Query psy2898
Match_columns 222
No_of_seqs 144 out of 1047
Neff 6.3
Searched_HMMs 13730
Date Fri Aug 16 20:25:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2898.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2898hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1w66a1 d.104.1.3 (A:1-216) Li 100.0 2.3E-70 1.6E-74 466.8 19.7 203 6-221 5-208 (216)
2 d2p0la1 d.104.1.3 (A:4-272) Li 100.0 4E-29 2.9E-33 217.7 12.0 194 18-221 18-240 (269)
3 d2c8ma1 d.104.1.3 (A:1-256) Li 100.0 5.1E-28 3.7E-32 207.9 15.8 188 21-221 12-219 (256)
4 d1vqza2 d.104.1.3 (A:1-241) Lp 99.9 2.1E-27 1.6E-31 202.1 16.4 185 21-221 9-206 (241)
5 d2p5ia1 d.104.1.3 (A:14-278) H 99.9 2.4E-27 1.8E-31 205.6 12.7 189 21-221 14-231 (265)
6 d1x2ga2 d.104.1.3 (A:1-246) Tw 99.9 2E-26 1.4E-30 196.8 15.1 194 13-221 3-208 (246)
7 d2zgwa2 d.104.1.2 (A:1-188) Bi 98.8 1E-08 7.5E-13 83.3 10.0 118 79-220 46-164 (188)
8 d1biaa3 d.104.1.2 (A:64-270) B 98.1 1.3E-05 9.6E-10 65.0 12.3 124 80-220 54-183 (207)
9 d2ddza1 d.104.1.4 (A:3-190) Un 92.3 0.17 1.3E-05 39.7 7.0 85 116-220 85-170 (188)
10 d1b24a2 d.95.2.1 (A:100-179) D 56.0 5.8 0.00042 25.9 3.6 28 119-146 34-63 (80)
11 d2ok5a4 g.18.1.1 (A:9-76) Comp 22.6 16 0.0011 23.5 1.3 19 80-98 11-29 (68)
No 1
>d1w66a1 d.104.1.3 (A:1-216) Lipoyltransferase LipB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=100.00 E-value=2.3e-70 Score=466.82 Aligned_cols=203 Identities=28% Similarity=0.515 Sum_probs=188.6
Q ss_pred ccCCCceeEEEECCccchHHHHHHHHHHHHhhcCCCCCeEEEEecCCeeeeccCCCcccccccccCCCcCEEEeCcCCCc
Q psy2898 6 ISSTYSNLQIIQRGLEPYIVSFNAMLLFNSNRTNYTIDQLWFVEHFPVYTLGLKSNFSHILISKKLNNIPIIRTDRGGEV 85 (222)
Q Consensus 6 ~~~~~~~~~~~~lG~~~Y~~a~~~q~~~~~~~~~~~~d~lll~EH~Pv~T~Gr~~~~~~ll~~~~~~gi~v~~~~RGG~i 85 (222)
+.+....+.+++||++||+++|++|+++++.+.+..+|++||||||||||+|++++.++++.. ++||++|+|||++
T Consensus 5 ~~~~~~~i~i~~LG~v~Y~~a~~~q~~~~~~~~~~~~d~llllEH~pVyT~G~~~~~~~~~~~----~i~v~~tdRGG~v 80 (216)
T d1w66a1 5 IRSKLSAIDVRQLGTVDYRTAWQLQRELADARVAGGADTLLLLEHPAVYTAGRRTETHERPID----GTPVVDTDRGGKI 80 (216)
T ss_dssp CBSCCSCCEEEEEEECCHHHHHHHHHHHHHHHHTTCCCEEEEEECCSEEEECTTCCGGGSCTT----CCCCEECSSSSSE
T ss_pred hhhcCCceEEEECCccCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCceeecccCcccccccc----ccceeecCCCceE
Confidence 445577899999999999999999999999887778999999999999999999998887654 7999999999999
Q ss_pred eeeCCCCeEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhcCCcceecCCCCcEEEecCCCCCCeEeecceeEee
Q psy2898 86 TYHGPGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANGPFSGAKIASIGLKISA 165 (222)
Q Consensus 86 TyHgPGQLv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~~~~~~KIasiGv~i~~ 165 (222)
|||||||||+|||+||++ ..++++|++.||+++|++|++||+++.+.++.+|||+... .++||||||++++
T Consensus 81 TyHGPGQlV~Ypil~l~~------~~~~~~~v~~le~~ii~~l~~~gi~~~~~~~~~GVwv~~~--~~~KIasiGv~v~- 151 (216)
T d1w66a1 81 TWHGPGQLVGYPIIGLAE------PLDVVNYVRRLEESLIQVCADLGLHAGRVDGRSGVWLPGR--PARKVAAIGVRVS- 151 (216)
T ss_dssp EEECTTEEEEEEECBBCS------SCCHHHHHHHHHHHHHHHHHHTTCCCEEETTEEEEEECSS--SCEEEEEEEEEEE-
T ss_pred EEecCCceeeEEEecccc------ccchhhhHHHHHHHHHHHHHhccccccccccCCceeeecc--hhhHHHHHHHHhc-
Confidence 999999999999999985 5699999999999999999999999999999999999321 3469999999999
Q ss_pred CcEEEeceeeeecCCCCcCCcccCCCCCCCceeeccc-CCCCCCHHHHHHHHhcccc
Q psy2898 166 KGYVYHGVSINVSMDLEPFNNINPCGYPGLVIVDMKK-LGINTTISKVQHLFIKNFF 221 (222)
Q Consensus 166 ~~vt~HG~alNv~~dL~~f~~I~pCGl~~~~vTSL~~-lg~~~~~~~v~~~l~~~f~ 221 (222)
+|+|+||+||||++||++|+.|+|||+++..||||++ +|.++++++|++.++++|+
T Consensus 152 ~~vt~HG~alNv~~dL~~f~~I~pCGl~~~~vtSl~~~lg~~v~~~ev~~~l~~~~~ 208 (216)
T d1w66a1 152 RATTLHGFALNCDCDLAAFTAIVPCGISDAAVTSLSAELGRTVTVDEVRATVAAAVC 208 (216)
T ss_dssp TTEEEEEEEEESSCCCGGGGGSCGGGCSSSEECCHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred cceeecceEEeccCChhhcCeEEcCCCCCCceeeeHHHhCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999976 8999999999999999885
No 2
>d2p0la1 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Streptococcus agalactiae [TaxId: 1311]}
Probab=99.96 E-value=4e-29 Score=217.66 Aligned_cols=194 Identities=14% Similarity=0.078 Sum_probs=156.2
Q ss_pred CCccchHHHHHHHHHHHHhhc-CCCCCeEEEEecCCeeeeccCCCcccccc--cc--cCCCcCEEEeCcCCCceeeCCCC
Q psy2898 18 RGLEPYIVSFNAMLLFNSNRT-NYTIDQLWFVEHFPVYTLGLKSNFSHILI--SK--KLNNIPIIRTDRGGEVTYHGPGQ 92 (222)
Q Consensus 18 lG~~~Y~~a~~~q~~~~~~~~-~~~~d~lll~EH~Pv~T~Gr~~~~~~ll~--~~--~~~gi~v~~~~RGG~iTyHgPGQ 92 (222)
.+..+.++.+++++.+.+... +...++|+|++|+|++++|++++...-+. .+ +..|++++|+.+||+++||+|||
T Consensus 18 ~~~~d~~~~la~~e~ll~~v~~~~~~~~l~~w~~~ptvvlG~~q~~~~~~e~~~~~~~~~gi~vvRR~sGGgaV~hd~G~ 97 (269)
T d2p0la1 18 TDAQDAEKPFIWTEVFLREINRSNQEIILHIWPMTKTVILGMLDRELPHLELAKKEIISRGYEPVVRNFGGLAVVADEGI 97 (269)
T ss_dssp CSGGGTTHHHHHHHHHHHHHHHSCSCEEEEECCBSSEEEECTTGGGCTTHHHHHHHHHTTTCEEEECTTCCSCEEESTTE
T ss_pred cCCCCHHHHHHHHHHHHHHhccCCCCCEEEEecCCCEEEECCCcCcCchHHHHHHHHHHcCCcEEEecCCCceEEECCCc
Confidence 577899999999999998843 45678899999999999999976432121 11 35699999999999999999999
Q ss_pred eEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhcCCcceecC-------CCCcEEEecCCCCCCeEeecceeEee
Q psy2898 93 AIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKK-------NAPGVYIANGPFSGAKIASIGLKISA 165 (222)
Q Consensus 93 Lv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi~a~~~~-------~~~GVwv~~~~~~~~KIasiGv~i~~ 165 (222)
|+.++|++.... ...++.++.+.++++++++|+.+|+++...+ +..+|++ +++||++++.+.+
T Consensus 98 l~~s~i~p~~~~----~~~~i~~~y~~~~~~i~~~L~~lGi~a~~~~~~~~~c~g~~Dl~v-----~grKi~G~Aqr~~- 167 (269)
T d2p0la1 98 LNFSLVIPDVFE----RKLSISDGYLIMVDFIRSIFSDFYQPIEHFEVETSYCPGKFDLSI-----NGKKFAGLAQRRI- 167 (269)
T ss_dssp EEEEEEEESCC-------CCHHHHHHHHHHHHHHHTTTSCSCCEECCCTTSSSCCTTCEEE-----TTEEEEEEEEEEE-
T ss_pred EEEEEEEecccc----cCCCHHHHHHHHHHHHHHHHHHcCCceEEecccCCCCCCceeEEe-----cCeEEEEEeEEEE-
Confidence 999999875432 1568999999999999999999999988763 6788999 8999999999999
Q ss_pred CcEEEeceeeeecCCCCc----CCc-----ccCCCCC-------CCceeeccc-CCCCCCHHHHHHHHhcccc
Q psy2898 166 KGYVYHGVSINVSMDLEP----FNN-----INPCGYP-------GLVIVDMKK-LGINTTISKVQHLFIKNFF 221 (222)
Q Consensus 166 ~~vt~HG~alNv~~dL~~----f~~-----I~pCGl~-------~~~vTSL~~-lg~~~~~~~v~~~l~~~f~ 221 (222)
++..+|+.+|+++.|+.. +.. +..++.+ -.+||||++ ++.++++++++++|+++|.
T Consensus 168 r~~~l~hgtllv~~d~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~vtsL~~~L~~~~s~e~v~~~l~~~f~ 240 (269)
T d2p0la1 168 KNGIAVSIYLSVCGDQKGRSQMISDFYKIGLGDTGSPIAYPNVDPEIMANLSDLLDCPMTVEDVIDRMLISLK 240 (269)
T ss_dssp TTEEEEEEEEECSSCHHHHHHHHHHHHHHHHTTTCCSSCCCCCCTTSBCCHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEEEeCCHHHHHHHHHHHHhhcccccccccccCccchhheeeHHHHcCCCCCHHHHHHHHHHHHH
Confidence 888888888999998642 111 1223322 245999999 8999999999999998874
No 3
>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma acidophilum [TaxId: 2303]}
Probab=99.95 E-value=5.1e-28 Score=207.90 Aligned_cols=188 Identities=15% Similarity=0.175 Sum_probs=143.2
Q ss_pred cchHHHHHHHHHHHHhhcCCCCCeEEEEecCCeeeeccCCCcccccccc--cCCCcCEEEeCcCCCceeeCCCCeEEEEe
Q psy2898 21 EPYIVSFNAMLLFNSNRTNYTIDQLWFVEHFPVYTLGLKSNFSHILISK--KLNNIPIIRTDRGGEVTYHGPGQAIIYLL 98 (222)
Q Consensus 21 ~~Y~~a~~~q~~~~~~~~~~~~d~lll~EH~Pv~T~Gr~~~~~~ll~~~--~~~gi~v~~~~RGG~iTyHgPGQLv~YpI 98 (222)
-+....+++.+.+.+.......++|++++|.|++++|++++.+..++.+ +..||||+|+.+||+++||||||++.|+|
T Consensus 12 ~~~~~nmA~de~Ll~~~~~~~~p~lr~~~~~p~v~iG~~q~~~~ev~~~~~~~~gi~vvRR~tGGgaV~hd~g~l~~s~i 91 (256)
T d2c8ma1 12 GNTRMSLAYDEAIYRSFQYGDKPILRFYRHDRSVIIGYFQVAEEEVDLDYMKKNGIMLARRYTGGGAVYHDLGDLNFSVV 91 (256)
T ss_dssp TCHHHHHHHHHHHHHHCCTTSCCEEEEECCSSEEEECTTCCHHHHSCHHHHHHTTCEEEECSSCSCCEEECTTEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhccCCCCCEEEEEcCCCeEEECCCCChhhhhCHHHHHhCCCcEEEEecCCceEEECCCCeEEEEE
Confidence 4555677788888877555567799999999999999999877655433 24699999999999999999999999999
Q ss_pred eecCcccccccCCcHHHHHHHHHHHHHHHHhhcCCcceecC---------CCCcEEEecCCCCCCeEeecceeEeeCcEE
Q psy2898 99 IDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKK---------NAPGVYIANGPFSGAKIASIGLKISAKGYV 169 (222)
Q Consensus 99 l~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi~a~~~~---------~~~GVwv~~~~~~~~KIasiGv~i~~~~vt 169 (222)
++... .++.++.+.++++++++|+++||+++..+ +..++++ +++||++++++.+ ++.+
T Consensus 92 ~~~~~-------~~~~~~y~~~~~~i~~~l~~lGi~a~~~~~~~~~~~~~~~~di~~-----~~~Ki~G~a~~~~-~~~~ 158 (256)
T d2c8ma1 92 RSSDD-------MDITSMFRTMNEAVVNSLRILGLDARPGELNDVSIPVNKKTDIMA-----GEKKIMGAAGAMR-KGAK 158 (256)
T ss_dssp EECSS-------CCHHHHHHHHHHHHHHHHHHTTCCCEECCBCCTTSSSSBTTSEEE-----TTEEEEEEEEEEE-TTEE
T ss_pred EccCC-------CCHHHHHHHHHHHHHHHHhhcCceEEEcCcCCeEEEeccCCcccc-----ccceecccccccc-ccEE
Confidence 87653 47889999999999999999999986542 2346777 8999999999999 9999
Q ss_pred EeceeeeecCCCCc---CCcccCCCCCCCceeeccc-C-----CCCCCHHHHHHHHhcccc
Q psy2898 170 YHGVSINVSMDLEP---FNNINPCGYPGLVIVDMKK-L-----GINTTISKVQHLFIKNFF 221 (222)
Q Consensus 170 ~HG~alNv~~dL~~---f~~I~pCGl~~~~vTSL~~-l-----g~~~~~~~v~~~l~~~f~ 221 (222)
+|+.+|+++.|++. +..+.||++.++.++|+.+ . ..+++++++.+.|+++|+
T Consensus 159 l~hgtll~~~d~~~l~~~L~~~~~~~~~~~~~s~~~~vt~L~~~~~~~~e~~~~~l~~~f~ 219 (256)
T d2c8ma1 159 LWHAAMLVHTDLDMLSAVLKVPDEKFRDKIAKSTRERVANVTDFVDVSIDEVRNALIRGFS 219 (256)
T ss_dssp EEEEEEESSCCHHHHHHHTC---------------CCBCCGGGTSCCCHHHHHHHHHHHHH
T ss_pred EEEeEeecCCCHHHHHHHhCCCccchhhhcccchHhhcccHHhcCCCCHHHHHHHHHHHHH
Confidence 99999999999864 3457789998876655543 1 236899999999998875
No 4
>d1vqza2 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=99.95 E-value=2.1e-27 Score=202.15 Aligned_cols=185 Identities=14% Similarity=0.152 Sum_probs=149.0
Q ss_pred cchHHHHHHHHHHHHhhcCCCCCeEEEEecCCeeeeccCCCcccccccc--cCCCcCEEEeCcCCCceeeCCCCeEEEEe
Q psy2898 21 EPYIVSFNAMLLFNSNRTNYTIDQLWFVEHFPVYTLGLKSNFSHILISK--KLNNIPIIRTDRGGEVTYHGPGQAIIYLL 98 (222)
Q Consensus 21 ~~Y~~a~~~q~~~~~~~~~~~~d~lll~EH~Pv~T~Gr~~~~~~ll~~~--~~~gi~v~~~~RGG~iTyHgPGQLv~YpI 98 (222)
.+-...+++.+.+.+.... ...+|+|++|+|++++|+++++...++.+ +..|||++|+.+||+++||||||++.+.|
T Consensus 9 ~d~~~nmA~de~Ll~~~~~-~~~~l~~~~~~p~v~iG~~q~~~~e~~~~~~~~~gi~vvRR~tGGgaV~h~~g~~~~s~i 87 (241)
T d1vqza2 9 NDTAFNIALEEYAFKHLLD-EDQIFLLWINKPSIIVGRHQNTIEEINRDYVRENGIEVVRRISGGGAVYHDLNNLNYTII 87 (241)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CSEEEEEECCSSEEEECTTCCGGGTBCHHHHHHHTCEEEECSSCSCCEEECTTEEEEEEE
T ss_pred CCHHHHHHHHHHHHhcCCC-CCCEEEEEcCCCEEEECCCCChhhhhCHHHHHHCCCeEEEEcCCCceEEECCCCeEEEEE
Confidence 3444556666766665333 35678899999999999999987766543 23599999999999999999999988888
Q ss_pred eecCcccccccCCcHHHHHHHHHHHHHHHHhhcCCcceecCCCCcEEEecCCCCCCeEeecceeEeeCcEEEeceeeeec
Q psy2898 99 IDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANGPFSGAKIASIGLKISAKGYVYHGVSINVS 178 (222)
Q Consensus 99 l~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~~~~~~KIasiGv~i~~~~vt~HG~alNv~ 178 (222)
++.... ...+ .+.+.+.++++|+.+|++++... .+++|+ +++||++++++.+ ++..+|+.+|+++
T Consensus 88 ~~~~~~----~~~~----~~~~~~~i~~al~~~g~~a~~~~-~~d~~v-----~g~Ki~G~aq~~~-~~~~l~hgsll~~ 152 (241)
T d1vqza2 88 SKEDEN----KAFD----FKSFSTPVINTLAQLGVKAEFTG-RNDLEI-----DGKKFCGNAQAYI-NGRIMHHGCLLFD 152 (241)
T ss_dssp EECCTT----CCCS----HHHHHHHHHHHHHHTTCCEEEET-TTEEEE-----TTEEEEEEEEEEE-TTEEEEEEEEESS
T ss_pred ecCccc----hHHH----HHHHHHHHHHHHHHhccceEEec-cCCEEE-----CCEEEeeEEEEEe-CCeEEEEEEEEec
Confidence 766543 1223 45677799999999999998765 799999 9999999999999 9999999999999
Q ss_pred CCCCc---CCcccCCCCCCCc-------eeeccc-CCCCCCHHHHHHHHhcccc
Q psy2898 179 MDLEP---FNNINPCGYPGLV-------IVDMKK-LGINTTISKVQHLFIKNFF 221 (222)
Q Consensus 179 ~dL~~---f~~I~pCGl~~~~-------vTSL~~-lg~~~~~~~v~~~l~~~f~ 221 (222)
+|++. +.++.||++.++. ||||.+ ++.+++++++++.++++|+
T Consensus 153 ~d~~~~~~~l~~~~~~~~~~~~~s~~~~v~~l~~~l~~~~~~e~~~~~l~~~f~ 206 (241)
T d1vqza2 153 VDLSVLANALKVSKDKFESKGVKSVRARVTNIINELPKKITVEKFRDLLLEYMK 206 (241)
T ss_dssp CCTTHHHHHBCCCSSCCEECSCCCCCCCBCCGGGTCSSCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCcccchhhccccchhhccchHHHhCCCCCHHHHHHHHHHHHH
Confidence 99875 3457789987644 677776 7889999999999998874
No 5
>d2p5ia1 d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacillus halodurans [TaxId: 86665]}
Probab=99.94 E-value=2.4e-27 Score=205.64 Aligned_cols=189 Identities=15% Similarity=0.064 Sum_probs=150.8
Q ss_pred cchHHHHHHHHHHHHhhc-CCCCCeEEEEecCCeeeeccCCCccccc--cc--ccCCCcCEEEeCcCCCceeeCCCCeEE
Q psy2898 21 EPYIVSFNAMLLFNSNRT-NYTIDQLWFVEHFPVYTLGLKSNFSHIL--IS--KKLNNIPIIRTDRGGEVTYHGPGQAII 95 (222)
Q Consensus 21 ~~Y~~a~~~q~~~~~~~~-~~~~d~lll~EH~Pv~T~Gr~~~~~~ll--~~--~~~~gi~v~~~~RGG~iTyHgPGQLv~ 95 (222)
.|..++++.++.+.+... +..+++|.|++|+|++|+|++++....+ +. .+..||||+++.+||+++||+|||++.
T Consensus 14 ~~~~~~~A~de~Ll~~~~~~~~~p~lr~~~~~ptv~lG~~q~~~~~~~~~~~~~~~~gi~vvRR~tGGgaV~hd~g~l~~ 93 (265)
T d2p5ia1 14 FQALQSFAYDDTLCTSIGKSQSPPTLRAWVHHNTVVLGIQDSRLPQIKAGIEALKGFQHDVIVRNSGGLAVVLDSGILNL 93 (265)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSSCCEEEEECCSSEEEEEHHHHTSTTHHHHHHHHHHTTCEEEEESSCCCCEEECTTEEEE
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCEEEECCCCCCCcchhhHHHHHHHcCCeEEEecCCCceEEEcCCCcEE
Confidence 356778899999988854 4578999999999999999998753211 11 124599999999999999999999999
Q ss_pred EEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhcCCcceecC-------CCCcEEEecCCCCCCeEeecceeEeeCcE
Q psy2898 96 YLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKK-------NAPGVYIANGPFSGAKIASIGLKISAKGY 168 (222)
Q Consensus 96 YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi~a~~~~-------~~~GVwv~~~~~~~~KIasiGv~i~~~~v 168 (222)
++|+..+. ..++.++.+.++++++++|+.+|++++..+ ++.+|++ +++||++++++.+ ++.
T Consensus 94 s~i~~~~~------~~~~~~~y~~~~~~i~~~l~~lGi~a~~~~~~~~~c~g~~Dl~v-----~g~Ki~G~Aq~~~-~~~ 161 (265)
T d2p5ia1 94 SLVLKEEK------GFSIDDGYELMYELICSMFQDHREQIEAREIVGSYCPGSYDLSI-----DGKKFAGISQRRI-RGG 161 (265)
T ss_dssp EEEEECCT------TCCHHHHHHHHHHHHHHHTC---CCCEECCCTTSSSCCTTCEEE-----TTEEEEEEEEEEE-TTE
T ss_pred EEEEcccc------cccHHHHHHHHHHHHHHHHHHcCCceEEccccCCCCCCCCceEE-----CCEEEEEEeEEEE-CCE
Confidence 99988654 458888889999999999999999987663 5678999 8999999999999 777
Q ss_pred EEeceeeeecCCCCcCCc----------------ccCCCCCCCceeeccc-CCCCCCHHHHHHHHhcccc
Q psy2898 169 VYHGVSINVSMDLEPFNN----------------INPCGYPGLVIVDMKK-LGINTTISKVQHLFIKNFF 221 (222)
Q Consensus 169 t~HG~alNv~~dL~~f~~----------------I~pCGl~~~~vTSL~~-lg~~~~~~~v~~~l~~~f~ 221 (222)
.+|+.+|+++.|++.... -+.|......||||++ ++.+++++++++.+.++|.
T Consensus 162 ~l~hgsll~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vtsL~~~l~~~~~~~~v~~~l~~~f~ 231 (265)
T d2p5ia1 162 VAVQIYLCVSGSGAERAKMIRTFYDKAVAGQPTKFVYPRIKPETMASLSELLGQPHNVSDVLLKALMTLQ 231 (265)
T ss_dssp EEEEEEEECSSCHHHHHHHHHHHHHHHHTTSCCSSCCCCCCGGGBCCHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred EEEEEEEEecCCHHHHHHHHhccchhhhccccccccccccchhhcCcHHHHhCCCCCHHHHHHHHHHHHH
Confidence 777779999988654221 1234444456999999 8999999999999998874
No 6
>d1x2ga2 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.94 E-value=2e-26 Score=196.84 Aligned_cols=194 Identities=12% Similarity=0.137 Sum_probs=150.3
Q ss_pred eEEEECCccchHHHHHHHHHHHHhhcCCCCCeEEEEecCCeeeeccCCCcccccccc--cCCCcCEEEeCcCCCceeeCC
Q psy2898 13 LQIIQRGLEPYIVSFNAMLLFNSNRTNYTIDQLWFVEHFPVYTLGLKSNFSHILISK--KLNNIPIIRTDRGGEVTYHGP 90 (222)
Q Consensus 13 ~~~~~lG~~~Y~~a~~~q~~~~~~~~~~~~d~lll~EH~Pv~T~Gr~~~~~~ll~~~--~~~gi~v~~~~RGG~iTyHgP 90 (222)
+++...+-.+=...+++.+.+.+... ....+|++++|+|++|+|+++++...++.+ +..||||+|+.+||+++||+|
T Consensus 3 ~rii~~~~~d~~~NlA~de~Ll~~~~-~~~~~l~~~~~~p~v~lG~~Q~~~~ev~~~~~~~~gi~vvRR~tGGgaV~hd~ 81 (246)
T d1x2ga2 3 LRLLISDSYDPWFNLAVEECIFRQMP-ATQRVLFLWRNADTVVIGRAQNPWKECNTRRMEEDNVRLARRSSGGGAVFHDL 81 (246)
T ss_dssp EEEEEECCCCHHHHHHHHHHHHHTSC-TTSEEEEEECCSSEEEECTTCCHHHHBCHHHHHHHTCEEEECSSCCCCEEECT
T ss_pred EEEEECCCCCHHHHHHHHHHHHhcCC-CCCcEEEEEcCCCEEEECCCCChhHhhCHHHHHHCCCeEEEEcCCCcEEEeCC
Confidence 44444443443355666666665433 334689999999999999999876544433 135999999999999999999
Q ss_pred CCeEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhcCCcceecCCCCcEEEecCCCCCCeEeecceeEeeCcEEE
Q psy2898 91 GQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANGPFSGAKIASIGLKISAKGYVY 170 (222)
Q Consensus 91 GQLv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~~~~~~KIasiGv~i~~~~vt~ 170 (222)
||+++|+|++.+.. . ...+++.++++|+.+|+++.... .++++++. ..+++||++++++.+ ++..+
T Consensus 82 g~~~~s~i~~~~~~-------~----~~~~~~~i~~~l~~lgi~a~~~~-~~~~~~~~-~~~gkKi~G~aq~~~-~~~~l 147 (246)
T d1x2ga2 82 GNTCFTFMAGKPEY-------D----KTISTSIVLNALNALGVSAEASG-RNDLVVKT-VEGDRKVSGSAYRET-KDRGF 147 (246)
T ss_dssp TEEEEEEEEETTTC-------C----HHHHHHHHHHHHHHTTCCEEEET-TTEEEECC-TTCCEEEEEEEEEEC-SSEEE
T ss_pred CCEEEEEEecCchh-------h----HHHHHHHHHHHHHhcCCceeecC-ccceeEec-ccCceEEEeEEEEEE-CCEEE
Confidence 99999999876643 2 34578899999999999988654 68877732 125899999999999 99999
Q ss_pred eceeeeecCCCCcCC---cccCCCCCCC-------ceeecccCCCCCCHHHHHHHHhcccc
Q psy2898 171 HGVSINVSMDLEPFN---NINPCGYPGL-------VIVDMKKLGINTTISKVQHLFIKNFF 221 (222)
Q Consensus 171 HG~alNv~~dL~~f~---~I~pCGl~~~-------~vTSL~~lg~~~~~~~v~~~l~~~f~ 221 (222)
|+.+|+++.|++.+. .+.||++.++ .||+|+++..+++++++.+.|+++|+
T Consensus 148 ~hgsi~~~~d~~~~~~~l~~~~~~~~~~~~~s~~~~vt~l~e~~~~i~~e~~~~~l~~~f~ 208 (246)
T d1x2ga2 148 HHGTLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITEAFF 208 (246)
T ss_dssp EEEEEESSCCSSGGGGGBCCCHHHHHCCC------CBCCGGGTCTTCCHHHHHHHHHHHHH
T ss_pred EeCEEeecCCHHHHHhhcCCCccchhhhcccchhhhCcCHHHhCCCCCHHHHHHHHHHHHH
Confidence 999999999987655 4556887664 57888887778999999999998874
No 7
>d2zgwa2 d.104.1.2 (A:1-188) Biotin--[acetyl-CoA-carboxylase] ligase catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=98.81 E-value=1e-08 Score=83.32 Aligned_cols=118 Identities=17% Similarity=0.158 Sum_probs=93.3
Q ss_pred eCcCCCceeeCCCCeEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhcCCcceecCCCCcEEEecCCCCCCeEee
Q psy2898 79 TDRGGEVTYHGPGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANGPFSGAKIAS 158 (222)
Q Consensus 79 ~~RGG~iTyHgPGQLv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~~~~~~KIas 158 (222)
+-|.|..+..-+|.+.+..++..+.. ...+..+.-...-+++++|++++++...+- +++|++ +++|||+
T Consensus 46 rGR~gr~W~sp~g~l~~S~~~~~~~~-----~~~~~~l~~~~~~av~~~l~~~~~~~~iKW-PNDI~~-----~~kKi~G 114 (188)
T d2zgwa2 46 HGALNRKWESPEGGLWLSIVLSPKVP-----QKDLPKIVFLGAVGVVETLKEFSIDGRIKW-PNDVLV-----NYKAIAG 114 (188)
T ss_dssp BCGGGCBCCCCTTSEEEEEEECCCSC-----TTTGGGHHHHHHHHHHHHHHHTTCCCEEET-TTEEEE-----TTEEEEE
T ss_pred CCCCCCCCcCCccccceEEEeecccc-----hhhhhhhhHHHHHHHHHhhhhcccceeEEE-cchhee-----CCCceEE
Confidence 35778888888999888887655433 223334444455689999999999988777 899999 9999999
Q ss_pred cceeEeeCcEEEeceeeeecCCCCcCCcccCCCCCCCceeeccc-CCCCCCHHHHHHHHhccc
Q psy2898 159 IGLKISAKGYVYHGVSINVSMDLEPFNNINPCGYPGLVIVDMKK-LGINTTISKVQHLFIKNF 220 (222)
Q Consensus 159 iGv~i~~~~vt~HG~alNv~~dL~~f~~I~pCGl~~~~vTSL~~-lg~~~~~~~v~~~l~~~f 220 (222)
|=+.-+ ......|+.+|+++++. ...|||.+ ++.+++.+++...+.++|
T Consensus 115 ILiE~~-~~~~iiGiGiNvn~~~~------------~~atsl~~~~~~~~~~~~l~~~l~~~l 164 (188)
T d2zgwa2 115 VLVEGK-GDKIVLGIGLNVNNKVP------------NGATSMKLELGSEVPLLSVFRSLITNL 164 (188)
T ss_dssp EEEEES-SSCEEEEEEECSSSCCC------------TTCCCHHHHHSSCCCHHHHHHHHHHHH
T ss_pred EEEecc-cceEEEEEEeecCCCCC------------CCcccHHHHhCCCCCHHHHHHHHHHHH
Confidence 999988 77889999999987642 25799976 899999999888887765
No 8
>d1biaa3 d.104.1.2 (A:64-270) Biotin repressor/biotin holoenzyme synthetase, catalytic (central) domain {Escherichia coli [TaxId: 562]}
Probab=98.14 E-value=1.3e-05 Score=65.00 Aligned_cols=124 Identities=15% Similarity=0.200 Sum_probs=74.7
Q ss_pred CcCCCceeeCCCC-eEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhc-CCcceecCCCCcEEEecCCCCCCeEe
Q psy2898 80 DRGGEVTYHGPGQ-AIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQY-NINCKRKKNAPGVYIANGPFSGAKIA 157 (222)
Q Consensus 80 ~RGG~iTyHgPGQ-Lv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~-gi~a~~~~~~~GVwv~~~~~~~~KIa 157 (222)
-|.|..++--||. |.+..++..+.. ......+--...-++.++|+.+ +.+...+- +++|++ +++|||
T Consensus 54 GR~gr~W~S~~G~~l~~S~~~~~~~~-----~~~~~~l~~~~~lav~~~l~~~~~~~~~iKW-PNDIl~-----~~kKi~ 122 (207)
T d1biaa3 54 GRRGRKWFSPFGANLYLSMFWRLEQG-----PAAAIGLSLVIGIVMAEVLRKLGADKVRVKW-PNDLYL-----QDRKLA 122 (207)
T ss_dssp --------CCTTSEEEEEEEEEECC------CCCTHHHHHHHHHHHHHHHHHTTCTTCEEET-TTEEEE-----TTEEEE
T ss_pred CcCCCccccccccccccccccccccC-----chhhhhhhhHHHHHHHHHHhhcccceeeeee-chhhhc-----CCCccc
Confidence 5778888888986 777777655543 1222222222334888999997 55566666 899999 999999
Q ss_pred ecceeEee----CcEEEeceeeeecCCCCcCCcccCCCCCCCceeecccCCCCCCHHHHHHHHhccc
Q psy2898 158 SIGLKISA----KGYVYHGVSINVSMDLEPFNNINPCGYPGLVIVDMKKLGINTTISKVQHLFIKNF 220 (222)
Q Consensus 158 siGv~i~~----~~vt~HG~alNv~~dL~~f~~I~pCGl~~~~vTSL~~lg~~~~~~~v~~~l~~~f 220 (222)
+|=+.... .....=|+.+|++..-.+ -.+.+...+++.+.+.+++.+++...+.++|
T Consensus 123 GIL~E~~~~~~~~~~vviGiGiNv~~~~~~------~~~~~~~~s~l~~~~~~i~~~~l~~~ll~~l 183 (207)
T d1biaa3 123 GILVELTGKTGDAAQIVIGAGINMAMRRVE------ESVVNQGWITLQEAGINLDRNTLAAMLIREL 183 (207)
T ss_dssp EEEEEEEC----CEEEEEEEEEECCC-----------------CCCTTTTTCCCCHHHHHHHHHHHH
T ss_pred cceEEEEeccCCcceeeeecccccccCCCc------cccccchhHHHHHhCCCCCHHHHHHHHHHHH
Confidence 99776441 123568999999864222 2334455677888999999999988888766
No 9
>d2ddza1 d.104.1.4 (A:3-190) Uncharacterized protein PH0223 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=92.32 E-value=0.17 Score=39.69 Aligned_cols=85 Identities=20% Similarity=0.311 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHhhcCCcceecCCCCcEEEecCCCCCCeEeecceeEeeCcEEEec-eeeeecCCCCcCCcccCCCCCC
Q psy2898 116 LVENIEEAVILTMSQYNINCKRKKNAPGVYIANGPFSGAKIASIGLKISAKGYVYHG-VSINVSMDLEPFNNINPCGYPG 194 (222)
Q Consensus 116 ~v~~Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~~~~~~KIasiGv~i~~~~vt~HG-~alNv~~dL~~f~~I~pCGl~~ 194 (222)
+-|.|-..+.+.|.++|++..+. -.++|+ +++| .|+-++.. .-++.-+ +++||...=. |- +
T Consensus 85 ~QRLl~~~~~evL~~~g~~~~r~--GDDLyv-----~~~K-lSVSIA~~-s~~s~~iH~GINV~~~g~------p~---~ 146 (188)
T d2ddza1 85 LQKLLIARLVELLWNYGIEASRR--GDDIYV-----NGRK-LSISIATV-SPVSIKIHIGLNVKTVGV------PP---G 146 (188)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEE--TTEEEE-----TTEE-CEEEEEEE-CSSCEEEEEEEESCCSSC------CS---S
T ss_pred HHHHHHHHHHHHHHHcCCceEec--CCeEEE-----cCCE-EEEEEEee-cCCceEEEEEEEEeccCc------CC---C
Confidence 34457778888999999987764 379999 7777 46667777 4444444 8899998522 22 2
Q ss_pred CceeecccCCCCCCHHHHHHHHhccc
Q psy2898 195 LVIVDMKKLGINTTISKVQHLFIKNF 220 (222)
Q Consensus 195 ~~vTSL~~lg~~~~~~~v~~~l~~~f 220 (222)
....||.++|. +.+++.+.++..|
T Consensus 147 v~a~~L~d~g~--d~~~fm~~v~~~y 170 (188)
T d2ddza1 147 VDAIGLEELGI--DPTEFMERSAKAL 170 (188)
T ss_dssp SCBCCHHHHTC--CHHHHHHHHHHHH
T ss_pred cceechhhcCC--CHHHHHHHHHHHH
Confidence 46788888876 5556666555544
No 10
>d1b24a2 d.95.2.1 (A:100-179) DNA endonuclease I-dmoI {Archaeon Desulfurococcus mobilis [TaxId: 2274]}
Probab=56.03 E-value=5.8 Score=25.86 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhhcCCcc--eecCCCCcEEE
Q psy2898 119 NIEEAVILTMSQYNINC--KRKKNAPGVYI 146 (222)
Q Consensus 119 ~Le~~vi~~L~~~gi~a--~~~~~~~GVwv 146 (222)
+|-+.|-+-|.+|||+. +.++.+-||||
T Consensus 34 rLLelV~~WL~e~GiestihLDDkRHGVYV 63 (80)
T d1b24a2 34 ALLEIVSRWLNNLGVRNTIHLDDHRHGVYV 63 (80)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEETTTTEEE
T ss_pred HHHHHHHHHHHHhCcceeEEeccccccEEE
Confidence 45567889999999996 44666899999
No 11
>d2ok5a4 g.18.1.1 (A:9-76) Complement factor B {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.56 E-value=16 Score=23.49 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=15.5
Q ss_pred CcCCCceeeCCCCeEEEEe
Q psy2898 80 DRGGEVTYHGPGQAIIYLL 98 (222)
Q Consensus 80 ~RGG~iTyHgPGQLv~YpI 98 (222)
..||.+|+-.+|+++.|--
T Consensus 11 I~GG~~tl~~~GSvL~Y~C 29 (68)
T d2ok5a4 11 IKGGSFRLLQEGQALEYVC 29 (68)
T ss_dssp CBTCEEEEEGGGTEEEEEC
T ss_pred EeCCEEEEcCCCeEEEEEC
Confidence 4799999999999888753
Done!