RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2898
(222 letters)
>d1w66a1 d.104.1.3 (A:1-216) Lipoyltransferase LipB {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 216
Score = 115 bits (289), Expect = 1e-32
Identities = 59/217 (27%), Positives = 96/217 (44%), Gaps = 14/217 (6%)
Query: 5 SISSTYSNLQIIQRGLEPYIVSFNAMLLFNSNRTNYTIDQLWFVEHFPVYTLGLKSNFSH 64
SI S S + + Q G Y ++ R D L +EH VYT G ++
Sbjct: 4 SIRSKLSAIDVRQLGTVDYRTAWQLQRELADARVAGGADTLLLLEHPAVYTAGRRTETHE 63
Query: 65 ILISKKLNNIPIIRTDRGGEVTYHGPGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAV 124
I + P++ TDRGG++T+HGPGQ + Y +I L + V +EE++
Sbjct: 64 RPI----DGTPVVDTDRGGKITWHGPGQLVGYPIIGLAEPL------DVVNYVRRLEESL 113
Query: 125 ILTMSQYNINCKRKKNAPGVYIANGPFSGAKIASIGLKISAKGYVYHGVSINVSMDLEPF 184
I + ++ R GV++ P K+A+IG+++S + HG ++N DL F
Sbjct: 114 IQVCADLGLHAGRVDGRSGVWLPGRPAR--KVAAIGVRVS-RATTLHGFALNCDCDLAAF 170
Query: 185 NNINPCGYPGLVIVDMKK-LGINTTISKVQHLFIKNF 220
I PCG + + LG T+ +V+
Sbjct: 171 TAIVPCGISDAAVTSLSAELGRTVTVDEVRATVAAAV 207
>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma
acidophilum [TaxId: 2303]}
Length = 256
Score = 72.8 bits (178), Expect = 4e-16
Identities = 28/192 (14%), Positives = 59/192 (30%), Gaps = 23/192 (11%)
Query: 45 LWFVEHFPVYTLGLKSNFSHILISKKL--NNIPIIRTDRGGEVTYHGPGQAIIYLLIDLR 102
L F H +G + + N I + R GG YH G ++
Sbjct: 36 LRFYRHDRSVIIGYFQVAEEEVDLDYMKKNGIMLARRYTGGGAVYHDLGDLNFSVVRSSD 95
Query: 103 RRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANG----PFSGAKIAS 158
I + + EAV+ ++ ++ + + N KI
Sbjct: 96 DM-------DITSMFRTMNEAVVNSLRILGLDARPGELNDVSIPVNKKTDIMAGEKKIMG 148
Query: 159 IGLKISAKGYVYHGVSINVSMDLEPFN---NINPCGYPGLVIVDMK------KLGINTTI 209
+ KG ++ V DL+ + + + + + ++ +I
Sbjct: 149 AAGAMR-KGAKLWHAAMLVHTDLDMLSAVLKVPDEKFRDKIAKSTRERVANVTDFVDVSI 207
Query: 210 SKVQHLFIKNFF 221
+V++ I+ F
Sbjct: 208 DEVRNALIRGFS 219
>d1x2ga2 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 246
Score = 70.6 bits (172), Expect = 2e-15
Identities = 30/227 (13%), Positives = 71/227 (31%), Gaps = 35/227 (15%)
Query: 11 SNLQIIQ-RGLEPYIVSFN-AM--LLFNSNRTNYTIDQLWFVEHFPVYTLGLKSNFSHIL 66
S L+++ +P+ FN A+ +F + L+ + +G N
Sbjct: 1 STLRLLISDSYDPW---FNLAVEECIFRQMPATQRV--LFLWRNADTVVIGRAQNPWKEC 55
Query: 67 ISKKL--NNIPIIRTDRGGEVTYHGPGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAV 124
++++ +N+ + R GG +H G + V
Sbjct: 56 NTRRMEEDNVRLARRSSGGGAVFHDLGNTCFTFMAGKPEYD-----------KTISTSIV 104
Query: 125 ILTMSQYNINCKRKKNAPGVYIANGPFSGAKIASIGLKISAKGYVYHGVSINVSMDLEPF 184
+ ++ ++ + V K++ + + K +H ++ ++ DL
Sbjct: 105 LNALNALGVSAEASGRNDLVV--KTVEGDRKVSGSAYRET-KDRGFHHGTLLLNADLSRL 161
Query: 185 NNINPCGYPGL----------VIVDMKKLGINTTISKVQHLFIKNFF 221
N L + ++ +L T +V + FF
Sbjct: 162 ANYLNPDKKKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITEAFF 208
>d1vqza2 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-terminal
domain {Streptococcus pneumoniae [TaxId: 1313]}
Length = 241
Score = 70.2 bits (171), Expect = 3e-15
Identities = 25/190 (13%), Positives = 52/190 (27%), Gaps = 28/190 (14%)
Query: 45 LWFVEHFPVYTLGLKSNFSHILISKKL--NNIPIIRTDRGGEVTYHGPGQAIIYLLIDLR 102
+ P +G N + + N I ++R GG YH ++
Sbjct: 32 FLLWINKPSIIVGRHQNTIEEINRDYVRENGIEVVRRISGGGAVYHDLNNLNYTIISKED 91
Query: 103 RRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANGPFSGAKIASIGLK 162
++ VI T++Q + + I G K
Sbjct: 92 E--------NKAFDFKSFSTPVINTLAQLGVKA-EFTGRNDLEID-----GKKFCGNAQA 137
Query: 163 ISAKGYVYHGVSINVSMDLEPFN---NINPCGYPGLVIVDMKK--------LGINTTISK 211
G + H + +DL ++ + + ++ L T+ K
Sbjct: 138 YI-NGRIMHHGCLLFDVDLSVLANALKVSKDKFESKGVKSVRARVTNIINELPKKITVEK 196
Query: 212 VQHLFIKNFF 221
+ L ++
Sbjct: 197 FRDLLLEYMK 206
>d2p5ia1 d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacillus
halodurans [TaxId: 86665]}
Length = 265
Score = 63.6 bits (154), Expect = 7e-13
Identities = 28/234 (11%), Positives = 54/234 (23%), Gaps = 34/234 (14%)
Query: 15 IIQRGLEPYIVSFNAM----LLFNSNRTNYTIDQLWFVEHFPVYTLGLKSN-FSHILISK 69
+ P + + L S + + L H LG++ + I
Sbjct: 5 LDHTSFGPTFQALQSFAYDDTLCTSIGKSQSPPTLRAWVHHNTVVLGIQDSRLPQIKAGI 64
Query: 70 KL---NNIPIIRTDRGGEVTYHGPGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVIL 126
+ +I + GG G + L+ + I E + E +
Sbjct: 65 EALKGFQHDVIVRNSGGLAVVLDSGILNLSLV------LKEEKGFSIDDGYELMYELICS 118
Query: 127 TMSQYNINCKRKKNAPGVYIANGP--FSGAKIASIGLKISAKGYVYHGVSINVSMDLEP- 183
+ + ++ + G K A I + G + VS
Sbjct: 119 MFQDHREQIEAREIVGSYCPGSYDLSIDGKKFAGISQRRIRGGVAVQI-YLCVSGSGAER 177
Query: 184 ---FNNINPCGYPGLVIVDMKK-------------LGINTTISKVQHLFIKNFF 221
G + LG +S V +
Sbjct: 178 AKMIRTFYDKAVAGQPTKFVYPRIKPETMASLSELLGQPHNVSDVLLKALMTLQ 231
>d2p0la1 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Streptococcus
agalactiae [TaxId: 1311]}
Length = 269
Score = 58.1 bits (140), Expect = 6e-11
Identities = 25/199 (12%), Positives = 49/199 (24%), Gaps = 28/199 (14%)
Query: 45 LWFVEHFPVYTLGLK-SNFSHILISKKL---NNIPIIRTDRGGEVTYHGPGQAIIYLLID 100
L LG+ H+ ++KK + + GG G L+I
Sbjct: 46 LHIWPMTKTVILGMLDRELPHLELAKKEIISRGYEPVVRNFGGLAVVADEGILNFSLVIP 105
Query: 101 LRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANG--PFSGAKIAS 158
+I +V+ I S + + + +G K A
Sbjct: 106 DVFERKLSISDGYLIMVDFIRSI----FSDFYQPIEHFEVETSYCPGKFDLSINGKKFAG 161
Query: 159 IGLKISAKGYVYHGVSINVSMDLEP----FNNINPCGYPGLVIVDMKK------------ 202
+ + G ++V D + ++ G
Sbjct: 162 LAQRRIKNGIAVSI-YLSVCGDQKGRSQMISDFYKIGLGDTGSPIAYPNVDPEIMANLSD 220
Query: 203 -LGINTTISKVQHLFIKNF 220
L T+ V + +
Sbjct: 221 LLDCPMTVEDVIDRMLISL 239
>d1urja_ e.58.1.1 (A:) Infected cell protein 8, ICP8 {Herpes simplex
virus 1 [TaxId: 10298]}
Length = 1122
Score = 27.5 bits (61), Expect = 1.8
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 14 QIIQRGLEPYIVSFNAMLLFNSNRTNYTIDQ 44
+ L+PY +L R+N + Q
Sbjct: 644 HAMSLTLDPYACGPCPLLQLLGRRSNLAVYQ 674
>d1qwta_ b.26.1.3 (A:) Interferon regulatory factor 3 (IRF3),
transactivation domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 239
Score = 25.6 bits (56), Expect = 4.5
Identities = 3/26 (11%), Positives = 12/26 (46%)
Query: 112 YIKKLVENIEEAVILTMSQYNINCKR 137
Y++ ++ + + L + + +R
Sbjct: 72 YVRHVLSCLGGGLALWRAGQWLWAQR 97
>d3cpta1 d.110.7.1 (A:3-118) MEK binding partner 1, MP1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 116
Score = 24.7 bits (54), Expect = 5.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 5 SISSTYSNLQIIQRGLEPYIVSFNA 29
SI Y+ Q++Q P +VSF A
Sbjct: 68 SIICYYNTYQVVQFNRLPLVVSFIA 92
>d1j6ya_ d.26.1.1 (A:) Mitotic rotamase PIN1, domain 2 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 120
Score = 24.4 bits (52), Expect = 7.6
Identities = 10/46 (21%), Positives = 17/46 (36%)
Query: 63 SHILISKKLNNIPIIRTDRGGEVTYHGPGQAIIYLLIDLRRRYSDN 108
SHILI + + D G++ +A + L +R
Sbjct: 11 SHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSG 56
>d1vkwa_ d.90.1.2 (A:) Putative nitroreductase TM1586 {Thermotoga
maritima [TaxId: 2336]}
Length = 217
Score = 24.8 bits (54), Expect = 8.2
Identities = 17/116 (14%), Positives = 39/116 (33%), Gaps = 12/116 (10%)
Query: 103 RRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANGPFS-------GAK 155
R + + + +++ ++IE ++ +++ + P A G +
Sbjct: 25 RDFLE--RKMPERVKDDIENLLVKFITKKLDWKINLSSFPSYIYAKAEKHFDELVEYGFQ 82
Query: 156 IASIGLKISAKGYVYHGVSINVSMDLEPFNNINPCGYPGLVIVDMKKLGINTTISK 211
I L ++A+G+ G I GYP K+ I + +
Sbjct: 83 GEQIVLFLTAQGF---GTCWMARSPHPDVPYIIVFGYPRTRNFTRKRRPITSFLEN 135
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.141 0.411
Gapped
Lambda K H
0.267 0.0676 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 834,217
Number of extensions: 39691
Number of successful extensions: 125
Number of sequences better than 10.0: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 17
Length of query: 222
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 140
Effective length of database: 1,281,736
Effective search space: 179443040
Effective search space used: 179443040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.5 bits)