Query psy2898
Match_columns 222
No_of_seqs 144 out of 1047
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 20:24:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2898.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2898hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w66_A Lipoyltransferase; lipo 100.0 2.7E-64 9.3E-69 435.6 19.5 201 5-221 6-210 (232)
2 2qhs_A Lipoyltransferase; glob 100.0 4E-55 1.4E-59 378.9 19.5 198 10-221 20-222 (237)
3 2p5i_A BH3822 protein; PFAM030 100.0 4.7E-39 1.6E-43 284.9 14.4 199 11-221 13-244 (288)
4 2c8m_A Lipoate-protein ligase 100.0 1.2E-38 4.2E-43 278.3 16.0 195 12-221 3-219 (262)
5 2p0l_A Lipoate-protein ligase 100.0 2.7E-38 9.4E-43 280.1 16.5 200 10-221 10-243 (288)
6 1vqz_A Lipoate-protein ligase, 100.0 5.9E-37 2E-41 277.6 16.9 194 12-221 12-218 (341)
7 3a7r_A Lipoate-protein ligase 100.0 6.1E-35 2.1E-39 263.8 15.4 194 12-221 2-208 (337)
8 2e5a_A Lipoyltransferase 1; li 100.0 1.3E-33 4.4E-38 256.0 14.8 185 19-221 11-210 (347)
9 2dxu_A Biotin--[acetyl-COA-car 98.4 1.4E-06 4.7E-11 74.6 9.9 117 80-220 47-164 (235)
10 2eay_A Biotin [acetyl-COA-carb 98.3 3.7E-06 1.3E-10 71.7 11.1 122 79-220 38-161 (233)
11 3rkx_A Biotin-[acetyl-COA-carb 98.2 8.3E-06 2.8E-10 72.8 11.3 125 80-220 121-252 (323)
12 3rux_A BIRA bifunctional prote 98.2 5.6E-06 1.9E-10 72.2 9.8 122 80-220 72-198 (270)
13 2ej9_A Putative biotin ligase; 98.2 3.8E-06 1.3E-10 71.8 8.3 119 80-220 39-163 (237)
14 1bia_A BIRA bifunctional prote 98.1 2E-05 6.9E-10 69.9 11.9 124 80-220 117-246 (321)
15 3bfm_A Biotin protein ligase-l 97.7 0.00019 6.4E-09 61.0 9.8 112 90-220 45-167 (235)
16 2ddz_A 190AA long hypothetical 92.3 0.38 1.3E-05 39.6 7.1 81 120-220 91-172 (190)
17 2iru_A Putative DNA ligase-lik 25.7 1.5E+02 0.0052 25.8 6.5 59 83-146 109-182 (303)
18 2bps_A YUKD protein; ubiquitin 20.8 43 0.0015 23.5 1.7 41 171-221 1-41 (81)
No 1
>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} SCOP: d.104.1.3
Probab=100.00 E-value=2.7e-64 Score=435.57 Aligned_cols=201 Identities=29% Similarity=0.524 Sum_probs=188.0
Q ss_pred eccCCCceeEEEECCccchHHHHHHHHHHHHhhcCCCCCeEEEEecCCeeeeccCCCcccccccccCCCcCEEEeCcCCC
Q psy2898 5 SISSTYSNLQIIQRGLEPYIVSFNAMLLFNSNRTNYTIDQLWFVEHFPVYTLGLKSNFSHILISKKLNNIPIIRTDRGGE 84 (222)
Q Consensus 5 ~~~~~~~~~~~~~lG~~~Y~~a~~~q~~~~~~~~~~~~d~lll~EH~Pv~T~Gr~~~~~~ll~~~~~~gi~v~~~~RGG~ 84 (222)
++......+.++++|++||+++|++|+.+++.+....+|+|||+|||||||+|++++.++++.. +|||++++|||+
T Consensus 6 ~~~~~~~~~~~~~lg~~~Y~~a~~~q~~l~~~~~~~~~d~l~l~eh~pv~TiG~~q~~~~l~~~----gi~Vvr~~rGG~ 81 (232)
T 1w66_A 6 SIRSKLSAIDVRQLGTVDYRTAWQLQRELADARVAGGADTLLLLEHPAVYTAGRRTETHERPID----GTPVVDTDRGGK 81 (232)
T ss_dssp CCBSCCSCCEEEEEEECCHHHHHHHHHHHHHHHHTTCCCEEEEEECCSEEEECTTCCGGGSCTT----CCCCEECSSSSS
T ss_pred cccccCceEEEEeCCCcCHHHHHHHHHHHHHHhhCCCCCEEEEEecCCEEEeCCCCChhhhccc----CCeEEEecCCCc
Confidence 4445567899999999999999999999999877668899999999999999999999886532 899999999999
Q ss_pred ceeeCCCCeEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhcCCcceecCCCCcEEEecCCCC---CCeEeecce
Q psy2898 85 VTYHGPGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANGPFS---GAKIASIGL 161 (222)
Q Consensus 85 iTyHgPGQLv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~~~~---~~KIasiGv 161 (222)
+|||||||+|+|||+||++ +.++++|++.||+++|++|++|||+|++.++++|||| + ++||||+|+
T Consensus 82 ~tYHgPGQlv~Y~Il~l~~------~~~v~~~v~~le~~vI~~L~~~Gi~a~~~~g~~gV~v-----~~~~~rKIaaig~ 150 (232)
T 1w66_A 82 ITWHGPGQLVGYPIIGLAE------PLDVVNYVRRLEESLIQVCADLGLHAGRVDGRSGVWL-----PGRPARKVAAIGV 150 (232)
T ss_dssp EEEECTTEEEEEEECBBCS------SCCHHHHHHHHHHHHHHHHHHTTCCCEEETTEEEEEE-----CSSSCEEEEEEEE
T ss_pred eEEECCCCeEEEEEEECCC------CCCHHHHHHHHHHHHHHHHHHcCCCeEecCCCCeEEe-----cCCCCCEEEEeee
Confidence 9999999999999999975 5699999999999999999999999999899999999 6 899999999
Q ss_pred eEeeCcEEEeceeeeecCCCCcCCcccCCCCCCCceeeccc-CCCCCCHHHHHHHHhcccc
Q psy2898 162 KISAKGYVYHGVSINVSMDLEPFNNINPCGYPGLVIVDMKK-LGINTTISKVQHLFIKNFF 221 (222)
Q Consensus 162 ~i~~~~vt~HG~alNv~~dL~~f~~I~pCGl~~~~vTSL~~-lg~~~~~~~v~~~l~~~f~ 221 (222)
+++ +|+|+||+||||++||++|..|+|||+.+++||||++ ++.+++++++++.++++|+
T Consensus 151 r~~-~~vt~HG~aLNv~~dL~~f~~I~pcgi~~k~vtSl~~~lg~~~~~~ev~~~l~~~f~ 210 (232)
T 1w66_A 151 RVS-RATTLHGFALNCDCDLAAFTAIVPCGISDAAVTSLSAELGRTVTVDEVRATVAAAVC 210 (232)
T ss_dssp EEE-TTEEEEEEEEESSCCCGGGGGSCGGGCSSSEECCHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred eee-CCEEEcceEEecCcChHHhcCccccccCCCceeeeHHHhCCCCCHHHHHHHHHHHHH
Confidence 999 9999999999999999999999999999999999995 8999999999999998875
No 2
>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus} PDB: 2qht_A 2qhu_A 2qhv_A
Probab=100.00 E-value=4e-55 Score=378.93 Aligned_cols=198 Identities=27% Similarity=0.509 Sum_probs=182.4
Q ss_pred CceeEEEECCccchHHHHHHHHHHHHh-hcCCCCCeEEEEecCCeeeeccCCCccccc-ccc--cCCCcCEEEeCcCCCc
Q psy2898 10 YSNLQIIQRGLEPYIVSFNAMLLFNSN-RTNYTIDQLWFVEHFPVYTLGLKSNFSHIL-ISK--KLNNIPIIRTDRGGEV 85 (222)
Q Consensus 10 ~~~~~~~~lG~~~Y~~a~~~q~~~~~~-~~~~~~d~lll~EH~Pv~T~Gr~~~~~~ll-~~~--~~~gi~v~~~~RGG~i 85 (222)
...+.+.++|++||+++|++|+.+++. ..+..+++|||+||||+||+|++++.++++ +.+ +..||||++++|||++
T Consensus 20 ~~~~~~~~~g~~~y~~~~a~~e~l~~~~~~g~~~~~L~l~eh~p~~tlG~~q~~~~~~~~~~~l~~~gi~vvrr~rGGga 99 (237)
T 2qhs_A 20 HMEFLVEDLGLVPYGEAWAYQKRVHREVVAGNRPPTLLLLEHPRVITLGRKATGENLLFPESWYRENGFELYWVERGGDV 99 (237)
T ss_dssp -CEEEEEEEEECCHHHHHHHHHHHHHHHHTTCSCCEEEEEECSSEEEECTTCCGGGBSSCHHHHHHTTCEEEECCSSSSE
T ss_pred CCeEEEEeCCCcCHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCEEEeCCCCCchhcccCHHHHHhcCCeEEEEcCCCEE
Confidence 346889999999999999999999998 455678999999999999999999988863 332 2459999999999999
Q ss_pred eeeCCCCeEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhcCCcceecCCCCcEEEecCCCCCCeEeecceeEee
Q psy2898 86 TYHGPGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANGPFSGAKIASIGLKISA 165 (222)
Q Consensus 86 TyHgPGQLv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~~~~~~KIasiGv~i~~ 165 (222)
|||||||+|+|||++++ . ++++|++.||+++|++|++|||++++.++++|||+ +++|||++|++++
T Consensus 100 vyH~pGqlv~Y~i~~~~-------~-~~~~~~~~l~~~ii~~L~~lGi~a~~~~g~~dv~v-----~grKIag~g~~~~- 165 (237)
T 2qhs_A 100 TYHGPGQLVGYPIFPVG-------R-EVRRFLRQIEEAIVRVAAGYGISAYPTPGYAGVWV-----GEDKLCAIGVAVK- 165 (237)
T ss_dssp EEECTTEEEEEEECCCT-------T-CHHHHHHHHHHHHHHHHHHTTCCCBCCSSSSSEEE-----TTEEEEEEEEEEE-
T ss_pred EEECCCCEEEEEEEECC-------c-CHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCEEE-----CCcEEEEEeEEee-
Confidence 99999999999999875 3 79999999999999999999999998888999999 8999999999999
Q ss_pred CcEEEeceeeeecCCCCcCCcccCCCCCCCceeeccc-CCCCCCHHHHHHHHhcccc
Q psy2898 166 KGYVYHGVSINVSMDLEPFNNINPCGYPGLVIVDMKK-LGINTTISKVQHLFIKNFF 221 (222)
Q Consensus 166 ~~vt~HG~alNv~~dL~~f~~I~pCGl~~~~vTSL~~-lg~~~~~~~v~~~l~~~f~ 221 (222)
+|+++||++||+++|+++|..|+|||+.+++||||++ ++.+++++++++.+.++|+
T Consensus 166 ~~~~~hg~aLnv~~dl~~f~~i~p~g~~~~~vtSl~~~l~~~~~~~ev~~~l~~~f~ 222 (237)
T 2qhs_A 166 EGVSFHGFALNVNTDLNDFTVIVPCGLKGKGVTSLEKLLGRKVPMEEAKARVVAAFA 222 (237)
T ss_dssp TTEEEEEEEEESSCCGGGGGGBCCCSSCCSEECCHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred CCeEEEeEEEecccChHHhcCcCcCccCCCcEEeHHHhhCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998 8999999999999998875
No 3
>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125} SCOP: d.104.1.3
Probab=100.00 E-value=4.7e-39 Score=284.88 Aligned_cols=199 Identities=14% Similarity=0.049 Sum_probs=167.0
Q ss_pred ceeEEEECCc----cchHHHHHHHHHHHHhhc-CCCCCeEEEEecCCeeeeccC--CCcccccccc--cCCCcCEEEeCc
Q psy2898 11 SNLQIIQRGL----EPYIVSFNAMLLFNSNRT-NYTIDQLWFVEHFPVYTLGLK--SNFSHILISK--KLNNIPIIRTDR 81 (222)
Q Consensus 11 ~~~~~~~lG~----~~Y~~a~~~q~~~~~~~~-~~~~d~lll~EH~Pv~T~Gr~--~~~~~ll~~~--~~~gi~v~~~~R 81 (222)
+.+.+.+.+. .++...+++|+.+.+... +..+++|+|+||+|+||+|++ +++....+.+ +..||||++++|
T Consensus 13 ~~~~~i~~~~~~~~~d~~~nlA~de~Ll~~~~~g~~~~~l~l~~~~p~vtlG~~~~q~~~~e~~~~~~~~~gi~vvRR~s 92 (288)
T 2p5i_A 13 QPWRFLDHTSFGPTFQALQSFAYDDTLCTSIGKSQSPPTLRAWVHHNTVVLGIQDSRLPQIKAGIEALKGFQHDVIVRNS 92 (288)
T ss_dssp -CCEEEEESSCCTTSCHHHHHHHHHHHHHHHTTTSSCCEEEEECCSSEEEEEHHHHTSTTHHHHHHHHHHTTCEEEEESS
T ss_pred CcEEEEECCCcCCCCCHHHhHHHHHHHHHHhhcCCCCCEEEEecCCCEEEECCCcCCCccHhhhHHHHHHcCCeEEEEcC
Confidence 3678888887 589999999999998854 457899999999999999998 5443321111 134999999999
Q ss_pred CCCceeeCCCCeEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhcCCccee-------cCCCCcEEEecCCCCCC
Q psy2898 82 GGEVTYHGPGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKR-------KKNAPGVYIANGPFSGA 154 (222)
Q Consensus 82 GG~iTyHgPGQLv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi~a~~-------~~~~~GVwv~~~~~~~~ 154 (222)
||++|||||||+ .|+++..++. +.+++++++.+|++++++|++|||++++ .++++|||| +++
T Consensus 93 GGgaVyHdpG~l-~ysli~~~~~-----~~~v~~~y~~l~~~ii~~L~~lGi~a~~~~~~~~~c~g~~dl~v-----~gr 161 (288)
T 2p5i_A 93 GGLAVVLDSGIL-NLSLVLKEEK-----GFSIDDGYELMYELICSMFQDHREQIEAREIVGSYCPGSYDLSI-----DGK 161 (288)
T ss_dssp CCCCEEECTTEE-EEEEEEECCT-----TCCHHHHHHHHHHHHHHHTC---CCCEECCCTTSSSCCTTCEEE-----TTE
T ss_pred CCceEEECCCcE-EEEEEEcCCC-----CCCHHHHHHHHHHHHHHHHHHcCCcEEEeccccCCCCCCccEEE-----CCE
Confidence 999999999986 8888876654 6799999999999999999999999887 378999999 899
Q ss_pred eEeecceeEeeCcEEEeceeeeecCCCCc--------CCc--------ccCCCCCCCceeeccc-CCCCCCHHHHHHHHh
Q psy2898 155 KIASIGLKISAKGYVYHGVSINVSMDLEP--------FNN--------INPCGYPGLVIVDMKK-LGINTTISKVQHLFI 217 (222)
Q Consensus 155 KIasiGv~i~~~~vt~HG~alNv~~dL~~--------f~~--------I~pCGl~~~~vTSL~~-lg~~~~~~~v~~~l~ 217 (222)
|||++|++++ +++++||++||+++|++. |+. |.|||+.+.+||||++ ++.+++++++++.|.
T Consensus 162 KI~G~Aqr~~-~~~~lhh~~l~v~~dl~~~~~~l~~f~~~~l~~~~~ki~~~gi~~~~VtsL~~~l~~~~~~~~v~~~l~ 240 (288)
T 2p5i_A 162 KFAGISQRRI-RGGVAVQIYLCVSGSGAERAKMIRTFYDKAVAGQPTKFVYPRIKPETMASLSELLGQPHNVSDVLLKAL 240 (288)
T ss_dssp EEEEEEEEEE-TTEEEEEEEEECSSCHHHHHHHHHHHHHHHHTTSCCSSCCCCCCGGGBCCHHHHHTSCCCHHHHHHHHH
T ss_pred EEEEEEEEEe-CCEEEEEEEEEecCCHHHHHHHHHHHHHHhhcCccccccccccchhhceeHHHHcCCCCCHHHHHHHHH
Confidence 9999999999 999999999999999987 654 4455998899999999 688899999999999
Q ss_pred cccc
Q psy2898 218 KNFF 221 (222)
Q Consensus 218 ~~f~ 221 (222)
++|+
T Consensus 241 ~~f~ 244 (288)
T 2p5i_A 241 MTLQ 244 (288)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
No 4
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A* 3r07_A
Probab=100.00 E-value=1.2e-38 Score=278.27 Aligned_cols=195 Identities=15% Similarity=0.185 Sum_probs=157.2
Q ss_pred eeEEEECCccchHHHHHHHHHHHHhhcCCCCCeEEEEecCCeeeeccCCCcccccccc--cCCCcCEEEeCcCCCceeeC
Q psy2898 12 NLQIIQRGLEPYIVSFNAMLLFNSNRTNYTIDQLWFVEHFPVYTLGLKSNFSHILISK--KLNNIPIIRTDRGGEVTYHG 89 (222)
Q Consensus 12 ~~~~~~lG~~~Y~~a~~~q~~~~~~~~~~~~d~lll~EH~Pv~T~Gr~~~~~~ll~~~--~~~gi~v~~~~RGG~iTyHg 89 (222)
...+.+.+..+....+++++.+.+......+++|+|+||+|+||+|+++++.+.++.+ +..||||++++|||++||||
T Consensus 3 ~~~~i~~~~~~~~~nlA~ee~Ll~~~~~~~~~~l~l~~~~p~v~lG~~q~~~~e~~~~~~~~~gi~vvrR~sGGgavyhd 82 (262)
T 2c8m_A 3 GRLLLLETPGNTRMSLAYDEAIYRSFQYGDKPILRFYRHDRSVIIGYFQVAEEEVDLDYMKKNGIMLARRYTGGGAVYHD 82 (262)
T ss_dssp EEEECCCCTTCHHHHHHHHHHHHHHCCTTSCCEEEEECCSSEEEECTTCCHHHHSCHHHHHHTTCEEEECSSCSCCEEEC
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHcccCCCCcEEEEEcCCCEEEECCCCChhHHhHHHHHHhcCCcEEEECCCCceEEeC
Confidence 3556677889999999999999987554447999999999999999999987665433 23599999999999999999
Q ss_pred CCCeEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhcCC----------cceecCCCCcEEEecCCCCCCeEeec
Q psy2898 90 PGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNI----------NCKRKKNAPGVYIANGPFSGAKIASI 159 (222)
Q Consensus 90 PGQLv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi----------~a~~~~~~~GVwv~~~~~~~~KIasi 159 (222)
|||| .|+++... . ..++++..+.++++++++|++||| .+++. +++|||+ +++|||++
T Consensus 83 ~G~l-~ys~i~~~-~-----~~~~~~~y~~l~~~ii~~l~~lGi~~~~~~~~~~~a~~~-g~~dv~v-----~g~Ki~G~ 149 (262)
T 2c8m_A 83 LGDL-NFSVVRSS-D-----DMDITSMFRTMNEAVVNSLRILGLDARPGELNDVSIPVN-KKTDIMA-----GEKKIMGA 149 (262)
T ss_dssp TTEE-EEEEEEEC-S-----SCCHHHHHHHHHHHHHHHHHHTTCCCEECCBCCTTSSSS-BTTSEEE-----TTEEEEEE
T ss_pred CCcE-EEEEEEcC-C-----CCCHHHHHHHHHHHHHHHHHHcCCCcccccccCCcceEC-CcCcEEE-----CCeEEEEe
Confidence 9998 66665322 2 348886668899999999999999 67654 7899999 89999999
Q ss_pred ceeEeeCcEEEeceeeeecCCCCcCC---cccCCCCCCCc-------eeecccCCCCCCHHHHHHHHhcccc
Q psy2898 160 GLKISAKGYVYHGVSINVSMDLEPFN---NINPCGYPGLV-------IVDMKKLGINTTISKVQHLFIKNFF 221 (222)
Q Consensus 160 Gv~i~~~~vt~HG~alNv~~dL~~f~---~I~pCGl~~~~-------vTSL~~lg~~~~~~~v~~~l~~~f~ 221 (222)
|++++ +++++||.+||+++|++.|. .+.|||+.++. ||||+++. +++++++++.|.++|+
T Consensus 150 aqr~~-~~~~lhhgtllv~~d~~~~~~~l~~~~~~~~~~g~~s~~~~vtsL~~~~-~~~~~~v~~~l~~~~~ 219 (262)
T 2c8m_A 150 AGAMR-KGAKLWHAAMLVHTDLDMLSAVLKVPDEKFRDKIAKSTRERVANVTDFV-DVSIDEVRNALIRGFS 219 (262)
T ss_dssp EEEEE-TTEEEEEEEEESSCCHHHHHHHTC---------------CCBCCGGGTS-CCCHHHHHHHHHHHHH
T ss_pred eeEEe-CCEEEEEEEEEecCCHHHHHHHhCCChhhhhhhccccHHhhhccHHHhc-CCCHHHHHHHHHHHHH
Confidence 99999 99999999999999998764 55689998877 99999966 8999999999988874
No 5
>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, 10425H, structural genomics, structure initiative, PSI-2; 2.04A {Streptococcus agalactiae} SCOP: d.104.1.3
Probab=100.00 E-value=2.7e-38 Score=280.08 Aligned_cols=200 Identities=13% Similarity=0.057 Sum_probs=168.5
Q ss_pred CceeEEEEC---CccchHHHHHHHHHHHHhhc-CCCCCeEEEEecCCeeeeccC--CCcccccccc--cCCCcCEEEeCc
Q psy2898 10 YSNLQIIQR---GLEPYIVSFNAMLLFNSNRT-NYTIDQLWFVEHFPVYTLGLK--SNFSHILISK--KLNNIPIIRTDR 81 (222)
Q Consensus 10 ~~~~~~~~l---G~~~Y~~a~~~q~~~~~~~~-~~~~d~lll~EH~Pv~T~Gr~--~~~~~ll~~~--~~~gi~v~~~~R 81 (222)
...+.+.+. |..++..++++|+.+.+... +..+++|+|+||+|+||+|++ +++....+.. +..||||++++|
T Consensus 10 ~~~~r~i~~~~~~~~d~~~nlAlde~Ll~~~~~g~~~~~L~l~~~~p~vtlG~~~~q~~~~e~~~~~~~~~gi~vvRR~s 89 (288)
T 2p0l_A 10 QLPVSIFKDYVTDAQDAEKPFIWTEVFLREINRSNQEIILHIWPMTKTVILGMLDRELPHLELAKKEIISRGYEPVVRNF 89 (288)
T ss_dssp TSCEEEEECCBCSGGGTTHHHHHHHHHHHHHHHSCSCEEEEECCBSSEEEECTTGGGCTTHHHHHHHHHTTTCEEEECTT
T ss_pred CCcEEEEECCCCCCCCHHHHHHHHHHHHHhhhcCCCCCEEEEecCCCEEEECCCCCCCcchhhhHHHHHHCCCEEEEEcC
Confidence 345777776 78899999999999998743 467899999999999999999 5543322221 235999999999
Q ss_pred CCCceeeCCCCeEEEEee-ecC-cccccccCCcHHHHHHHHHHHHHHHHhhcCCcceec-------CCCCcEEEecCCCC
Q psy2898 82 GGEVTYHGPGQAIIYLLI-DLR-RRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRK-------KNAPGVYIANGPFS 152 (222)
Q Consensus 82 GG~iTyHgPGQLv~YpIl-~L~-~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi~a~~~-------~~~~GVwv~~~~~~ 152 (222)
||++||||||| +.|+++ +.+ .. +.+++++++.++++++++|++|||++++. ++++|||| +
T Consensus 90 GGgaVyHdpG~-l~ysli~~~~~~~-----~~~i~~~y~~l~~~ii~aL~~lGi~a~~~~~~~~~c~g~~Dl~v-----~ 158 (288)
T 2p0l_A 90 GGLAVVADEGI-LNFSLVIPDVFER-----KLSISDGYLIMVDFIRSIFSDFYQPIEHFEVETSYCPGKFDLSI-----N 158 (288)
T ss_dssp CCSCEEESTTE-EEEEEEEESCC--------CCHHHHHHHHHHHHHHHTTTSCSCCEECCCTTSSSCCTTCEEE-----T
T ss_pred CCCeEEECCCc-EEEEEEEcCcccc-----CCCHHHHHHHHHHHHHHHHHHcCCcEEEccccCCCCCCCccEEE-----C
Confidence 99999999998 567766 665 34 57999999999999999999999998873 78999999 8
Q ss_pred CCeEeecceeEeeCcEEEeceeeeecCCCCc--------CCcc--------cCCCCCCCceeeccc-CCCCCCHHHHHHH
Q psy2898 153 GAKIASIGLKISAKGYVYHGVSINVSMDLEP--------FNNI--------NPCGYPGLVIVDMKK-LGINTTISKVQHL 215 (222)
Q Consensus 153 ~~KIasiGv~i~~~~vt~HG~alNv~~dL~~--------f~~I--------~pCGl~~~~vTSL~~-lg~~~~~~~v~~~ 215 (222)
++|||++|++++ +++++||++||+++|++. |..+ .+||+...+||||++ ++.+++++++++.
T Consensus 159 grKI~G~Aqr~~-~~~~lhh~sl~v~~dl~~~~~~l~~~~~~~l~~~~~k~~~~gi~~~~VtsL~~~l~~~~~~~~v~~~ 237 (288)
T 2p0l_A 159 GKKFAGLAQRRI-KNGIAVSIYLSVCGDQKGRSQMISDFYKIGLGDTGSPIAYPNVDPEIMANLSDLLDCPMTVEDVIDR 237 (288)
T ss_dssp TEEEEEEEEEEE-TTEEEEEEEEECSSCHHHHHHHHHHHHHHHHTTTCCSSCCCCCCTTSBCCHHHHTTCCCCHHHHHHH
T ss_pred CEEEEEEeEEEe-CCEEEEEEEEEecCCHHHHHHHHHHHHHHhcCCccccccccccchhheeeHHHHcCCCCCHHHHHHH
Confidence 999999999999 999999999999999976 6543 568999999999999 6778999999999
Q ss_pred Hhcccc
Q psy2898 216 FIKNFF 221 (222)
Q Consensus 216 l~~~f~ 221 (222)
|.++|+
T Consensus 238 l~~~f~ 243 (288)
T 2p0l_A 238 MLISLK 243 (288)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998875
No 6
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3
Probab=100.00 E-value=5.9e-37 Score=277.60 Aligned_cols=194 Identities=14% Similarity=0.186 Sum_probs=164.2
Q ss_pred eeEEEECCccchHHHHHHHHHHHHhhcCCCCCeEEEEecCCeeeeccCCCcccccccc--cCCCcCEEEeCcCCCceeeC
Q psy2898 12 NLQIIQRGLEPYIVSFNAMLLFNSNRTNYTIDQLWFVEHFPVYTLGLKSNFSHILISK--KLNNIPIIRTDRGGEVTYHG 89 (222)
Q Consensus 12 ~~~~~~lG~~~Y~~a~~~q~~~~~~~~~~~~d~lll~EH~Pv~T~Gr~~~~~~ll~~~--~~~gi~v~~~~RGG~iTyHg 89 (222)
.|...-.+..+=...+++++.+.+... ..+++|+|+||+|+||+|+++++.+.++.+ +..||||+|++|||++||||
T Consensus 12 ~~~~~~~~~~d~~~nlAlee~Ll~~~~-~~~~~L~l~~~~p~v~iG~~q~~~~ev~~~~~~~~gi~vvRR~sGGgaVyHd 90 (341)
T 1vqz_A 12 HMKYIINHSNDTAFNIALEEYAFKHLL-DEDQIFLLWINKPSIIVGRHQNTIEEINRDYVRENGIEVVRRISGGGAVYHD 90 (341)
T ss_dssp CEEEEECCCCCHHHHHHHHHHHHHHCT-TCSEEEEEECCSSEEEECTTCCGGGTBCHHHHHHHTCEEEECSSCSCCEEEC
T ss_pred ceeEEeCCCCCHHHHHHHHHHHHHhcC-CCCCEEEEEcCCCEEEECCCCChhhhhCHHHHHHcCCcEEEECCCCCeEEEC
Confidence 455555666676777888888877644 367899999999999999999987765433 13499999999999999999
Q ss_pred CCCeEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhcCCcceecCCCCcEEEecCCCCCCeEeecceeEeeCcEE
Q psy2898 90 PGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANGPFSGAKIASIGLKISAKGYV 169 (222)
Q Consensus 90 PGQLv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~~~~~~KIasiGv~i~~~~vt 169 (222)
|||+ .|++++.+.. ..++ +| +.++++++++|+++||+++. ++++|||| +++|||++|++++ ++++
T Consensus 91 ~G~l-~ys~i~~~~~-----~~~~-~y-~~l~~~ii~aL~~lGi~a~~-~gr~Di~v-----~grKIsG~Aqr~~-~~~~ 155 (341)
T 1vqz_A 91 LNNL-NYTIISKEDE-----NKAF-DF-KSFSTPVINTLAQLGVKAEF-TGRNDLEI-----DGKKFCGNAQAYI-NGRI 155 (341)
T ss_dssp TTEE-EEEEEEECCT-----TCCC-SH-HHHHHHHHHHHHHTTCCEEE-ETTTEEEE-----TTEEEEEEEEEEE-TTEE
T ss_pred CCce-EEEEEEcCcc-----cCCc-cH-HHHHHHHHHHHHHcCCeEEE-CCCCCEEE-----eCEEEEEEEEEEE-CCEE
Confidence 9995 9999987754 3356 44 78999999999999999986 46899999 8999999999999 9999
Q ss_pred EeceeeeecCCCCcCC---cccCCCCCCCc-------eeeccc-CCCCCCHHHHHHHHhcccc
Q psy2898 170 YHGVSINVSMDLEPFN---NINPCGYPGLV-------IVDMKK-LGINTTISKVQHLFIKNFF 221 (222)
Q Consensus 170 ~HG~alNv~~dL~~f~---~I~pCGl~~~~-------vTSL~~-lg~~~~~~~v~~~l~~~f~ 221 (222)
+||.+||+++|++.|. .+.|||+.+++ ||||++ ++.++++++++++|.++|+
T Consensus 156 lhhgtllvd~Dl~~~~~~L~~~~~k~~~kgv~s~~~~VtsL~~~l~~~~~~~~v~~~l~~~f~ 218 (341)
T 1vqz_A 156 MHHGCLLFDVDLSVLANALKVSKDKFESKGVKSVRARVTNIINELPKKITVEKFRDLLLEYMK 218 (341)
T ss_dssp EEEEEEESSCCTTHHHHHBCCCSSCCEECSCCCCCCCBCCGGGTCSSCCCHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCHHHHHHHhCCCccchhhcccccchhhheeHHHhcCCCCCHHHHHHHHHHHHH
Confidence 9999999999999876 66799998765 999998 5778999999999998874
No 7
>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A*
Probab=100.00 E-value=6.1e-35 Score=263.79 Aligned_cols=194 Identities=12% Similarity=0.173 Sum_probs=158.8
Q ss_pred eeEEEECCccchHHHHHHHHHHHHhhcCCCCCeEEEEecCCeeeeccCCCcccccccc--cCCCcCEEEeCcCCCceeeC
Q psy2898 12 NLQIIQRGLEPYIVSFNAMLLFNSNRTNYTIDQLWFVEHFPVYTLGLKSNFSHILISK--KLNNIPIIRTDRGGEVTYHG 89 (222)
Q Consensus 12 ~~~~~~lG~~~Y~~a~~~q~~~~~~~~~~~~d~lll~EH~Pv~T~Gr~~~~~~ll~~~--~~~gi~v~~~~RGG~iTyHg 89 (222)
.+.+.+.+..+=...+++++.+.+.... .+++|+|+||+|+||+|+++++.+.++.+ +..||||+|++|||++||||
T Consensus 2 ~~r~i~~~~~d~~~nlA~ee~Ll~~~~~-~~~~l~l~~~~p~v~iG~~q~~~~e~~~~~~~~~gi~vvRR~sGGgaVyHd 80 (337)
T 3a7r_A 2 TLRLLISDSYDPWFNLAVEECIFRQMPA-TQRVLFLWRNADTVVIGRAQNPWKECNTRRMEEDNVRLARRSSGGGAVFHD 80 (337)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHCCT-TCEEEEEECCSSEEEECTTCCHHHHSCHHHHHHTTCEEEECSSCSCCEEEC
T ss_pred cEEEEECCCCCHHHHHHHHHHHHHhcCC-CCcEEEEEeCCCEEEECCCCChhHhhCHHHHHHcCCeEEEEcCCCccEEEC
Confidence 3555565556666778888888876443 46899999999999999999987655432 23599999999999999999
Q ss_pred CCCeEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhcCCcceecCCCCcEEEecCCCCC-CeEeecceeEeeCcE
Q psy2898 90 PGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANGPFSG-AKIASIGLKISAKGY 168 (222)
Q Consensus 90 PGQLv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~~~~~-~KIasiGv~i~~~~v 168 (222)
|||| .|++++.+.. .+ | +.++++++++|++|||+|++. +++||||.. .++ +|||++|++++ +++
T Consensus 81 ~G~l-~ys~i~~~~~------~~---y-~~l~~~ii~~L~~lGi~a~~~-g~~di~v~~--~~g~rKIsG~Aqr~~-~~~ 145 (337)
T 3a7r_A 81 LGNT-CFTFMAGKPE------YD---K-TISTSIVLNALNALGVSAEAS-GRNDLVVKT--VEGDRKVSGSAYRET-KDR 145 (337)
T ss_dssp TTEE-EEEEEEETTT------CC---H-HHHHHHHHHHHHHTTCCEEEE-TTTEEEECC--TTSCEEEEEEEEEEC-SSE
T ss_pred CCcE-EEEEEECCcc------cC---H-HHHHHHHHHHHHHcCCeEEEC-CCCcEEEEe--CCCceEEEEEEEEEE-CCE
Confidence 9999 9999987653 23 5 679999999999999999865 689999922 136 99999999999 999
Q ss_pred EEeceeeeecCCCCc---CCcccCCCCCCCc-------eeecccCCCCCCHHHHHHHHhcccc
Q psy2898 169 VYHGVSINVSMDLEP---FNNINPCGYPGLV-------IVDMKKLGINTTISKVQHLFIKNFF 221 (222)
Q Consensus 169 t~HG~alNv~~dL~~---f~~I~pCGl~~~~-------vTSL~~lg~~~~~~~v~~~l~~~f~ 221 (222)
++||.+||+++|++. |..+.|||+.+++ ||||+++...++++++++++.++|+
T Consensus 146 ~lhhgtll~~~dl~~l~~~l~~~~~~~~~kgv~sv~~~vt~L~~~~~~~~~~~v~~~l~~~f~ 208 (337)
T 3a7r_A 146 GFHHGTLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITEAFF 208 (337)
T ss_dssp EEEEEEEESSCCHHHHHHHTSCCCCEEEECSCCCCCCCBCCGGGTCTTCCHHHHHHHHHHHHH
T ss_pred EEEEEEEEecCCHHHHHHHhcCChhhhhhcCCCchhhheeEHHHhCCCCCHHHHHHHHHHHHH
Confidence 999999999999875 5578899987654 5788786556999999999998874
No 8
>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A
Probab=100.00 E-value=1.3e-33 Score=256.00 Aligned_cols=185 Identities=12% Similarity=0.124 Sum_probs=153.7
Q ss_pred CccchHHHHHHHHHHHHhhcCCCCCeEEEEecCCeeeeccCCCcccccccc--cCCCcCEEEeCcCCCceeeCCCCeEEE
Q psy2898 19 GLEPYIVSFNAMLLFNSNRTNYTIDQLWFVEHFPVYTLGLKSNFSHILISK--KLNNIPIIRTDRGGEVTYHGPGQAIIY 96 (222)
Q Consensus 19 G~~~Y~~a~~~q~~~~~~~~~~~~d~lll~EH~Pv~T~Gr~~~~~~ll~~~--~~~gi~v~~~~RGG~iTyHgPGQLv~Y 96 (222)
+..+-...+++++.+.+......+++|+|+||+|+||+|+++++...++.+ +..||||+|++|||++||||||| +.|
T Consensus 11 ~~~d~~~nlAlee~Ll~~~~~~~~~~l~l~~~~p~v~iG~~q~~~~e~~~~~~~~~gi~vvRR~sGGgaVyHd~G~-l~y 89 (347)
T 2e5a_A 11 ISNDVYHNLAVEDWIHDHMNLEGKPVLFLWRNSPTVVIGRHQNPWQECNLNLMREEGVKLARRRSGGGTVYHDMGN-INL 89 (347)
T ss_dssp SCCCHHHHHHHHHHHHHHCCCTTCCEEEEECCSSEEEECTTCCHHHHSCHHHHHTTTCEEEECSSCSCCEEECTTE-EEE
T ss_pred CCCCHHHHHHHHHHHHHhcccCCCCEEEEEcCCCEEEECCCCCchhhhCHHHHHHCCCeEEEECCCCCcEEECCCc-EEE
Confidence 445666678888888877555568999999999999999999977655443 24699999999999999999999 899
Q ss_pred EeeecCcccccccCCcHHHHHHHHHHHHHHHHhhcC--CcceecCCCCcEEEecCCCCC-CeEeecceeEeeCcEEEece
Q psy2898 97 LLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYN--INCKRKKNAPGVYIANGPFSG-AKIASIGLKISAKGYVYHGV 173 (222)
Q Consensus 97 pIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~g--i~a~~~~~~~GVwv~~~~~~~-~KIasiGv~i~~~~vt~HG~ 173 (222)
++++.+.. .+ | ..++++++++|+++| |+|+.. +++|||| ++ +|||++|++++ +++++|+.
T Consensus 90 s~i~~~~~------~~---~-~~~~~~ii~~L~~lG~~i~a~~~-g~~di~v-----~g~~KIsG~Aq~~~-~~~~lhhg 152 (347)
T 2e5a_A 90 TFFTTKKK------YD---R-MENLKLVVRALKAVHPHLDVQAT-KRFDLLL-----DGQFKISGTASKIG-RNAAYHHC 152 (347)
T ss_dssp EEEECGGG------CC---H-HHHHHHHHHHHHHHSTTCCEEEC-TTSCEEE-----TTTEEEECEEEEEC-SSCEEEEE
T ss_pred EEEecccc------CC---H-HHHHHHHHHHHHHhCCceEEEEC-CCCcEEE-----CCCcEEEEEeEEee-CCeEEEEE
Confidence 99986542 34 2 257999999999999 999865 6899999 77 99999999999 99999999
Q ss_pred eeeecCCCC---cCCcccCCCCCCCceeecc-------cCCCCCCHHHHHHHHhcccc
Q psy2898 174 SINVSMDLE---PFNNINPCGYPGLVIVDMK-------KLGINTTISKVQHLFIKNFF 221 (222)
Q Consensus 174 alNv~~dL~---~f~~I~pCGl~~~~vTSL~-------~lg~~~~~~~v~~~l~~~f~ 221 (222)
+||+++|++ .+..+.|||+.++.++|+. +++.+++++++++++.++|+
T Consensus 153 tll~~~d~~~l~~~l~~~~~~~~~kgv~Sv~~~v~~L~~~~~~~~~~~v~~~l~~~f~ 210 (347)
T 2e5a_A 153 TLLCGTDGTFLSSLLKSPYQGIRSNATASTPALVKNLMEKDPTLTCEVVINAVATEYA 210 (347)
T ss_dssp EEESSCCHHHHHHHTSCCCCSEEECSCCCCCCCBCCHHHHCTTCCHHHHHHHHHHHHH
T ss_pred EEEEecCHHHHHHHHccCchhhhhhcccchHHhhccHHHhCCCCCHHHHHHHHHHHHH
Confidence 999999975 4567789999887766665 44567999999999988774
No 9
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=98.39 E-value=1.4e-06 Score=74.61 Aligned_cols=117 Identities=18% Similarity=0.231 Sum_probs=88.3
Q ss_pred CcCCCceeeCCCCeEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhcCCcceecCCCCcEEEecCCCCCCeEeec
Q psy2898 80 DRGGEVTYHGPGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANGPFSGAKIASI 159 (222)
Q Consensus 80 ~RGG~iTyHgPGQLv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~~~~~~KIasi 159 (222)
-|.|..++--||.|.+..++..+.. ......-.++..+ ++.++|+++|++...+- +|+||+ +++|||.|
T Consensus 47 GR~Gr~W~Sp~G~l~~S~~l~p~~~---~~~~~~l~l~~al--Av~~al~~~~~~~~iKW-PNDi~~-----~gkKl~GI 115 (235)
T 2dxu_A 47 GALNRKWESPEGGLWLSIVLSPKVP---QKDLPKIVFLGAV--GVVETLKEFSIDGRIKW-PNDVLV-----NYKKIAGV 115 (235)
T ss_dssp CGGGCBCCCCTTSEEEEEEECCCSC---GGGGGGHHHHHHH--HHHHHHHHTTCCCEEET-TTEEEE-----TTEEEEEE
T ss_pred CCCcCcccCCCCCeEEEEEeecCCC---HHHHHHHHHHHHH--HHHHHHHHhCCCeeeeC-CCEEEE-----CCEEEEEE
Confidence 4777887778898888887653321 1112233455555 88999999999888887 899999 89999999
Q ss_pred ceeEeeCcEEEeceeeeecCCCCcCCcccCCCCCCCceeeccc-CCCCCCHHHHHHHHhccc
Q psy2898 160 GLKISAKGYVYHGVSINVSMDLEPFNNINPCGYPGLVIVDMKK-LGINTTISKVQHLFIKNF 220 (222)
Q Consensus 160 Gv~i~~~~vt~HG~alNv~~dL~~f~~I~pCGl~~~~vTSL~~-lg~~~~~~~v~~~l~~~f 220 (222)
=+... .....=|+.||++++ | |-. .|||.. .+.+++.+++...+.++|
T Consensus 116 L~E~~-~~~vViGiGiNv~~~---~----p~~-----atsL~~~~~~~~~r~~ll~~ll~~l 164 (235)
T 2dxu_A 116 LVEGK-GDKIVLGIGLNVNNK---V----PNG-----ATSMKLELGSEVPLLSVFRSLITNL 164 (235)
T ss_dssp EEEEC-SSCEEEEEEECSSSC---C----CTT-----BCCHHHHHTSCCCHHHHHHHHHHHH
T ss_pred EEeec-CCEEEEEEEEEeCCC---C----CCc-----hhhHHHhhCCCCCHHHHHHHHHHHH
Confidence 88876 566788999999987 2 221 899986 688899999988887766
No 10
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=98.33 E-value=3.7e-06 Score=71.73 Aligned_cols=122 Identities=18% Similarity=0.189 Sum_probs=81.5
Q ss_pred eCcCCCceeeCCCCeEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhc-CCcceecCCCCcEEEecCCCCCCeEe
Q psy2898 79 TDRGGEVTYHGPGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQY-NINCKRKKNAPGVYIANGPFSGAKIA 157 (222)
Q Consensus 79 ~~RGG~iTyHgPGQLv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~-gi~a~~~~~~~GVwv~~~~~~~~KIa 157 (222)
+-|.|..++--||.|.+..++... . ......-.++..+ ++.++|+++ |++...+. +|+||+ +++|||
T Consensus 38 RGR~Gr~W~Sp~G~l~~S~~l~p~-~---~~~~~~lsl~~~l--Av~~al~~~~~~~~~iKW-PNDI~~-----~gkKl~ 105 (233)
T 2eay_A 38 RGRLGRKWLSQEGGLYFSFLLNPK-E---FENLLQLPLVLGL--SVSEALEEITEIPFSLKW-PNDVYF-----QEKKVS 105 (233)
T ss_dssp -----------CCEEEEEEEECTT-T---CCCTTHHHHHHHH--HHHHHHHHHHCCCCEEET-TTEEEE-----TTEEEE
T ss_pred CCCCCCeeeCCCCCcEEEEEEcCC-C---HHHHHHHHHHHHH--HHHHHHHHhcCCCccEeC-cceEEE-----CCeEEE
Confidence 347788888888977777776433 2 1122344455555 889999996 99888887 899999 899999
Q ss_pred ecceeEeeCcEEEeceeeeecCCCCcCCcccCCCCCCCceeeccc-CCCCCCHHHHHHHHhccc
Q psy2898 158 SIGLKISAKGYVYHGVSINVSMDLEPFNNINPCGYPGLVIVDMKK-LGINTTISKVQHLFIKNF 220 (222)
Q Consensus 158 siGv~i~~~~vt~HG~alNv~~dL~~f~~I~pCGl~~~~vTSL~~-lg~~~~~~~v~~~l~~~f 220 (222)
.|=+... .....=|+.||++++ .| |-.++ ...|||.+ .+.+++.+++...+.++|
T Consensus 106 GIL~E~~-~~~~ViGIGiNv~~~--~~----p~~~~-~~atsL~~~~~~~~~r~~ll~~ll~~l 161 (233)
T 2eay_A 106 GVLCELS-KDKLIVGIGINVNQR--EI----PEEIK-DRATTLYEITGKDWDRKEVLLKVLKRI 161 (233)
T ss_dssp EEEEEEE-TTEEEEEEEEECSCC--CC----CTTTT-TTBCCHHHHHSSCCCHHHHHHHHHHHH
T ss_pred EEEEEee-cCCCEEEEEEEcccc--cC----cchhh-hhhhhhHHhHCCCCCHHHHHHHHHHHH
Confidence 9988877 444488999999972 22 33442 36899986 688899999988887766
No 11
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=98.22 E-value=8.3e-06 Score=72.83 Aligned_cols=125 Identities=14% Similarity=0.132 Sum_probs=82.7
Q ss_pred CcCCCceeeCCC-CeEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhc-CCcceecCCCCcEEEecCCCCCCeEe
Q psy2898 80 DRGGEVTYHGPG-QAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQY-NINCKRKKNAPGVYIANGPFSGAKIA 157 (222)
Q Consensus 80 ~RGG~iTyHgPG-QLv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~-gi~a~~~~~~~GVwv~~~~~~~~KIa 157 (222)
-|.|..++--|| .|.+..++..... ......-.++..+ ++.++|+++ |++...+. +|+||+ +++|||
T Consensus 121 GR~GR~W~Sp~G~~L~~S~~l~p~~~---~~~~~~lsl~~av--Av~~al~~~~~~~~~iKW-PNDI~~-----~gkKl~ 189 (323)
T 3rkx_A 121 GRFNRHWSSSKGQGLWMSVVLRPNVA---FSMISKFNLFIAL--GIRDAIQHFSQDEVKVKW-PNDIYI-----DNGKVC 189 (323)
T ss_dssp ---------CTTCEEEEEEEECCCCC---TTSGGGHHHHHHH--HHHHHHHTTCSSCEEEET-TTEEEE-----TTEEEE
T ss_pred CCCCCeeeCCCCCCEEEEEEecCCCC---HHHHHHHHHHHHH--HHHHHHHHhcCCceEEeC-CCeEEE-----CCEEEE
Confidence 688888888889 7777777643321 1122333445555 889999987 88888777 899999 899999
Q ss_pred ecceeEeeC--c--EEEeceeeeecCCCCcCCcccCCCCCCCceeeccc-CCCCCCHHHHHHHHhccc
Q psy2898 158 SIGLKISAK--G--YVYHGVSINVSMDLEPFNNINPCGYPGLVIVDMKK-LGINTTISKVQHLFIKNF 220 (222)
Q Consensus 158 siGv~i~~~--~--vt~HG~alNv~~dL~~f~~I~pCGl~~~~vTSL~~-lg~~~~~~~v~~~l~~~f 220 (222)
.|=+..... . ...=|+.|||+++...| |..++ ...|||.+ .+.+++.+++...+.++|
T Consensus 190 GIL~E~~~~~~~~~~vViGIGiNv~~~~~~~----p~~l~-~~atsL~~~~g~~~~r~~ll~~ll~~l 252 (323)
T 3rkx_A 190 GFLTEMVANNDGIEAIICGIGINLTQQLENF----DESIR-HRATSIQLHDKNKLDRYQFLERLLQEI 252 (323)
T ss_dssp EEEEEEEECSSSEEEEEEEEEEECSCCGGGS----CTTTG-GGBCCSGGGCSSCCCHHHHHHHHHHHH
T ss_pred EEEeEeeeCCCCCCEEEEEEEEEecCCcccC----CcccC-cceeeHhhhhCCCCCHHHHHHHHHHHH
Confidence 997776521 2 34569999999864333 44543 36899987 688999999988888766
No 12
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=98.22 E-value=5.6e-06 Score=72.23 Aligned_cols=122 Identities=16% Similarity=0.114 Sum_probs=88.2
Q ss_pred CcCCCceeeCCC-CeEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHh---hc-CCcceecCCCCcEEEecCCCCCC
Q psy2898 80 DRGGEVTYHGPG-QAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMS---QY-NINCKRKKNAPGVYIANGPFSGA 154 (222)
Q Consensus 80 ~RGG~iTyHgPG-QLv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~---~~-gi~a~~~~~~~GVwv~~~~~~~~ 154 (222)
-|.|..++--|| .|.+..++..+.. + ......-.++..+ ++.++|+ ++ |++...+- +|+||+ +++
T Consensus 72 GR~GR~W~Sp~G~~L~~S~~l~~~~~-~-~~~~~~lsl~~~l--Av~~aL~~~~~~~~~~~~iKW-PNDI~~-----~gk 141 (270)
T 3rux_A 72 GRHGRGWAATARAQIILSVGVRVVDV-P-VQAWGWLSLAAGL--AVLDSVAPLIAVPPAETGLKW-PNDVLA-----RGG 141 (270)
T ss_dssp CGGGCEECCCTTSEEEEEEEEECTTS-C-GGGTHHHHHHHHH--HHHHHHGGGSSSCCSSCEEET-TTEEEE-----TTE
T ss_pred CCCCCeeeCCCCCCeEEEEEEccCCC-C-hHHHHHHHHHHHH--HHHHHHHHhcccCCCceEEEC-CCeEEE-----CCE
Confidence 677888888889 7888888765421 0 0012233444445 8899998 65 88888777 899999 899
Q ss_pred eEeecceeEeeCcEEEeceeeeecCCCCcCCcccCCCCCCCceeecccCCCCCCHHHHHHHHhccc
Q psy2898 155 KIASIGLKISAKGYVYHGVSINVSMDLEPFNNINPCGYPGLVIVDMKKLGINTTISKVQHLFIKNF 220 (222)
Q Consensus 155 KIasiGv~i~~~~vt~HG~alNv~~dL~~f~~I~pCGl~~~~vTSL~~lg~~~~~~~v~~~l~~~f 220 (222)
|||.|=+... .....=|+.|||+++-..| +....|||.+.+...+.+++...+.++|
T Consensus 142 Kl~GIL~E~~-~~~vViGIGiNv~~~~~~~--------~~~~atSL~~~~~~~~r~~ll~~ll~~l 198 (270)
T 3rux_A 142 KLAGILAEVA-QPFVVLGVGLNVTQAPEEV--------DPDATSLLDLGVAAPDRNRIASRLLREL 198 (270)
T ss_dssp EEEEEEEEEE-TTEEEEEEEEESSCCHHHH--------CTTBCCTGGGTCSSCCHHHHHHHHHHHH
T ss_pred EEEEEEEEee-CCeEEEEEEEeccCCcccc--------CchhhccHHHhcCCCCHHHHHHHHHHHH
Confidence 9999988877 5667789999999863222 1247899988655559898888887766
No 13
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=98.20 E-value=3.8e-06 Score=71.83 Aligned_cols=119 Identities=19% Similarity=0.310 Sum_probs=89.0
Q ss_pred CcCCCceeeCCCCeEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhc-CCcceecCCCCcEEEecCCCCC----C
Q psy2898 80 DRGGEVTYHGPGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQY-NINCKRKKNAPGVYIANGPFSG----A 154 (222)
Q Consensus 80 ~RGG~iTyHgPGQLv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~-gi~a~~~~~~~GVwv~~~~~~~----~ 154 (222)
-|.|..++--||.|.+..++..... ....-.++..+ ++.++|+++ |++...+- +|+||+ ++ +
T Consensus 39 GR~Gr~W~Sp~G~l~~S~~l~p~~~-----~~~~l~l~~~l--Av~~al~~~~~~~~~iKW-PNDi~~-----~g~~~~k 105 (237)
T 2ej9_A 39 GRWGRVWYSDEGGLYFSMVLDSKLY-----NPKVINLLVPI--CIIEVLKNYVDKELGLKF-PNDIMV-----KVNDNYK 105 (237)
T ss_dssp CGGGCBCCCCTTSEEEEEEEETTSS-----CHHHHHHHHHH--HHHHHHTTTCCSCEEEET-TTEEEE-----EETTEEE
T ss_pred CCCCCeeeCCCCCeEEEeEEccccC-----CHHHHHHHHHH--HHHHHHHHhhCCCcceeC-CCEEEE-----CCCcCcc
Confidence 4667777778898888888764122 21222344444 888999997 88888777 899999 88 9
Q ss_pred eEeecceeEeeCcEEEeceeeeecCCCCcCCcccCCCCCCCceeeccc-CCCCCCHHHHHHHHhccc
Q psy2898 155 KIASIGLKISAKGYVYHGVSINVSMDLEPFNNINPCGYPGLVIVDMKK-LGINTTISKVQHLFIKNF 220 (222)
Q Consensus 155 KIasiGv~i~~~~vt~HG~alNv~~dL~~f~~I~pCGl~~~~vTSL~~-lg~~~~~~~v~~~l~~~f 220 (222)
|||.|=+... .....=|+.|||+++ | |-.++ ...|||.+ .+.+++.+++...+.++|
T Consensus 106 Kl~GIL~E~~-~~~vViGiGiNv~~~---~----p~~l~-~~atsL~~~~~~~~~r~~ll~~ll~~l 163 (237)
T 2ej9_A 106 KLGGILTELT-DDYMIIGIGINVNNQ---I----RNEIR-EIAISLKEITGKELDKVEILSNFLKTF 163 (237)
T ss_dssp EEEEEEEEEC-SSEEEEEEEECSSSC---C----CGGGG-GTBCCHHHHHSSCCCHHHHHHHHHHHH
T ss_pred EeeEEEEecC-CCeEEEEEEEecCCC---C----cchhh-hhhccHhHhHCCCCCHHHHHHHHHHHH
Confidence 9999988876 777889999999987 2 32332 36899986 688899999888887766
No 14
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=98.14 E-value=2e-05 Score=69.94 Aligned_cols=124 Identities=17% Similarity=0.237 Sum_probs=77.2
Q ss_pred CcCCCceeeCCC-CeEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhcCCc-ceecCCCCcEEEecCCCCCCeEe
Q psy2898 80 DRGGEVTYHGPG-QAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNIN-CKRKKNAPGVYIANGPFSGAKIA 157 (222)
Q Consensus 80 ~RGG~iTyHgPG-QLv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi~-a~~~~~~~GVwv~~~~~~~~KIa 157 (222)
-|.|..++--|| .|.+..++..+.. ......-.++..+ ++.++|+++|++ ...+. +|+||+ +++|||
T Consensus 117 GR~gr~W~Sp~g~~l~~S~~l~~~~~---~~~~~~l~l~~~~--av~~al~~~~~~~~~iKW-PNDi~~-----~g~Kl~ 185 (321)
T 1bia_A 117 GRRGRKWFSPFGANLYLSMFWRLEQG---PAAAIGLSLVIGI--VMAEVLRKLGADKVRVKW-PNDLYL-----QDRKLA 185 (321)
T ss_dssp --------CCTTSEEEEEEEEEECC----CCCTHHHHHHHHH--HHHHHHHHTTCTTCEEET-TTEEEE-----TTEEEE
T ss_pred CCCCCcccCCCCCCEEEEEEEccCCC---hHHHhhHHHHHHH--HHHHHHHHhCCCCccEeC-cceeeE-----CCeeEE
Confidence 577888888889 6888877755432 1112223345555 899999999984 66666 899999 999999
Q ss_pred ecceeEeeC----cEEEeceeeeecCCCCcCCcccCCCCCCCceeecccCCCCCCHHHHHHHHhccc
Q psy2898 158 SIGLKISAK----GYVYHGVSINVSMDLEPFNNINPCGYPGLVIVDMKKLGINTTISKVQHLFIKNF 220 (222)
Q Consensus 158 siGv~i~~~----~vt~HG~alNv~~dL~~f~~I~pCGl~~~~vTSL~~lg~~~~~~~v~~~l~~~f 220 (222)
+|=+..... ....=|+.|||+++. +| |-.++ ...|||.+.+.+++.+++...+.++|
T Consensus 186 GIL~E~~~~~~~~~~~viGiGiNv~~~~-~~----~~~~~-~~atsL~~~~~~~~r~~ll~~ll~~l 246 (321)
T 1bia_A 186 GILVELTGKTGDAAQIVIGAGINMAMRR-VE----ESVVN-QGWITLQEAGINLDRNTLAAMLIREL 246 (321)
T ss_dssp EEEEEEEC----CEEEEEEEEEECCC-----------------CCCTTTTTCCCCHHHHHHHHHHHH
T ss_pred EEEEEeeecCCCCcEEEEEEEEecCCCc-cc----cchhc-cccccHHhcCCCCCHHHHHHHHHHHH
Confidence 997776411 245679999999864 23 22232 35799988788899999888887765
No 15
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=97.70 E-value=0.00019 Score=60.99 Aligned_cols=112 Identities=8% Similarity=0.011 Sum_probs=75.9
Q ss_pred CC-CeEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhcCCc---ceecCCCCcEEEecCCCCCCeEeecceeEee
Q psy2898 90 PG-QAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNIN---CKRKKNAPGVYIANGPFSGAKIASIGLKISA 165 (222)
Q Consensus 90 PG-QLv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi~---a~~~~~~~GVwv~~~~~~~~KIasiGv~i~~ 165 (222)
|| .|.+..++..+.. ......-.++..+ ++.++|++++.. ...+. +|+||+ +++|||.|=+....
T Consensus 45 ~g~~L~~S~~l~~~~~---~~~~~~lsl~~al--Av~~aL~~~~~~~~~~~iKW-PNDI~~-----~gkKl~GIL~E~~~ 113 (235)
T 3bfm_A 45 GTDVLRAALVLAPEVP---LAKAMAMLPVCGV--GFQNALGALAPPEVAVHLDW-NGALRI-----NGARCGRLRIAAST 113 (235)
T ss_dssp CSSEEEEEEEECCSSC---HHHHTTHHHHHHH--HHHHHHHHHSCTTCCEEECT-TSEEEE-----TTEEEEEEEEEESC
T ss_pred CCCCEEEEEEecCCCC---HHHHHHHHHHHHH--HHHHHHHHhcCCCcceEecC-CCeEEE-----CCeEEEEEEEEeec
Confidence 66 5767777544321 0011122345555 888999987653 55555 899999 89999999777652
Q ss_pred C------cEEEeceeeeecCCCCcCCcccCCCCCCCceeeccc-CCCCCCHHHHHHHHhccc
Q psy2898 166 K------GYVYHGVSINVSMDLEPFNNINPCGYPGLVIVDMKK-LGINTTISKVQHLFIKNF 220 (222)
Q Consensus 166 ~------~vt~HG~alNv~~dL~~f~~I~pCGl~~~~vTSL~~-lg~~~~~~~v~~~l~~~f 220 (222)
. ....=|+.||+++.. ++ ++. ...|||.+ .+.+++.+++...+.++|
T Consensus 114 ~~~~~~~~~vViGIGiNv~~~~--~~-----~~~-~~atsL~~~~~~~~~r~~ll~~ll~~l 167 (235)
T 3bfm_A 114 DDPDTQPDWLVVGLDLPLWPEG--DG-----GET-PDETALYAEGCADVAAPRLLESWARHC 167 (235)
T ss_dssp CCTTSCCSCEEEEEEEESSCCC--SS-----CCC-CCSCCGGGTTCTTCCHHHHHHHHHHHH
T ss_pred cCCCCCccEEEEEEEEEcCCCC--cc-----ccc-ccccchhHhhCCCCCHHHHHHHHHHHH
Confidence 1 256789999999762 22 332 36899977 678899999988888766
No 16
>2ddz_A 190AA long hypothetical protein; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; 2.24A {Pyrococcus horikoshii} SCOP: d.104.1.4
Probab=92.34 E-value=0.38 Score=39.65 Aligned_cols=81 Identities=20% Similarity=0.394 Sum_probs=55.4
Q ss_pred HHHHHHHHHhhcCCcceecCCCCcEEEecCCCCCCeEeecceeEeeCcEEEeceeeeecCCCCcCCcccCCCCC-CCcee
Q psy2898 120 IEEAVILTMSQYNINCKRKKNAPGVYIANGPFSGAKIASIGLKISAKGYVYHGVSINVSMDLEPFNNINPCGYP-GLVIV 198 (222)
Q Consensus 120 Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~~~~~~KIasiGv~i~~~~vt~HG~alNv~~dL~~f~~I~pCGl~-~~~vT 198 (222)
|-..+.++|.++|++..|.- .++|+ +++|+. +-++...---+.==+++||+.+ |.+ +....
T Consensus 91 lv~i~kE~L~~~g~~~~R~G--DDLy~-----~~~KLS-VSIAt~s~vS~kIH~GiNV~s~----------g~P~~V~ai 152 (190)
T 2ddz_A 91 LIARLVELLWNYGIEASRRG--DDIYV-----NGRKLS-ISIATVSPVSIKIHIGLNVKTV----------GVPPGVDAI 152 (190)
T ss_dssp HHHHHHHHHHTTTCCEEEET--TEEEE-----TTEECE-EEEEEECSSCEEEEEEEESCCS----------SCCSSSCBC
T ss_pred HHHHHHHHHHHcCCeeeecc--CeeeE-----CCCEEE-EEEEecCcchheEEEEEeeccc----------CCCCCcccc
Confidence 44566788889999988663 79999 888863 3344441222222388999987 333 35678
Q ss_pred ecccCCCCCCHHHHHHHHhccc
Q psy2898 199 DMKKLGINTTISKVQHLFIKNF 220 (222)
Q Consensus 199 SL~~lg~~~~~~~v~~~l~~~f 220 (222)
+|.++|. ++.++.+.+..++
T Consensus 153 gL~dlGi--~i~~~~~~i~~~y 172 (190)
T 2ddz_A 153 GLEELGI--DPTEFMERSAKAL 172 (190)
T ss_dssp CHHHHTC--CHHHHHHHHHHHH
T ss_pred CHHHcCC--CHHHHHHHHHHHH
Confidence 8999886 7777777776654
No 17
>2iru_A Putative DNA ligase-like protein RV0938/MT0965; polymerase, primase, NHEJ, transferase; 1.65A {Mycobacterium tuberculosis} PDB: 2irx_A* 2iry_A* 2r9l_A* 3pky_A*
Probab=25.66 E-value=1.5e+02 Score=25.80 Aligned_cols=59 Identities=17% Similarity=0.225 Sum_probs=39.0
Q ss_pred CCceeeCCCCeE-E-------------EEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhcCCcceec-CCCCcEEE
Q psy2898 83 GEVTYHGPGQAI-I-------------YLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRK-KNAPGVYI 146 (222)
Q Consensus 83 G~iTyHgPGQLv-~-------------YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi~a~~~-~~~~GVwv 146 (222)
|-+.+|-++..+ . ..++||.-. .+.++.+-++ ....+-+.|+++|+++..+ .|..|+-|
T Consensus 109 g~lE~H~w~~r~~~~~~~~~~~~~~PD~lvfDLDP~----~~~~f~~v~~-aA~~~r~~L~~lGL~~f~KTSGgkGlHV 182 (303)
T 2iru_A 109 AALEVHVPQWRFVAEPGSGELNPGPATRLVFDLDPG----EGVMMAQLAE-VARAVRDLLADIGLVTFPVTSGSKGLHL 182 (303)
T ss_dssp TCCEEEECSEEEEECTTTCCEEEEEEEEEEEEEEEC----TTCCHHHHHH-HHHHHHHHHHTTTCCCEEEECSSSCEEE
T ss_pred CcEeeeCCccccccccccccCCCCCCCEEEEECCCC----CCCCHHHHHH-HHHHHHHHHHHcCCccceEccCCCeEEE
Confidence 556677666555 3 668999753 1456554433 3345779999999998766 66677755
No 18
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=20.79 E-value=43 Score=23.48 Aligned_cols=41 Identities=27% Similarity=0.501 Sum_probs=26.9
Q ss_pred eceeeeecCCCCcCCcccCCCCCCCceeecccCCCCCCHHHHHHHHhcccc
Q psy2898 171 HGVSINVSMDLEPFNNINPCGYPGLVIVDMKKLGINTTISKVQHLFIKNFF 221 (222)
Q Consensus 171 HG~alNv~~dL~~f~~I~pCGl~~~~vTSL~~lg~~~~~~~v~~~l~~~f~ 221 (222)
||.-+||+.|++.|. + +.-.|+ +-..+++.++.+.+.++|.
T Consensus 1 ~~~yI~ITidl~~y~--------~-~~~DLR-IP~~~tvK~Li~~l~ea~~ 41 (81)
T 2bps_A 1 HGSYIDITIDLKHYN--------G-SVFDLR-LSDYHPVKKVIDIAWQAQS 41 (81)
T ss_dssp CCCEEEEEEECTTTT--------C-CEEEEE-EETTSBTTHHHHHHHHHSC
T ss_pred CCcEEEEEEEeeccC--------C-ceEEEE-CCCchhHHHHHHHHHHHhC
Confidence 899999999998764 1 122221 2345677778777777664
Done!