RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2897
(467 letters)
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 356 bits (915), Expect = e-122
Identities = 201/276 (72%), Positives = 236/276 (85%), Gaps = 2/276 (0%)
Query: 74 IMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVID 133
I IPVG TLGRI+NV+G+PIDE+G I K ++IH P + E+S QE+L TGIKV+D
Sbjct: 1 IRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVD 60
Query: 134 LICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMI 193
L+ P++KGGK+GLFGGAGVGKTV +MELINN+AKAH G SVF GVGERTREGND YHEMI
Sbjct: 61 LLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMI 120
Query: 194 EAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDE-GKDVLFFIDNIYR 252
E+ V+NL K SKV++VYGQMNEP G R RVALTGLT+AE FRD+ G+DVL FIDNI+R
Sbjct: 121 ESGVINL-KDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFR 179
Query: 253 YTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKKGSITSIQAVYVPADDLTDP 312
+T AG+EVSALLGR+PSAVGYQPTLA +MG +QERI +TKKGSITS+QA+YVPADDLTDP
Sbjct: 180 FTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDP 239
Query: 313 SPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSR 348
+PATTFAHLD+T VLSR IA LGIYPA+DPLDSTSR
Sbjct: 240 APATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSR 275
>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1
ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
Length = 285
Score = 324 bits (833), Expect = e-110
Identities = 70/286 (24%), Positives = 124/286 (43%), Gaps = 18/286 (6%)
Query: 74 IMIPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVID 133
+ +PVG+ LGR+++ LG+ ID KG I +K + P S +E ++TGIK +D
Sbjct: 1 VDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVD 60
Query: 134 LICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSG-------LSVFTGVGERTREGN 186
+ P +G + + G GKT ++ I N + + G ++ +G++
Sbjct: 61 SLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVA 120
Query: 187 DFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFF 246
+ +A +V ++ + + +G ++ E FRD GK L
Sbjct: 121 QLVKRLTDADA-------MKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALII 173
Query: 247 IDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKK----GSITSIQAV 302
D++ + +A ++S LL R P Y + L ER A GS+T++ +
Sbjct: 174 YDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVI 233
Query: 303 YVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSR 348
A D++ P + D + L ++ GI PAI+ S SR
Sbjct: 234 ETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSR 279
>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1
ATP synthase {Spinach (Spinacia oleracea), chloroplast
[TaxId: 3562]}
Length = 276
Score = 284 bits (727), Expect = 3e-94
Identities = 74/277 (26%), Positives = 115/277 (41%), Gaps = 12/277 (4%)
Query: 76 IPVGKATLGRIINVLGDPIDEKGNISNKYVSSIHRTPPSYEELSSSQELLETGIKVIDLI 135
IPV +A LGR+IN L PID +G I+ I P S E L+TG+ ID +
Sbjct: 2 IPVSEAYLGRVINALAKPIDGRGEITASESRLIESPAPGIMSRRSVYEPLQTGLIAIDAM 61
Query: 136 CPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTREGNDFYHEMIEA 195
P +G + + G GKT + I N + + + V+ +G++ E
Sbjct: 62 IPVGRGQRELIIGDRQTGKTAVATDTILN-QQGQNVICVYVAIGQKASSVAQVVTNFQER 120
Query: 196 KVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDVLFFIDNIYRYTL 255
+ +V + P+ + TG +AE F + L D++ +
Sbjct: 121 GAME-------YTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQ 173
Query: 256 AGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTKK----GSITSIQAVYVPADDLTD 311
A ++S LL R P Y + L ER A GS+T++ V A D++
Sbjct: 174 AYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSLLGEGSMTALPIVETQAGDVSA 233
Query: 312 PSPATTFAHLDSTVVLSRDIASLGIYPAIDPLDSTSR 348
P + D + LS D+ + GI PAI+ S SR
Sbjct: 234 YIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSR 270
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho,
ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 215 bits (549), Expect = 2e-67
Identities = 53/288 (18%), Positives = 107/288 (37%), Gaps = 19/288 (6%)
Query: 108 IHRTPPSYEELSSSQELLETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELINNIAK 167
+H E + + +V+DL P +G + + GKT+ + + +IA
Sbjct: 11 LHANSRLRMERGNGSTE-DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY 69
Query: 168 AHSGLSVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVAL 227
H + + + E +++ +VV +EP+ ++VA
Sbjct: 70 NHPDCVLMVLLIDERPEEVTEMQRLVKGEVV-------------ASTFDEPASRHVQVAE 116
Query: 228 TGLTIAEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQER 287
+ A+ + KDV+ +D+I R A V G++ + L +
Sbjct: 117 MVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAA 176
Query: 288 IASTKKGSITSIQAVYVPADDLTDPSPATTF-AHLDSTVVLSRDIASLGIYPAIDPLDST 346
+ GS+T I + D F + + LSR IA ++PAID S
Sbjct: 177 RNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSG 236
Query: 347 SRQLDPLIVGKKHYKIA---RLVQSTLQRYKELRDIISILGMDELSPE 391
+R + L+ ++ + R + + + +I+ L M + + +
Sbjct: 237 TR-KEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDD 283
>d2jdid1 a.69.1.1 (D:358-475) F1 ATP synthase beta subunit, domain 3
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 118
Score = 193 bits (493), Expect = 2e-61
Identities = 78/118 (66%), Positives = 94/118 (79%)
Query: 350 LDPLIVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVARARKMQRFLSQP 409
+DP IVG +HY +AR VQ LQ YK L+DII+ILGMDELS EDKL V+RARK+QRFLSQP
Sbjct: 1 MDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQP 60
Query: 410 FHVAEVFTGKSGKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAIKKSKKLMK 467
F VAEVFTG GK V LK+T+ GF I +GE D++PEQAFYMVG I+EA+ K+ KL +
Sbjct: 61 FQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLAE 118
>d1skye1 a.69.1.1 (E:357-470) F1 ATP synthase beta subunit, domain 3
{Bacillus sp., strain ps3 [TaxId: 1409]}
Length = 114
Score = 193 bits (492), Expect = 2e-61
Identities = 67/112 (59%), Positives = 90/112 (80%)
Query: 354 IVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVARARKMQRFLSQPFHVA 413
IVG++HY++AR VQ TL+RYKEL+DII+ILGMDELS EDKL+V RAR++Q FLSQ FHVA
Sbjct: 2 IVGEEHYQVARKVQQTLERYKELQDIIAILGMDELSDEDKLVVHRARRIQFFLSQNFHVA 61
Query: 414 EVFTGKSGKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAIKKSKKL 465
E FTG+ G YV +K+T+ GF I G+ D++PE F +VG I+E ++K+K +
Sbjct: 62 EQFTGQPGSYVPVKETVRGFKEILEGKYDHLPEDRFRLVGRIEEVVEKAKAM 113
>d1fx0b1 a.69.1.1 (B:378-485) F1 ATP synthase beta subunit, domain 3
{Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}
Length = 108
Score = 181 bits (462), Expect = 6e-57
Identities = 76/106 (71%), Positives = 92/106 (86%)
Query: 354 IVGKKHYKIARLVQSTLQRYKELRDIISILGMDELSPEDKLLVARARKMQRFLSQPFHVA 413
IVG++HY+IA+ V+ TLQRYKEL+DII+ILG+DELS ED+L VARARK++RFLSQPF VA
Sbjct: 2 IVGEEHYEIAQRVKETLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVA 61
Query: 414 EVFTGKSGKYVSLKDTLNGFHLISSGELDNIPEQAFYMVGTIDEAI 459
EVFTG GKYV L +T+ GF LI SGELD++PEQAFY+VG IDEA
Sbjct: 62 EVFTGSPGKYVGLAETIRGFQLILSGELDSLPEQAFYLVGNIDEAT 107
>d1skye2 b.49.1.1 (E:1-82) F1 ATP synthase beta subunit, domain 1
{Bacillus sp., strain ps3 [TaxId: 1409]}
Length = 82
Score = 109 bits (275), Expect = 4e-30
Identities = 38/82 (46%), Positives = 53/82 (64%), Gaps = 9/82 (10%)
Query: 1 MSDGKIIQCIGSVVDVEFPHNMVPKIYNALKIENS---------ELTLEVQQQLGDGIVR 51
M+ G++IQ +G VVDV+F + +P IYNALKI++ +LTLEV LGD VR
Sbjct: 1 MTRGRVIQVMGPVVDVKFENGHLPAIYNALKIQHKARNENEVDIDLTLEVALHLGDDTVR 60
Query: 52 TIVLGTSEGLRRGTIVKNTGKP 73
TI + +++GL RG V +TG P
Sbjct: 61 TIAMASTDGLIRGMEVIDTGAP 82
>d2jdid2 b.49.1.1 (D:10-81) F1 ATP synthase beta subunit, domain 1
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 72
Score = 105 bits (264), Expect = 1e-28
Identities = 34/72 (47%), Positives = 47/72 (65%), Gaps = 3/72 (4%)
Query: 4 GKIIQCIGSVVDVEFPHNMVPKIYNALKIENSE--LTLEVQQQLGDGIVRTIVLGTSEGL 61
G+I+ IG+VVDV+F + P I NAL+++ E L LEV Q LG+ VRTI + +EGL
Sbjct: 2 GRIVAVIGAVVDVQFDEGL-PPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGL 60
Query: 62 RRGTIVKNTGKP 73
RG V ++G P
Sbjct: 61 VRGQKVLDSGAP 72
>d1fx0b2 b.49.1.1 (B:19-97) F1 ATP synthase beta subunit, domain 1
{Spinach (Spinacia oleracea), chloroplast [TaxId:
3562]}
Length = 79
Score = 103 bits (259), Expect = 7e-28
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 7/77 (9%)
Query: 4 GKIIQCIGSVVDVEFPHNMVPKIYNALKIENSE-------LTLEVQQQLGDGIVRTIVLG 56
G+I Q IG V++V FP +P IYNAL ++ + +T EVQQ LG+ VR + +
Sbjct: 3 GRIAQIIGPVLNVAFPPGKMPNIYNALIVKGRDTAGQPMNVTCEVQQLLGNNRVRAVAMS 62
Query: 57 TSEGLRRGTIVKNTGKP 73
++GL RG V +TG P
Sbjct: 63 ATDGLTRGMEVIDTGAP 79
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 32.7 bits (73), Expect = 0.072
Identities = 19/120 (15%), Positives = 37/120 (30%), Gaps = 6/120 (5%)
Query: 125 LETGIKVIDLICP--FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERT 182
+ T I+ D I G + G +G GKT+ ++ + N VF E
Sbjct: 8 MRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETP 67
Query: 183 REGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKD 242
++ + + +L K + +P G + + E +
Sbjct: 68 QD----IIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQK 123
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 31.4 bits (70), Expect = 0.16
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 120 SSQELLETGIKVIDLICP--FSKGGKVGLFGGAGVGKTVNMMELINNIAKAH 169
SS + +G+ +D +C F K + G G GKT+ + + N
Sbjct: 3 SSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANK 54
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 30.8 bits (68), Expect = 0.32
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 115 YEELSSSQE---LLETGIKVID-LICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAH 169
E SS+E LL +G I+ G + + G+G+GK+ + + A
Sbjct: 5 IREHLSSEESVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAM 63
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 30.0 bits (66), Expect = 0.49
Identities = 12/69 (17%), Positives = 19/69 (27%), Gaps = 1/69 (1%)
Query: 123 ELLETGIKVID-LICPFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGER 181
E +D ++ G L G GK++ ++L IA L V
Sbjct: 10 EAFAAAPPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGP 69
Query: 182 TREGNDFYH 190
Sbjct: 70 VIYLPAEDP 78
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 30.1 bits (66), Expect = 0.50
Identities = 11/63 (17%), Positives = 16/63 (25%), Gaps = 2/63 (3%)
Query: 125 LETGIKVIDLIC--PFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERT 182
L T +D + G G GKT M + N+ V +
Sbjct: 16 LSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGE 75
Query: 183 REG 185
Sbjct: 76 VAQ 78
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 30.1 bits (66), Expect = 0.52
Identities = 33/220 (15%), Positives = 53/220 (24%), Gaps = 17/220 (7%)
Query: 115 YEELSSSQELLETGIKVIDLIC--PFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGL 172
Y E + TG + D + FG GKT L +G
Sbjct: 9 YSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGG 68
Query: 173 SVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTI 232
+ E N F + + + + + ++ L
Sbjct: 69 YPGGKIIFIDTE-NTFRPDRLRD--IADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVA 125
Query: 233 AEGFRDEGKDVLFFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGYLQERIASTK 292
A+ + G L ID+I Q LA+ + LQ+
Sbjct: 126 AKFHEEAGIFKLLIIDSIMALFRVDFS------GRGELAERQQKLAQMLSRLQKISEEYN 179
Query: 293 KGSI------TSIQAVYVPADDLTDPSPATTFAHLDSTVV 326
A D P AH +T +
Sbjct: 180 VAVFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTRI 219
>d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755,
C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 148
Score = 29.1 bits (64), Expect = 0.73
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 6/41 (14%)
Query: 203 PEKSKVSMVYGQMNEPSGNRLRVALTGLTIAEGFRDEGKDV 243
P+K KV+++Y M G V + +++G
Sbjct: 1 PKKGKVTVIYDSM---YGFVENVM---KKAIDSLKEKGFTP 35
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 29.5 bits (65), Expect = 0.95
Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 3/59 (5%)
Query: 146 LFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGE---RTREGNDFYHEMIEAKVVNLD 201
+ G G GK+V + EL + + G+ + D + +
Sbjct: 55 VNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLSKFGRDKDIILNPYDQRTKGWS 113
>d2jdia2 b.49.1.1 (A:24-94) F1 ATP synthase alpha subunit, domain
1 {Cow (Bos taurus) [TaxId: 9913]}
Length = 71
Score = 27.0 bits (60), Expect = 1.2
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 45 LGDGIVRTIVLGTSEGLRRGTIVKNTGK 72
L V +V G + ++ G IVK TG
Sbjct: 43 LEPDNVGVVVFGNDKLIKEGDIVKRTGA 70
>d1fx0a2 b.49.1.1 (A:25-96) F1 ATP synthase alpha subunit, domain
1 {Spinach (Spinacia oleracea), chloroplast [TaxId:
3562]}
Length = 72
Score = 26.9 bits (60), Expect = 1.2
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 45 LGDGIVRTIVLGTSEGLRRGTIVKNTGK 72
L V +++G ++ G+ VK TG+
Sbjct: 43 LESNNVGVVLMGDGLMIQEGSSVKATGR 70
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 28.6 bits (62), Expect = 1.2
Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
Query: 125 LETGIKVIDLIC--PFSKGGKVGLFGGAGVGKTVNMMELINNIAKAH 169
+ TG K +D + G +FG GKT L
Sbjct: 5 ITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPI 51
>d1skyb2 b.49.1.1 (B:21-95) F1 ATP synthase alpha subunit, domain
1 {Bacillus sp., strain ps3 [TaxId: 1409]}
Length = 75
Score = 26.6 bits (59), Expect = 1.5
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 45 LGDGIVRTIVLGTSEGLRRGTIVKNTGK 72
L + V ++LG G++ G V+ TG+
Sbjct: 46 LEENNVGIVILGPYTGIKEGDEVRRTGR 73
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 28.5 bits (62), Expect = 1.6
Identities = 22/138 (15%), Positives = 41/138 (29%), Gaps = 2/138 (1%)
Query: 115 YEELSSSQELLETGIKVIDLIC--PFSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGL 172
Y + ++ + TG K +D + +FG G GKT L +
Sbjct: 8 YLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEG 67
Query: 173 SVFTGVGERTREGNDFYHEMIEAKVVNLDKPEKSKVSMVYGQMNEPSGNRLRVALTGLTI 232
+ V E + E P++ + + + L V I
Sbjct: 68 GLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKI 127
Query: 233 AEGFRDEGKDVLFFIDNI 250
E + L +D++
Sbjct: 128 KELLNTDRPVKLLIVDSL 145
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 28.1 bits (61), Expect = 2.1
Identities = 13/57 (22%), Positives = 17/57 (29%), Gaps = 2/57 (3%)
Query: 115 YEELSSSQELLETGIKVIDLICP--FSKGGKVGLFGGAGVGKTVNMMELINNIAKAH 169
+ S L TG K +D + G LFG GK+ L
Sbjct: 6 FHMRRSELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPL 62
>d1jfla1 c.78.2.1 (A:1-115) Aspartate racemase {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 115
Score = 27.2 bits (60), Expect = 2.1
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 143 KVGLFGGAGVGKTVNMMELINNIAKAHSG 171
+G+ GG G T + I A
Sbjct: 3 TIGILGGMGPLATAELFRRIVIKTPAKRD 31
>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase
RfbF {Salmonella typhimurium [TaxId: 90371]}
Length = 259
Score = 27.0 bits (58), Expect = 4.4
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 49 IVRTIVLGTSEGLRRGTIVKNTGKPIMIPV-GKATLGRIINVL 90
+ ++L G R KP M+ + GK L I+ +
Sbjct: 2 ASKAVILAGGLGTRLSEETIVKPKP-MVEIGGKPILWHIMKMY 43
>d1y08a_ d.3.1.12 (A:) IgG-specific endopeptidase IdeS (Sib38)
{Streptococcus pyogenes [TaxId: 1314]}
Length = 291
Score = 27.3 bits (60), Expect = 4.4
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 69 NTGKPIM--IPVGKATLGRIINVLGDPIDEKGNISNKYVS 106
GK + + +IN+ G D GN+ YV+
Sbjct: 196 TEGKALGLSHTYANVRINHVINLWGADFDSNGNLKAIYVT 235
>d2vv5a1 b.38.1.3 (A:113-179) Mechanosensitive channel protein
MscS (YggB), middle domain {Escherichia coli [TaxId:
562]}
Length = 67
Score = 25.1 bits (55), Expect = 4.9
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 37 LTLEVQQQLGDGIVRTIVLGTSE--GLRRGTIVKNTGKPIMIPVGKATLGRIIN 88
L + + G+ + V GT + T+ GK I+IP GK G IIN
Sbjct: 12 LVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIIN 65
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 26.2 bits (56), Expect = 7.8
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 10/47 (21%)
Query: 138 FSKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFTGVGERTRE 184
F+K V + GG GK+ L+N +A + T E RE
Sbjct: 6 FAK--TVAILGGESSGKS----VLVNKLAAVFNT----TSAWEYGRE 42
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.136 0.378
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,701,258
Number of extensions: 81814
Number of successful extensions: 368
Number of sequences better than 10.0: 1
Number of HSP's gapped: 355
Number of HSP's successfully gapped: 33
Length of query: 467
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 378
Effective length of database: 1,185,626
Effective search space: 448166628
Effective search space used: 448166628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.1 bits)