BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2898
(222 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W66|A Chain A, Structure Of A Lipoate-protein Ligase B From Mycobacterium
Tuberculosis
Length = 232
Score = 96.7 bits (239), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 102/208 (49%), Gaps = 14/208 (6%)
Query: 5 SISSTYSNLQIIQRGLEPYIVSFNAMLLFNSNRTNYTIDQLWFVEHFPVYTLGLKSNFSH 64
SI S S + + Q G Y ++ R D L +EH VYT G ++ +H
Sbjct: 6 SIRSKLSAIDVRQLGTVDYRTAWQLQRELADARVAGGADTLLLLEHPAVYTAGRRTE-TH 64
Query: 65 ILISKKLNNIPIIRTDRGGEVTYHGPGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAV 124
+ ++ P++ TDRGG++T+HGPGQ + Y +I L ++ Y+++L EE++
Sbjct: 65 ---ERPIDGTPVVDTDRGGKITWHGPGQLVGYPIIGLAEPL--DVVNYVRRL----EESL 115
Query: 125 ILTMSQYNINCKRKKNAPGVYIANGPFSGAKIASIGLKISAKGYVYHGVSINVSMDLEPF 184
I + ++ R GV++ P K+A+IG+++S + HG ++N DL F
Sbjct: 116 IQVCADLGLHAGRVDGRSGVWLPGRPAR--KVAAIGVRVS-RATTLHGFALNCDCDLAAF 172
Query: 185 NNINPCGYPGLVIVDMK-KLGINTTISK 211
I PCG + + +LG T+ +
Sbjct: 173 TAIVPCGISDAAVTSLSAELGRTVTVDE 200
>pdb|2QHT|A Chain A, Structural Basis Of Octanoic Acid Recognition By
Lipoate-Protein Ligase B
pdb|2QHU|A Chain A, Structural Basis Of Octanoic Acid Recognition By
Lipoate-Protein Ligase B
pdb|2QHV|A Chain A, Structural Basis Of Octanoic Acid Recognition By
Lipoate-protein Ligase B
Length = 210
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 83/162 (51%), Gaps = 17/162 (10%)
Query: 45 LWFVEHFPVYTLGLKSNFSHILISK---KLNNIPIIRTDRGGEVTYHGPGQAIIYLLIDL 101
L +EH V TLG K+ ++L + + N + +RGG+VTYHGPGQ + Y + +
Sbjct: 36 LLLLEHPRVITLGRKATGENLLFPESWYRENGFELYWVERGGDVTYHGPGQLVGYPIFPV 95
Query: 102 RRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANGPFSGAKIASIGL 161
R +++ + IEEA++ + Y I+ GV++ K+ +IG+
Sbjct: 96 GRE--------VRRFLRQIEEAIVRVAAGYGISAYPTPGYAGVWVGE-----DKLCAIGV 142
Query: 162 KISAKGYVYHGVSINVSMDLEPFNNINPCGYPGLVIVDMKKL 203
+ +G +HG ++NV+ DL F I PCG G + ++KL
Sbjct: 143 AVK-EGVSFHGFALNVNTDLNDFTVIVPCGLKGKGVTSLEKL 183
>pdb|2QHS|A Chain A, Structural Basis Of Octanoic Acid Recognition By
Lipoate-protein Ligase B
Length = 237
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 83/162 (51%), Gaps = 17/162 (10%)
Query: 45 LWFVEHFPVYTLGLKSNFSHILISK---KLNNIPIIRTDRGGEVTYHGPGQAIIYLLIDL 101
L +EH V TLG K+ ++L + + N + +RGG+VTYHGPGQ + Y + +
Sbjct: 56 LLLLEHPRVITLGRKATGENLLFPESWYRENGFELYWVERGGDVTYHGPGQLVGYPIFPV 115
Query: 102 RRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANGPFSGAKIASIGL 161
R +++ + IEEA++ + Y I+ GV++ K+ +IG+
Sbjct: 116 GRE--------VRRFLRQIEEAIVRVAAGYGISAYPTPGYAGVWVGE-----DKLCAIGV 162
Query: 162 KISAKGYVYHGVSINVSMDLEPFNNINPCGYPGLVIVDMKKL 203
+ +G +HG ++NV+ DL F I PCG G + ++KL
Sbjct: 163 AVK-EGVSFHGFALNVNTDLNDFTVIVPCGLKGKGVTSLEKL 203
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 30.0 bits (66), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 80 DRGGEVTYHGPGQAIIYLLIDLRRRYSDNIKIYIKKL--VENIEEAVILTMSQY 131
DR + T+ GPG LLI L ++D++ Y L V+ ++ V+L++ ++
Sbjct: 241 DRSHQGTWEGPGDGRPVLLIALGSAFTDHLDFYRTCLSAVDGLDWHVVLSVGRF 294
>pdb|1TEE|A Chain A, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|B Chain B, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|C Chain C, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|D Chain D, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
Length = 393
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 109 IKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANG--PFSGAKIASIGLKIS 164
++ +L++N E+ ++L ++ I C+ +N PG YI +G P + GL+IS
Sbjct: 249 VRSSFSQLLDNTEDGIVLGVNHNGITCELSENLPG-YIFSGVAPVVTEMLWDNGLQIS 305
>pdb|1TED|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|C Chain C, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|D Chain D, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
Length = 393
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 109 IKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANG--PFSGAKIASIGLKIS 164
++ +L++N E+ ++L ++ I C+ +N PG YI +G P + GL+IS
Sbjct: 249 VRSSFSQLLDNTEDGIVLGVNHNGITCELSENLPG-YIFSGVAPVVTEMLWDNGLQIS 305
>pdb|4INA|A Chain A, Crystal Structure Of The Q7mss8_wolsu Protein From
Wolinella Succinogenes. Northeast Structural Genomics
Consortium Target Wsr35
pdb|4INA|B Chain B, Crystal Structure Of The Q7mss8_wolsu Protein From
Wolinella Succinogenes. Northeast Structural Genomics
Consortium Target Wsr35
Length = 405
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 65/150 (43%), Gaps = 29/150 (19%)
Query: 63 SHILISKKLNNIPIIRTDRGGEVTYHG----PGQAIIYLLID-----LRRRYSDNIKIYI 113
S++ + L N+ +R D E+ +G P Q + LL D R + NI YI
Sbjct: 256 SYLTHXRCLENVGXLRID---EIEVNGCKVVPIQVLKALLPDPASLASRTKGKTNIGCYI 312
Query: 114 KKLVENIEEAVILTMSQYNI----NCKRKKNAPGVYIANG-PFSGAKIASIGLKISAKG- 167
K I+E T+ YN+ +C R+ NA + G P A IG K+ +G
Sbjct: 313 K----GIKEGKARTIYIYNVCDHESCYREVNAQAISYTTGVP------AXIGAKLXLEGK 362
Query: 168 YVYHGVSINVSMDLEPF-NNINPCGYPGLV 196
+ GV +D +PF + +N G P V
Sbjct: 363 WSGKGVFNXEELDPDPFXDELNKQGLPWEV 392
>pdb|4F9I|A Chain A, Crystal Structure Of Proline Utilization A (Puta) From
Geobacter Sulfurreducens Pca
pdb|4F9I|B Chain B, Crystal Structure Of Proline Utilization A (Puta) From
Geobacter Sulfurreducens Pca
Length = 1026
Score = 28.5 bits (62), Expect = 2.8, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 139 KNAPGVYIANGPFSGAKIASIGLKISAKGYVYH 171
+N G + PF GA+++ +G K Y+ H
Sbjct: 967 RNNTGALVERQPFGGARMSGVGTKAGGPDYLLH 999
>pdb|1YRO|B Chain B, Crystal Structure Of Beta14,-Galactosyltransferase Mutant
Arg228lys In Complex With Alpha-Lactalbumin In The
Presence Of Udp-Galactose And Mn
pdb|1YRO|D Chain D, Crystal Structure Of Beta14,-Galactosyltransferase Mutant
Arg228lys In Complex With Alpha-Lactalbumin In The
Presence Of Udp-Galactose And Mn
Length = 286
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 18/102 (17%)
Query: 136 KRKKNAPGVYIANGP----FSGAKIASIGLKISAKGYVYHGVSINVSMDLEPFNNINP-- 189
+R++ G+Y+ N F+ AK+ ++G K + K Y Y+ + +DL P N+ N
Sbjct: 91 QRQQLDYGIYVINQAGESMFNKAKLLNVGFKEALKDYDYNCFVFS-DVDLIPMNDHNTYR 149
Query: 190 C-GYPGLVIVDMKKLGIN----------TTISKVQHLFIKNF 220
C P + V M K G + + +SK Q L I F
Sbjct: 150 CFSQPRHISVAMDKFGFSLPYVQYFGGVSALSKQQFLSINGF 191
>pdb|1FGX|A Chain A, Crystal Structure Of The Bovine Beta 1,4
Galactosyltransferase (B4galt1) Catalytic Domain
Complexed With Ump
pdb|1FGX|B Chain B, Crystal Structure Of The Bovine Beta 1,4
Galactosyltransferase (B4galt1) Catalytic Domain
Complexed With Ump
Length = 288
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 18/102 (17%)
Query: 136 KRKKNAPGVYIANGP----FSGAKIASIGLKISAKGYVYHGVSINVSMDLEPFNNINP-- 189
+R++ G+Y+ N F+ AK+ ++G K + K Y Y+ + +DL P N+ N
Sbjct: 93 QRQQLDYGIYVINQAGESMFNRAKLLNVGFKEALKDYDYNCFVFS-DVDLIPMNDHNTYR 151
Query: 190 C-GYPGLVIVDMKKLGIN----------TTISKVQHLFIKNF 220
C P + V M K G + + +SK Q L I F
Sbjct: 152 CFSQPRHISVAMDKFGFSLPYVQYFGGVSALSKQQFLSINGF 193
>pdb|2FYD|B Chain B, Catalytic Domain Of Bovine Beta 1, 4-Galactosyltransferase
In Complex With Alpha-Lactalbumin, Glucose, Mn, And
Udp-N- Acetylgalactosamine
pdb|2FYD|D Chain D, Catalytic Domain Of Bovine Beta 1, 4-Galactosyltransferase
In Complex With Alpha-Lactalbumin, Glucose, Mn, And
Udp-N- Acetylgalactosamine
Length = 286
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 18/102 (17%)
Query: 136 KRKKNAPGVYIANGP----FSGAKIASIGLKISAKGYVYHGVSINVSMDLEPFNNINP-- 189
+R++ G+Y+ N F+ AK+ ++G K + K Y Y+ + +DL P N+ N
Sbjct: 91 QRQQLDYGIYVINQAGESMFNRAKLLNVGFKEALKDYDYNCFVFS-DVDLIPMNDHNTYR 149
Query: 190 C-GYPGLVIVDMKKLGIN----------TTISKVQHLFIKNF 220
C P + V M K G + + +SK Q L I F
Sbjct: 150 CFSQPRHISVAMDKFGFSLPYVQYFGGVSALSKQQFLSINGF 191
>pdb|1FR8|A Chain A, Crystal Structure Of The Bovine Beta 1,4
Galactosyltransferase (B4galt1) Catalytic Domain
Complexed With Uridine Diphosphogalactose
pdb|1FR8|B Chain B, Crystal Structure Of The Bovine Beta 1,4
Galactosyltransferase (B4galt1) Catalytic Domain
Complexed With Uridine Diphosphogalactose
Length = 288
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 18/102 (17%)
Query: 136 KRKKNAPGVYIANGP----FSGAKIASIGLKISAKGYVYHGVSINVSMDLEPFNNINP-- 189
+R++ G+Y+ N F+ AK+ ++G K + K Y Y+ + +DL P N+ N
Sbjct: 93 QRQQLDYGIYVINQAGESMFNRAKLLNVGFKEALKDYDYNCFVFS-DVDLIPMNDHNTYR 151
Query: 190 C-GYPGLVIVDMKKLGIN----------TTISKVQHLFIKNF 220
C P + V M K G + + +SK Q L I F
Sbjct: 152 CFSQPRHISVAMDKFGFSLPYVQYFGGVSALSKQQFLSINGF 193
>pdb|1NMM|B Chain B, Beta-1,4-Galactosyltransferase Mutant Cys342thr Complex
With Alpha- Lactalbumin And Glcnac
pdb|1NMM|D Chain D, Beta-1,4-Galactosyltransferase Mutant Cys342thr Complex
With Alpha- Lactalbumin And Glcnac
pdb|1O0R|A Chain A, Crystal Structure Of The Catalytic Domain Of Bovine
Beta1,4- Galactosyltransferase Complex With
Udp-Galactose
pdb|1O0R|B Chain B, Crystal Structure Of The Catalytic Domain Of Bovine
Beta1,4- Galactosyltransferase Complex With
Udp-Galactose
Length = 286
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 18/102 (17%)
Query: 136 KRKKNAPGVYIANGP----FSGAKIASIGLKISAKGYVYHGVSINVSMDLEPFNNINP-- 189
+R++ G+Y+ N F+ AK+ ++G K + K Y Y+ + +DL P N+ N
Sbjct: 91 QRQQLDYGIYVINQAGESMFNRAKLLNVGFKEALKDYDYNCFVFS-DVDLIPMNDHNTYR 149
Query: 190 C-GYPGLVIVDMKKLGIN----------TTISKVQHLFIKNF 220
C P + V M K G + + +SK Q L I F
Sbjct: 150 CFSQPRHISVAMDKFGFSLPYVQYFGGVSALSKQQFLSINGF 191
>pdb|1NF5|B Chain B, Crystal Structure Of Lactose Synthase, Complex With
Glucose
pdb|1NF5|D Chain D, Crystal Structure Of Lactose Synthase, Complex With
Glucose
pdb|1NKH|B Chain B, Crystal Structure Of Lactose Synthase Complex With Udp And
Manganese
pdb|1NKH|D Chain D, Crystal Structure Of Lactose Synthase Complex With Udp And
Manganese
pdb|1NQI|B Chain B, Crystal Structure Of Lactose Synthase, A 1:1 Complex
Between Beta1,4- Galactosyltransferase And
Alpha-Lactalbumin In The Presence Of Glcnac
pdb|1NQI|D Chain D, Crystal Structure Of Lactose Synthase, A 1:1 Complex
Between Beta1,4- Galactosyltransferase And
Alpha-Lactalbumin In The Presence Of Glcnac
pdb|1NWG|B Chain B, Beta-1,4-Galactosyltransferase Complex With Alpha-
Lactalbumin And N-Butanoyl-Glucoamine
pdb|1NWG|D Chain D, Beta-1,4-Galactosyltransferase Complex With Alpha-
Lactalbumin And N-Butanoyl-Glucoamine
pdb|1O23|B Chain B, Crystal Structure Of Lactose Synthase In The Presence Of
Udp-glucose
pdb|1O23|D Chain D, Crystal Structure Of Lactose Synthase In The Presence Of
Udp-glucose
pdb|1OQM|B Chain B, A 1:1 Complex Between Alpha-Lactalbumin And Beta1,4-
Galactosyltransferase In The Presence Of Udp-N-Acetyl-
Galactosamine
pdb|1OQM|D Chain D, A 1:1 Complex Between Alpha-Lactalbumin And Beta1,4-
Galactosyltransferase In The Presence Of Udp-N-Acetyl-
Galactosamine
Length = 286
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 18/102 (17%)
Query: 136 KRKKNAPGVYIANGP----FSGAKIASIGLKISAKGYVYHGVSINVSMDLEPFNNINP-- 189
+R++ G+Y+ N F+ AK+ ++G K + K Y Y+ + +DL P N+ N
Sbjct: 91 QRQQLDYGIYVINQAGESMFNRAKLLNVGFKEALKDYDYNCFVFS-DVDLIPMNDHNTYR 149
Query: 190 C-GYPGLVIVDMKKLGIN----------TTISKVQHLFIKNF 220
C P + V M K G + + +SK Q L I F
Sbjct: 150 CFSQPRHISVAMDKFGFSLPYVQYFGGVSALSKQQFLSINGF 191
>pdb|1PZY|B Chain B, W314a-Beta1,4-Galactosyltransferase-I Complexed With
Alpha-Lactalbumin In The Presence Of
N-Acetylglucosamine, Udp And Manganese
pdb|1PZY|D Chain D, W314a-Beta1,4-Galactosyltransferase-I Complexed With
Alpha-Lactalbumin In The Presence Of
N-Acetylglucosamine, Udp And Manganese
pdb|1PZT|A Chain A, Crystal Structure Of W314a-beta-1,4-galactosyltransferase
(b4gal-t1) Catalytic Domain Without Substrate
Length = 286
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 18/102 (17%)
Query: 136 KRKKNAPGVYIANGP----FSGAKIASIGLKISAKGYVYHGVSINVSMDLEPFNNINP-- 189
+R++ G+Y+ N F+ AK+ ++G K + K Y Y+ + +DL P N+ N
Sbjct: 91 QRQQLDYGIYVINQAGESMFNRAKLLNVGFKEALKDYDYNCFVFS-DVDLIPMNDHNTYR 149
Query: 190 C-GYPGLVIVDMKKLGIN----------TTISKVQHLFIKNF 220
C P + V M K G + + +SK Q L I F
Sbjct: 150 CFSQPRHISVAMDKFGFSLPYVQYFGGVSALSKQQFLSINGF 191
>pdb|1TVY|A Chain A, Beta-1,4-Galactosyltransferase Mutant Met344his
(M344h-Gal- T1) Complex With Udp-Galactose And Manganese
pdb|1TVY|B Chain B, Beta-1,4-Galactosyltransferase Mutant Met344his
(M344h-Gal- T1) Complex With Udp-Galactose And Manganese
pdb|1TW1|A Chain A, Beta-1,4-galactosyltransferase Mutant Met344his
(m344h-gal- T1) Complex With Udp-galactose And Magnesium
pdb|1TW1|B Chain B, Beta-1,4-galactosyltransferase Mutant Met344his
(m344h-gal- T1) Complex With Udp-galactose And Magnesium
pdb|1TW5|A Chain A, Beta1,4-Galactosyltransferase Mutant M344h-Gal-T1 In
Complex With Chitobiose
pdb|1TW5|B Chain B, Beta1,4-Galactosyltransferase Mutant M344h-Gal-T1 In
Complex With Chitobiose
pdb|2FYC|B Chain B, Crystal Structure Of The Catalytic Domain Of Bovine
Beta1,4- Galactosyltransferase-I In Complex With
Alpha-Lactalbumin, Ca And Udp-Galactose
pdb|2FYC|D Chain D, Crystal Structure Of The Catalytic Domain Of Bovine
Beta1,4- Galactosyltransferase-I In Complex With
Alpha-Lactalbumin, Ca And Udp-Galactose
Length = 286
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 18/102 (17%)
Query: 136 KRKKNAPGVYIANGP----FSGAKIASIGLKISAKGYVYHGVSINVSMDLEPFNNINP-- 189
+R++ G+Y+ N F+ AK+ ++G K + K Y Y+ + +DL P N+ N
Sbjct: 91 QRQQLDYGIYVINQAGESMFNRAKLLNVGFKEALKDYDYNCFVFS-DVDLIPMNDHNTYR 149
Query: 190 C-GYPGLVIVDMKKLGIN----------TTISKVQHLFIKNF 220
C P + V M K G + + +SK Q L I F
Sbjct: 150 CFSQPRHISVAMDKFGFSLPYVQYFGGVSALSKQQFLSINGF 191
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.141 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,449,156
Number of Sequences: 62578
Number of extensions: 261284
Number of successful extensions: 562
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 548
Number of HSP's gapped (non-prelim): 20
length of query: 222
length of database: 14,973,337
effective HSP length: 95
effective length of query: 127
effective length of database: 9,028,427
effective search space: 1146610229
effective search space used: 1146610229
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)