 LAPEIVGEEHYQVARKVQQTLERYKELQDIIAILGMDELSDEDKLVVHRARRIQFFLSQN 413
Query: 410 FHVAEVFTGKSGKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAIKKSKKLMK 467
FHVAE FTG+ G YV +K+T+ GF I G+ D++PE F +VG I+E ++K+K +
Sbjct: 414 FHVAEQFTGQPGSYVPVKETVRGFKEILEGKYDHLPEDRFRLVGRIEEVVEKAKAMGV 471
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis,
ATP-binding, hydrogen ION TRA hydrolase, ION transport;
2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A
3j0j_A* 1um2_C
Length = 578
Score = 485 bits (1251), Expect = e-168
Identities = 109/497 (21%), Positives = 198/497 (39%), Gaps = 41/497 (8%)
Query: 1 MSDGKIIQCIGSVVDVEFPHNMVPKIYNALKI--------ENSELTLEVQQQLGDGIVR- 51
+ G+ + G + VE M+ IY+ ++ +T V D +
Sbjct: 58 LKVGEPVVSTGLPLAVELGPGMLNGIYDGIQRPLERIREKTGIYITRGVVVHALDREKKW 117
Query: 52 --TIVLGTSEGLRRGTI---VKNTGKPIMIPVGKATLGRIINV--LGDPIDE-------- 96
T ++ + +R G + V G I V GR+ V G+ E
Sbjct: 118 AWTPMVKPGDEVRGGMVLGTVPEFGFTHKILVPPDVRGRVKEVKPAGEYTVEEPVVVLED 177
Query: 97 KGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTV 156
+ + + R P +L + TG++++D++ P + GG + G G GK+V
Sbjct: 178 GTELKMYHTWPVRRARPVQRKLDPNTPF-LTGMRILDVLFPVAMGGTAAIPGPFGSGKSV 236
Query: 157 NMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMN 216
L +++ + V+ G GER E D E E P + ++ N
Sbjct: 237 TQQSLAKW---SNADVVVYVGSGERGNEMTDVLVEFPELTDPKTGGPLMHRTVLIANTSN 293
Query: 217 EPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPT 276
P R G+TIAE FRD+G V D+ R+ A E+S+ L MP+ GY P
Sbjct: 294 MPVAAREASIYVGVTIAEYFRDQGFSVALMADSTSRWAEALREISSRLEEMPAEEGYPPY 353
Query: 277 LAEEMGYLQERIAST-----KKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDI 331
LA + ER ++G++T + AV P D+++P +T + + L +
Sbjct: 354 LAARLAAFYERAGKVITLGGEEGAVTIVGAVSPPGGDMSEPVTQSTLRIVGAFWRLDASL 413
Query: 332 ASLGIYPAIDPLDSTSRQLDPL------IVGKKHYKIARLVQSTLQRYKELRDIISILGM 385
A +PAI+ S S L V + + ++ + LQR L++I+ ++G
Sbjct: 414 AFRRHFPAINWNGSYSLFTSALDPWYRENVAEDYPELRDAISELLQREAGLQEIVQLVGP 473
Query: 386 DELSPEDKLLVARARKMQR-FLSQ-PFHVAEVFTGKSGKYVSLKDTLNGFHLISSGELDN 443
D L ++L++ R ++ FL Q +H + ++ Y +K L + +
Sbjct: 474 DALQDAERLVIEVGRIIREDFLQQNAYHEVDAYSSMKKAYGIMKMILAFYKEAEAAIKRG 533
Query: 444 IPEQAFYMVGTIDEAIK 460
+ + ++ +
Sbjct: 534 VSIDEILQLPVLERIGR 550
Score = 60.5 bits (147), Expect = 5e-10
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Query: 1 MSDGKIIQCIGSVVDVEFPHNMVPKIYNALKIENSELTLEVQQQLGDGIVRTIVLGTSEG 60
M G I + G V + ++Y+ K+ L E+ + GD + TS G
Sbjct: 1 MIQGVIQKIAGPAVIAKGMLG--ARMYDISKVGEEGLVGEIIRLDGDTAFVQVYEDTS-G 57
Query: 61 LRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYV 105
L+ G V +TG P+ + +G L I + + P++ + Y+
Sbjct: 58 LKVGEPVVSTGLPLAVELGPGMLNGIYDGIQRPLERIREKTGIYI 102
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop,
phenylalanine mutant, hydrolase; 2.35A {Pyrococcus
horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A
3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A
3sdz_A
Length = 588
Score = 478 bits (1232), Expect = e-165
Identities = 116/501 (23%), Positives = 195/501 (38%), Gaps = 48/501 (9%)
Query: 4 GKIIQCIGSVVDVEFPHNMVPKIYNALKIENSEL-----------------------TLE 40
G+ + G+ + VE ++ IY+ ++ +
Sbjct: 62 GEPVVGTGASLSVELGPRLLTSIYDGIQRPLEVIREKTGDFIARGVTAPALPRDKKWHFI 121
Query: 41 VQQQLGDGIVRTIVLGTSE--GLRRGTI---VKNTGKPIMI-PVGKATLGRIINVLGDPI 94
+ ++GD +V ++G + I G+ + I G T+ +I + P
Sbjct: 122 PKAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPS 181
Query: 95 DEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGK 154
E + + P E+L L TG +VID P +KGG + G AG GK
Sbjct: 182 GEIKELKMYQRWPVRVKRPYKEKLPPE-VPLITGQRVIDTFFPQAKGGTAAIPGPAGSGK 240
Query: 155 TVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQ 214
TV +L + + + ++ G GER E D E + K KP + ++
Sbjct: 241 TVTQHQLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANT 297
Query: 215 MNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQ 274
N P R TG+TIAE FRD G DV D+ R+ A E+S L MP GY
Sbjct: 298 SNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYP 357
Query: 275 PTLAEEMGYLQERIA-------STKKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVL 327
LA ++ ER + GS++ I AV P D ++P T + L
Sbjct: 358 AYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWAL 417
Query: 328 SRDIASLGIYPAIDPLDSTSRQLDPL------IVGKKHYKIARLVQSTLQRYKELRDIIS 381
D+A +PAI+ L S S +D + + + + + LQ+ EL++I+
Sbjct: 418 DADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMRDKAMALLQKESELQEIVR 477
Query: 382 ILGMDELSPEDKLLVARARKMQR-FLSQPFHVAEVFTGKSGKYVSLKDTLNGFH-LISSG 439
I+G D L ++ ++ AR ++ +L Q K V++ L F+
Sbjct: 478 IVGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLLNFYDKTMEA 537
Query: 440 ELDNIPEQAFYMVGTIDEAIK 460
+P + + +E +
Sbjct: 538 INRGVPLEEIAKLPVREEIGR 558
Score = 81.3 bits (201), Expect = 1e-16
Identities = 24/113 (21%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Query: 1 MSDGKIIQCIGSVVDVEFPHNMVPKIYNALKIENSELTLEVQQQLGDGIVRTIVLGTSEG 60
++ G+II+ G +V + K+Y +++ L E+ + GD V + T+ G
Sbjct: 2 VAKGRIIRVTGPLVVADGMKG--AKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETA-G 58
Query: 61 LRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPP 113
+R G V TG + + +G L I + + P++ + +++ P
Sbjct: 59 VRPGEPVVGTGASLSVELGPRLLTSIYDGIQRPLEVIREKTGDFIARGVTAPA 111
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis,
ATP-binding, hydrogen ION TRA hydrolase, ION transport;
2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D
3j0j_D*
Length = 464
Score = 329 bits (845), Expect = e-109
Identities = 104/469 (22%), Positives = 187/469 (39%), Gaps = 45/469 (9%)
Query: 4 GKIIQCIGSVVDVEFPHNMVPKIYNALKIE---NSELTLEVQQQLGDGIVRTIVLGTSEG 60
I G ++ VE + + I+ +V + + + V + G
Sbjct: 9 TGITYISGPLLFVENAKD--LAYGAIVDIKDGTGRVRGGQVIE-VSEEYAVIQVFEETTG 65
Query: 61 LRRG-TIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELS 119
L T V + V K LGR N +G PID I+ + I P +
Sbjct: 66 LDLATTSVSLVEDVARLGVSKEMLGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVARR 125
Query: 120 SSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIA----------KAH 169
++ ++TGI ID++ +G K+ +F G+G+ ++ K
Sbjct: 126 KPEQFIQTGISTIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEE 185
Query: 170 SGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTG 229
VF +G RE + F E + S+ + + ++P+ R+
Sbjct: 186 PFAVVFAAMGITQRELSYFIQEFERTGAL-------SRSVLFLNKADDPTIERILTPRMA 238
Query: 230 LTIAEGFR-DEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQER- 287
LT+AE + VL + ++ Y+ A E+ A +P GY + ++ + ER
Sbjct: 239 LTVAEYLAFEHDYHVLVILTDMTNYSEALREIGAAREEIPGRRGYPGYMYTDLATIYERA 298
Query: 288 -IASTKKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDST 346
+ KKGS+T I + +P DD T P P T + + LSR++ GIYP IDPL S
Sbjct: 299 GVVEGKKGSVTQIPILSMPDDDRTHPIPDLTGYITEGQIQLSRELHRKGIYPPIDPLPSL 358
Query: 347 SRQLDPLI----VGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVARARKM 402
SR ++ + + H +++ + S ++R +++I+G D L+ D+ + A
Sbjct: 359 SRLMNNGVGKGKTREDHKQVSDQLYSAYANGVDIRKLVAIIGEDALTENDRRYLQFADAF 418
Query: 403 QRFLSQPFHVAEVFTGKSGKYVSLKDTLNG----FHLISSGELDNIPEQ 447
+RF S++++L ++ GEL I +
Sbjct: 419 ERFFINQGQQN----------RSIEESLQIAWALLSMLPQGELKRISKD 457
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase,
A1AO, ATP synthesis, hydrogen ION transport, ION
transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A*
3b2q_A* 2rkw_A* 3eiu_A*
Length = 469
Score = 244 bits (625), Expect = 6e-76
Identities = 102/462 (22%), Positives = 185/462 (40%), Gaps = 38/462 (8%)
Query: 4 GKIIQCIGSVVDVEFPHNMVPKIYNALKIENSELTLEVQQQLG--DGIVRTIVLGTSEGL 61
I Q G ++ VE + I+ + T+ Q L IV V + GL
Sbjct: 15 KTITQIAGPLIFVEKTEP--VGYNEIVNIKMGDGTVRRGQVLDSSADIVVVQVFEGTGGL 72
Query: 62 RRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSS 121
+ V TG+ + +P LGRI++ G+P D I + I+ +
Sbjct: 73 DKDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLPP 132
Query: 122 QELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSG---LSVFTGV 178
++ ++TGI ID +G K+ +F +G+ +++ + S VF +
Sbjct: 133 KDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAM 192
Query: 179 GERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFR- 237
G E F + + + + + ++P+ R+ LT AE
Sbjct: 193 GITNEEAQYFMSDFEKTGAL-------ERAVVFLNLADDPAVERIVTPRMALTAAEYLAY 245
Query: 238 DEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQER--IASTKKGS 295
+ G VL + +I Y A ++ A +P GY + ++ L ER I KGS
Sbjct: 246 EHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIVKGAKGS 305
Query: 296 ITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIV 355
+T I + +P DD+T P P + + +V++R++ GIYP I+ L S SR L +
Sbjct: 306 VTQIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSR-LMNSGI 364
Query: 356 GKK-----HYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVARARK-MQRFLSQP 409
G H ++ + + ++LR +++I+G + LS D + A +F+ Q
Sbjct: 365 GAGKTREDHKAVSDQMYAGYAEGRDLRGLVAIVGKEALSERDTKFLEFADLFEDKFVRQG 424
Query: 410 FHVAEVFTGKSGKYVSLKDTLNG----FHLISSGELDNIPEQ 447
+ +++DTL + +L I +
Sbjct: 425 RNEN----------RTIEDTLEIGWQILTHLPENQLGRIDNK 456
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta
structure, hydrolase; HET: ADP; 2.40A {Salmonella
typhimurium}
Length = 438
Score = 240 bits (614), Expect = 1e-74
Identities = 104/371 (28%), Positives = 174/371 (46%), Gaps = 29/371 (7%)
Query: 55 LGTSEGLRRGTIV-------KNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSS 107
L EG+ G V +P+G A LGR+++ G P+D +
Sbjct: 64 LEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVLDGGGKPLDGLPAPDTLETGA 123
Query: 108 IHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAK 167
+ P + + + + +L+TG++ I+ + +G ++GLF G+GVGK+V L+ +A+
Sbjct: 124 LITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSV----LLGMMAR 179
Query: 168 -AHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVA 226
+ + V +GER RE DF L +++ ++ + R++ A
Sbjct: 180 YTRADVIVVGLIGERGREVKDFIEN-------ILGPDGRARSVVIAAPADVSPLLRMQGA 232
Query: 227 LTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQE 286
IAE FRD G+ VL +D++ RY +A E++ +G P+ GY P++ ++ L E
Sbjct: 233 AYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVE 292
Query: 287 R--IASTKKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLD 344
R GSIT+ V DD DP + A LD +VLSR +A G YPAID
Sbjct: 293 RAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEA 352
Query: 345 STSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISI----LGMDELSPEDKLLVARAR 400
S SR + ++ ++HY RL + L ++ RD++S+ G D P +
Sbjct: 353 SISRAM-TALITEQHYARVRLFKQLLSSFQRNRDLVSVGAYAKGSD---PMLDKAITLWP 408
Query: 401 KMQRFLSQPFH 411
+++ FL Q
Sbjct: 409 QLEAFLQQGIF 419
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Length = 347
Score = 234 bits (600), Expect = 9e-74
Identities = 100/344 (29%), Positives = 164/344 (47%), Gaps = 20/344 (5%)
Query: 73 PIMIPVGKATLGRIINVLGDPIDEKGNISN-KYVSSIHRTPPSYEELSSSQELLETGIKV 131
I VG A LGR+I+ +G P++ + S++ PP + G++
Sbjct: 2 SHKIRVGDALLGRLIDGIGRPMESNIVAPYLPFERSLYAEPPDPLLRQVIDQPFILGVRA 61
Query: 132 IDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHE 191
ID + G ++G+F G+GVGK+ + + N A + + V +GER RE N+F
Sbjct: 62 IDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNG---ASADIIVLALIGERGREVNEFLAL 118
Query: 192 MIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIY 251
+ ++ SK +V + P+ R++ A T TIAE FRD+GK+VL +D++
Sbjct: 119 LPQST--------LSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVT 170
Query: 252 RYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQAVYVPADDLTD 311
RY A +V G G+ P++ + L ER KGSIT+I V + +D++ D
Sbjct: 171 RYARAARDVGLASGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVND 230
Query: 312 PSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQ 371
P + LD +VL+R++A +PAID S SR + +V +H + A + +
Sbjct: 231 PIGDEVRSILDGHIVLTRELAEENHFPAIDIGLSASR-VMHNVVTSEHLRAAAECKKLIA 289
Query: 372 RYKELRDIISI----LGMDELSPEDKLLVARARKMQRFLSQPFH 411
YK +I I +G D PE + + +Q F+ Q
Sbjct: 290 TYKNPELLIRIGEYTMGQD---PEADKAIKNRKLIQNFIQQSTK 330
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for
structural genomics, JCSG, protein structure initiative
ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima
MSB8}
Length = 515
Score = 101 bits (253), Expect = 4e-23
Identities = 101/432 (23%), Positives = 177/432 (40%), Gaps = 66/432 (15%)
Query: 16 VEFPHNMVPKIYNALKIENSELTLEVQQQLGDGIVRTIVLGTSEGLRRGTIVKNTGKPIM 75
VEF V + A +E V I+LG + ++ G V+ + I
Sbjct: 65 VEFVETGVKGV--AFNLEEDN-------------VGIIILGEYKDIKEGHTVRRLKRIIE 109
Query: 76 IPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLI 135
+PVG+ LGR++N LG+P+D KG I+ K I P L+TGIK ID +
Sbjct: 110 VPVGEELLGRVVNPLGEPLDGKGPINAKNFRPIEIKAPGVIYRKPVDTPLQTGIKAIDSM 169
Query: 136 CPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEA 195
P +G + + G GKT ++ I N K ++ +G++ ++
Sbjct: 170 IPIGRGQRELIIGDRQTGKTAIAIDTIIN-QKGQGVYCIYVAIGQK------------KS 216
Query: 196 KVVNLDKPEKSKVSMVY-----GQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNI 250
+ + + +M Y ++P+ + G + E F G+D L D++
Sbjct: 217 AIARIIDKLRQYGAMEYTTVVVASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDL 276
Query: 251 YRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQ----ERIA----STKKGSITSIQAV 302
++ +A ++S L+ R P Y P ++ YL ER GS+T++ V
Sbjct: 277 SKHAVAYRQLSLLMRRPPGREAY-PG---DIFYLHSRLLERAVRLNDKLGGGSLTALPIV 332
Query: 303 YVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVG-----K 357
A+D++ P + D + L + G PAI+ S SR VG K
Sbjct: 333 ETQANDISAYIPTNVISITDGQIYLEPGLFYAGQRPAINVGLSVSR------VGGSAQIK 386
Query: 358 KHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVARARKMQRFLSQPFH------ 411
++A +++ L +Y+EL + + + L P + + R +++ L Q +
Sbjct: 387 AMKQVAGMLRIDLAQYREL-ETFAQFATE-LDPATRAQIIRGQRLMELLKQEQYSPMPVE 444
Query: 412 --VAEVFTGKSG 421
V +F G G
Sbjct: 445 EQVVVLFAGVRG 456
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase,
single analysis, thermoalkaliphilic, hydrolase; 3.06A
{Bacillus SP} PDB: 1sky_B
Length = 502
Score = 100 bits (252), Expect = 4e-23
Identities = 116/457 (25%), Positives = 183/457 (40%), Gaps = 94/457 (20%)
Query: 31 KIENSELTLEVQQ-----QLGDGIVR--------------------------------TI 53
+IEN E LEV + Q+GDGI R +
Sbjct: 15 QIENYEADLEVVEVGTVIQVGDGIARVHGLEKVMAGELLEFENGVMGMAQNLEEDNVGVV 74
Query: 54 VLGTSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPP 113
+LG +R GT VK TG+ + +PVG+A LGR++N LG P+D +G I I P
Sbjct: 75 ILGPYTEIREGTQVKRTGRIMEVPVGEALLGRVVNPLGQPLDGRGPIETAEYRPIESPAP 134
Query: 114 SYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLS 173
+ S E L+TGIK ID + P +G + + G GKT ++ I N K +
Sbjct: 135 GVMDRKSVHEPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIIN-QKGQDVIC 193
Query: 174 VFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVY-----GQMNEPSGNRLRVALT 228
++ +G++ ++ V + + + ++ Y +EP+
Sbjct: 194 IYVAIGQK------------QSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAPYA 241
Query: 229 GLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMG---YLQ 285
G + E F +GK L D++ + A E+S LL R P Y P G YL
Sbjct: 242 GCAMGEYFMYKGKHALVVYDDLSKQAAAYRELSLLLRRPPGREAY-P------GDVFYLH 294
Query: 286 ----ERIA----STKKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIY 337
ER A GS+T++ + A D++ P + D + L D+ G+
Sbjct: 295 SRLLERAAKLSDEKGGGSLTALPFIETQAGDVSAYIPTNVISITDGQIFLESDLFYSGVR 354
Query: 338 PAIDPLDSTSRQLDPLIVG-----KKHYKIARLVQSTLQRYKELRDIISILGMDELSPED 392
PA++ S SR VG K K+A ++ L +Y+EL + G D L
Sbjct: 355 PAVNVGISVSR------VGGAAQIKAMKKVAGTLRLDLAQYREL-QAFAQFGSD-LDKAT 406
Query: 393 KLLVARARKMQRFLSQPFH--------VAEVFTGKSG 421
+ + R + L Q H V ++ +G
Sbjct: 407 QAKLNRGERTVEILKQDEHKPMPVEEQVISIYAVTNG 443
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability,
potential tentoxin binding hydrolase; 3.20A {Spinacia
oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Length = 507
Score = 100 bits (251), Expect = 6e-23
Identities = 111/454 (24%), Positives = 184/454 (40%), Gaps = 88/454 (19%)
Query: 31 KIENSELTLEVQQ-----QLGDGIVR--------------------------------TI 53
+IE ++V Q+GDGI R +
Sbjct: 16 RIEGYNREVKVVNTGTVLQVGDGIARIHGLDEVMAGELVEFEEGTIGIALNLESNNVGVV 75
Query: 54 VLGTSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPP 113
++G ++ G+ VK TG+ IPV +A LGR+IN L PID +G I+ I P
Sbjct: 76 LMGDGLMIQEGSSVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEITASESRLIESPAP 135
Query: 114 SYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLS 173
S E L+TG+ ID + P +G + + G GKT + I N + + +
Sbjct: 136 GIMSRRSVYEPLQTGLIAIDAMIPVGRGQRELIIGDRQTGKTAVATDTILN-QQGQNVIC 194
Query: 174 VFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVY-----GQMNEPSGNRLRVALT 228
V+ +G++ + V + + + +M Y + P+ + T
Sbjct: 195 VYVAIGQK------------ASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPYT 242
Query: 229 GLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQ--- 285
G +AE F + L D++ + A ++S LL R P Y P ++ YL
Sbjct: 243 GAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAY-PG---DVFYLHSRL 298
Query: 286 -ERIA----STKKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAI 340
ER A +GS+T++ V A D++ P + D + LS D+ + GI PAI
Sbjct: 299 LERAAKLSSLLGEGSMTALPIVETQAGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAI 358
Query: 341 DPLDSTSRQLDPLIVG-----KKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLL 395
+ S SR VG K K+A ++ L ++ EL + + D L +
Sbjct: 359 NVGISVSR------VGSAAQIKAMKKVAGKLKLELAQFAEL-EAFAQFASD-LDKATQNQ 410
Query: 396 VARARKMQRFLSQPFH--------VAEVFTGKSG 421
+AR ++++ L QP V ++TG +G
Sbjct: 411 LARGQRLRELLKQPQSAPLTVEEQVMTIYTGTNG 444
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP
ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A*
1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A*
2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Length = 510
Score = 98.9 bits (247), Expect = 2e-22
Identities = 107/464 (23%), Positives = 191/464 (41%), Gaps = 100/464 (21%)
Query: 31 KIENSELTLEVQQ-----QLGDGIVR--------------------------------TI 53
+I ++ ++++++ +GDGI R +
Sbjct: 15 RILGADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVV 74
Query: 54 VLGTSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPP 113
V G + ++ G IVK TG + +PVG+ LGR+++ LG+ ID KG I +K + P
Sbjct: 75 VFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAP 134
Query: 114 SYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLS 173
S +E ++TGIK +D + P +G + + G GKT ++ I N + + G
Sbjct: 135 GIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTD 194
Query: 174 -------VFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVY-----GQMNEPSGN 221
++ +G++ + V L K +M Y ++ +
Sbjct: 195 EKKKLYCIYVAIGQK------------RSTVAQLVKRLTDADAMKYTIVVSATASDAAPL 242
Query: 222 RLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEM 281
+ +G ++ E FRD GK L D++ + +A ++S LL R P Y P
Sbjct: 243 QYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAY-P------ 295
Query: 282 G---YLQ----ERIA----STKKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRD 330
G YL ER A + GS+T++ + A D++ P + D + L +
Sbjct: 296 GDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETE 355
Query: 331 IASLGIYPAIDPLDSTSRQLDPLIVG-----KKHYKIARLVQSTLQRYKELRDIISILGM 385
+ GI PAI+ S SR VG + ++A ++ L +Y+E+ + G
Sbjct: 356 LFYKGIRPAINVGLSVSR------VGSAAQTRAMKQVAGTMKLELAQYREV-AAFAQFGS 408
Query: 386 DELSPEDKLLVARARKMQRFLSQPFH--------VAEVFTGKSG 421
D L + L++R ++ L Q + VA ++ G G
Sbjct: 409 D-LDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRG 451
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase,
hydrolase-transport PROT complex; HET: ANP ADP; 3.26A
{Escherichia coli DH1} PDB: 2a7u_A
Length = 513
Score = 95.0 bits (237), Expect = 4e-21
Identities = 96/462 (20%), Positives = 177/462 (38%), Gaps = 93/462 (20%)
Query: 31 KIENSELTLEVQQ-----QLGDGIVR--------------------------------TI 53
+I + E + DG++R +
Sbjct: 15 RIAQFNVVSEAHNEGTIVSVSDGVIRIHGLADCMQGEMISLPGNRYAIALNLERDSVGAV 74
Query: 54 VLGTSEGLRRGTIVKNTGKPIMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPP 113
V+G L G VK TG+ + +PVG+ LGR++N LG PID KG + + S++ P
Sbjct: 75 VMGPYADLAEGMKVKCTGRILEVPVGRGLLGRVVNTLGAPIDGKGPLDHDGFSAVEAIAP 134
Query: 114 SYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLS 173
E S + ++TG K +D + P +G + + G GKT ++ I N +
Sbjct: 135 GVIERQSVDQPVQTGYKAVDSMIPIGRGQRELIIGDRQTGKTALAIDAIIN-QRDSGIKC 193
Query: 174 VFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVY-----GQMNEPSGNRLRVALT 228
++ +G++ + + N+ + + ++ +E + +
Sbjct: 194 IYVAIGQK------------ASTISNVVRKLEEHGALANTIVVVATASESAALQYLAPYA 241
Query: 229 GLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQP------------- 275
G + E FRD G+D L D++ + +A ++S LL R P + P
Sbjct: 242 GCAMGEYFRDRGEDALIIYDDLSKQAVAYRQISLLLRRPPGREAF-PGDVFYLHSRLLER 300
Query: 276 --TLAEEMGYLQERIASTKK-GSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIA 332
+ E + K GS+T++ + A D++ P + D + L ++
Sbjct: 301 AARVNAEYVEAFTKGEVKGKTGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLETNLF 360
Query: 333 SLGIYPAIDPLDSTSRQLDPLIVG-----KKHYKIARLVQSTLQRYKELRDIISILGMDE 387
+ GI PA++P S SR VG K K++ +++ L +Y+EL S D
Sbjct: 361 NAGIRPAVNPGISVSR------VGGAAQTKIMKKLSGGIRTALAQYREL-AAFSQFASD- 412
Query: 388 LSPEDKLLVARARKMQRFLSQPFH--------VAEVFTGKSG 421
L + + +K+ L Q + +F + G
Sbjct: 413 LDDATRKQLDHGQKVTELLKQKQYAPMSVAQQSLVLFAAERG 454
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 69.9 bits (170), Expect = 9e-13
Identities = 49/367 (13%), Positives = 107/367 (29%), Gaps = 85/367 (23%)
Query: 90 LGDPIDEKGN----ISNKYVSS---IHRTPPSYEELSSSQELLETGIKVIDLICPFSKGG 142
L PI + ++ Y+ ++ + + + S+ + +K+ +
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL--QPYLKLRQALLELRPAK 151
Query: 143 KVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTG------VGERTREGNDFYHEMIEAK 196
V + G G GKT + ++ ++ + EM++
Sbjct: 152 NVLIDGVLGSGKTW----VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL--EMLQKL 205
Query: 197 VVNLDKPEKSKVSMVYGQMNEPSG-NRLRVALTGLTIAEGFRDEGKDVLFFIDNIY---- 251
+ +D S+ N + ++ L L ++ + ++ L + N+
Sbjct: 206 LYQIDPNWTSRSD---HSSNIKLRIHSIQAELRRLLKSKPY----ENCLLVLLNVQNAKA 258
Query: 252 --------RYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQAVY 303
+ L T + + +A +L L T S+ Y
Sbjct: 259 WNAFNLSCK-ILLTTRFKQVTDFLSAATTTHISLDHHSMTL------TPDEVK-SLLLKY 310
Query: 304 V--PADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPA---------IDPLDSTSR---- 348
+ DL P T LS S+ A D L +
Sbjct: 311 LDCRPQDL--PREVLTTNPR----RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 349 QLDPLIVGKKHY----------KIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVAR 398
L+P +K + I ++ S + D++ + +++L LV +
Sbjct: 365 VLEPAEY-RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV--VNKL--HKYSLVEK 419
Query: 399 ARKMQRF 405
K
Sbjct: 420 QPKESTI 426
Score = 47.5 bits (112), Expect = 8e-06
Identities = 49/393 (12%), Positives = 107/393 (27%), Gaps = 121/393 (30%)
Query: 86 IINVLGDPIDEKGNISNKYVSSIHR---TPPSYEELSSSQELLETGIKVIDLICPFSKGG 142
I++V D N K V + + + + + S++ + +++ + SK
Sbjct: 21 ILSVFEDAF--VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL--SKQE 76
Query: 143 K-VGLFGGAGVGKTVN-MMELINNIAKAHSGLSVFTGVGERTREGND---F--YHEMIEA 195
+ V F + +M I + S ++ + +R R ND F Y+
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR-MYIEQRDRLYNDNQVFAKYNVSRLQ 135
Query: 196 KVVNL------DKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDN 249
+ L +P K+ + + G + G GK +
Sbjct: 136 PYLKLRQALLELRPAKNVL--IDG-VL------------------GS---GKTWV----- 166
Query: 250 IYRYTLAGTEVSALLGRMPSAV-----GYQPTLAEEMGYLQERIASTKKGSITSIQAVYV 304
L + +M + + + LQ
Sbjct: 167 ----ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ------------------- 203
Query: 305 PADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIAR 364
+D D +S + S +L L+ K Y+
Sbjct: 204 -----------KLLYQIDPNWTSRSDHSS----NIKLRIHSIQAELRRLLKSKP-YENCL 247
Query: 365 LVQSTLQRYKELRDIISILGMDELSPEDKLLVARARKMQRFLSQPFHVAEVFTGKSGKYV 424
LV L ++ + + + K+L+ ++ V + + + ++
Sbjct: 248 LV---------LLNVQNAKAWNAFNLSCKILL---------TTRFKQVTDFLSAATTTHI 289
Query: 425 SLKDTLNGFHLISSGEL---------DNIPEQA 448
SL L ++P +
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Score = 41.0 bits (95), Expect = 8e-04
Identities = 76/497 (15%), Positives = 134/497 (26%), Gaps = 165/497 (33%)
Query: 4 GKIIQCIGSVV--DVEFPHNMVPKIY--NALKIENSELTLEVQQQL-----------GDG 48
GK + V + M KI+ N + E LE+ Q+L D
Sbjct: 162 GK--TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 49 IVRTIVLGTS--EGLRR-------------------GTIVK--NTGKPIMIPVGKATLGR 85
+ S LRR N I++ T R
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL----TT--R 273
Query: 86 IINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLE--TGIKVIDL------ICP 137
V D + ++S H + + + LL + DL P
Sbjct: 274 FKQV----TDFLSAATTTHISLDHHSMTLTPD--EVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 138 FSKGGKVGLFGGA---GVG-----KTVNMMELINNIA------------KAHSGLSVF-- 175
++ + + G+ K VN +L I K LSVF
Sbjct: 328 R----RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383
Query: 176 -----TGV------GERTREGNDFYHEMIEAKVVNLD-KPEKSKVSMVYGQMNEPSGNRL 223
T + + +++ + +V K + +Y ++ N
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443
Query: 224 ---RVALTGLTIAEGFRDEGKDVLFFIDN-IYRYTLAGTEVSALLGRMPSAVGY---QPT 276
R + I + F + ++D Y + +G+
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPP-YLDQYFYSH-----------------IGHHLKNIE 485
Query: 277 LAEEMG-----YLQERIASTK-KGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRD 330
E M +L R K + T+ A + L
Sbjct: 486 HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ------------------- 526
Query: 331 IASLGIY-PAIDPLDST-SRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDEL 388
L Y P I D R ++ ++ ++ L K D++ I L
Sbjct: 527 ---LKFYKPYICDNDPKYERLVNAIL------DFLPKIEENLICSKYT-DLLRI----AL 572
Query: 389 SPEDKLLVARA-RKMQR 404
ED+ + A +++QR
Sbjct: 573 MAEDEAIFEEAHKQVQR 589
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.5 bits (128), Expect = 1e-07
Identities = 73/436 (16%), Positives = 127/436 (29%), Gaps = 143/436 (32%)
Query: 93 PIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGL---FGG 149
+ + + Y+++ +++ S+S L G L FGG
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNS-ALFRA-----------VGEGNAQLVAIFGG 162
Query: 150 AGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVS 209
G EL R+ YH ++ +
Sbjct: 163 QGNTDDY-FEEL---------------------RDLYQTYHVLVGDLI------------ 188
Query: 210 MVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDN-------IYRYTLAGTEVSA 262
+ S L + AE +G ++L +++N Y L +S
Sbjct: 189 -------KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY---LLSIPISC 238
Query: 263 -LLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQAVYVPADDLTDPSPATTFAHL 321
L+G + Y T A+ +G+ + S KG+ Q + V A + ++
Sbjct: 239 PLIG-VIQLAHYVVT-AKLLGFTPGELRSYLKGATGHSQGL-VTA---VAIAETDSWESF 292
Query: 322 DSTVVLSRDIA-SLGI-----YP--AIDPL---DST-------SRQLDPLIVGKKHYKIA 363
+V + + +G+ YP ++ P DS S L I ++
Sbjct: 293 FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML--SISNLTQEQVQ 350
Query: 364 RLVQSTLQRYKELRDI-ISIL-GMDEL----SPEDKL--LVARARKM-------Q----- 403
V T + + IS++ G L P+ L L RK Q
Sbjct: 351 DYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQS-LYGLNLTLRKAKAPSGLDQSRIPF 409
Query: 404 ---------RFL--SQPFH-------VAEVFTGKSGKYVSLK---------DTLNGFHLI 436
RFL + PFH + VS DT +G L
Sbjct: 410 SERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLR 469
Query: 437 SSGELDNIPEQAFYMV 452
+I E+ +
Sbjct: 470 VLS--GSISERIVDCI 483
>3pjx_A Cyclic dimeric GMP binding protein; ggdef-EAL tandem domain,
C-DI-GMP receptor, lyase; 2.00A {Pseudomonas
fluorescens} PDB: 3pjw_A 3pju_A* 3pjt_A* 3pfm_A
Length = 430
Score = 31.7 bits (73), Expect = 0.51
Identities = 10/68 (14%), Positives = 27/68 (39%), Gaps = 11/68 (16%)
Query: 362 IARLVQSTLQRYKELRDIISILGMDE-------LSPEDKLLVARARKMQRFLSQPFHVA- 413
+ + +Y E +++++ + E ++ E+ L +A+ + LS +
Sbjct: 78 VGEQLSRECAKYPETQNLVTRIRGGEFAVLAPGMTREEALQLAQ--SLDSALSSLYATGA 135
Query: 414 -EVFTGKS 420
+V S
Sbjct: 136 TDVAAVAS 143
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 31.7 bits (72), Expect = 0.55
Identities = 22/112 (19%), Positives = 46/112 (41%), Gaps = 17/112 (15%)
Query: 144 VGLFGGAGVGKTVNMMELINN---IAKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNL 200
V ++G AG GK+V E + + + SG + +G++ + G ++ + L
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGL---LMKLQNLCMRL 206
Query: 201 DKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYR 252
D+ E + E + +RLRV + + L +D+++
Sbjct: 207 DQEESFSQRL--PLNIEEAKDRLRVLM---------LRKHPRSLLILDDVWD 247
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 31.2 bits (70), Expect = 0.71
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 8/57 (14%)
Query: 115 YEELSSSQELLETGIKVIDLICPFSKGGK--VGLFGGAGVGKTVNMMELINNIAKAH 169
+++L+ Q+ +++ K K V + G AG G T +I +
Sbjct: 23 FDDLTEGQK------NAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTG 73
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA
capture mechanism, ATP-binding, hydrolase,
nucleotide-binding, RN binding; 2.35A {Thermotoga
maritima}
Length = 427
Score = 30.7 bits (70), Expect = 0.94
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 13/71 (18%)
Query: 325 VVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILG 384
+VLSR +A+ I+PAI+ L S +R+ + L L + TL++ LR ++S
Sbjct: 347 LVLSRQLANKRIFPAINLLLSGTRREELL-----------LDEETLKKVWLLRRMLS--A 393
Query: 385 MDELSPEDKLL 395
M E +L
Sbjct: 394 MTEEEGLTLIL 404
Score = 29.1 bits (66), Expect = 3.8
Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 15/123 (12%)
Query: 131 VIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFT-GVGERTREGNDFY 189
+IDL P KG + + GKT + E+ N IA+ H + ER E D
Sbjct: 165 LIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDERPEEVTDI- 223
Query: 190 HEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDN 249
E A V + + P +++VA L +A+ + DV+ +D+
Sbjct: 224 RESTNAIV-------------IAAPFDMPPDKQVKVAELTLEMAKRLVEFNYDVVILLDS 270
Query: 250 IYR 252
+ R
Sbjct: 271 LTR 273
>3f7c_A Protein of unknown function (DUF416); structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: CIT; 2.00A {Marinobacter aquaeolei VT8}
Length = 200
Score = 29.5 bits (66), Expect = 1.5
Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 7/77 (9%)
Query: 330 DIASLGIYPAIDPLDSTSRQLDPLIVGKKH--YKIARLVQSTLQRYKELRDIISILGMDE 387
+ + G+YPA D + L + KH + ++L T+ + E+ + G
Sbjct: 85 EYDAYGVYPAFDFCQLLEQALLNRLNPNKHRATEASQLATRTVMDFVEMSE-----GEGM 139
Query: 388 LSPEDKLLVARARKMQR 404
E + ++
Sbjct: 140 DENELVRVFEHHPLLKD 156
>3ice_A Transcription termination factor RHO; transcription, ATPase,
hexamer, helicase, RNA, RECA, OB fold ATP-binding,
hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli
k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Length = 422
Score = 30.3 bits (69), Expect = 1.6
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 13/71 (18%)
Query: 325 VVLSRDIASLGIYPAIDPLDSTSRQLDPLIVGKKHYKIARLVQSTLQRYKELRDIISILG 384
+ LSR IA ++PAID S +R+ + L Q LQ+ LR II
Sbjct: 346 LHLSRKIAEKRVFPAIDYNRSGTRKEELL-----------TTQEELQKMWILRKIIH--P 392
Query: 385 MDELSPEDKLL 395
M E+ + L+
Sbjct: 393 MGEIDAMEFLI 403
Score = 27.6 bits (62), Expect = 9.6
Identities = 31/138 (22%), Positives = 58/138 (42%), Gaps = 17/138 (12%)
Query: 116 EELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVF 175
E + S E L +V+DL P +G + + GKT+ + + +IA H +
Sbjct: 151 ERGNGSTEDLTA--RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLM 208
Query: 176 T-GVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAE 234
+ ER E + +++ +V V +EP+ ++VA + A+
Sbjct: 209 VLLIDERPEEVTEM-QRLVKGEV-------------VASTFDEPASRHVQVAEMVIEKAK 254
Query: 235 GFRDEGKDVLFFIDNIYR 252
+ KDV+ +D+I R
Sbjct: 255 RLVEHKKDVIILLDSITR 272
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 29.9 bits (67), Expect = 1.7
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 144 VGLFGGAGVGKTVNMMELINNIAKAHSGLSVF 175
+ + G G GK+V + EL + +
Sbjct: 56 LLVNGATGTGKSVLLRELAYTGLLRGDRMVIV 87
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii
OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus
horikoshii} PDB: 2dfv_A* 3gfb_A*
Length = 348
Score = 29.9 bits (68), Expect = 2.1
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 15/88 (17%)
Query: 117 ELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFT 176
E S + + LE G++ + + G+V L G T++ LI I K L++
Sbjct: 242 EFSGAPKALEQGLQAV------TPAGRVSLLGLYPGKVTIDFNNLI--IFK---ALTI-Y 289
Query: 177 GVGERTREGNDFYH--EMIEAKVVNLDK 202
G+ R +Y ++++ +NLD
Sbjct: 290 GITGR-HLWETWYTVSRLLQSGKLNLDP 316
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 29.1 bits (65), Expect = 3.4
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
Query: 106 SSIHRTPPSYEELSSSQELLETGIKVIDLICP--FSKGGKVGLFGGAGVGKTVNMMELIN 163
+S T P+ + + T I+ D I G + G +G GKT+ ++ +
Sbjct: 2 TSAEMTSPNNNSEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLY 61
Query: 164 NIAKAHSGLSVFTGVGERTRE 184
N VF E ++
Sbjct: 62 NGIIEFDEPGVFVTFEETPQD 82
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA
complex, elongation factor, winged- helix, bulge,
translation/RNA complex; 2.30A {Escherichia coli}
Length = 121
Score = 27.5 bits (61), Expect = 4.9
Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 4/80 (5%)
Query: 388 LSPEDKLLVARARKMQRFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHLISSGELDNIPEQ 447
S E + + +A + +P+ V ++ +++ TL G + I +
Sbjct: 1 FSEEQQAIWQKAEPLFGD--EPWWVRDLAKETGTDEQAMRLTLR--QAAQQGIITAIVKD 56
Query: 448 AFYMVGTIDEAIKKSKKLMK 467
+Y I E + L +
Sbjct: 57 RYYRNDRIVEFANMIRDLDQ 76
>2q9r_A Protein of unknown function; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; 1.91A {Shewanella baltica}
Length = 200
Score = 27.9 bits (62), Expect = 5.0
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 330 DIASLGIYPAIDPLDSTSRQLDPLIVGKKH--YKIARLVQSTLQRYKELRDIISILGMDE 387
D + G+YPA+D + + S L + + I++L ST+ Y E +D
Sbjct: 86 DFEAYGVYPAMDAVVAISTLLGAIQGKIEEDIVNISKLSSSTVANYIEAIS-----DVDL 140
Query: 388 LSPEDKLLVARARKMQR 404
+ V M+
Sbjct: 141 VDEALDDFVFAHEVMEE 157
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural
genomics, protein structure initiative; 2.49A
{Chromobacterium violaceum atcc 12472}
Length = 350
Score = 28.3 bits (64), Expect = 5.1
Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 28/85 (32%)
Query: 367 QSTLQRYKELRDIISILGMDELSPED-KLLVARARKMQ-RFLSQPFHVAEVFTGKSGKYV 424
++R++E L PE + LVA + + + PF V
Sbjct: 64 VKYVKRFEET----------RLQPEQMQKLVAEMKANGFKAICTPFDEESV--------- 104
Query: 425 SLKDTLNGFHL----ISSGELDNIP 445
D + + I+S + P
Sbjct: 105 ---DLIEAHGIEIIKIASCSFTDWP 126
>1iug_A Putative aspartate aminotransferase; wild type,
pyridoxal-5'-phosphate form, riken structural
genomics/proteomics initiative, RSGI; HET: LLP; 2.20A
{Thermus thermophilus} SCOP: c.67.1.3
Length = 352
Score = 28.3 bits (64), Expect = 5.2
Identities = 24/136 (17%), Positives = 39/136 (28%), Gaps = 51/136 (37%)
Query: 138 FSKGGKV-----GLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEM 192
F+ G +V G F E IA GL V E
Sbjct: 72 FAPGERVLVPVYGKFS-----------ERFYEIALEA-GLVV----------------ER 103
Query: 193 IEA---KVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLT-----IAEGFRDEGKDVL 244
++ + K + + +E S TG +A F+++ + L
Sbjct: 104 LDYPYGDTPRPEDVAKEGYAGLLLVHSETS--------TGALADLPALARAFKEKNPEGL 155
Query: 245 FFIDNIYRYTLAGTEV 260
D + +L EV
Sbjct: 156 VGADMV--TSLLVGEV 169
>3mtk_A Diguanylate cyclase/phosphodiesterase; structural genomics, PSI-2,
protein structure initiative; 2.24A
{Caldicellulosiruptor saccharolyticus}
Length = 178
Score = 27.8 bits (63), Expect = 6.1
Identities = 7/49 (14%), Positives = 15/49 (30%), Gaps = 8/49 (16%)
Query: 378 DIISILGMDE----LSPEDKLLVARARKMQRFLSQPFHVA--EVFTGKS 420
+ +G D E+ +M L P++V + +
Sbjct: 78 NKAFKIGFDRFAIICKSENISDFIE--RMLSQLLLPYNVNGNLIRVNFN 124
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 28.3 bits (63), Expect = 6.5
Identities = 38/347 (10%), Positives = 86/347 (24%), Gaps = 92/347 (26%)
Query: 108 IHRTPPSYEE--LSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNI 165
I R+ P+ + L++++E + + + ++ N +E +
Sbjct: 1215 IGRSVPAPGKGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALK-- 1272
Query: 166 AKAHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQM--NEPSGNRL 223
E + E + + + +S++ Q + +
Sbjct: 1273 --LE---------AEEIPSEDQN--EFLLERTREIHNEAESQLRAAQQQWGNDFYKRDPR 1319
Query: 224 RVALTGLTIAEGFRDEGKDVLFFIDNIYRYTLAG--TEVSA---LLGRMPSAVGYQPTLA 278
L G G + V F T A E + ++ + + G
Sbjct: 1320 IAPLRGALATYGLTIDDLGVASFHGT---STKANDKNESATINEMMKHLGRSEGNP---- 1372
Query: 279 EEMGYLQERIASTK------KG------SITSIQAVY---VPAD-DLTDPSPATTFAHLD 322
K KG ++Q + +P + + + +
Sbjct: 1373 -------VIGVFQKFLTGHPKGAAGAWMMNGALQILNSGIIPGNRNADNVDKI--LEQFE 1423
Query: 323 STVVLSRDIASLGIYPAIDPLDSTS---------RQLDPLIVGKKHYKIARLVQSTLQRY 373
+ S+ + + G+ TS IV Y + + Y
Sbjct: 1424 YVLYPSKTLKTDGVRAVS----ITSFGFGQKGGQ-----AIVVHPDYLYGAITEDRYNEY 1474
Query: 374 KELRDIISILGMDELSPEDKLLVARARKMQRFLSQPFHVAEVFTGKS 420
AR + +F ++F K
Sbjct: 1475 VAKVS------------------AREKSAYKFFHNGMIYNKLFVSKE 1503
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 27.9 bits (62), Expect = 6.9
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 119 SSSQELLETGIKVIDLICP--FSKGGKVGLFGGAGVGKTVNMMELINNIAK 167
+++GI D + F +G V L GG G GKT + I A+
Sbjct: 6 YQPVRRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAE 56
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor,
TIM barrel, sialic acid synthase, transfera; HET: WQP;
1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A*
1xuu_A 3cm4_A
Length = 349
Score = 27.5 bits (62), Expect = 9.3
Identities = 15/65 (23%), Positives = 19/65 (29%), Gaps = 18/65 (27%)
Query: 387 ELSPED-KLLVARARKMQ-RFLSQPFHVAEVFTGKSGKYVSLKDTLNGFHL----ISSGE 440
L+ ED L F+S F A L + I SGE
Sbjct: 87 ALNEEDEIKLKEYVESKGMIFISTLFSRAAA------------LRLQRMDIPAYKIGSGE 134
Query: 441 LDNIP 445
+N P
Sbjct: 135 CNNYP 139
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.136 0.378
Gapped
Lambda K H
0.267 0.0774 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,201,716
Number of extensions: 464123
Number of successful extensions: 1313
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1252
Number of HSP's successfully gapped: 56
Length of query: 467
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 370
Effective length of database: 3,993,456
Effective search space: 1477578720
Effective search space used: 1477578720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.4 bits)