Query psy2898
Match_columns 222
No_of_seqs 144 out of 1047
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 20:24:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2898.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2898hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14342 lipoate-protein ligas 100.0 5.2E-73 1.1E-77 484.2 19.9 197 11-221 4-200 (213)
2 COG0321 LipB Lipoate-protein l 100.0 3.6E-73 7.9E-78 481.9 18.5 198 10-221 8-207 (221)
3 PRK14343 lipoate-protein ligas 100.0 1.5E-72 3.3E-77 486.4 21.1 204 10-221 12-215 (235)
4 PRK14346 lipoate-protein ligas 100.0 2.4E-72 5.2E-77 483.4 20.8 201 12-221 2-225 (230)
5 PRK14341 lipoate-protein ligas 100.0 2.5E-72 5.4E-77 480.3 20.6 202 11-221 3-208 (213)
6 PRK14344 lipoate-protein ligas 100.0 1.3E-71 2.7E-76 477.7 20.8 199 12-221 18-218 (223)
7 PRK14347 lipoate-protein ligas 100.0 1.5E-71 3.2E-76 473.6 20.9 202 13-221 3-205 (209)
8 PRK14348 lipoate-protein ligas 100.0 1E-71 2.3E-76 478.5 20.0 203 13-221 3-215 (221)
9 PRK14349 lipoate-protein ligas 100.0 2.9E-71 6.2E-76 474.0 20.3 198 15-221 2-201 (220)
10 PRK14345 lipoate-protein ligas 100.0 4.1E-71 8.9E-76 478.7 20.5 201 10-221 9-212 (234)
11 TIGR00214 lipB lipoate-protein 100.0 3E-66 6.5E-71 434.1 16.8 174 37-221 7-180 (184)
12 KOG0325|consensus 100.0 4E-50 8.6E-55 339.5 16.5 194 12-220 6-208 (226)
13 TIGR00545 lipoyltrans lipoyltr 99.8 5.2E-18 1.1E-22 153.9 17.4 185 22-221 10-207 (324)
14 PRK03822 lplA lipoate-protein 99.8 6.1E-18 1.3E-22 154.2 16.7 195 12-221 3-209 (338)
15 PRK14061 unknown domain/lipoat 99.7 2.3E-16 5E-21 151.4 17.5 196 11-221 226-433 (562)
16 COG0095 LplA Lipoate-protein l 99.7 9.5E-16 2.1E-20 134.2 16.3 195 14-221 3-211 (248)
17 PRK08330 biotin--protein ligas 99.5 1.5E-13 3.2E-18 119.3 12.0 122 80-221 41-163 (236)
18 PF03099 BPL_LplA_LipB: Biotin 99.5 4.5E-13 9.7E-18 103.8 9.4 117 56-180 1-125 (125)
19 KOG3159|consensus 99.0 7.2E-09 1.6E-13 92.6 12.5 175 10-201 8-189 (336)
20 PRK05935 biotin--protein ligas 98.5 1.9E-06 4.1E-11 73.0 12.1 125 80-221 43-172 (190)
21 COG0340 BirA Biotin-(acetyl-Co 98.3 6.1E-06 1.3E-10 72.2 9.5 125 79-220 34-163 (238)
22 TIGR00121 birA_ligase birA, bi 98.2 1.9E-05 4.2E-10 68.5 10.9 123 80-220 39-166 (237)
23 PRK11886 bifunctional biotin-- 98.0 7.8E-05 1.7E-09 67.3 11.4 124 80-220 116-245 (319)
24 PTZ00276 biotin/lipoate protei 97.9 9.2E-05 2E-09 64.9 10.4 123 80-220 46-175 (245)
25 PTZ00275 biotin-acetyl-CoA-car 97.9 0.00014 2.9E-09 65.3 11.4 122 82-220 71-210 (285)
26 PRK08477 biotin--protein ligas 97.7 0.00054 1.2E-08 59.0 11.8 113 80-220 41-155 (211)
27 PRK06955 biotin--protein ligas 97.6 0.0012 2.6E-08 59.5 11.8 130 79-220 77-222 (300)
28 PRK13325 bifunctional biotin-- 97.1 0.0051 1.1E-07 60.5 11.2 122 79-220 122-251 (592)
29 KOG0325|consensus 93.9 0.051 1.1E-06 47.1 3.0 31 73-104 143-173 (226)
30 PF04017 DUF366: Domain of unk 90.4 1.4 3E-05 37.2 7.3 80 120-219 87-166 (183)
31 COG2029 Uncharacterized conser 87.2 3.6 7.7E-05 34.5 7.6 81 120-220 90-171 (189)
32 KOG1536|consensus 79.2 13 0.00028 36.7 8.9 98 74-180 420-526 (649)
33 KOG2414|consensus 59.4 44 0.00096 32.0 7.6 117 49-168 281-459 (488)
34 PF13823 ADH_N_assoc: Alcohol 57.3 5.6 0.00012 22.5 0.9 11 85-95 4-14 (23)
35 PHA03222 single-stranded bindi 30.9 1.2E+02 0.0026 28.0 5.5 107 10-146 218-324 (337)
36 COG3818 Predicted acetyltransf 28.0 25 0.00054 28.7 0.6 17 40-56 70-86 (167)
37 COG3052 CitD Citrate lyase, ga 27.8 69 0.0015 24.3 2.9 23 114-136 39-61 (98)
38 PF03396 Pox_RNA_pol_35: Poxvi 27.4 1.1E+02 0.0023 27.7 4.4 60 73-144 179-238 (292)
39 KOG0109|consensus 27.1 60 0.0013 29.8 2.9 50 126-181 21-72 (346)
40 PF09322 DUF1979: Domain of un 23.7 59 0.0013 22.2 1.7 11 86-96 9-19 (58)
41 PF06378 DUF1071: Protein of u 22.2 4.6E+02 0.01 21.8 8.3 48 84-133 74-121 (164)
42 PRK00407 hypothetical protein; 21.7 67 0.0014 25.7 2.0 17 85-101 117-139 (139)
43 PF11281 DUF3083: Protein of u 21.6 2E+02 0.0042 26.4 5.1 42 95-138 262-303 (316)
44 PRK05761 DNA polymerase I; Rev 21.6 1.8E+02 0.0039 29.9 5.5 47 89-135 721-772 (787)
45 PF06738 DUF1212: Protein of u 21.1 1.2E+02 0.0027 24.8 3.5 31 117-147 12-43 (193)
46 TIGR01608 citD citrate lyase a 21.0 1.2E+02 0.0026 23.0 3.0 25 112-136 37-61 (92)
No 1
>PRK14342 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=5.2e-73 Score=484.24 Aligned_cols=197 Identities=45% Similarity=0.854 Sum_probs=188.7
Q ss_pred ceeEEEECCccchHHHHHHHHHHHHhhcCCCCCeEEEEecCCeeeeccCCCcccccccccCCCcCEEEeCcCCCceeeCC
Q psy2898 11 SNLQIIQRGLEPYIVSFNAMLLFNSNRTNYTIDQLWFVEHFPVYTLGLKSNFSHILISKKLNNIPIIRTDRGGEVTYHGP 90 (222)
Q Consensus 11 ~~~~~~~lG~~~Y~~a~~~q~~~~~~~~~~~~d~lll~EH~Pv~T~Gr~~~~~~ll~~~~~~gi~v~~~~RGG~iTyHgP 90 (222)
+.+.+.++|+++|++||++|+++++++.+..+|+|||||||||||+||++++++++.+. ++||++++|||++|||||
T Consensus 4 ~~~~~~~lg~~~Y~~a~~~Q~~l~~~~~~~~~d~llllEH~pVyT~Gr~~~~~~ll~~~---~~~v~~~~RGG~iTyHGP 80 (213)
T PRK14342 4 NKLIVRQLGLQPYEPVWQAMQEFTDTRDEETPDEIWLVEHPPVFTQGQAGKPEHILNPG---DIPVVQSDRGGQVTYHGP 80 (213)
T ss_pred CeEEEEeCCCcCHHHHHHHHHHHHHHHhCCCCCEEEEEcCCCCccCCCCCChhhccCCC---CCcEEEecCCCceEEECC
Confidence 45789999999999999999999988766678999999999999999999999998766 899999999999999999
Q ss_pred CCeEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhcCCcceecCCCCcEEEecCCCCCCeEeecceeEeeCcEEE
Q psy2898 91 GQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANGPFSGAKIASIGLKISAKGYVY 170 (222)
Q Consensus 91 GQLv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~~~~~~KIasiGv~i~~~~vt~ 170 (222)
||||+|||+||+++ +.++++|++.||+++|++|++|||++.+.++.+|||+ +++||||||++++ +|||+
T Consensus 81 GQLV~YpIl~L~~~-----~~~~~~yv~~lE~~vi~~l~~~gi~~~~~~~~~GVWv-----~~~KIaaIGv~v~-r~vT~ 149 (213)
T PRK14342 81 GQLVMYVLLDLKRL-----KLGVRQLVTAIEQTVINTLAEYGIEAHAKPDAPGVYV-----DGKKIASLGLRIR-RGCSF 149 (213)
T ss_pred CeEEEEEEEEcccc-----CCCHHHHHHHHHHHHHHHHHHcCCceeecCCCCcCcc-----cCCEEEEEEEeEe-cceee
Confidence 99999999999988 8899999999999999999999999999999999999 8899999999999 99999
Q ss_pred eceeeeecCCCCcCCcccCCCCCCCceeecccCCCCCCHHHHHHHHhcccc
Q psy2898 171 HGVSINVSMDLEPFNNINPCGYPGLVIVDMKKLGINTTISKVQHLFIKNFF 221 (222)
Q Consensus 171 HG~alNv~~dL~~f~~I~pCGl~~~~vTSL~~lg~~~~~~~v~~~l~~~f~ 221 (222)
||||||||+||++|+.|+|||++|++||||++++.++++++|++.++++|+
T Consensus 150 HG~AlNv~~dL~~F~~IvPCGl~~~~vTSl~~~~~~~~~~~v~~~~~~~f~ 200 (213)
T PRK14342 150 HGLALNVNMDLSPFLRINPCGYAGLEMTQLSDLGGPATVDEVAPRLLAELL 200 (213)
T ss_pred cceeEecCCCchhhCcEecCCCCCCcEeeHHHhCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999885
No 2
>COG0321 LipB Lipoate-protein ligase B [Coenzyme metabolism]
Probab=100.00 E-value=3.6e-73 Score=481.87 Aligned_cols=198 Identities=40% Similarity=0.801 Sum_probs=190.0
Q ss_pred CceeEEEECCccchHHHHHHHHHHHHhh-cCCCCCeEEEEecCCeeeeccCCCcccccccccCCCcCEEEeCcCCCceee
Q psy2898 10 YSNLQIIQRGLEPYIVSFNAMLLFNSNR-TNYTIDQLWFVEHFPVYTLGLKSNFSHILISKKLNNIPIIRTDRGGEVTYH 88 (222)
Q Consensus 10 ~~~~~~~~lG~~~Y~~a~~~q~~~~~~~-~~~~~d~lll~EH~Pv~T~Gr~~~~~~ll~~~~~~gi~v~~~~RGG~iTyH 88 (222)
...+.++.+|+++|.++|+.|+++.+++ ++..+|++|++|||||||.|++++.++++.+. ++||++++|||++|||
T Consensus 8 ~~~~~~~~~Gl~~Y~~a~~~m~~~~~~r~~~~~~d~i~lvEHppVyT~G~~~~~e~l~~~~---~ipVv~~~RGGqvTyH 84 (221)
T COG0321 8 PKIILVRELGLVDYQEAWQLMETFTDARADGGTPDEIWLVEHPPVYTAGQAGKAEHLLMPD---DIPVVQTDRGGQVTYH 84 (221)
T ss_pred ccchhhhhcCcccHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCeeecCccCCHhhcccCC---CCCEEEecCCceeEEe
Confidence 4468889999999999999999999997 66679999999999999999999999999877 8999999999999999
Q ss_pred CCCCeEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhcCCcceecCCCCcEEEecCCCC-CCeEeecceeEeeCc
Q psy2898 89 GPGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANGPFS-GAKIASIGLKISAKG 167 (222)
Q Consensus 89 gPGQLv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~~~~-~~KIasiGv~i~~~~ 167 (222)
||||+|+|||+||+++ +.++|+||++||+++|++|++|||+++++++++|||| + ++||||||++++ ||
T Consensus 85 GPGQ~V~Y~ildLkr~-----~~~vr~~V~~LEqavI~tLa~~~i~~~~~~~~~GVwV-----~~~~KIAaiGirir-r~ 153 (221)
T COG0321 85 GPGQLVAYPILDLKRP-----KLDVREYVRALEQAVINTLAEYGIEAERRPDRPGVWV-----EEERKIAAIGIRIR-RG 153 (221)
T ss_pred CCCcEEEEEEEecccc-----cccHHHHHHHHHHHHHHHHHHcCCcccccCCCCeEEe-----cCCceEEEEEEEEe-cc
Confidence 9999999999999998 8899999999999999999999999999999999999 6 499999999999 99
Q ss_pred EEEeceeeeecCCCCcCCcccCCCCCCCceeecccCCCCCCHHHHHHHHhcccc
Q psy2898 168 YVYHGVSINVSMDLEPFNNINPCGYPGLVIVDMKKLGINTTISKVQHLFIKNFF 221 (222)
Q Consensus 168 vt~HG~alNv~~dL~~f~~I~pCGl~~~~vTSL~~lg~~~~~~~v~~~l~~~f~ 221 (222)
+|+||+||||++||++|+.|+|||+.+..||||.+++.++++++|...++++|+
T Consensus 154 vs~HGlALNv~~DL~~F~~I~PCG~~~~~~tsl~d~~~~v~~~~V~~~l~~~~~ 207 (221)
T COG0321 154 VTFHGLALNVNMDLSPFNRIVPCGYAGMEVTSLSDLGPPVTVDEVAKALVAAFA 207 (221)
T ss_pred cceeeeEEeccCCchhccceeccccCCCceeEHHHhCCCCcHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988999999999999885
No 3
>PRK14343 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=1.5e-72 Score=486.36 Aligned_cols=204 Identities=50% Similarity=0.919 Sum_probs=190.3
Q ss_pred CceeEEEECCccchHHHHHHHHHHHHhhcCCCCCeEEEEecCCeeeeccCCCcccccccccCCCcCEEEeCcCCCceeeC
Q psy2898 10 YSNLQIIQRGLEPYIVSFNAMLLFNSNRTNYTIDQLWFVEHFPVYTLGLKSNFSHILISKKLNNIPIIRTDRGGEVTYHG 89 (222)
Q Consensus 10 ~~~~~~~~lG~~~Y~~a~~~q~~~~~~~~~~~~d~lll~EH~Pv~T~Gr~~~~~~ll~~~~~~gi~v~~~~RGG~iTyHg 89 (222)
...+.++++|+++|+++|++|+++++++....+|+|||||||||||+|+++++++++.+. .++||++++|||++||||
T Consensus 12 ~~~~~v~~lG~v~Y~~a~~~q~~~~~~~~~~~~d~llllEHppVyT~G~~~~~~~ll~~~--~~i~v~~tdRGG~iTyHG 89 (235)
T PRK14343 12 ALPVTVRWRGREPYEACFDAMRAFTDARTADTPDEIWLVEHPPVYTLGQAGDPAHLLVAD--SGIPLVKVDRGGQITYHG 89 (235)
T ss_pred CCceEEEeCCCcCHHHHHHHHHHHHHHHhCCCCCEEEEECCCCCeeCCCCCChhhccCCc--CCCCEEEeCCCCceeEeC
Confidence 345889999999999999999999998777788999999999999999999999998654 379999999999999999
Q ss_pred CCCeEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhcCCcceecCCCCcEEEecCCCCCCeEeecceeEeeCcEE
Q psy2898 90 PGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANGPFSGAKIASIGLKISAKGYV 169 (222)
Q Consensus 90 PGQLv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~~~~~~KIasiGv~i~~~~vt 169 (222)
|||||+|||+||+++ ++++++|++.||+++|++|++|||+++++++++|||+..+..+++||||||++++ +|+|
T Consensus 90 PGQLV~YpIl~L~~~-----~~~v~~yv~~lE~~vI~~l~~~gi~~~~~~~~~GVwv~~~~~~~~KIaaIGv~v~-r~vT 163 (235)
T PRK14343 90 PGQVVAYLLLDLRRR-----KLMVRELVTRIEQAVIDTLAAYNLASERKAGAPGIYVASGPHQGAKIAALGLKIR-NGCS 163 (235)
T ss_pred CCeEEEEEEEEcccc-----CCCHHHHHHHHHHHHHHHHHHcCCceeecCCCCeEEEeCCCCCCCeEEEEeeeee-ccee
Confidence 999999999999998 8999999999999999999999999999999999999322122799999999999 9999
Q ss_pred EeceeeeecCCCCcCCcccCCCCCCCceeecccCCCCCCHHHHHHHHhcccc
Q psy2898 170 YHGVSINVSMDLEPFNNINPCGYPGLVIVDMKKLGINTTISKVQHLFIKNFF 221 (222)
Q Consensus 170 ~HG~alNv~~dL~~f~~I~pCGl~~~~vTSL~~lg~~~~~~~v~~~l~~~f~ 221 (222)
+|||||||++||++|+.|+|||++|.+||||+++|.++++++|++.|+++|+
T Consensus 164 ~HG~ALNv~~DL~~F~~I~PCGl~~~~vTSL~~lg~~~~~~~v~~~l~~~f~ 215 (235)
T PRK14343 164 YHGLSLNVKMDLRPFLAINPCGYAGLETVDMASLGVAADWADVAQTLARRLI 215 (235)
T ss_pred ecccEEEeCCCchhhCcEECCCCCCCcEeeHHHhCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999889999999999999999885
No 4
>PRK14346 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=2.4e-72 Score=483.42 Aligned_cols=201 Identities=43% Similarity=0.775 Sum_probs=188.4
Q ss_pred eeEEEECCccchHHHHHHHHHHHHhhcCCCCCeEEEEecCCeeeeccCCCcccccccccCCCcCEEEeCcCCCceeeCCC
Q psy2898 12 NLQIIQRGLEPYIVSFNAMLLFNSNRTNYTIDQLWFVEHFPVYTLGLKSNFSHILISKKLNNIPIIRTDRGGEVTYHGPG 91 (222)
Q Consensus 12 ~~~~~~lG~~~Y~~a~~~q~~~~~~~~~~~~d~lll~EH~Pv~T~Gr~~~~~~ll~~~~~~gi~v~~~~RGG~iTyHgPG 91 (222)
++.++++|+++|++||++|+++++.+.+..+|+|||||||||||+|+++++++++.+. ++||++++|||++||||||
T Consensus 2 ~~~~~~lG~v~Y~~a~~~q~~~~~~~~~~~~d~llllEHppVyT~G~~~~~~~ll~~~---~i~v~~tdRGG~iTyHGPG 78 (230)
T PRK14346 2 AMDRRMLGRVDYLATVQAMQAFTAERTPETPDELWICEHPPVYTQGLAGKADHVLNPG---DIPVVATNRGGQVTYHGPG 78 (230)
T ss_pred eEEEEeCCCcCHHHHHHHHHHHHHHhhCCCCCEEEEEcCCCCeeCCCCCChhhccCCC---CCcEEEeCCCcceeEECCC
Confidence 3678899999999999999999988877789999999999999999999999998776 8999999999999999999
Q ss_pred CeEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhcCCcceecCCCCcEEEecCC---------------------
Q psy2898 92 QAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANGP--------------------- 150 (222)
Q Consensus 92 QLv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~~--------------------- 150 (222)
|||+|||+||+++ +.++++|++.||+++|++|++|||++++.++++||||....
T Consensus 79 QlV~YpildL~~~-----~~~vr~yv~~lE~~vI~~l~~~gi~~~~~~~~~GVWv~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (230)
T PRK14346 79 QVVAYPLIDLRRA-----GYFVKEYVYRIEEAVIRTLAHFGVTGHRVAGAPGIYVRLDDPFSHAALPQRPQKRGGGAPQP 153 (230)
T ss_pred eEEEEEEEecccc-----CCCHHHHHHHHHHHHHHHHHHhCCceEEcCCCCEEEEcCCCccccccccccccccccccccc
Confidence 9999999999998 88999999999999999999999999999999999994210
Q ss_pred --CCCCeEeecceeEeeCcEEEeceeeeecCCCCcCCcccCCCCCCCceeecccCCCCCCHHHHHHHHhcccc
Q psy2898 151 --FSGAKIASIGLKISAKGYVYHGVSINVSMDLEPFNNINPCGYPGLVIVDMKKLGINTTISKVQHLFIKNFF 221 (222)
Q Consensus 151 --~~~~KIasiGv~i~~~~vt~HG~alNv~~dL~~f~~I~pCGl~~~~vTSL~~lg~~~~~~~v~~~l~~~f~ 221 (222)
.+++||||||++++ +|+|+||+||||++||++|+.|+|||+.+..||||+++|.+++++++++.++++|+
T Consensus 154 ~~~~~~KIaAiGv~v~-r~vT~HG~ALNv~~DL~~F~~IvPCGl~~~~vTSL~~lg~~~~~~~v~~~l~~~f~ 225 (230)
T PRK14346 154 PFRGLGKIAALGIKVS-RHCTYHGVALNVAMDLEPFSRINPCGYAGLQTVDLSTIGVQTTWDEAASVLGQQLA 225 (230)
T ss_pred cccccceEEEEeeEEe-cceeecceeEEcCCChhhhCcEECCCCCCCceeeHHHhCCCCCHHHHHHHHHHHHH
Confidence 01379999999999 99999999999999999999999999999999999999999999999999999885
No 5
>PRK14341 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=2.5e-72 Score=480.26 Aligned_cols=202 Identities=32% Similarity=0.582 Sum_probs=186.9
Q ss_pred ceeEEEECCccchHHHHHHHHHHHHhh-cCCCCCeEEEEecCCeeeeccCCCcccccccccCCCcCEEEeCcCCCceeeC
Q psy2898 11 SNLQIIQRGLEPYIVSFNAMLLFNSNR-TNYTIDQLWFVEHFPVYTLGLKSNFSHILISKKLNNIPIIRTDRGGEVTYHG 89 (222)
Q Consensus 11 ~~~~~~~lG~~~Y~~a~~~q~~~~~~~-~~~~~d~lll~EH~Pv~T~Gr~~~~~~ll~~~~~~gi~v~~~~RGG~iTyHg 89 (222)
..+.+.++|+++|++||++|+++++++ .+..+|+|||||||||||+|++++.++++++. ++||++++|||++||||
T Consensus 3 ~~~~~~~~g~~~Y~~~~~~q~~~~~~~~~~~~~~~llllEH~pVyT~G~~~~~~~ll~~~---~i~v~~t~RGG~iTyHG 79 (213)
T PRK14341 3 PVEWRISDGLVPYPEALAFMEARVAAIAAGTADELVWLLEHPPLYTAGTSAKAEDLLDPD---RFPVYETGRGGQYTYHG 79 (213)
T ss_pred ceEEEecCCccCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCeeCCCCCChhhccCCC---CCCEEEeCCCcceeEEC
Confidence 456678899999999999999999874 55567899999999999999999999998776 89999999999999999
Q ss_pred CCCeEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhcCCcceecCCCCcEEEecC---CCCCCeEeecceeEeeC
Q psy2898 90 PGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANG---PFSGAKIASIGLKISAK 166 (222)
Q Consensus 90 PGQLv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~---~~~~~KIasiGv~i~~~ 166 (222)
|||||+|||+||+++ +.++++||+.||+++|++|++|||++++.++.+|||+... ...++||||||++++ +
T Consensus 80 PGQlV~YpIl~L~~~-----~~~v~~yv~~lE~~iI~~l~~~gi~~~~~~~~~GVWv~~~~~~~~~~~KIaaIGv~v~-r 153 (213)
T PRK14341 80 PGQRVAYVMLDLKRR-----RRDVRAFVAALEEWIIATLAAFNIRGERREDRVGVWVRRPDKGSGAEDKIAAIGVRLR-R 153 (213)
T ss_pred CCeEEEEEEEEcccc-----CCCHHHHHHHHHHHHHHHHHHhCCceEEcCCCCeEEecCccCCCCCCCcEEEEeeeEe-c
Confidence 999999999999998 8999999999999999999999999999999999999310 011589999999999 9
Q ss_pred cEEEeceeeeecCCCCcCCcccCCCCCCCceeecccCCCCCCHHHHHHHHhcccc
Q psy2898 167 GYVYHGVSINVSMDLEPFNNINPCGYPGLVIVDMKKLGINTTISKVQHLFIKNFF 221 (222)
Q Consensus 167 ~vt~HG~alNv~~dL~~f~~I~pCGl~~~~vTSL~~lg~~~~~~~v~~~l~~~f~ 221 (222)
|+|+||||||||+||++|+.|+|||++++.||||+++|.+++++++++.++++|+
T Consensus 154 ~vT~HG~ALNv~~dL~~F~~IvPCGl~~~~vTSl~~~g~~~~~~~v~~~l~~~f~ 208 (213)
T PRK14341 154 WVSFHGISINVEPDLSHFSGIVPCGISEHGVTSLVDLGLPVTMDDVDAALKKAFE 208 (213)
T ss_pred ceeccceEEEecCChhhhCcEecCCCCCCcEeeHHHhCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999885
No 6
>PRK14344 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=1.3e-71 Score=477.75 Aligned_cols=199 Identities=30% Similarity=0.473 Sum_probs=187.2
Q ss_pred eeEEEECCccchHHHHHHHHHHHHhhc--CCCCCeEEEEecCCeeeeccCCCcccccccccCCCcCEEEeCcCCCceeeC
Q psy2898 12 NLQIIQRGLEPYIVSFNAMLLFNSNRT--NYTIDQLWFVEHFPVYTLGLKSNFSHILISKKLNNIPIIRTDRGGEVTYHG 89 (222)
Q Consensus 12 ~~~~~~lG~~~Y~~a~~~q~~~~~~~~--~~~~d~lll~EH~Pv~T~Gr~~~~~~ll~~~~~~gi~v~~~~RGG~iTyHg 89 (222)
++.+.++|+++|++||++|+++++++. ...+|+|||||||||||+||++++++++.+.+..++||++++|||++||||
T Consensus 18 ~~~~~~lg~v~Y~~a~~~Q~~~~~~~~~~~~~~d~llllEH~pVyT~G~~~~~~~l~~~~~~~~~~v~~~~RGG~iTyHG 97 (223)
T PRK14344 18 AILFEPDNIVPFEDAWKWQKEWQQALIEDPSNPQAVWLLEHQLCYTLGRGASEDNLLFSLNNPPADVFRIDRGGEVTHHM 97 (223)
T ss_pred eEEEecCCccCHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCeeCCCCCChhhccCccccCCCcEEEcCCCceeeEEC
Confidence 578899999999999999999998743 345899999999999999999999998864333489999999999999999
Q ss_pred CCCeEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhcCCcceecCCCCcEEEecCCCCCCeEeecceeEeeCcEE
Q psy2898 90 PGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANGPFSGAKIASIGLKISAKGYV 169 (222)
Q Consensus 90 PGQLv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~~~~~~KIasiGv~i~~~~vt 169 (222)
|||||+|||+||+++ +.++++|++.||+++|++|++|||++++.++.+|||+ +++||||||++++ +|+|
T Consensus 98 PGQLV~YpIl~L~~~-----~~~v~~yv~~lE~~ii~~l~~~gi~~~~~~~~~GVWv-----~~~KIaaIGv~v~-r~vT 166 (223)
T PRK14344 98 PGQLVTYLVLDLRRF-----NKDLNWYLRQLEQVLIDVLADLGIDGERLDGLTGVWI-----GNKKVASIGIGCR-RWIT 166 (223)
T ss_pred CCcEEEEEEEEcccc-----CCCHHHHHHHHHHHHHHHHHHcCCceeecCCCCcEEc-----CCCeEEEEeEeEe-ccee
Confidence 999999999999998 8899999999999999999999999999999999999 8899999999999 9999
Q ss_pred EeceeeeecCCCCcCCcccCCCCCCCceeecccCCCCCCHHHHHHHHhcccc
Q psy2898 170 YHGVSINVSMDLEPFNNINPCGYPGLVIVDMKKLGINTTISKVQHLFIKNFF 221 (222)
Q Consensus 170 ~HG~alNv~~dL~~f~~I~pCGl~~~~vTSL~~lg~~~~~~~v~~~l~~~f~ 221 (222)
+||+||||++||++|+.|+|||+++..||||++++.+++++++++.++++|+
T Consensus 167 ~HG~ALNv~~dL~~F~~IvPCGl~~~~vTSl~~~~~~~~~~~v~~~l~~~f~ 218 (223)
T PRK14344 167 QHGFSLNVDCDLEGFNKIVPCGLEGCQVGRLSDWIPGLNIKEVKPLLKKSLQ 218 (223)
T ss_pred ecceEEecCCCccccCcEEcCCCCCCcEeeHHHHcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999899999999999999885
No 7
>PRK14347 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=1.5e-71 Score=473.55 Aligned_cols=202 Identities=31% Similarity=0.525 Sum_probs=184.7
Q ss_pred eEEEECCccchHHHHHHHHHHHHhhc-CCCCCeEEEEecCCeeeeccCCCcccccccccCCCcCEEEeCcCCCceeeCCC
Q psy2898 13 LQIIQRGLEPYIVSFNAMLLFNSNRT-NYTIDQLWFVEHFPVYTLGLKSNFSHILISKKLNNIPIIRTDRGGEVTYHGPG 91 (222)
Q Consensus 13 ~~~~~lG~~~Y~~a~~~q~~~~~~~~-~~~~d~lll~EH~Pv~T~Gr~~~~~~ll~~~~~~gi~v~~~~RGG~iTyHgPG 91 (222)
+.+.++|+++|++||++|+++++++. +..+|+|||||||||||+|++++.++++.+. ++||++++|||++||||||
T Consensus 3 ~~~~~~g~~~Y~~a~~~q~~~~~~~~~~~~~d~llllEH~pVyT~G~~~~~~~ll~~~---~i~v~~t~RGG~vTyHGPG 79 (209)
T PRK14347 3 RFITIPDFADYQVTLKLMEDYVNKVISDHEPEIVYLVEHSEVYTAGTNYKQEELLNYG---DIPVIYTGRGGKFTFHGPG 79 (209)
T ss_pred eEEecCCccCHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCeeCCCCCChhhccccc---CCcEEEecCCcceEEeCCC
Confidence 34578999999999999999998854 4458999999999999999999999988665 8999999999999999999
Q ss_pred CeEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhcCCcceecCCCCcEEEecCCCCCCeEeecceeEeeCcEEEe
Q psy2898 92 QAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANGPFSGAKIASIGLKISAKGYVYH 171 (222)
Q Consensus 92 QLv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~~~~~~KIasiGv~i~~~~vt~H 171 (222)
|||+|||+||+++ +.+.++++|++.||+++|++|++|||++++.++.+|||+..+...++||||||++++ +|+|+|
T Consensus 80 QlV~YpIldL~~~---~~~~~v~~yv~~lE~~ii~~l~~~gi~~~~~~~~~GVWv~~~~~~~~KIaaiGv~v~-r~vT~H 155 (209)
T PRK14347 80 QRVIYPILNLASP---NRHKDLKLYIKMLEEWIINSLNYFGIKAYIIKDKVGIWVKVRKDEFAKIAAIGVRVR-KWVTYH 155 (209)
T ss_pred cEEEEEEEecccc---ccCCCHHHHHHHHHHHHHHHHHHcCCceEEcCCCCEEEEcCCCCCCceEEEEeEEEe-cceeec
Confidence 9999999999864 114699999999999999999999999999999999999422123689999999999 999999
Q ss_pred ceeeeecCCCCcCCcccCCCCCCCceeecccCCCCCCHHHHHHHHhcccc
Q psy2898 172 GVSINVSMDLEPFNNINPCGYPGLVIVDMKKLGINTTISKVQHLFIKNFF 221 (222)
Q Consensus 172 G~alNv~~dL~~f~~I~pCGl~~~~vTSL~~lg~~~~~~~v~~~l~~~f~ 221 (222)
|+|||||+||++|+.|+|||+++..||||+++|.+++++++++.++++|+
T Consensus 156 G~AlNv~~dL~~F~~IvPCGl~~~~vTSl~~~g~~~~~~~v~~~l~~~f~ 205 (209)
T PRK14347 156 GVAINISTDLSKFSGIIPCGLENSLVTSLNQLGIHVEMSEFDKIIQTEFN 205 (209)
T ss_pred ceEEEeCCCccccCcEECCCCCCCcEeeHHHhCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999885
No 8
>PRK14348 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=1e-71 Score=478.54 Aligned_cols=203 Identities=28% Similarity=0.495 Sum_probs=184.2
Q ss_pred eEEEECCccchHHHHHHHHHHHHhhc-----CC-CCCeEEEEecCCeeeeccCCCccccccccc---CCCcCEEEeCcCC
Q psy2898 13 LQIIQRGLEPYIVSFNAMLLFNSNRT-----NY-TIDQLWFVEHFPVYTLGLKSNFSHILISKK---LNNIPIIRTDRGG 83 (222)
Q Consensus 13 ~~~~~lG~~~Y~~a~~~q~~~~~~~~-----~~-~~d~lll~EH~Pv~T~Gr~~~~~~ll~~~~---~~gi~v~~~~RGG 83 (222)
+.+.++|+++|++||++|+++++++. +. .+|+|||||||||||+||++++++++.+.+ ..++||++++|||
T Consensus 3 ~~~~~lg~~~Y~~a~~~q~~~~~~~~~~~~~~~~~~d~llllEH~pVyT~G~~~~~~~ll~~~~~l~~~~~~v~~t~RGG 82 (221)
T PRK14348 3 TITTDWELIPYSEAWSRQTEWFDALVHAKQNGESYENRIIFCEHPHVYTLGRSGKENNMLLGEEQLKTIGATLYHIDRGG 82 (221)
T ss_pred EEEEecCCcCHHHHHHHHHHHHHHHHhhhhcCCCCCCEEEEEcCCCCeeCCcCCCchhccCChhhhcccCCcEEEeCCCC
Confidence 46789999999999999998887632 22 369999999999999999999999886542 3589999999999
Q ss_pred CceeeCCCCeEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhcCCcceecCCCCcEEEecCCCCCCeEeecceeE
Q psy2898 84 EVTYHGPGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANGPFSGAKIASIGLKI 163 (222)
Q Consensus 84 ~iTyHgPGQLv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~~~~~~KIasiGv~i 163 (222)
++|||||||||+|||+||+++ +.++++|++.||+++|++|++|||++++.++++|||+......++||||||+++
T Consensus 83 ~iTyHGPGQlV~Ypil~L~~~-----~~~v~~yv~~lE~~vI~~l~~~gi~~~~~~~~~GVWv~~~~~~~~KIaaIGv~v 157 (221)
T PRK14348 83 DITYHGPGQLVCYPILNLEEF-----GLGLKEYVHLLEEAVIRVCASYGVVAGRLEKATGVWLEGDTSRARKICAIGVRS 157 (221)
T ss_pred ceEEECCCeEEEEEEEEcccc-----CCCHHHHHHHHHHHHHHHHHHcCCceeecCCCCCEEecCCCCCCCcEEEEeEEe
Confidence 999999999999999999998 889999999999999999999999999999999999932111269999999999
Q ss_pred eeCcEEEeceeeeecCCCCcCCcccCCCCCCCceeeccc-CCCCCCHHHHHHHHhcccc
Q psy2898 164 SAKGYVYHGVSINVSMDLEPFNNINPCGYPGLVIVDMKK-LGINTTISKVQHLFIKNFF 221 (222)
Q Consensus 164 ~~~~vt~HG~alNv~~dL~~f~~I~pCGl~~~~vTSL~~-lg~~~~~~~v~~~l~~~f~ 221 (222)
+ +|||+||||||||+||++|+.|+|||++|+.||||++ +|.++++++|++.++++|+
T Consensus 158 ~-r~vT~HG~ALNv~~dL~~F~~IvPCGl~~~~vTSl~~~~g~~~~~~~v~~~l~~~f~ 215 (221)
T PRK14348 158 S-HYVTMHGLALNVNTDLRYFSYIHPCGFIDKGVTSLQQELGHSIDMAEVKERLGRELL 215 (221)
T ss_pred c-cceeecceEEEecCChHHhccCccCCCCCCcEEeeHHHhCCCCCHHHHHHHHHHHHH
Confidence 9 9999999999999999999999999999999999976 8999999999999999886
No 9
>PRK14349 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=2.9e-71 Score=474.01 Aligned_cols=198 Identities=40% Similarity=0.765 Sum_probs=184.8
Q ss_pred EEECCc-cchHHHHHHHHHHHHhhcCCCCCeEEEEecCCeeeeccCCCcccccccccCCCcCEEEeCcCCCceeeCCCCe
Q psy2898 15 IIQRGL-EPYIVSFNAMLLFNSNRTNYTIDQLWFVEHFPVYTLGLKSNFSHILISKKLNNIPIIRTDRGGEVTYHGPGQA 93 (222)
Q Consensus 15 ~~~lG~-~~Y~~a~~~q~~~~~~~~~~~~d~lll~EH~Pv~T~Gr~~~~~~ll~~~~~~gi~v~~~~RGG~iTyHgPGQL 93 (222)
++.+|. ++|++||++|+++++++....+|+|||||||||||+|+++++++++.+. ++||++++|||++||||||||
T Consensus 2 ~~~~~~~~~Y~~a~~~q~~~~~~~~~~~~d~llllEH~pVyT~G~~~~~~~ll~~~---~i~vv~t~RGG~iTyHGPGQL 78 (220)
T PRK14349 2 IKWLARPADYASVWDAMKAFTAARGPGTADEIWLCEHAPVYTLGQAGRPEHLLNPG---LIPVVHCDRGGQVTYHGPGQV 78 (220)
T ss_pred eeeccCccCHHHHHHHHHHHHHHHhCCCCCEEEEEcCCCCeeCCCCCChhhccCCC---CCcEEEecCCcceEEeCCCcE
Confidence 456666 9999999999999998877788999999999999999999999998776 899999999999999999999
Q ss_pred EEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhcCCc-ceecCCCCcEEEecCCCCCCeEeecceeEeeCcEEEec
Q psy2898 94 IIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNIN-CKRKKNAPGVYIANGPFSGAKIASIGLKISAKGYVYHG 172 (222)
Q Consensus 94 v~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi~-a~~~~~~~GVwv~~~~~~~~KIasiGv~i~~~~vt~HG 172 (222)
|+|||+||+++ +.++++|++.||+++|++|++|||+ +++.++++||||..+...++||||||++++ +|+|+||
T Consensus 79 V~YpIldL~~~-----~~~vr~yv~~LE~~~I~~l~~~gi~~a~~~~~~~GVWv~~~~~~~~KIaaiGv~v~-r~vT~HG 152 (220)
T PRK14349 79 LAYTLFDLRRA-----GLYVREYVDMLEQATLATLRELGLEQACRKPGAPGIYVPQPGGELAKIAALGVKVR-NGYAYHG 152 (220)
T ss_pred EEEEEEEcccC-----CCCHHHHHHHHHHHHHHHHHHhCCcceeecCCCCcEEeCCCCCCCceEEEEeeEEe-cceeecc
Confidence 99999999998 8899999999999999999999999 999999999999321112589999999999 9999999
Q ss_pred eeeeecCCCCcCCcccCCCCCCCceeecccCCCCCCHHHHHHHHhcccc
Q psy2898 173 VSINVSMDLEPFNNINPCGYPGLVIVDMKKLGINTTISKVQHLFIKNFF 221 (222)
Q Consensus 173 ~alNv~~dL~~f~~I~pCGl~~~~vTSL~~lg~~~~~~~v~~~l~~~f~ 221 (222)
+|||||+||++|+.|+||||++..||||+++|.+++++++++.++++|+
T Consensus 153 ~ALNv~~DL~~F~~IvPCGl~~~~vTSl~~~g~~~~~~~v~~~l~~~f~ 201 (220)
T PRK14349 153 LALNIDMDLSPFLGINPCGYEGLRTVDLAACGVRTSVERAGELLAAQLA 201 (220)
T ss_pred eeEEecCCchhhCcEEcCCCCCCcEeeHHHhCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999989999999999999999885
No 10
>PRK14345 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=4.1e-71 Score=478.66 Aligned_cols=201 Identities=28% Similarity=0.498 Sum_probs=184.7
Q ss_pred CceeEEEECCccchHHHHHHHHHHHHhhcCC-CCCeEEEEecCCeeeeccCCCcccccccccCCCcCEEEeCcCCCceee
Q psy2898 10 YSNLQIIQRGLEPYIVSFNAMLLFNSNRTNY-TIDQLWFVEHFPVYTLGLKSNFSHILISKKLNNIPIIRTDRGGEVTYH 88 (222)
Q Consensus 10 ~~~~~~~~lG~~~Y~~a~~~q~~~~~~~~~~-~~d~lll~EH~Pv~T~Gr~~~~~~ll~~~~~~gi~v~~~~RGG~iTyH 88 (222)
...+.++++|+++|+++|++|+++++++... .+|+||+||||||||+|+++++++++.. ++||++++|||++|||
T Consensus 9 ~~~~~~~~lG~~~Y~~~~~~Q~~l~~~~~~~~~~d~llllEH~pVyT~Gr~~~~~~l~~~----~i~v~~tdRGG~iTyH 84 (234)
T PRK14345 9 TMPIEVRRLGLVDYQEAWDLQRELADARVAGEGPDTLLLLEHPAVYTAGKRTEPHERPTD----GTPVVDVDRGGKITWH 84 (234)
T ss_pred CCceEEEECCCcCHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccCCCCCCccccccC----CCcEEEecCCCceeEe
Confidence 3558899999999999999999999986554 7899999999999999999998887643 7999999999999999
Q ss_pred CCCCeEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhcCCcceecCCCCcEEEecC-CCCCCeEeecceeEeeCc
Q psy2898 89 GPGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANG-PFSGAKIASIGLKISAKG 167 (222)
Q Consensus 89 gPGQLv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~-~~~~~KIasiGv~i~~~~ 167 (222)
||||||+|||+||++ +.++++||+.||+++|++|++|||+++++++++||||..+ ...++||||||++++ +|
T Consensus 85 GPGQLV~YpIldL~~------~~~v~~yv~~LE~~vI~~l~~~gi~a~~~~~~~GVWv~~~~~~~~~KIaaIGv~v~-r~ 157 (234)
T PRK14345 85 GPGQLVGYPIIKLAE------PLDVVDYVRRLEEALIAVCADLGLNAGRVDGRSGVWVPADGGRPDRKIAAIGIRVS-RG 157 (234)
T ss_pred CCCeEEEEEEEecCC------CCCHHHHHHHHHHHHHHHHHHcCCceeecCCCCeEEECCCCCCCcceEEEEEeeec-cc
Confidence 999999999999996 4699999999999999999999999999999999999321 012799999999999 99
Q ss_pred EEEeceeeeecCCCCcCCcccCCCCCCCceeeccc-CCCCCCHHHHHHHHhcccc
Q psy2898 168 YVYHGVSINVSMDLEPFNNINPCGYPGLVIVDMKK-LGINTTISKVQHLFIKNFF 221 (222)
Q Consensus 168 vt~HG~alNv~~dL~~f~~I~pCGl~~~~vTSL~~-lg~~~~~~~v~~~l~~~f~ 221 (222)
+|+||||||||+||++|+.|+|||++|..||||++ ++.++++++|++.++++|+
T Consensus 158 vT~HG~ALNV~~DL~~F~~IvPCGl~~~~vTSl~~~~g~~~~~~~v~~~l~~~f~ 212 (234)
T PRK14345 158 VTMHGFALNCDNDLAAFDAIVPCGISDAGVTTLSAELGRTVTVAEVVDPVAAALC 212 (234)
T ss_pred eeecceEEEeCCChHHhceEEeCCCCCCcEEehhHhhCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999976 8999999999999999885
No 11
>TIGR00214 lipB lipoate-protein ligase B. Involved in lipoate biosynthesis as the main determinant of the lipoyl-protein ligase activity required for lipoylation of enzymes such as alpha-ketoacid dehydrogenases. Involved in activation and re-activation (following denaturation) of lipoyl-protein ligases (calcium ion-dependant process).
Probab=100.00 E-value=3e-66 Score=434.06 Aligned_cols=174 Identities=37% Similarity=0.805 Sum_probs=162.9
Q ss_pred hcCCCCCeEEEEecCCeeeeccCCCcccccccccCCCcCEEEeCcCCCceeeCCCCeEEEEeeecCcccccccCCcHHHH
Q psy2898 37 RTNYTIDQLWFVEHFPVYTLGLKSNFSHILISKKLNNIPIIRTDRGGEVTYHGPGQAIIYLLIDLRRRYSDNIKIYIKKL 116 (222)
Q Consensus 37 ~~~~~~d~lll~EH~Pv~T~Gr~~~~~~ll~~~~~~gi~v~~~~RGG~iTyHgPGQLv~YpIl~L~~~~~~~~~~~~~~~ 116 (222)
+.+..+|+||+||||||||+||+++.++++.+.+..+++|++++|||++|||||||||+|||+||+++ ++++++|
T Consensus 7 ~~~~~~d~llllEH~pVyT~G~~~~~~~l~~~~~~~~~~v~~~~RGG~iTyHGPGQLV~YpIl~L~~~-----~~~v~~y 81 (184)
T TIGR00214 7 RDRQTLDEIMLVEHYPVYTQGQAGKTEHLLFDPDIPPAEVVQSERGGQVTYHGPGQQVMYVILDLKRF-----QLDVRWL 81 (184)
T ss_pred ccCCCCCEEEEECCCCCeeCCCCCChhhccCCcCCCcceEEEeCCCCeeEEECCCeEEEEEEEEchhc-----CCCHHHH
Confidence 45567899999999999999999999999866522234499999999999999999999999999998 8999999
Q ss_pred HHHHHHHHHHHHhhcCCcceecCCCCcEEEecCCCCCCeEeecceeEeeCcEEEeceeeeecCCCCcCCcccCCCCCCCc
Q psy2898 117 VENIEEAVILTMSQYNINCKRKKNAPGVYIANGPFSGAKIASIGLKISAKGYVYHGVSINVSMDLEPFNNINPCGYPGLV 196 (222)
Q Consensus 117 v~~Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~~~~~~KIasiGv~i~~~~vt~HG~alNv~~dL~~f~~I~pCGl~~~~ 196 (222)
++.||+++|++|++|||++++.++++|||+ +++||||||++++ ||+|+|||||||++||++|+.|+|||+++..
T Consensus 82 v~~lE~~~I~~l~~~gi~a~~~~~~~GVWv-----~~~KIasIGv~v~-r~vt~HG~ALNv~~dL~~F~~I~PCGl~~~~ 155 (184)
T TIGR00214 82 VTQLEQTVIITLAELGIEGEPIADATGVWV-----EGKKVASLGIRVR-RGCTFHGLALNINMDLSPFSHINPCGYAGRE 155 (184)
T ss_pred HHHHHHHHHHHHHHcCCceEEcCCCCeEEe-----cCCEEEEEEEEEe-ccEeecceEEEcCCCchHhccEEcCCCCCCc
Confidence 999999999999999999999999999999 7899999999999 9999999999999999999999999999999
Q ss_pred eeecccCCCCCCHHHHHHHHhcccc
Q psy2898 197 IVDMKKLGINTTISKVQHLFIKNFF 221 (222)
Q Consensus 197 vTSL~~lg~~~~~~~v~~~l~~~f~ 221 (222)
||||++++.++++++|++.++++|+
T Consensus 156 vTSl~~~~~~~~~~~v~~~~~~~f~ 180 (184)
T TIGR00214 156 MGSLNQFLPGATVENVAPLLIKAFA 180 (184)
T ss_pred EeeHHHHcCCCCHHHHHHHHHHHHH
Confidence 9999998899999999999999886
No 12
>KOG0325|consensus
Probab=100.00 E-value=4e-50 Score=339.52 Aligned_cols=194 Identities=28% Similarity=0.495 Sum_probs=168.0
Q ss_pred eeEEEECCccchHHHHHHHHHHHHhh-----c-CCCCCeEEEEecCCeeeeccCCCccccccccc--CCCcCEEEeCcCC
Q psy2898 12 NLQIIQRGLEPYIVSFNAMLLFNSNR-----T-NYTIDQLWFVEHFPVYTLGLKSNFSHILISKK--LNNIPIIRTDRGG 83 (222)
Q Consensus 12 ~~~~~~lG~~~Y~~a~~~q~~~~~~~-----~-~~~~d~lll~EH~Pv~T~Gr~~~~~~ll~~~~--~~gi~v~~~~RGG 83 (222)
.......|+++|.+..++|+++++.. . ....+++++.||+||||+|.+........... ..+..++++.|||
T Consensus 6 ~~~~~r~g~~~y~~~~~lq~rlvr~~~~~~~s~~~~~p~il~~eh~PvYT~G~rt~~~~~~~e~~l~~~ga~~~~t~RGG 85 (226)
T KOG0325|consen 6 GVETVRAGLVHYHRTLALQNRLVRSVKILKKSGTHPIPRILTNEHLPVYTYGCRTLDFTLYDESRLYKLGAEFHKTERGG 85 (226)
T ss_pred eEEEEEcccchHHhhhHHHHHHHHHhhhcccccCCCCCEEeecccCCeeeeccccCCcccchhhhhhhcCceEEEeecCc
Confidence 46778899999999999999999874 1 23568999999999999996654332211111 3589999999999
Q ss_pred CceeeCCCCeEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhcCCcceecCCCCcEEEecCCCCCCeEeecceeE
Q psy2898 84 EVTYHGPGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANGPFSGAKIASIGLKI 163 (222)
Q Consensus 84 ~iTyHgPGQLv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~~~~~~KIasiGv~i 163 (222)
++|||||||+++|||+||+.+ +++.|+||..|| +++..|||++....+.+|||| .++|||+||+++
T Consensus 86 ~iTfHGPgQl~~ypIidL~~f-----~~~~r~~Vs~le----~~c~~~~i~~~~~t~~tgvwV-----~d~k~aaiGi~v 151 (226)
T KOG0325|consen 86 LITFHGPGQLVAYPIIDLRHF-----GFSARCYVSTLE----AACPDFGIKGTASTKDTGVWV-----GDAKIAAIGIRV 151 (226)
T ss_pred eEEEeCCCceEEEEEEEeecc-----ccchhhHHHHHH----hhcccccccccccccccceee-----cCCeeEEEEEEe
Confidence 999999999999999999999 899999999999 677889999776666899999 778999999999
Q ss_pred eeCcEEEeceeeeecCCCCcCCcccCCCCCCCceeeccc-CCCCCCHHHHHHHHhccc
Q psy2898 164 SAKGYVYHGVSINVSMDLEPFNNINPCGYPGLVIVDMKK-LGINTTISKVQHLFIKNF 220 (222)
Q Consensus 164 ~~~~vt~HG~alNv~~dL~~f~~I~pCGl~~~~vTSL~~-lg~~~~~~~v~~~l~~~f 220 (222)
+ ++||+||+|||+++||++|+.|+|||+.++.+||+.+ +.+.++.+++++....+|
T Consensus 152 s-r~IT~HGlaLN~~tDL~~fnhiv~CGi~~~~vtSi~~e~~~~~~~~~~~~~~l~~l 208 (226)
T KOG0325|consen 152 S-REITYHGLALNVNTDLTYFNHIVPCGIYGRGVTSISKEIRRLVTVEESVAIRLVSL 208 (226)
T ss_pred c-CcEeecceEEEeccCcchhhccccceeeccccceehhhhccccchhHhHHHHHHHH
Confidence 9 9999999999999999999999999999999999985 888888888777666554
No 13
>TIGR00545 lipoyltrans lipoyltransferase and lipoate-protein ligase. One member of this group of proteins is bovine lipoyltransferase, which transfers the lipoyl group from lipoyl-AMP to the specific Lys of lipoate-dependent enzymes. However, it does not first activate lipoic acid with ATP to create lipoyl-AMP and pyrophosphate. Another member of this group, lipoate-protein ligase A from E. coli, catalyzes both the activation and the transfer of lipoate. Homology between the two is full-length, except for the bovine mitochondrial targeting signal, but is strongest toward the N-terminus.
Probab=99.79 E-value=5.2e-18 Score=153.88 Aligned_cols=185 Identities=16% Similarity=0.195 Sum_probs=135.1
Q ss_pred chHHHHHHHHHHHHhhc-CCCCCeEEEEecCCeeeeccCCCcccccccc--cCCCcCEEEeCcCCCceeeCCCCeEEEEe
Q psy2898 22 PYIVSFNAMLLFNSNRT-NYTIDQLWFVEHFPVYTLGLKSNFSHILISK--KLNNIPIIRTDRGGEVTYHGPGQAIIYLL 98 (222)
Q Consensus 22 ~Y~~a~~~q~~~~~~~~-~~~~d~lll~EH~Pv~T~Gr~~~~~~ll~~~--~~~gi~v~~~~RGG~iTyHgPGQLv~YpI 98 (222)
+=...+++.+.+.+... +..+.+|+|++++|++.+|+++++...++.+ +..||||+|+..||++.||++|++....|
T Consensus 10 d~~~nlA~ee~Ll~~~~~~~~~~~l~~w~~~p~vviG~~Q~~~~ev~~~~~~~~gi~vvRR~sGGGaVyhD~g~l~~s~i 89 (324)
T TIGR00545 10 DPYFNLALEEYLFKEFPKTQRGKVLLFWQNANTIVIGRNQNTWAEVNLKELEEDNVNLFRRFSGGGAVFHDLGNICFSFI 89 (324)
T ss_pred CHHHHHHHHHHHHHccccCCCCcEEEEEcCCCeEEECCCCCHHHHhCHHHHHHcCCeEEEECCCCceEEEcCCceEEEEE
Confidence 33445566666666543 3445799999999999999999976555433 24699999999999999999999999988
Q ss_pred eecCcccccccCCcHHHHHHHHHHHHHHHHhhcCCcceecCCCCcEEEecCCCCCCeEeecceeEeeCcEEEeceeeeec
Q psy2898 99 IDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANGPFSGAKIASIGLKISAKGYVYHGVSINVS 178 (222)
Q Consensus 99 l~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~~~~~~KIasiGv~i~~~~vt~HG~alNv~ 178 (222)
.+-.. .....| +.+.+.++++|+.+|++++.. +++++.+ +++||++.+.+.. ++..+|..+|=++
T Consensus 90 ~~~~~-------~~~~~~-~~~~~~i~~aL~~lGi~a~~~-~rnDl~v-----~gkKisGsAq~~~-~~~~l~HGtlL~~ 154 (324)
T TIGR00545 90 TPKDG-------KEFENA-KIFTRNVIKALNSLGVEAELS-GRNDLVV-----DGRKISGSAYYIT-KDRGFHHGTLLFD 154 (324)
T ss_pred EcCCc-------cchhhH-HHHHHHHHHHHHHhCCCeEEC-CCceEEE-----CCEEEEEEeeeee-CCEEEEEEEEEcc
Confidence 75432 234456 778889999999999999865 5899999 8999999999999 5555444454455
Q ss_pred CCCCcC-CcccC--C-----CCCC--CceeecccCCCCCCHHHHHHHHhcccc
Q psy2898 179 MDLEPF-NNINP--C-----GYPG--LVIVDMKKLGINTTISKVQHLFIKNFF 221 (222)
Q Consensus 179 ~dL~~f-~~I~p--C-----Gl~~--~~vTSL~~lg~~~~~~~v~~~l~~~f~ 221 (222)
.|++.. ..+.| - |++. .+||+|.++-..++++++.+.+.++|+
T Consensus 155 ~d~~~l~~~L~~~~~k~~skgv~sv~~rv~nl~~~l~~~~~e~~~~~l~~~f~ 207 (324)
T TIGR00545 155 ADLSKLAKYLNVDKTKIESKGITSVRSRVVNVKEYLPNITTEQFLEEMTQAFF 207 (324)
T ss_pred CCHHHHHHhcCCChhhhHhhcccchhhhcccHHHhCCCCCHHHHHHHHHHHHH
Confidence 555421 12222 2 3322 467777773334899999999998774
No 14
>PRK03822 lplA lipoate-protein ligase A; Provisional
Probab=99.78 E-value=6.1e-18 Score=154.21 Aligned_cols=195 Identities=12% Similarity=0.168 Sum_probs=135.6
Q ss_pred eeEEEECCccchHHHHHHHHHHHHhhcCCCCCeEEEEecCCeeeeccCCCcccccccc--cCCCcCEEEeCcCCCceeeC
Q psy2898 12 NLQIIQRGLEPYIVSFNAMLLFNSNRTNYTIDQLWFVEHFPVYTLGLKSNFSHILISK--KLNNIPIIRTDRGGEVTYHG 89 (222)
Q Consensus 12 ~~~~~~lG~~~Y~~a~~~q~~~~~~~~~~~~d~lll~EH~Pv~T~Gr~~~~~~ll~~~--~~~gi~v~~~~RGG~iTyHg 89 (222)
.|.+...+..+=...+++.+.+.+.... ..++|++++++|++.+||+|++...++.+ +..||||+|+..||++.||+
T Consensus 3 ~~~~i~s~~~dp~~NlAlEe~Ll~~~~~-~~~~l~~w~n~p~VvIGr~Qn~~~Evn~~~~~~~gI~vvRR~SGGGAVyhD 81 (338)
T PRK03822 3 TLRLLISDSYDPWFNLAVEECIFRQMPA-TQRVLFLWRNADTVVIGRAQNPWKECNTRRMEEDNVRLARRSSGGGAVFHD 81 (338)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHhcCCC-CCCEEEEEcCCCeEEECCCCCHHHHhCHHHHHHcCCcEEEECCCCceEEEc
Confidence 3445544444444455555555544333 35689999999999999999987666544 35699999999999999999
Q ss_pred CCCeEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhcCCcceecCCCCcEEEecCCCCCCeEeecceeEeeCcEE
Q psy2898 90 PGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANGPFSGAKIASIGLKISAKGYV 169 (222)
Q Consensus 90 PGQLv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~~~~~~KIasiGv~i~~~~vt 169 (222)
+|++....|.+- . ..+... ..+.++++|+.+||+++. .+++++.+..+ .+++||+..+.+.. ++..
T Consensus 82 ~Gnl~~s~i~~~--~-----~~~~~~----~~~~ii~aL~~lGi~a~~-~~rnDi~v~~~-~g~kKisGsAq~~~-~~~~ 147 (338)
T PRK03822 82 LGNTCFTFMAGK--P-----EYDKTI----STSIVLNALNSLGVSAEA-SGRNDLVVKTA-EGDRKVSGSAYRET-KDRG 147 (338)
T ss_pred CCCcEEEEEeCC--C-----ccCHHH----HHHHHHHHHHHcCCceeE-CCCccEEEecC-CCCcEEEEEeeeee-CCeE
Confidence 999988888642 2 223222 356999999999999986 46899999210 12599999999999 5555
Q ss_pred EeceeeeecCCCCcC--------CcccCCCCCC--CceeecccCCCCCCHHHHHHHHhcccc
Q psy2898 170 YHGVSINVSMDLEPF--------NNINPCGYPG--LVIVDMKKLGINTTISKVQHLFIKNFF 221 (222)
Q Consensus 170 ~HG~alNv~~dL~~f--------~~I~pCGl~~--~~vTSL~~lg~~~~~~~v~~~l~~~f~ 221 (222)
+|.-+|=++.|++.. .++..=|+++ .+||+|.++...++++++++.+.++|+
T Consensus 148 l~HGTlL~~~d~~~l~~~L~~~~~k~~skgv~Sv~srVtnl~~~~~~~~~e~~~~~l~~~f~ 209 (338)
T PRK03822 148 FHHGTLLLNADLSRLANYLNPDKKKLQAKGITSVRSRVTNLTELLPGITHEQVCEAITEAFF 209 (338)
T ss_pred EEEEEEEecCCHHHHHHHhCCChhhhhhccccchHhhhccHHHhCCCCCHHHHHHHHHHHHH
Confidence 555555555555432 2222223433 467777774446899999999998874
No 15
>PRK14061 unknown domain/lipoate-protein ligase A fusion protein; Provisional
Probab=99.72 E-value=2.3e-16 Score=151.35 Aligned_cols=196 Identities=12% Similarity=0.146 Sum_probs=137.1
Q ss_pred ceeEEEECCccchHHHHHHHHHHHHhhcCCCCCeEEEEecCCeeeeccCCCcccccccc--cCCCcCEEEeCcCCCceee
Q psy2898 11 SNLQIIQRGLEPYIVSFNAMLLFNSNRTNYTIDQLWFVEHFPVYTLGLKSNFSHILISK--KLNNIPIIRTDRGGEVTYH 88 (222)
Q Consensus 11 ~~~~~~~lG~~~Y~~a~~~q~~~~~~~~~~~~d~lll~EH~Pv~T~Gr~~~~~~ll~~~--~~~gi~v~~~~RGG~iTyH 88 (222)
+.+.+...+..+=...+++.+-+..... ...+.+++++++|++.+||++++...++.+ +..||||+|+..||++.||
T Consensus 226 ~~m~~i~s~s~dp~~NLAlEE~Ll~~~~-~~~~~l~lW~n~ptVvIGrnQN~~~EVNl~~~~~~gI~vVRR~SGGGAVYH 304 (562)
T PRK14061 226 STLRLLISDSYDPWFNLAVEECIFRQMP-ATQRVLFLWRNADTVVIGRAQNPWKECNTRRMEEDNVRLARRSSGGGAVFH 304 (562)
T ss_pred ccEEEEEcCCCCHHHHHHHHHHHHhcCC-CCCCEEEEEcCCCEEEECCCCCchhhhCHHHHHhcCCcEEEECCCCcEEEE
Confidence 3456665555454556665555554432 345679999999999999999998766654 3569999999999999999
Q ss_pred CCCCeEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhcCCcceecCCCCcEEEecCCCCCCeEeecceeEeeCcE
Q psy2898 89 GPGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANGPFSGAKIASIGLKISAKGY 168 (222)
Q Consensus 89 gPGQLv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~~~~~~KIasiGv~i~~~~v 168 (222)
++|++....|.+- . ..+...+ .+.++++|+.+||+++. .+++++.+.. ..+++||++.+.++. ++.
T Consensus 305 D~GNlnfSfi~~~--~-----~~~~~~~----~~~Ii~aL~~LGI~ae~-sgRNDI~v~~-~~~GkKISGsAq~~~-~~~ 370 (562)
T PRK14061 305 DLGNTCFTFMAGK--P-----EYDKTIS----TSIVLNALNALGVSAEA-SGRNDLVVKT-AEGDRKVSGSAYRET-KDR 370 (562)
T ss_pred cCCceEEEEEeCC--c-----ccchHHH----HHHHHHHHHHcCCCeEE-CCCccEEEee-CCCCcEEEEEeEEEe-CCe
Confidence 9999888888642 2 2344333 47999999999999986 4589998821 113899999999999 555
Q ss_pred EEeceeeeecCCCCc---CCcccCCCCCC-------CceeecccCCCCCCHHHHHHHHhcccc
Q psy2898 169 VYHGVSINVSMDLEP---FNNINPCGYPG-------LVIVDMKKLGINTTISKVQHLFIKNFF 221 (222)
Q Consensus 169 t~HG~alNv~~dL~~---f~~I~pCGl~~-------~~vTSL~~lg~~~~~~~v~~~l~~~f~ 221 (222)
.+|.-+|=++.|++. +.+..+-.+.+ .+||+|.++...++++++++.+.++|.
T Consensus 371 ~lhHGTLL~d~dl~~L~~~L~~~~~Kl~sKgvkSVrsRVtNL~e~l~~it~e~f~~~L~~~f~ 433 (562)
T PRK14061 371 GFHHGTLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELLPGIPHEQVCEAITEAFF 433 (562)
T ss_pred EEEEEEEEecCCHHHHHHHhCCCchhhhhhhhhhHHhhceeHHHhCCCCCHHHHHHHHHHHHH
Confidence 555444444444432 22222333333 457777774335899999999998874
No 16
>COG0095 LplA Lipoate-protein ligase A [Coenzyme metabolism]
Probab=99.69 E-value=9.5e-16 Score=134.23 Aligned_cols=195 Identities=15% Similarity=0.244 Sum_probs=137.7
Q ss_pred EEEECCccc--hHHHHHHHHHHHHhhcCCCCCeEEEEe-cCCeeeeccCCCcccccccc--cCCCcCEEEeCcCCCceee
Q psy2898 14 QIIQRGLEP--YIVSFNAMLLFNSNRTNYTIDQLWFVE-HFPVYTLGLKSNFSHILISK--KLNNIPIIRTDRGGEVTYH 88 (222)
Q Consensus 14 ~~~~lG~~~--Y~~a~~~q~~~~~~~~~~~~d~lll~E-H~Pv~T~Gr~~~~~~ll~~~--~~~gi~v~~~~RGG~iTyH 88 (222)
.+.+.+..+ -...+++.+.+........ +++++. ++|++.+|++++.....+-+ +..+++|+|+..||++.||
T Consensus 3 ~~~~~~~~~~~~~~n~A~de~ll~~~~~~~--~i~~~~~~~~~v~lG~~q~~~~Ev~~~~~~~~~i~vvRR~sGGGaV~h 80 (248)
T COG0095 3 RIIDLGIRDFDPAFNLALDEALLRSLSEGG--TLRLYWWNPPTVVLGRFQNTLPEVNLEYVKEDGIPVVRRPSGGGAVFH 80 (248)
T ss_pred eEEeccccCCCHHHHHHHHHHHHHhCCCCC--eEEEEEECCCeEEECCccchHhHhhHHHHHHcCCcEEEEcCCCceEEe
Confidence 344444433 4455666666666543222 565555 77899999999977544433 2358999999999999999
Q ss_pred CCCCeEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhcCCcceecCCCCcEEEecCCCCCCeEeecceeEeeCcE
Q psy2898 89 GPGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANGPFSGAKIASIGLKISAKGY 168 (222)
Q Consensus 89 gPGQLv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~~~~~~KIasiGv~i~~~~v 168 (222)
++|++....|++-... ..........+-+.++++|..+|+++...++++++=+ +++||++.+.+..++.+
T Consensus 81 d~g~l~~S~i~~~~~~-----~~~~~~~~~~~~~~~~~~l~~lgv~~~~~~~~nDl~v-----~gkKisG~Aq~~~~~~~ 150 (248)
T COG0095 81 DLGNLNYSVITPDEGG-----LESYETLYKFLLQPVIDALRALGVEGAECPGRNDLVV-----DGKKISGSAQRRTKGRI 150 (248)
T ss_pred cCCcEEEEEEECCCCc-----cccHHHHHHHHHHHHHHHHHHcCCCeeccCCCcceeE-----cCcEEeeHHHHhhCCcE
Confidence 9999999998766543 3467777778889999999999999444566899988 89999999999996666
Q ss_pred EEec-eeeeecCCC--CcC----CcccCCCCCC--CceeecccCCCCCCHHHHHHHHhcccc
Q psy2898 169 VYHG-VSINVSMDL--EPF----NNINPCGYPG--LVIVDMKKLGINTTISKVQHLFIKNFF 221 (222)
Q Consensus 169 t~HG-~alNv~~dL--~~f----~~I~pCGl~~--~~vTSL~~lg~~~~~~~v~~~l~~~f~ 221 (222)
-.|| +.++.+.++ +.| .+|..=|..+ .+|++++++ .+++++++.+.+.+.|.
T Consensus 151 l~hgtll~~~d~~~l~~~l~~~~~k~~~k~~~s~~~rv~~l~~~-~~~~~~e~~~~l~~~f~ 211 (248)
T COG0095 151 LHHGTLLLDIDLELLARVLRVPKEKIKSKGIKSVRERVANLEEL-LKISVEEFLEALLEAFF 211 (248)
T ss_pred EEEEEEEEeCCHHHHHHHhCCChhhhhhcccccHHHhCcchhhc-cCCCHHHHHHHHHHHHH
Confidence 6666 334555432 112 1222233332 456666677 78999999999988775
No 17
>PRK08330 biotin--protein ligase; Provisional
Probab=99.51 E-value=1.5e-13 Score=119.28 Aligned_cols=122 Identities=22% Similarity=0.240 Sum_probs=101.8
Q ss_pred CcCCCceeeCCCCeEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhcCCcceecCCCCcEEEecCCCCCCeEeec
Q psy2898 80 DRGGEVTYHGPGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANGPFSGAKIASI 159 (222)
Q Consensus 80 ~RGG~iTyHgPGQLv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~~~~~~KIasi 159 (222)
-|.|..++.-||+|.++.+++.+.. ...+..+.-...-+++++|+++|+++..+. +||||+ +++|||+|
T Consensus 41 GR~gr~W~Sp~G~l~~S~~l~~~~~-----~~~~~~l~~~~~~av~~~l~~~g~~~~iKW-PNDI~~-----~~kKi~GI 109 (236)
T PRK08330 41 GRKGRAWASPEGGLWMSVILKPKVS-----PEHLPKLVFLGALAVVDTLREFGIEGKIKW-PNDVLV-----NYKKIAGV 109 (236)
T ss_pred CCCCCeeeCCCCCeEEEEEEcCCCC-----HHHHHHHHHHHHHHHHHHHHHcCCCccccC-CCeEEE-----CCeEEEEE
Confidence 4778888888999999999875533 224555666677889999999999987765 899999 89999999
Q ss_pred ceeEeeCcEEEeceeeeecCCCCcCCcccCCCCCCCceeeccc-CCCCCCHHHHHHHHhcccc
Q psy2898 160 GLKISAKGYVYHGVSINVSMDLEPFNNINPCGYPGLVIVDMKK-LGINTTISKVQHLFIKNFF 221 (222)
Q Consensus 160 Gv~i~~~~vt~HG~alNv~~dL~~f~~I~pCGl~~~~vTSL~~-lg~~~~~~~v~~~l~~~f~ 221 (222)
.+... .+...||+.|||+++ .||++.+ .+|||.+ ++..++.+++...+.++|.
T Consensus 110 LiE~~-~~~~viGiGiNv~~~-------~p~~l~~-~atsL~~~~~~~~~~~~l~~~l~~~l~ 163 (236)
T PRK08330 110 LVEGK-GDFVVLGIGLNVNNE-------IPDELRE-TATSMKEVLGREVPLIEVFKRLVENLD 163 (236)
T ss_pred eEEEe-CCEEEEEEEEecCCC-------CCccccc-ccccHHHhhCCCCCHHHHHHHHHHHHH
Confidence 99998 889999999999985 3999876 6999987 7888999999998887763
No 18
>PF03099 BPL_LplA_LipB: Biotin/lipoate A/B protein ligase family This entry is just a subset of the Pfam family; InterPro: IPR004143 This domain is found in biotin protein ligase, lipoate-protein ligase A and B. Biotin is covalently attached at the active site of certain enzymes that transfer carbon dioxide from bicarbonate to organic acids to form cellular metabolites. Biotin protein ligase (BPL) is the enzyme responsible for attaching biotin to a specific lysine at the active site of biotin enzymes. Each organism probably has only one BPL. Biotin attachment is a two step reaction that results in the formation of an amide linkage between the carboxyl group of biotin and the epsilon-amino group of the modified lysine []. Lipoate-protein ligase A (LPLA) (octanoyltransferase) catalyses the formation of an amide linkage between lipoic acid and a specific lysine residue in lipoate dependent enzymes [].; GO: 0003824 catalytic activity, 0006464 protein modification process; PDB: 2ARU_A 2C8M_B 2C7I_A 3R07_A 2ARS_A 2ART_A 3FJP_A 3EFR_B 2EAY_B 3EFS_B ....
Probab=99.45 E-value=4.5e-13 Score=103.76 Aligned_cols=117 Identities=23% Similarity=0.333 Sum_probs=88.2
Q ss_pred eccCCCcc-cccccc--cCCCcCEEEeCcCCCceeeCCCCeEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHh---
Q psy2898 56 LGLKSNFS-HILISK--KLNNIPIIRTDRGGEVTYHGPGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMS--- 129 (222)
Q Consensus 56 ~Gr~~~~~-~ll~~~--~~~gi~v~~~~RGG~iTyHgPGQLv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~--- 129 (222)
+|++++.. ..++.. +..+++++++.+||+.+||+|++.+.|.++...... ......+..|+..+...+++.|.
T Consensus 1 ~g~~~~st~~~~~~~~~~~~~v~v~~rqtgG~~~w~~p~g~l~~s~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~ 79 (125)
T PF03099_consen 1 IGYFQDSTKEELNQEELKEGGVPVARRQTGGRRVWHSPPGNLYFSLILPPDDP-NFPPSDIPSYILLAALAVLEALGEFG 79 (125)
T ss_dssp EETTBSHHHHHHHHHHHHCTTEEEEEESSSSBEEEEBTTTEEEEEEEEETTTT-THHGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred CcCeECHHHHHHHHhcCccCCEEEEEEeeCCcceeeeCCcEEEEEEEEccccc-cccchhhhHHHHHHHHHHHHHhhhhc
Confidence 46666664 333322 246999999999999999997777777766553320 00124678888888888888883
Q ss_pred --hcCCcceecCCCCcEEEecCCCCCCeEeecceeEeeCcEEEeceeeeecCC
Q psy2898 130 --QYNINCKRKKNAPGVYIANGPFSGAKIASIGLKISAKGYVYHGVSINVSMD 180 (222)
Q Consensus 130 --~~gi~a~~~~~~~GVwv~~~~~~~~KIasiGv~i~~~~vt~HG~alNv~~d 180 (222)
..|+.+..+ .+++||+ +++|||+++++.+ ++..+|++++|++.|
T Consensus 80 ~~~~~~~~~~k-w~nDi~~-----~~kKi~Gil~~~~-~~~~~~~~~igig~N 125 (125)
T PF03099_consen 80 PGEPGIDCFIK-WPNDIYV-----NGKKIAGILQERR-RGGILHHGSIGIGIN 125 (125)
T ss_dssp HTTTTSSEEEE-TTTEEEE-----TTEEEEEEEEEEE-TTEEEEEEEEESSEE
T ss_pred cccCCCceEEe-CCCCccC-----CCcEEEEEeEeee-CCcEEEEEEEEEecC
Confidence 347777766 6899999 9999999999999 999999999999864
No 19
>KOG3159|consensus
Probab=98.98 E-value=7.2e-09 Score=92.64 Aligned_cols=175 Identities=17% Similarity=0.246 Sum_probs=118.6
Q ss_pred CceeEEEECCccchHHHHHHHHHHHHhhcCCCCCeEEEEecCCeeeeccCCCcccccccc--cCCCcCEEEeCcCCCcee
Q psy2898 10 YSNLQIIQRGLEPYIVSFNAMLLFNSNRTNYTIDQLWFVEHFPVYTLGLKSNFSHILISK--KLNNIPIIRTDRGGEVTY 87 (222)
Q Consensus 10 ~~~~~~~~lG~~~Y~~a~~~q~~~~~~~~~~~~d~lll~EH~Pv~T~Gr~~~~~~ll~~~--~~~gi~v~~~~RGG~iTy 87 (222)
.....+...---+|.- +++-.-+...........|||+...|++-+||++++-...+-. ..++|+++|+-.|||..|
T Consensus 8 k~~~V~~s~S~~~y~N-LAlE~~l~~~~~~~~~~~Ll~w~N~p~vVIGRhQNpw~E~nv~~~~e~~I~liRR~SGGGTVy 86 (336)
T KOG3159|consen 8 KGRFVLQSLSSDPYYN-LALENYLYRHKNGPDKHILLLWINDPCVVIGRHQNPWQEANVALLRENNIPLIRRFSGGGTVY 86 (336)
T ss_pred ccceEEEEecCchhhh-hHHHHHHHhhccCCCCeEEEEEeCCceEEEccCCCcceeccHHHHHhcCCeEEEEecCCceEE
Confidence 4445555554445532 2332223222445667889999999999999999975433222 235999999999999999
Q ss_pred eCCCCeEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHh--hcCCcceecCCCCcEEEecCCCCCCeEeecceeEee
Q psy2898 88 HGPGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMS--QYNINCKRKKNAPGVYIANGPFSGAKIASIGLKISA 165 (222)
Q Consensus 88 HgPGQLv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~--~~gi~a~~~~~~~GVwv~~~~~~~~KIasiGv~i~~ 165 (222)
|+=|.|....+.+=.++ +=.+... .++++|. ++++++.... +-++-+. .+++||++-..+|.
T Consensus 87 HDlGNLN~S~lt~re~~-------~r~~nlk----~iv~ALn~~e~~v~v~~nq-R~Di~l~---~g~rKiSGtA~kI~- 150 (336)
T KOG3159|consen 87 HDLGNLNYSLLTNREKF-------DRKENLK----IIVRALNGDEPFVKVNLNQ-RDDIVLD---FGQRKISGTAYKIA- 150 (336)
T ss_pred EecCceeEEEEccHHHc-------CcccchH----HHHHHhccCCceEeecccc-cccceec---ccCceeccchhhhc-
Confidence 99999999888544333 2222222 5566776 6777776444 3444331 26899999999999
Q ss_pred CcEEEeceeeeecCCCCcCCccc---CCCCCCCceeecc
Q psy2898 166 KGYVYHGVSINVSMDLEPFNNIN---PCGYPGLVIVDMK 201 (222)
Q Consensus 166 ~~vt~HG~alNv~~dL~~f~~I~---pCGl~~~~vTSL~ 201 (222)
++-.||=..+=++.|+..+.... +-|+......|..
T Consensus 151 r~raYHH~T~L~~aDl~~ls~lL~sp~~~~~s~at~sv~ 189 (336)
T KOG3159|consen 151 RNRAYHHCTMLLNADLENLSELLKSPRVNIRSKATSSVR 189 (336)
T ss_pred CCceeeeEEeEeccchHHHHhhccCCCCCcccccccccc
Confidence 99999999999999988765432 3456655555544
No 20
>PRK05935 biotin--protein ligase; Provisional
Probab=98.51 E-value=1.9e-06 Score=73.05 Aligned_cols=125 Identities=15% Similarity=0.122 Sum_probs=88.3
Q ss_pred CcCCCceeeCCCCeEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhcCCc-ceecCCCCcEEEecCCCCCCeEee
Q psy2898 80 DRGGEVTYHGPGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNIN-CKRKKNAPGVYIANGPFSGAKIAS 158 (222)
Q Consensus 80 ~RGG~iTyHgPGQLv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi~-a~~~~~~~GVwv~~~~~~~~KIas 158 (222)
-|.|..++.-||.|.+..++..+.. ..++......---++.++++.+++. ...+- +++||+ +++|||.
T Consensus 43 GR~GR~W~Sp~G~L~~Si~l~~~~~-----~~~~~~~~~l~~~av~~~l~~~~~~~~~iKW-PNDI~~-----~~kKi~G 111 (190)
T PRK05935 43 GKFGKSWHSSDQDLLASFCFFITVL-----NIDVSLLFRLGTEAVMRLGEDLGITEAVIKW-PNDVLV-----HGEKLCG 111 (190)
T ss_pred CCCCCeeeCCCCCeEEEEEEccCCC-----CcCHHHHHHHHHHHHHHHHHHhCCccccccC-CCeEEE-----CCcEEEE
Confidence 4778888999998888877755433 2333332221124788888888874 55555 899999 8999999
Q ss_pred cceeEe---eCcEEEeceeeeecCCCCcCCcccCCCCCCCceeeccc-CCCCCCHHHHHHHHhcccc
Q psy2898 159 IGLKIS---AKGYVYHGVSINVSMDLEPFNNINPCGYPGLVIVDMKK-LGINTTISKVQHLFIKNFF 221 (222)
Q Consensus 159 iGv~i~---~~~vt~HG~alNv~~dL~~f~~I~pCGl~~~~vTSL~~-lg~~~~~~~v~~~l~~~f~ 221 (222)
|=+... ......=|+.+|++.+.+.+. ++ ....|||.+ .+..++.+++...+.++|.
T Consensus 112 ILiE~~~~~~~~~vVIGIGINv~~~~~~~~-----~~-~~~atsL~~~~~~~~~~~~l~~~l~~~l~ 172 (190)
T PRK05935 112 VLCETIPVKGGLGVILGIGVNGNTTKDELL-----GI-DQPATSLQELLGHPIDLEEQRERLIKHIK 172 (190)
T ss_pred EEEeccccCCCcEEEEEEeEecCCCchhcc-----cc-CCCcccHHHhhCCCCCHHHHHHHHHHHHH
Confidence 966542 124578899999998654432 22 245899988 6889999999998887763
No 21
>COG0340 BirA Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]
Probab=98.25 E-value=6.1e-06 Score=72.23 Aligned_cols=125 Identities=19% Similarity=0.209 Sum_probs=92.9
Q ss_pred eCcCCCceeeCCC-CeEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhcCCcceecCCCCcEEEecCCCCCCeEe
Q psy2898 79 TDRGGEVTYHGPG-QAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANGPFSGAKIA 157 (222)
Q Consensus 79 ~~RGG~iTyHgPG-QLv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~~~~~~KIa 157 (222)
+-|.|..++.-|| +|.+..++..... ...+..+.-..--++.++|.++++++..+- +|+|++ +++|+|
T Consensus 34 RGR~GR~W~Sp~G~~l~~S~~l~~~~~-----~~~~~~lsl~~g~av~~al~~~~~~~~iKW-PNDv~~-----~~kKl~ 102 (238)
T COG0340 34 RGRRGRKWSSPKGGGLYMSLLLRPDLP-----PAELPSLSLVAGLAVAEALRKFGIDVRIKW-PNDVLL-----NGKKLA 102 (238)
T ss_pred cCCCCCcccCCCCCCEEEEEEEcCCcC-----hhhcchhHHHHHHHHHHHHHHhCcccCccC-CcceeE-----CCcceE
Confidence 3577888899997 8887777544432 112222333333389999999998888777 899999 999999
Q ss_pred ecceeEeeC----cEEEeceeeeecCCCCcCCcccCCCCCCCceeecccCCCCCCHHHHHHHHhccc
Q psy2898 158 SIGLKISAK----GYVYHGVSINVSMDLEPFNNINPCGYPGLVIVDMKKLGINTTISKVQHLFIKNF 220 (222)
Q Consensus 158 siGv~i~~~----~vt~HG~alNv~~dL~~f~~I~pCGl~~~~vTSL~~lg~~~~~~~v~~~l~~~f 220 (222)
.|=+..... ....-|+.+|+++....|. .+ +...|||.+....++.+++...+.++|
T Consensus 103 GIL~E~~~~~~~~~~~viGIGINv~~~~~~~~-----~i-~~~atsL~~~~~~~~r~~l~~~ll~~l 163 (238)
T COG0340 103 GILVEAVGDENGLLAVVVGIGINVNNPPPDFE-----DI-GQPATSLQEEGEEIDREELLAKLLKEL 163 (238)
T ss_pred EEEEeeeecCCCceEEEEEEEEeeccCCcchh-----hh-hhhhhhHHhhhCCCCHHHHHHHHHHHH
Confidence 998877622 3578899999999977663 22 357999999667899999988887755
No 22
>TIGR00121 birA_ligase birA, biotin-[acetyl-CoA-carboxylase] ligase region. The protein name suggests that this enzyme transfers biotin only to acetyl-CoA-carboxylase but it also transfers the biotin moiety to other proteins. The apparent orthologs among the eukaryotes are larger proteins that contain a single copy of this domain.
Probab=98.18 E-value=1.9e-05 Score=68.47 Aligned_cols=123 Identities=18% Similarity=0.208 Sum_probs=84.7
Q ss_pred CcCCCceeeCCCCeEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhcCCcceecCCCCcEEEecCCCCCCeEeec
Q psy2898 80 DRGGEVTYHGPGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANGPFSGAKIASI 159 (222)
Q Consensus 80 ~RGG~iTyHgPGQLv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~~~~~~KIasi 159 (222)
-|.|..++--||.|.+..++..+.. ......-.++-. -++.++|++++++...+- +++||+ +++|||+|
T Consensus 39 GR~gr~W~Sp~g~l~~S~~l~~~~~---~~~~~~ls~~~~--lAv~~al~~~~~~~~iKW-PNDI~~-----~~kKi~GI 107 (237)
T TIGR00121 39 GRRGRKWLSPEGGLYFSLILRPDLP---KSPAPGLTLVAG--IAIAEVLKELGDQVQVKW-PNDILL-----KDKKLGGI 107 (237)
T ss_pred CCCCCcccCCCCceEEEEEECCCCC---hhHhhhhHHHHH--HHHHHHHHHhCCCCCCcC-CceEEE-----CCeEEEEE
Confidence 4778888888887766666543321 001111223333 378899999987777666 899999 89999999
Q ss_pred ceeEeeC----cEEEeceeeeecCCCCcCCcccCCCCCCCceeeccc-CCCCCCHHHHHHHHhccc
Q psy2898 160 GLKISAK----GYVYHGVSINVSMDLEPFNNINPCGYPGLVIVDMKK-LGINTTISKVQHLFIKNF 220 (222)
Q Consensus 160 Gv~i~~~----~vt~HG~alNv~~dL~~f~~I~pCGl~~~~vTSL~~-lg~~~~~~~v~~~l~~~f 220 (222)
=+..... ....=|+.+|++++ .| |.++. ...|||.+ ++..++.+++...+.++|
T Consensus 108 L~E~~~~~~~~~~vviGIGiNv~~~--~~----~~~~~-~~a~sl~~~~~~~~~~~~ll~~l~~~l 166 (237)
T TIGR00121 108 LTELTGKENRADYVVIGIGINVQNR--KP----AESLR-EQAISLSEEAGIDLDRGELIEGFLRNF 166 (237)
T ss_pred EEEcccCCCCcCEEEEEEEEccCCC--CC----chhhc-ccceehHHhhCCCCCHHHHHHHHHHHH
Confidence 7664411 34788999999865 22 33443 46889987 788899999888887765
No 23
>PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional
Probab=97.99 E-value=7.8e-05 Score=67.32 Aligned_cols=124 Identities=21% Similarity=0.244 Sum_probs=85.2
Q ss_pred CcCCCceeeCCCC-eEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhcCC-cceecCCCCcEEEecCCCCCCeEe
Q psy2898 80 DRGGEVTYHGPGQ-AIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNI-NCKRKKNAPGVYIANGPFSGAKIA 157 (222)
Q Consensus 80 ~RGG~iTyHgPGQ-Lv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi-~a~~~~~~~GVwv~~~~~~~~KIa 157 (222)
-|.|..++--||. |.+..++..+... .....-.++.. -++.++|++++. +...+. +|+||+ +++|||
T Consensus 116 GR~gr~W~Sp~g~~L~~S~~~~~~~~~---~~~~~l~l~~~--~av~~al~~~~~~~~~iKW-PNDI~~-----~~kKl~ 184 (319)
T PRK11886 116 GRRGRQWFSPFGGNLYLSLYWRLNQGP---AQAMGLSLVVG--IAIAEALRRLGAIDVGLKW-PNDIYL-----NDRKLA 184 (319)
T ss_pred CCCCCcccCCCCCCEEEEEEeCCCCCh---HHHhhHHHHHH--HHHHHHHHHhcCCCcceeC-CceeeE-----CCeeEE
Confidence 6889888888895 8888886543210 01111123333 378889998865 566666 899999 899999
Q ss_pred ecceeEee----CcEEEeceeeeecCCCCcCCcccCCCCCCCceeecccCCCCCCHHHHHHHHhccc
Q psy2898 158 SIGLKISA----KGYVYHGVSINVSMDLEPFNNINPCGYPGLVIVDMKKLGINTTISKVQHLFIKNF 220 (222)
Q Consensus 158 siGv~i~~----~~vt~HG~alNv~~dL~~f~~I~pCGl~~~~vTSL~~lg~~~~~~~v~~~l~~~f 220 (222)
+|=+.... .....=|+.+|++++- | |..+.....|||.+++..++.+++...+.++|
T Consensus 185 GIL~E~~~~~~~~~~~viGIGiNv~~~~--~----~~~~~~~~~~sl~~~~~~~~~~~l~~~l~~~~ 245 (319)
T PRK11886 185 GILVELSGETGDAAHVVIGIGINVAMPD--F----PEELIDQPWSDLQEAGPTIDRNQLAAELIKQL 245 (319)
T ss_pred EEEEEeccCCCCccEEEEEEEEccCCCC--C----chhhhccceeeHhhcCCCCCHHHHHHHHHHHH
Confidence 98766431 1246789999998752 2 22222456799988888899999988887665
No 24
>PTZ00276 biotin/lipoate protein ligase; Provisional
Probab=97.93 E-value=9.2e-05 Score=64.89 Aligned_cols=123 Identities=15% Similarity=0.189 Sum_probs=78.5
Q ss_pred CcCCCceeeCCCCeEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhc--CCcceecCCCCcEEEecCCCCCCeEe
Q psy2898 80 DRGGEVTYHGPGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQY--NINCKRKKNAPGVYIANGPFSGAKIA 157 (222)
Q Consensus 80 ~RGG~iTyHgPGQLv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~--gi~a~~~~~~~GVwv~~~~~~~~KIa 157 (222)
-|.|..++.-||.|.+..++..+.. .......-.++..+ ++.++|+++ |++...+- +|+||+ ++||||
T Consensus 46 GR~gR~W~Sp~g~l~~S~~l~~~~~--~~~~~~~lsl~~al--av~~al~~~~~~~~~~iKW-PNDI~~-----~~kKia 115 (245)
T PTZ00276 46 GTGGRTWTSPKGNMYFTLCIPQKGV--PPELVPVLPLITGL--ACRAAIMEVLHGAAVHTKW-PNDIIY-----AGKKIG 115 (245)
T ss_pred CCCCCcccCCCCCeEEEEEECCCcc--ChhHhhHHHHHHHH--HHHHHHHHhccCCceEEEc-CCeeEE-----CCcEEE
Confidence 4667777788886666666532221 00001122233333 677788775 78888777 899999 899999
Q ss_pred ecceeEeeCcEEEeceeeeecCCCCcCCcccCCCCCCCcee---eccc-CC-CCCCHHHHHHHHhccc
Q psy2898 158 SIGLKISAKGYVYHGVSINVSMDLEPFNNINPCGYPGLVIV---DMKK-LG-INTTISKVQHLFIKNF 220 (222)
Q Consensus 158 siGv~i~~~~vt~HG~alNv~~dL~~f~~I~pCGl~~~~vT---SL~~-lg-~~~~~~~v~~~l~~~f 220 (222)
.|=+... .....=|+.+||+.+....... ...| |+.+ ++ .+++.+++...+.++|
T Consensus 116 GILiE~~-~~~vvIGIGINv~~~~~~~~~~-------~~~~~l~sl~~~~~~~~~~r~~l~~~ll~~~ 175 (245)
T PTZ00276 116 GSLIESE-GEYLIIGIGMNIEVAPPVTDAG-------RESTMVNEIAEDLGVKSVTPQDLAEAVWKHF 175 (245)
T ss_pred EEEEccc-CCEEEEEEEEeeCCCCCCCccc-------cccccHHHHHHhhCCCCCCHHHHHHHHHHHH
Confidence 9977766 4567899999998763211111 1344 4433 34 5688888888887776
No 25
>PTZ00275 biotin-acetyl-CoA-carboxylase ligase; Provisional
Probab=97.91 E-value=0.00014 Score=65.26 Aligned_cols=122 Identities=17% Similarity=0.148 Sum_probs=80.1
Q ss_pred CCCceeeCCCCeEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhcCCcceecCCCCcEEEecCCCCCCeEeecce
Q psy2898 82 GGEVTYHGPGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANGPFSGAKIASIGL 161 (222)
Q Consensus 82 GG~iTyHgPGQLv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~~~~~~KIasiGv 161 (222)
.|..++.-||.|.++.++..+... ......-.++..+ +++++|+.++++...+- +|+||+ +++|||.|=+
T Consensus 71 ~gR~W~Sp~G~L~~S~~l~~~~~~--~~~~~~Lsl~~al--Av~~~L~~~~~~~~IKW-PNDI~~-----~~kKiaGILi 140 (285)
T PTZ00275 71 QDRIWLSEKGNLFTTFVFLWNRND--IEKVKYLAQTCTV--AISKTLEYFHLVTQIKW-INDVLV-----NYKKIAGCLV 140 (285)
T ss_pred CCCEEECCCCceEEEEEEecCCcC--HhHhHHHHHHHHH--HHHHHHHHhCCceeEEC-CCcccc-----CCcEEEEEEE
Confidence 388888889988888876544320 0011111223333 78899999999887776 899999 8999999977
Q ss_pred eEee----------CcEEEeceeeeecCCCCcCCcccCCCCCCCceeeccc-CCCC-------CCHHHHHHHHhccc
Q psy2898 162 KISA----------KGYVYHGVSINVSMDLEPFNNINPCGYPGLVIVDMKK-LGIN-------TTISKVQHLFIKNF 220 (222)
Q Consensus 162 ~i~~----------~~vt~HG~alNv~~dL~~f~~I~pCGl~~~~vTSL~~-lg~~-------~~~~~v~~~l~~~f 220 (222)
.... .....=|+.|||+.. +| |..+ ....|||.+ .+.. ++.+++...+.++|
T Consensus 141 E~~~~~~~~~~~~~~~~vViGIGINvn~~--~~----~~~~-~~~atSL~~~~~~~~~~~~~~~~~~~ll~~ll~~l 210 (285)
T PTZ00275 141 HLYYLDDFPNLNSRYVCVMVGIGINVTLE--DK----HNLL-NNNYTSIKKELQRDFNTPKSIPSVEQVTEKLIINL 210 (285)
T ss_pred eeeeccccccccCceeEEEEEEEEecCCC--CC----cccc-cCCcccHHHHhCcccccccCCCCHHHHHHHHHHHH
Confidence 6531 134788999999863 33 1122 246789976 3433 45778777777655
No 26
>PRK08477 biotin--protein ligase; Provisional
Probab=97.73 E-value=0.00054 Score=59.00 Aligned_cols=113 Identities=11% Similarity=0.130 Sum_probs=74.7
Q ss_pred CcCCCceeeCCCCeEEEEeeecCcccccccCCcH--HHHHHHHHHHHHHHHhhcCCcceecCCCCcEEEecCCCCCCeEe
Q psy2898 80 DRGGEVTYHGPGQAIIYLLIDLRRRYSDNIKIYI--KKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANGPFSGAKIA 157 (222)
Q Consensus 80 ~RGG~iTyHgPGQLv~YpIl~L~~~~~~~~~~~~--~~~v~~Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~~~~~~KIa 157 (222)
-|.|..++--||.|.+..++..+.. ...... -.++.. -++.++++++|++...+- +|+||+ +++|||
T Consensus 41 GR~gR~W~Sp~G~L~~S~~l~~~~~---~~~~~~~~lsl~~~--~av~~~l~~~~~~~~iKW-PNDI~~-----~~kKi~ 109 (211)
T PRK08477 41 GSRGNSWEGKKGNLFFSFALKESDL---PKDLPLQSSSIYFG--FLLKEVLKELGSKVWLKW-PNDLYL-----DDKKIG 109 (211)
T ss_pred CCCCCcccCCCCCeEEEeecCCCcc---hhhhhhHHHHHHHH--HHHHHHHHHhCCCeEEcC-CCeeEE-----CCcEEE
Confidence 4667777777887766666543321 001111 112223 367888999998887776 899999 899999
Q ss_pred ecceeEeeCcEEEeceeeeecCCCCcCCcccCCCCCCCceeecccCCCCCCHHHHHHHHhccc
Q psy2898 158 SIGLKISAKGYVYHGVSINVSMDLEPFNNINPCGYPGLVIVDMKKLGINTTISKVQHLFIKNF 220 (222)
Q Consensus 158 siGv~i~~~~vt~HG~alNv~~dL~~f~~I~pCGl~~~~vTSL~~lg~~~~~~~v~~~l~~~f 220 (222)
.|=+... .....=|+.+||+..... .+| ++..++.+++...+.++|
T Consensus 110 GIL~E~~-~~~vviGiGiNv~~~p~~-------------~~~---l~~~~~~~~ll~~l~~~~ 155 (211)
T PRK08477 110 GVITNKI-KNFIVCGIGLNLKFSPKN-------------FAC---LDIEISDDLLLEGFLQKI 155 (211)
T ss_pred EEEEeec-CCeEEEEEEEeeCCCCCc-------------ccc---ccCcCCHHHHHHHHHHHH
Confidence 9988776 556788999999854221 133 355677777777776655
No 27
>PRK06955 biotin--protein ligase; Provisional
Probab=97.55 E-value=0.0012 Score=59.53 Aligned_cols=130 Identities=16% Similarity=0.154 Sum_probs=81.0
Q ss_pred eCcCCCceeeCCCC-eEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhc----CCcceecCCCCcEEEecCCCCC
Q psy2898 79 TDRGGEVTYHGPGQ-AIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQY----NINCKRKKNAPGVYIANGPFSG 153 (222)
Q Consensus 79 ~~RGG~iTyHgPGQ-Lv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~----gi~a~~~~~~~GVwv~~~~~~~ 153 (222)
+-|.|..++--||. |.+..++..+... .....-.++..+ ++.++|+++ +++...+- +|+||+ ++
T Consensus 77 RGR~GR~W~Sp~G~~L~~Si~l~~~~~~---~~~~~Lsl~~gl--Av~~al~~~~~~~~~~~~iKW-PNDIl~-----~g 145 (300)
T PRK06955 77 RGRQGRPWFAQPGNALLFSVACVLPRPV---AALAGLSLAVGV--ALAEALAALPAALGQRIALKW-PNDLLI-----AG 145 (300)
T ss_pred CCCCcCcccCCCCCcEEEEeEecCCCCh---HHhhhHHHHHHH--HHHHHHHHhhcccCCceeeeC-CceeeE-----CC
Confidence 36889999999995 7777776543210 011112233333 667788776 56677676 899999 89
Q ss_pred CeEeecceeEee----CcEEEeceeeeecCCCCcC-------CcccCCCCCCCceeecccCCCCCCHHHHHHHHhccc
Q psy2898 154 AKIASIGLKISA----KGYVYHGVSINVSMDLEPF-------NNINPCGYPGLVIVDMKKLGINTTISKVQHLFIKNF 220 (222)
Q Consensus 154 ~KIasiGv~i~~----~~vt~HG~alNv~~dL~~f-------~~I~pCGl~~~~vTSL~~lg~~~~~~~v~~~l~~~f 220 (222)
+|||+|=+.... .....=|+.+||+.+.+.- ....|.. .+...+++...+..++.+++...+.++|
T Consensus 146 kKiaGILiE~~~~~~~~~~vVIGIGINv~~~~~~~~~~~~l~~~~~~~~-~~~~~~~l~~~~~~~~~~~ll~~ll~~l 222 (300)
T PRK06955 146 RKLAGILIETVWATPDATAVVIGIGLNVRRADAVAAEVDALRAREAALA-RGLPPVALAAACAGANLTDTLAAALNAL 222 (300)
T ss_pred cEEEEEEEEcccCCCCccEEEEEEEEeeCCCcccccccccccccccccc-ccccchhhhhcCCCCCHHHHHHHHHHHH
Confidence 999999766431 1346889999998653200 0011111 1233556655677888888887777655
No 28
>PRK13325 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed
Probab=97.09 E-value=0.0051 Score=60.50 Aligned_cols=122 Identities=13% Similarity=0.129 Sum_probs=79.4
Q ss_pred eCcCCCceeeCCCC-eEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhcCCcceecCCCCcEEEecCCCCCCeEe
Q psy2898 79 TDRGGEVTYHGPGQ-AIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANGPFSGAKIA 157 (222)
Q Consensus 79 ~~RGG~iTyHgPGQ-Lv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~~~~~~KIa 157 (222)
+-|.|..++.-||. |.+..++..+... .....-.++-.+ ++.++|+++|++...+. +|+||+ ++||||
T Consensus 122 RGRrGR~W~Sp~G~~Ly~S~~l~~~~~~---~~~~~Lsl~vgv--Av~~aL~~~g~~v~lKW-PNDIl~-----~gkKla 190 (592)
T PRK13325 122 RGRQGRKWSHRLGECLMFSFGWVFDRPQ---YELGSLSPVAAV--ACRRALSRLGLKTQIKW-PNDLVV-----GRDKLG 190 (592)
T ss_pred CCCCCCcccCCCCCcEEEEeeecCCCCh---hhhhhHHHHHHH--HHHHHHHHcCCCceEeC-cceEEE-----CCceEE
Confidence 36889999888995 8877776543210 011111233333 78899999999877776 899999 899999
Q ss_pred ecceeEee---CcEEEeceeeeecCCCCcCCcccCCCCC-CCceeeccc-CC--CCCCHHHHHHHHhccc
Q psy2898 158 SIGLKISA---KGYVYHGVSINVSMDLEPFNNINPCGYP-GLVIVDMKK-LG--INTTISKVQHLFIKNF 220 (222)
Q Consensus 158 siGv~i~~---~~vt~HG~alNv~~dL~~f~~I~pCGl~-~~~vTSL~~-lg--~~~~~~~v~~~l~~~f 220 (222)
.|=+.... .....=|+.|||++. ..+. ....|||.+ .+ ..++.+++...+.++|
T Consensus 191 GILiE~~~~~~~~~vVIGIGINv~~p---------~~~~~~~~~~sL~~~~~~~~~~dr~~ll~~ll~~l 251 (592)
T PRK13325 191 GILIETVRTGGKTVAVVGIGINFVLP---------KEVENAASVQSLFQTASRRGNADAAVLLETLLAEL 251 (592)
T ss_pred EEEEeeeecCCCcEEEEEEEEeeCCC---------cccccCcChHHHHhhhccCCCCCHHHHHHHHHHHH
Confidence 99777541 123678999999732 2222 234456654 22 3577777777666654
No 29
>KOG0325|consensus
Probab=93.87 E-value=0.051 Score=47.06 Aligned_cols=31 Identities=23% Similarity=0.235 Sum_probs=28.0
Q ss_pred CcCEEEeCcCCCceeeCCCCeEEEEeeecCcc
Q psy2898 73 NIPIIRTDRGGEVTYHGPGQAIIYLLIDLRRR 104 (222)
Q Consensus 73 gi~v~~~~RGG~iTyHgPGQLv~YpIl~L~~~ 104 (222)
.+.++.+.+|+.||||| ++|++||.+.+.++
T Consensus 143 k~aaiGi~vsr~IT~HG-laLN~~tDL~~fnh 173 (226)
T KOG0325|consen 143 KIAAIGIRVSREITYHG-LALNVNTDLTYFNH 173 (226)
T ss_pred eeEEEEEEecCcEeecc-eEEEeccCcchhhc
Confidence 68899999999999999 99999999877654
No 30
>PF04017 DUF366: Domain of unknown function (DUF366); InterPro: IPR007162 This is an archaeal family of unknown function.; PDB: 2DDZ_E.
Probab=90.42 E-value=1.4 Score=37.25 Aligned_cols=80 Identities=19% Similarity=0.378 Sum_probs=42.8
Q ss_pred HHHHHHHHHhhcCCcceecCCCCcEEEecCCCCCCeEeecceeEeeCcEEEeceeeeecCCCCcCCcccCCCCCCCceee
Q psy2898 120 IEEAVILTMSQYNINCKRKKNAPGVYIANGPFSGAKIASIGLKISAKGYVYHGVSINVSMDLEPFNNINPCGYPGLVIVD 199 (222)
Q Consensus 120 Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~~~~~~KIasiGv~i~~~~vt~HG~alNv~~dL~~f~~I~pCGl~~~~vTS 199 (222)
|-..+.+.|.++|++..|.- .++|+ +++|+. +-++...---+.==+++||+.+- .+ ....+
T Consensus 87 lv~i~kE~L~~~gv~~~R~G--DDLy~-----~~~KLS-VSIAt~s~vS~kIH~GiNV~~~g----------~p-V~aig 147 (183)
T PF04017_consen 87 LVAIIKEVLEEYGVKLRREG--DDLYV-----NGRKLS-VSIATASPVSTKIHFGINVSSEG----------TP-VPAIG 147 (183)
T ss_dssp HHHHHHHHHHTTT--EEEET--TEEEE-----TTEE-E-EEEEEEETTEEEEEEEEESS-TT-------------S-B--
T ss_pred HHHHHHHHHHhcCCceeecc--cceeE-----CCCEEE-EEEEecCcchheEEEeEeecccC----------cc-ccccC
Confidence 44566788889999977653 79999 888863 33444423333344889999983 33 45666
Q ss_pred cccCCCCCCHHHHHHHHhcc
Q psy2898 200 MKKLGINTTISKVQHLFIKN 219 (222)
Q Consensus 200 L~~lg~~~~~~~v~~~l~~~ 219 (222)
|.++|.. +.+++.+.+.++
T Consensus 148 L~dlgi~-~~~~~~~~i~~~ 166 (183)
T PF04017_consen 148 LEDLGIE-DIDELMERIAKR 166 (183)
T ss_dssp TTTTT---HH-HHHHHHHHH
T ss_pred HHHcCCc-cHHHHHHHHHHH
Confidence 7777754 222444444443
No 31
>COG2029 Uncharacterized conserved protein [Function unknown]
Probab=87.20 E-value=3.6 Score=34.52 Aligned_cols=81 Identities=15% Similarity=0.336 Sum_probs=51.9
Q ss_pred HHHHHHHHHhhcCCcceecCCCCcEEEecCCCCCCeEeecceeEeeCcEEEe-ceeeeecCCCCcCCcccCCCCCCCcee
Q psy2898 120 IEEAVILTMSQYNINCKRKKNAPGVYIANGPFSGAKIASIGLKISAKGYVYH-GVSINVSMDLEPFNNINPCGYPGLVIV 198 (222)
Q Consensus 120 Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~~~~~~KIasiGv~i~~~~vt~H-G~alNv~~dL~~f~~I~pCGl~~~~vT 198 (222)
|-..+.+.|..+|+.+.|. -.++|+ ++||+. +-++.. ..+++- =+.+||+.. |.++....
T Consensus 90 lv~i~~E~l~~~gv~~~Re--GDDly~-----~grKLt-VsIat~-s~vs~kiHlGiNV~t~----------g~p~V~~i 150 (189)
T COG2029 90 LVAILKEVLEKLGVDLSRE--GDDLYV-----EGRKLT-VSIATV-SPVSSKIHLGINVKTE----------GVPDVDAI 150 (189)
T ss_pred HHHHHHHHHHHhCCccccc--CCceee-----cCcEEE-EEEEec-CCcceeEEEeEeeecc----------cCCCCCcc
Confidence 3345667778899998755 378999 888874 223333 333221 167888876 66677788
Q ss_pred ecccCCCCCCHHHHHHHHhccc
Q psy2898 199 DMKKLGINTTISKVQHLFIKNF 220 (222)
Q Consensus 199 SL~~lg~~~~~~~v~~~l~~~f 220 (222)
+|.++|. .++.++.+.++.+|
T Consensus 151 gL~dlg~-~Di~~~m~~va~~y 171 (189)
T COG2029 151 GLEDLGY-GDILEFMERVAVAY 171 (189)
T ss_pred cccccCC-CCHHHHHHHHHHHH
Confidence 8888885 45555555555443
No 32
>KOG1536|consensus
Probab=79.21 E-value=13 Score=36.68 Aligned_cols=98 Identities=24% Similarity=0.321 Sum_probs=62.8
Q ss_pred cCEEEeCcCCCceeeCCCCeEEEEeeecCcccccccCCcHHHHHHHHHHH-HHHHHhh---c-CCcceecCCCCcEEEec
Q psy2898 74 IPIIRTDRGGEVTYHGPGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEA-VILTMSQ---Y-NINCKRKKNAPGVYIAN 148 (222)
Q Consensus 74 i~v~~~~RGG~iTyHgPGQLv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~-vi~~L~~---~-gi~a~~~~~~~GVwv~~ 148 (222)
+.+--+.|||.++.---|-+...+++..+... ....+-.|+..|.-+ +.+++.. | .|+.+.+. ++++|+
T Consensus 420 ~Q~sGRGRGgN~WlsP~G~~~~sf~ism~~ks---r~~~~i~~~~~l~~~~~v~~~~~~pGy~dIpvrIKW-PNDlY~-- 493 (649)
T KOG1536|consen 420 IQTSGRGRGGNVWLSPKGCAMSSFTISMPLKS---RVVPLIPFVQHLALVAVVEAVRYAPGYPDIPVRIKW-PNDLYV-- 493 (649)
T ss_pred EEeecccCCCCeeecCcceEeEEEEEEeeccc---ccccchHHHHHHHHHHHHHHHhcCCCCCCCceeeec-Ccccee--
Confidence 33444589999988888999999998887541 133445555544322 2233322 1 46677666 799999
Q ss_pred CCCCC-CeEeecceeEe---eCcEEEeceeeeecCC
Q psy2898 149 GPFSG-AKIASIGLKIS---AKGYVYHGVSINVSMD 180 (222)
Q Consensus 149 ~~~~~-~KIasiGv~i~---~~~vt~HG~alNv~~d 180 (222)
.+ -||+.|=+... ++.-..-|..+||++|
T Consensus 494 ---~~~lKvgGiLv~st~r~n~f~v~iGCGiNVtN~ 526 (649)
T KOG1536|consen 494 ---NGYLKVGGILVTSTYRSNKFNVSIGCGINVTND 526 (649)
T ss_pred ---eeccccceEEEEeeecCceEEEEEeeeeEecCC
Confidence 44 89988866544 3344556777787776
No 33
>KOG2414|consensus
Probab=59.44 E-value=44 Score=32.04 Aligned_cols=117 Identities=19% Similarity=0.288 Sum_probs=69.3
Q ss_pred ecCCeeeeccCCCccccccccc-CCCcCEEEeCcCCCceeeCCC--CeEEEEe---------------eecCcc-cc---
Q psy2898 49 EHFPVYTLGLKSNFSHILISKK-LNNIPIIRTDRGGEVTYHGPG--QAIIYLL---------------IDLRRR-YS--- 106 (222)
Q Consensus 49 EH~Pv~T~Gr~~~~~~ll~~~~-~~gi~v~~~~RGG~iTyHgPG--QLv~YpI---------------l~L~~~-~~--- 106 (222)
-.|||+.-|.++..-|.+...+ ...=+.|-+|-||+. ||-= =-=.||+ +.+++. +.
T Consensus 281 AYpPVVAgG~na~tIHY~~Nnq~l~d~emVLvDaGcel--gGYvSDITRTWP~sGkFs~~Qr~LYeavL~vq~ecik~c~ 358 (488)
T KOG2414|consen 281 AYPPVVAGGKNANTIHYVRNNQLLKDDEMVLVDAGCEL--GGYVSDITRTWPISGKFSDAQRDLYEAVLQVQEECIKYCK 358 (488)
T ss_pred ccCCeeecCcccceEEEeecccccCCCcEEEEecCccc--CceEccceeccCCCCccCcHHHHHHHHHHHHHHHHHHhhc
Confidence 3689999999998766554432 233478888888763 2210 0001222 000000 00
Q ss_pred cccCCcHHHHHHHHHHHHHHHHhhcCCcceecC-----------------------------------C-----CCcEEE
Q psy2898 107 DNIKIYIKKLVENIEEAVILTMSQYNINCKRKK-----------------------------------N-----APGVYI 146 (222)
Q Consensus 107 ~~~~~~~~~~v~~Le~~vi~~L~~~gi~a~~~~-----------------------------------~-----~~GVwv 146 (222)
...+.++.+....-.+.+-+-|+++||....++ + .|||||
T Consensus 359 ~~~g~sL~~l~~~s~~Ll~~~Lk~lGI~kt~~ee~~~~~klcPHhVgHyLGmDVHD~p~v~r~~pL~pg~ViTIEPGvYI 438 (488)
T KOG2414|consen 359 PSNGTSLSQLFERSNELLGQELKELGIRKTDREEMIQAEKLCPHHVGHYLGMDVHDCPTVSRDIPLQPGMVITIEPGVYI 438 (488)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHhCcccchHHHHHhhhhcCCcccchhcCcccccCCCCCCCccCCCCceEEecCceec
Confidence 000567888777778888888999998643321 1 368888
Q ss_pred ecCCCCCCeEeecceeEeeCcE
Q psy2898 147 ANGPFSGAKIASIGLKISAKGY 168 (222)
Q Consensus 147 ~~~~~~~~KIasiGv~i~~~~v 168 (222)
..+.+...+.=.||+||. +.|
T Consensus 439 P~d~d~P~~FrGIGiRIE-DDV 459 (488)
T KOG2414|consen 439 PEDDDPPEEFRGIGIRIE-DDV 459 (488)
T ss_pred CccCCCchHhcCceEEee-cce
Confidence 554445688888999998 554
No 34
>PF13823 ADH_N_assoc: Alcohol dehydrogenase GroES-associated; PDB: 2DPH_B.
Probab=57.33 E-value=5.6 Score=22.45 Aligned_cols=11 Identities=45% Similarity=0.969 Sum_probs=9.0
Q ss_pred ceeeCCCCeEE
Q psy2898 85 VTYHGPGQAII 95 (222)
Q Consensus 85 iTyHgPGQLv~ 95 (222)
++||||++.-+
T Consensus 4 v~y~G~~~v~v 14 (23)
T PF13823_consen 4 VVYHGPKDVRV 14 (23)
T ss_dssp EEEEETTEEEE
T ss_pred eEEeCCCceEE
Confidence 68999998754
No 35
>PHA03222 single-stranded binding protein UL29; Provisional
Probab=30.85 E-value=1.2e+02 Score=28.02 Aligned_cols=107 Identities=13% Similarity=0.085 Sum_probs=61.3
Q ss_pred CceeEEEECCccchHHHHHHHHHHHHhhcCCCCCeEEEEecCCeeeeccCCCcccccccccCCCcCEEEeCcCCCceeeC
Q psy2898 10 YSNLQIIQRGLEPYIVSFNAMLLFNSNRTNYTIDQLWFVEHFPVYTLGLKSNFSHILISKKLNNIPIIRTDRGGEVTYHG 89 (222)
Q Consensus 10 ~~~~~~~~lG~~~Y~~a~~~q~~~~~~~~~~~~d~lll~EH~Pv~T~Gr~~~~~~ll~~~~~~gi~v~~~~RGG~iTyHg 89 (222)
...+++.+---+-|.... ++++.+. ....| |+.-+|--...+..+... .+++. ...+|-|-||.
T Consensus 218 ~~~L~L~~~~~l~~~~~~--lrr~q~~--------~~~~e--pv~vLGvi~~~~~k~~~~---~~~Il-cg~sG~VY~~~ 281 (337)
T PHA03222 218 NHHLLVANAQDLELSAIA--IRRFQRF--------LYGRE--PILALGEIEGEEGKTFFN---HVKIF-CGDSGAVYAAL 281 (337)
T ss_pred cceEEEecccccCccHHH--Hhhhhhc--------ccccC--ceEEEEEEccCCcccccC---CceEE-EcCCceEEEEE
Confidence 445566554444554443 3333221 22233 666666554443333222 34444 48899999999
Q ss_pred CCCeEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhcCCcceecCCCCcEEE
Q psy2898 90 PGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYI 146 (222)
Q Consensus 90 PGQLv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi~a~~~~~~~GVwv 146 (222)
+||-+.+-| ..+++.|++ .-+.+.+.+||.+.--.-++.-+|-
T Consensus 282 ~g~erL~ri-----------Ad~L~tF~R---vGLarl~~D~~Ye~IG~v~~~~l~e 324 (337)
T PHA03222 282 VGHDKLTKI-----------ARDLKAFVR---IGLALLIDDFRYENIGPIDHHSLHE 324 (337)
T ss_pred ecCceeehH-----------HHHHHHHHH---HHHHHHhcccccccccccccchhhh
Confidence 999888776 346778877 3556677888876433333444543
No 36
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=28.00 E-value=25 Score=28.67 Aligned_cols=17 Identities=24% Similarity=0.557 Sum_probs=14.1
Q ss_pred CCCCeEEEEecCCeeee
Q psy2898 40 YTIDQLWFVEHFPVYTL 56 (222)
Q Consensus 40 ~~~d~lll~EH~Pv~T~ 56 (222)
++++.+||+||.|.|-.
T Consensus 70 dSpNFlWFrErYe~F~Y 86 (167)
T COG3818 70 DSPNFLWFRERYENFFY 86 (167)
T ss_pred CCCceeehhhhCCceEE
Confidence 57899999999997753
No 37
>COG3052 CitD Citrate lyase, gamma subunit [Energy production and conversion]
Probab=27.78 E-value=69 Score=24.27 Aligned_cols=23 Identities=13% Similarity=0.330 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCcce
Q psy2898 114 KKLVENIEEAVILTMSQYNINCK 136 (222)
Q Consensus 114 ~~~v~~Le~~vi~~L~~~gi~a~ 136 (222)
++|=+.+|+.+.++|+.||+++.
T Consensus 39 kQFG~~I~~tV~~~La~l~V~~A 61 (98)
T COG3052 39 KQFGDAIRQTVLEVLARLGVRGA 61 (98)
T ss_pred HHHHHHHHHHHHHHHHHhCcccc
Confidence 46889999999999999999853
No 38
>PF03396 Pox_RNA_pol_35: Poxvirus DNA-directed RNA polymerase, 35 kD subunit; InterPro: IPR005059 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. The DNA-dependent RNA polymerase from vaccinia virions has a molecular weight of approximately 500 kDa and can be dissociated into putative subunits of 140, 137, 37, 35, 31, 22, and 17 kDa. This group represents a DNA-directed RNA polymerase, 35 kDa subunit.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0019083 viral transcription
Probab=27.39 E-value=1.1e+02 Score=27.73 Aligned_cols=60 Identities=18% Similarity=0.381 Sum_probs=47.5
Q ss_pred CcCEEEeCcCCCceeeCCCCeEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhcCCcceecCCCCcE
Q psy2898 73 NIPIIRTDRGGEVTYHGPGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGV 144 (222)
Q Consensus 73 gi~v~~~~RGG~iTyHgPGQLv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi~a~~~~~~~GV 144 (222)
-+|+.-+--+|..|+.-. .||-+|.+++ +++.++.||+.+++=.+++.|......+..++
T Consensus 179 ~~PfiviAP~G~Ltff~e----~Y~W~D~k~~--------~k~~l~~Le~~lv~di~sh~i~~~~~~d~~~~ 238 (292)
T PF03396_consen 179 YVPFIVIAPRGRLTFFIE----SYSWFDFKSH--------LKDILDFLEGKLVSDIHSHKIETSDEKDNENV 238 (292)
T ss_pred eccEEEEccCceEEEEEe----ecceechHHH--------HHHHHHHHHHHHHHHHHhheeecccccCCCCc
Confidence 368888888889988744 7999999876 89999999999999999998876533334444
No 39
>KOG0109|consensus
Probab=27.06 E-value=60 Score=29.79 Aligned_cols=50 Identities=32% Similarity=0.429 Sum_probs=33.8
Q ss_pred HHHhhcC--CcceecCCCCcEEEecCCCCCCeEeecceeEeeCcEEEeceeeeecCCC
Q psy2898 126 LTMSQYN--INCKRKKNAPGVYIANGPFSGAKIASIGLKISAKGYVYHGVSINVSMDL 181 (222)
Q Consensus 126 ~~L~~~g--i~a~~~~~~~GVwv~~~~~~~~KIasiGv~i~~~~vt~HG~alNv~~dL 181 (222)
.+...|| +++...+..-=|.+ +++..|-..++=- ++.|+||+.+||...-
T Consensus 21 ~lFe~ygkVlECDIvKNYgFVHi-----EdktaaedairNL-hgYtLhg~nInVeaSk 72 (346)
T KOG0109|consen 21 SLFEQYGKVLECDIVKNYGFVHI-----EDKTAAEDAIRNL-HGYTLHGVNINVEASK 72 (346)
T ss_pred HHHHhhCceEeeeeecccceEEe-----ecccccHHHHhhc-ccceecceEEEEEecc
Confidence 3445666 34554543333455 6777777877766 8999999999998653
No 40
>PF09322 DUF1979: Domain of unknown function (DUF1979); InterPro: IPR015401 This N-terminal domain is functionally uncharacterised and found in various Oryza sativa (Rice) mutator-like transposases.
Probab=23.72 E-value=59 Score=22.23 Aligned_cols=11 Identities=36% Similarity=0.594 Sum_probs=7.9
Q ss_pred eeeCCCCeEEE
Q psy2898 86 TYHGPGQAIIY 96 (222)
Q Consensus 86 TyHgPGQLv~Y 96 (222)
.|||||.+-.=
T Consensus 9 ~~hg~GNvR~G 19 (58)
T PF09322_consen 9 IYHGEGNVRYG 19 (58)
T ss_pred EEEcCCceeEC
Confidence 48999887543
No 41
>PF06378 DUF1071: Protein of unknown function (DUF1071); InterPro: IPR009425 This entry is represented by Bacteriophage bIL285, Orf14. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical bacterial and phage proteins of unknown function.
Probab=22.22 E-value=4.6e+02 Score=21.82 Aligned_cols=48 Identities=15% Similarity=0.203 Sum_probs=31.1
Q ss_pred CceeeCCCCeEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhcCC
Q psy2898 84 EVTYHGPGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNI 133 (222)
Q Consensus 84 ~iTyHgPGQLv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi 133 (222)
.+|..|--.--.+|++|-++. .-.+.+..+.=..+.++++++|+-|||
T Consensus 74 ~vti~g~t~~~~lPVMD~rNk--~i~~p~~~dINka~~RclVKalA~~GL 121 (164)
T PF06378_consen 74 SVTIEGQTYTMWLPVMDGRNK--AIEKPTAFDINKAIMRCLVKALAMFGL 121 (164)
T ss_pred EEEECCEEEEEEEeecCCCCC--cccCcchhhhHHHHHHHHHHHHHHhCc
Confidence 356666656778899887654 112345555566677777778877765
No 42
>PRK00407 hypothetical protein; Provisional
Probab=21.71 E-value=67 Score=25.71 Aligned_cols=17 Identities=29% Similarity=0.634 Sum_probs=15.1
Q ss_pred ceeeC------CCCeEEEEeeec
Q psy2898 85 VTYHG------PGQAIIYLLIDL 101 (222)
Q Consensus 85 iTyHg------PGQLv~YpIl~L 101 (222)
+|||+ .|...++.|+|+
T Consensus 117 vTyh~l~i~~~~~~~~~~vi~Di 139 (139)
T PRK00407 117 MTYHDMEIEKEDGCWMAQFVVDI 139 (139)
T ss_pred eecccEEEEEcCCeEEEEEEEeC
Confidence 68988 999999999985
No 43
>PF11281 DUF3083: Protein of unknown function (DUF3083); InterPro: IPR021433 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=21.64 E-value=2e+02 Score=26.45 Aligned_cols=42 Identities=14% Similarity=0.275 Sum_probs=31.7
Q ss_pred EEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhcCCcceec
Q psy2898 95 IYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRK 138 (222)
Q Consensus 95 ~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi~a~~~ 138 (222)
+|+++-.... +....+.-+|++.+|+++-..+.+++|+.++.
T Consensus 262 ~~fvi~A~~~--d~~~~gyGrFmNqvE~Al~~~~~el~i~~er~ 303 (316)
T PF11281_consen 262 VHFVIVAGKQ--DKTDHGYGRFMNQVEDALRSFADELDIDKERQ 303 (316)
T ss_pred EEEEEEecCc--ccccccHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 5666655433 22345788999999999999999999988754
No 44
>PRK05761 DNA polymerase I; Reviewed
Probab=21.60 E-value=1.8e+02 Score=29.93 Aligned_cols=47 Identities=23% Similarity=0.390 Sum_probs=36.0
Q ss_pred CCCCeEEEEeeecCcc---c--ccccCCcHHHHHHHHHHHHHHHHhhcCCcc
Q psy2898 89 GPGQAIIYLLIDLRRR---Y--SDNIKIYIKKLVENIEEAVILTMSQYNINC 135 (222)
Q Consensus 89 gPGQLv~YpIl~L~~~---~--~~~~~~~~~~~v~~Le~~vi~~L~~~gi~a 135 (222)
+||+-|.|.|++-... . ..+...|...|++.|..++-++|.-||++-
T Consensus 721 ~~Gd~I~YVi~~~~~~~~p~~~~~~~~iD~~yYi~~l~~~~~~il~~~g~~~ 772 (787)
T PRK05761 721 SPGDIISYVKVDDKRGVKPVQLAKLSEIDVEKYIELLRSALEQILSALGVSW 772 (787)
T ss_pred CCCCEEEEEEEcCCCCCChhhhcccCCcCHHHHHHHHHHHHHHHHHHhCCCH
Confidence 5888888888865321 0 012367999999999999999999999974
No 45
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=21.14 E-value=1.2e+02 Score=24.79 Aligned_cols=31 Identities=10% Similarity=0.244 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhhcCCc-ceecCCCCcEEEe
Q psy2898 117 VENIEEAVILTMSQYNIN-CKRKKNAPGVYIA 147 (222)
Q Consensus 117 v~~Le~~vi~~L~~~gi~-a~~~~~~~GVwv~ 147 (222)
..++|+.+.++++.||++ ++....+++|.+.
T Consensus 12 ~~rve~~~~ria~~~G~~~~~~~v~~t~i~is 43 (193)
T PF06738_consen 12 TYRVEDTMQRIARALGLEDVEVFVTPTGIFIS 43 (193)
T ss_pred HHHHHHHHHHHHHHcCCCeeEEEEecCEEEEE
Confidence 678999999999999999 7777778898883
No 46
>TIGR01608 citD citrate lyase acyl carrier protein. This is a model of the acyl carrier protein (aka gamma subunit) of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The acyl carrier protein covalently binds the coenzyme of citrate lyase. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=21.00 E-value=1.2e+02 Score=22.95 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=21.9
Q ss_pred cHHHHHHHHHHHHHHHHhhcCCcce
Q psy2898 112 YIKKLVENIEEAVILTMSQYNINCK 136 (222)
Q Consensus 112 ~~~~~v~~Le~~vi~~L~~~gi~a~ 136 (222)
-.++|=+.+++++-++|+++|++..
T Consensus 37 V~kQfG~~Ir~~v~etL~~lgV~~~ 61 (92)
T TIGR01608 37 VKKQFGDDIESTVKETLKLLGVENA 61 (92)
T ss_pred HHHHHhHHHHHHHHHHHHHcCCceE
Confidence 4678999999999999999999853
Done!