Query psy2899
Match_columns 139
No_of_seqs 133 out of 1234
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 20:25:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2899.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2899hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00539 atpC F0F1 ATP synthas 100.0 1.8E-41 3.9E-46 244.9 16.8 127 1-129 4-130 (133)
2 CHL00063 atpE ATP synthase CF1 100.0 4.8E-41 1E-45 242.9 16.8 131 1-134 3-133 (134)
3 PRK13450 atpC F0F1 ATP synthas 100.0 1.1E-40 2.4E-45 240.5 16.4 128 1-131 4-131 (132)
4 PRK14735 atpC F0F1 ATP synthas 100.0 1.6E-40 3.4E-45 241.5 17.3 130 1-133 3-132 (139)
5 PRK00571 atpC F0F1 ATP synthas 100.0 2.9E-40 6.3E-45 238.9 16.6 130 1-132 4-133 (135)
6 PRK13452 atpC F0F1 ATP synthas 100.0 3.1E-40 6.8E-45 241.4 16.9 130 1-133 6-136 (145)
7 PRK13446 atpC F0F1 ATP synthas 100.0 3.7E-40 8E-45 238.8 16.8 130 1-133 5-134 (136)
8 TIGR01216 ATP_synt_epsi ATP sy 100.0 3.1E-40 6.7E-45 237.5 16.2 128 1-130 2-129 (130)
9 COG0355 AtpC F0F1-type ATP syn 100.0 1E-39 2.3E-44 235.9 16.6 130 1-131 4-133 (135)
10 PRK13444 atpC F0F1 ATP synthas 100.0 4.5E-38 9.8E-43 225.5 16.4 121 1-131 6-126 (127)
11 PRK13448 atpC F0F1 ATP synthas 100.0 2.5E-37 5.4E-42 223.8 16.8 123 1-134 4-126 (135)
12 PRK14736 atpC F0F1 ATP synthas 100.0 7.9E-37 1.7E-41 220.6 15.8 116 1-118 4-119 (133)
13 PRK13443 atpC F0F1 ATP synthas 100.0 5.6E-36 1.2E-40 216.7 15.1 107 1-110 5-111 (136)
14 PRK13451 atpC F0F1 ATP synthas 100.0 1.2E-35 2.6E-40 205.4 12.7 100 1-103 1-100 (101)
15 PRK01474 atpC F0F1 ATP synthas 100.0 2.1E-35 4.6E-40 207.6 13.6 105 1-106 5-110 (112)
16 KOG1758|consensus 100.0 2.3E-33 4.9E-38 203.0 14.8 129 1-130 29-158 (159)
17 PRK06228 F0F1 ATP synthase sub 100.0 3.6E-32 7.7E-37 195.8 14.7 101 1-105 3-104 (131)
18 TIGR03166 alt_F1F0_F1_eps alte 100.0 1.6E-31 3.6E-36 190.3 14.5 97 2-102 1-98 (122)
19 PRK13447 F0F1 ATP synthase sub 100.0 3.7E-31 8E-36 191.6 14.6 93 1-94 1-94 (136)
20 PRK13442 atpC F0F1 ATP synthas 100.0 3.2E-30 7E-35 174.5 10.7 83 1-85 6-88 (89)
21 PRK13449 atpC F0F1 ATP synthas 100.0 5.5E-30 1.2E-34 173.1 11.3 84 1-85 4-87 (88)
22 PF02823 ATP-synt_DE_N: ATP sy 100.0 2E-29 4.2E-34 167.2 11.4 80 1-82 1-80 (80)
23 PF00401 ATP-synt_DE: ATP synt 98.9 5.3E-09 1.2E-13 62.9 5.0 47 86-132 1-47 (48)
24 PRK10579 hypothetical protein; 89.0 5 0.00011 27.4 7.9 61 11-73 6-76 (94)
25 PF06865 DUF1255: Protein of u 77.3 20 0.00043 24.4 7.2 61 11-73 6-76 (94)
26 PF13779 DUF4175: Domain of un 56.1 21 0.00045 33.2 4.7 48 80-127 457-508 (820)
27 TIGR02302 aProt_lowcomp conser 53.2 25 0.00054 32.8 4.7 48 80-127 488-539 (851)
28 PRK09859 multidrug efflux syst 52.5 1.3E+02 0.0029 24.8 10.7 101 29-132 42-158 (385)
29 PF10732 DUF2524: Protein of u 51.7 70 0.0015 21.3 5.7 43 90-132 11-58 (84)
30 COG1579 Zn-ribbon protein, pos 48.6 48 0.001 26.3 5.1 46 87-132 65-110 (239)
31 PF06890 Phage_Mu_Gp45: Bacter 46.1 44 0.00095 24.9 4.4 39 41-80 73-111 (162)
32 PF14257 DUF4349: Domain of un 40.0 1.3E+02 0.0029 23.4 6.6 41 92-132 143-183 (262)
33 PF06347 SH3_4: Bacterial SH3 39.8 77 0.0017 18.4 4.1 29 36-66 14-43 (55)
34 PRK06342 transcription elongat 39.7 73 0.0016 23.5 4.7 44 90-133 36-79 (160)
35 PF14014 DUF4230: Protein of u 38.7 1.4E+02 0.003 21.1 7.4 54 74-127 89-143 (157)
36 PF09650 PHA_gran_rgn: Putativ 38.1 47 0.001 21.9 3.2 33 10-43 32-64 (87)
37 PF04420 CHD5: CHD5-like prote 37.8 1.6E+02 0.0035 21.5 6.9 45 90-134 42-89 (161)
38 COG3123 Uncharacterized protei 37.2 1.3E+02 0.0028 20.2 7.6 63 9-73 4-76 (94)
39 COG1795 Formaldehyde-activatin 36.3 17 0.00037 27.1 0.8 15 34-48 43-57 (170)
40 PRK12438 hypothetical protein; 32.6 1.1E+02 0.0023 29.3 5.5 39 91-130 951-989 (991)
41 TIGR03142 cytochro_ccmI cytoch 32.0 1.1E+02 0.0024 21.0 4.4 39 87-125 35-74 (117)
42 COG0251 TdcF Putative translat 31.3 1.2E+02 0.0025 21.4 4.5 53 57-110 18-70 (130)
43 PRK15030 multidrug efflux syst 30.0 1.9E+02 0.0042 23.9 6.3 20 56-75 74-93 (397)
44 COG1667 Uncharacterized protei 29.8 91 0.002 24.9 4.0 44 27-75 11-56 (254)
45 COG4575 ElaB Uncharacterized c 29.4 2E+02 0.0043 20.0 5.4 40 91-130 15-60 (104)
46 smart00658 RPOL8c RNA polymera 29.2 98 0.0021 22.6 3.8 44 1-46 9-52 (143)
47 TIGR02610 PHA_gran_rgn putativ 28.6 1E+02 0.0022 20.6 3.6 28 11-39 36-63 (91)
48 PRK03598 putative efflux pump 28.5 3.1E+02 0.0067 21.9 9.4 84 45-131 41-127 (331)
49 CHL00173 cpeA phycoerythrin al 28.3 72 0.0016 23.8 3.1 30 108-137 19-48 (164)
50 PF01797 Y1_Tnp: Transposase I 28.2 34 0.00074 23.0 1.2 17 30-46 45-61 (121)
51 CHL00088 apcB allophycocyanin 27.7 1.1E+02 0.0023 22.7 3.9 42 95-137 7-48 (161)
52 TIGR03784 marine_sortase sorta 27.4 91 0.002 23.3 3.5 53 23-78 86-143 (174)
53 PHA02106 hypothetical protein 27.3 58 0.0013 21.4 2.1 20 17-36 31-50 (91)
54 TIGR00999 8a0102 Membrane Fusi 26.8 2.7E+02 0.0059 21.1 6.2 25 108-132 51-75 (265)
55 PF08988 DUF1895: Protein of u 26.8 1.7E+02 0.0038 18.5 6.8 44 93-136 23-66 (68)
56 PLN02372 violaxanthin de-epoxi 26.6 4.3E+02 0.0093 23.0 7.6 36 2-39 243-278 (455)
57 PF10805 DUF2730: Protein of u 26.1 2.2E+02 0.0047 19.4 5.8 39 93-131 47-85 (106)
58 PF14346 DUF4398: Domain of un 25.9 1.5E+02 0.0033 19.6 4.2 16 90-105 42-57 (103)
59 PF09631 Sen15: Sen15 protein; 25.7 98 0.0021 20.7 3.2 23 47-70 76-98 (101)
60 COG3566 Uncharacterized protei 25.6 41 0.00088 28.1 1.4 26 29-54 149-175 (379)
61 PF07253 Gypsy: Gypsy protein; 24.5 2.1E+02 0.0046 25.0 5.6 50 29-79 302-356 (472)
62 PF11197 DUF2835: Protein of u 24.4 2E+02 0.0042 18.3 4.1 42 12-54 15-59 (68)
63 COG0216 PrfA Protein chain rel 24.1 3.2E+02 0.0069 23.1 6.3 43 90-132 55-97 (363)
64 PRK09578 periplasmic multidrug 23.9 3.8E+02 0.0082 22.0 6.9 20 56-75 72-91 (385)
65 PF05120 GvpG: Gas vesicle pro 23.8 2.2E+02 0.0047 18.6 6.4 43 88-133 28-71 (79)
66 COG4913 Uncharacterized protei 23.5 2.2E+02 0.0048 26.8 5.7 49 84-132 663-712 (1104)
67 CHL00089 apcF allophycocyanin 23.4 1.4E+02 0.003 22.4 3.8 30 108-137 19-48 (169)
68 PRK00068 hypothetical protein; 23.2 1.7E+02 0.0036 28.0 5.0 39 90-129 930-968 (970)
69 TIGR01730 RND_mfp RND family e 23.2 3.6E+02 0.0078 20.9 9.3 21 109-129 100-120 (322)
70 PF13600 DUF4140: N-terminal d 23.2 2.3E+02 0.005 18.7 5.5 11 42-52 34-44 (104)
71 PF04371 PAD_porph: Porphyromo 23.1 1.6E+02 0.0035 24.1 4.5 44 58-101 132-179 (329)
72 PF03870 RNA_pol_Rpb8: RNA pol 23.0 64 0.0014 23.4 1.9 44 1-46 4-47 (138)
73 PF10819 DUF2564: Protein of u 22.8 2.3E+02 0.0051 18.6 5.5 44 89-132 4-50 (79)
74 PF10234 Cluap1: Clusterin-ass 22.2 1.7E+02 0.0036 23.7 4.3 21 113-133 199-219 (267)
75 PF10153 DUF2361: Uncharacteri 22.2 2.8E+02 0.0061 19.4 5.0 43 90-132 61-103 (114)
76 COG1943 Transposase and inacti 22.1 53 0.0012 23.4 1.3 18 29-46 52-69 (136)
77 TIGR01337 apcB allophycocyanin 21.8 1.6E+02 0.0035 21.9 3.9 43 94-137 5-47 (167)
78 PRK09973 putative outer membra 21.4 1.8E+02 0.0039 19.4 3.6 39 93-133 36-74 (85)
79 PF13351 DUF4099: Protein of u 21.1 1.9E+02 0.0041 18.9 3.7 33 2-35 40-72 (85)
80 COG1566 EmrA Multidrug resista 20.8 2E+02 0.0044 24.0 4.7 20 88-107 84-103 (352)
81 COG0215 CysS Cysteinyl-tRNA sy 20.4 2.1E+02 0.0045 25.0 4.8 42 32-79 232-273 (464)
82 PF11471 Sugarporin_N: Maltopo 20.1 2.3E+02 0.0049 17.5 4.4 14 93-106 30-43 (60)
83 PRK10476 multidrug resistance 20.1 3.5E+02 0.0076 21.8 5.9 44 89-132 129-173 (346)
No 1
>PRK00539 atpC F0F1 ATP synthase subunit epsilon; Validated
Probab=100.00 E-value=1.8e-41 Score=244.86 Aligned_cols=127 Identities=17% Similarity=0.241 Sum_probs=121.8
Q ss_pred CEEEEEecCeeeeecCceeEEEEecCceeeeecCCCcceeeeecCeEEEEEECCCCeEEEEEEeccEEEEECCEEEEEcc
Q psy2899 1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPDSVIVLAD 80 (139)
Q Consensus 1 ~~l~IvtP~~~~f~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~i~i~~~~~~~~~~~~v~gG~~~v~~~~v~Ila~ 80 (139)
|+|+|+||++.+|++ +|++|++||.+|+|||||||+|+|+.|.||+++|+..+ |.++.|+|+|||++|.+|.|+|+++
T Consensus 4 ~~l~IvTP~~~~~~~-~v~~V~l~t~~G~~gIL~~Haplit~L~~G~~~i~~~~-~~~~~~~v~gGf~ev~~n~v~Ilad 81 (133)
T PRK00539 4 LRFLVLSPSGIKLDE-KIISAQVKTTEGYAGLNRNRAPLIAAIQSHVCKITFAD-KTKRSAIIGAGLLLIKKTEAKIFTE 81 (133)
T ss_pred cEEEEEcCCCeEEec-eEEEEEEecCccCceecCCCcceEeEecceEEEEEECC-CcEEEEEEeeeEEEEECCEEEEEEC
Confidence 689999999999999 99999999999999999999999999999999998756 7888899999999999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHH
Q psy2899 81 TAIHGSDLVEKQIEKEKILLENILYNKKSNIDYSITKAKLAIIIAQLKT 129 (139)
Q Consensus 81 ~a~~~~~iD~~~a~~~~~~a~~~l~~~~~~~~~~~a~~~l~ra~~rl~~ 129 (139)
.|+++++||.++|++++++|+++|++..++.++.+|+..|+||.+||+-
T Consensus 82 ~ae~~eeID~~~a~~a~erAe~~L~~~~~~~~~~~a~~~L~ra~~Rl~~ 130 (133)
T PRK00539 82 NFVFADELDYDETLKRKKELERKIKHTKDTKLNIKIEQNLMFELLKLSE 130 (133)
T ss_pred eEEchhhCCHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999877888999999999999999874
No 2
>CHL00063 atpE ATP synthase CF1 epsilon subunit
Probab=100.00 E-value=4.8e-41 Score=242.93 Aligned_cols=131 Identities=21% Similarity=0.390 Sum_probs=125.2
Q ss_pred CEEEEEecCeeeeecCceeEEEEecCceeeeecCCCcceeeeecCeEEEEEECCCCeEEEEEEeccEEEEECCEEEEEcc
Q psy2899 1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPDSVIVLAD 80 (139)
Q Consensus 1 ~~l~IvtP~~~~f~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~i~i~~~~~~~~~~~~v~gG~~~v~~~~v~Ila~ 80 (139)
|+|+|+||++++|++ +|++|++||.+|+|||||||+|+++.|.||+++|+. + |.+.+|+|+|||++|.+|+|+|+++
T Consensus 3 l~l~IvtP~~~~~~~-~v~~V~~p~~~G~~gIL~~H~p~it~L~~G~l~i~~-~-~~~~~~~v~gG~~~v~~~~v~Il~~ 79 (134)
T CHL00063 3 LNLRVLTPNRIVWDS-EVEEIILPTNSGQIGVLPNHAPIATALDIGVLRIRL-N-DQWLTMALMGGFARIGNNEITILVN 79 (134)
T ss_pred EEEEEEcCCceEEee-eEEEEEEEcCccCceecCCCcceEeEecceEEEEEE-C-CeEEEEEEcceEEEEECCEEEEEEC
Confidence 689999999999999 999999999999999999999999999999999986 5 7889999999999999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy2899 81 TAIHGSDLVEKQIEKEKILLENILYNKKSNIDYSITKAKLAIIIAQLKTIQYLR 134 (139)
Q Consensus 81 ~a~~~~~iD~~~a~~~~~~a~~~l~~~~~~~~~~~a~~~l~ra~~rl~~~~~~~ 134 (139)
.|+++++||.+++++++++|+++|++..++.++.+++.+|+||.+||+++++++
T Consensus 80 ~a~~~~dID~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~ra~arl~~~~~~~ 133 (134)
T CHL00063 80 DAEKGSDIDPQEAQQTLEIAEANLEKAEGKKQKIEANLALKRARARVEAINAIS 133 (134)
T ss_pred eeEchhhCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999988888999999999999999999977654
No 3
>PRK13450 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=100.00 E-value=1.1e-40 Score=240.47 Aligned_cols=128 Identities=28% Similarity=0.430 Sum_probs=122.5
Q ss_pred CEEEEEecCeeeeecCceeEEEEecCceeeeecCCCcceeeeecCeEEEEEECCCCeEEEEEEeccEEEEECCEEEEEcc
Q psy2899 1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPDSVIVLAD 80 (139)
Q Consensus 1 ~~l~IvtP~~~~f~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~i~i~~~~~~~~~~~~v~gG~~~v~~~~v~Ila~ 80 (139)
|+|+|+||++++|++ +|++|++||.+|+|||||||+|+++.|+||+++|+..+ |.+.+|+|+|||+++.+|+|+|+++
T Consensus 4 l~l~IvtP~~~~~~~-~v~~V~~p~~~G~~GILp~H~p~it~L~~G~l~i~~~~-~~~~~~~v~gGf~~v~~~~v~Il~~ 81 (132)
T PRK13450 4 IKLTILTPEKNFYIG-EVKEVITEGLDGDIAILPNHVPLITYLKPTITKIIDEN-GEKKKIFTSSGVLKVENNEVYILCD 81 (132)
T ss_pred EEEEEEcCCceEEec-eEEEEEEECCccCceecCCCcccEeEEccEEEEEEECC-CcEEEEEEcCeEEEEECCEEEEEeh
Confidence 689999999999999 99999999999999999999999999999999998766 8889999999999999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH
Q psy2899 81 TAIHGSDLVEKQIEKEKILLENILYNKKSNIDYSITKAKLAIIIAQLKTIQ 131 (139)
Q Consensus 81 ~a~~~~~iD~~~a~~~~~~a~~~l~~~~~~~~~~~a~~~l~ra~~rl~~~~ 131 (139)
.|+++++||.+++++++++|++.| +..++.++.+++.+|+||.+||++++
T Consensus 82 ~a~~~~~ID~~~a~~~~~~A~~~l-~~~~~~~~~~a~~~l~ra~~rl~~~~ 131 (132)
T PRK13450 82 ASEWPEEIDIKRAENAKKRAEERL-RKKDEIDVKRAELALFRAIARIKLKE 131 (132)
T ss_pred hhcccccCCHHHHHHHHHHHHHHH-hcCChhHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999 56678899999999999999999864
No 4
>PRK14735 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=100.00 E-value=1.6e-40 Score=241.54 Aligned_cols=130 Identities=28% Similarity=0.497 Sum_probs=124.4
Q ss_pred CEEEEEecCeeeeecCceeEEEEecCceeeeecCCCcceeeeecCeEEEEEECCCCeEEEEEEeccEEEEECCEEEEEcc
Q psy2899 1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPDSVIVLAD 80 (139)
Q Consensus 1 ~~l~IvtP~~~~f~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~i~i~~~~~~~~~~~~v~gG~~~v~~~~v~Ila~ 80 (139)
|+|+|+||++.+|++ +|++|++||.+|+|||||||+|+++.|.||+++|+. + |.+..|+|+|||++|.+|.|+|+++
T Consensus 3 l~l~IvtP~~~~~~~-~v~~V~~p~~~G~~gILp~H~P~it~L~~G~v~i~~-~-g~~~~~~v~gGf~ev~~~~v~Ila~ 79 (139)
T PRK14735 3 IHLEIVTAERVVLSD-DVDMISAPTKDGRVGILPRHAPLLTILEPGELDIVK-N-GVRTPFAISGGFMEVLPHRVTILAD 79 (139)
T ss_pred EEEEEECCCccEEee-eEEEEEEecCccCeeEcCCCcceEEEecceEEEEEE-C-CeEEEEEEcccEEEEeCCEEEEEee
Confidence 689999999999999 999999999999999999999999999999999986 5 7889999999999999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy2899 81 TAIHGSDLVEKQIEKEKILLENILYNKKSNIDYSITKAKLAIIIAQLKTIQYL 133 (139)
Q Consensus 81 ~a~~~~~iD~~~a~~~~~~a~~~l~~~~~~~~~~~a~~~l~ra~~rl~~~~~~ 133 (139)
.|+++++||.+++++++++|+++|++..++.++.+++..|.||.+||++.+..
T Consensus 80 ~a~~~edID~~~a~~a~e~Ae~~l~~~~~~~~~~~a~~~L~ra~arl~~~~~~ 132 (139)
T PRK14735 80 TAERADEIDEARAEQARAEAEQRRRERQSEQDLALAEAKLRRAMVRLRVAQLH 132 (139)
T ss_pred eEEEcccCCHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999998888889999999999999999998743
No 5
>PRK00571 atpC F0F1 ATP synthase subunit epsilon; Validated
Probab=100.00 E-value=2.9e-40 Score=238.92 Aligned_cols=130 Identities=45% Similarity=0.719 Sum_probs=124.7
Q ss_pred CEEEEEecCeeeeecCceeEEEEecCceeeeecCCCcceeeeecCeEEEEEECCCCeEEEEEEeccEEEEECCEEEEEcc
Q psy2899 1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPDSVIVLAD 80 (139)
Q Consensus 1 ~~l~IvtP~~~~f~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~i~i~~~~~~~~~~~~v~gG~~~v~~~~v~Ila~ 80 (139)
|+|+|+||++.+|++ +|++|++||.+|+|||||||+|+++.|.||+++|+.++ |.+++|+|+|||+++.+|.|+|+++
T Consensus 4 l~l~ivtP~~~~~~~-~v~~v~~~~~~G~~gILp~H~p~it~L~~G~l~i~~~~-~~~~~~~v~gG~~~v~~n~v~Ila~ 81 (135)
T PRK00571 4 LTVDIVSPEGLIYSG-EVEEVVVPGTEGELGILPGHAPLLTALKPGVVRIKKDD-GEEEVIAVSGGFLEVQPDKVTVLAD 81 (135)
T ss_pred EEEEEEcCCCcEEee-eEEEEEEEcCccCeeecCCCcceEEEeeceEEEEEECC-CcEEEEEEccEEEEEECCEEEEEEe
Confidence 689999999999999 99999999999999999999999999999999999866 7888999999999999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHH
Q psy2899 81 TAIHGSDLVEKQIEKEKILLENILYNKKSNIDYSITKAKLAIIIAQLKTIQY 132 (139)
Q Consensus 81 ~a~~~~~iD~~~a~~~~~~a~~~l~~~~~~~~~~~a~~~l~ra~~rl~~~~~ 132 (139)
.|+++++||.+++++++++|+++|++..++.++.+++.+|++|++|++++.+
T Consensus 82 ~a~~~~~id~~~a~~~~~~ae~~l~~~~~~~~~~~a~~~l~~a~~rl~~~~~ 133 (135)
T PRK00571 82 SAERADDIDEARAEEAKERAEEALENKHDDVDYARAQAALARAIARLRVAEK 133 (135)
T ss_pred eEEEhhhCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999888889999999999999999998754
No 6
>PRK13452 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=100.00 E-value=3.1e-40 Score=241.44 Aligned_cols=130 Identities=24% Similarity=0.487 Sum_probs=122.4
Q ss_pred CEEEEEecCeeeeecCceeEEEEecCceeeeecCCCcceeeeecCeEEEEEECCCCeEEEEEEeccEEEEECCEEEEEcc
Q psy2899 1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPDSVIVLAD 80 (139)
Q Consensus 1 ~~l~IvtP~~~~f~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~i~i~~~~~~~~~~~~v~gG~~~v~~~~v~Ila~ 80 (139)
|+|+|+||++.+|++ +|++|++||.+|+|||||||+|+++.|.||+++|+. + |.+..|+|+|||++|.+|.|+|+++
T Consensus 6 l~l~IvtP~~~~~~g-~v~~V~lp~~~G~~GILp~H~plit~L~~G~l~i~~-~-~~~~~~~v~gGf~eV~~n~v~Ilad 82 (145)
T PRK13452 6 LKVDVVSPLGSVFKG-EADMVSLRGSAGEMGIAYGHTELLSTLPAGVVNVRK-D-QHTDVLYVSGGIVEVTPTRVTIMVD 82 (145)
T ss_pred EEEEEEcCCceEEec-eeEEEEEEcCccCeEecCCCcceEeeecceEEEEEE-C-CcEEEEEEcceEEEEECCEEEEEeC
Confidence 689999999999999 999999999999999999999999999999999986 5 6788899999999999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHhc-CCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy2899 81 TAIHGSDLVEKQIEKEKILLENILYN-KKSNIDYSITKAKLAIIIAQLKTIQYL 133 (139)
Q Consensus 81 ~a~~~~~iD~~~a~~~~~~a~~~l~~-~~~~~~~~~a~~~l~ra~~rl~~~~~~ 133 (139)
.|+++++||.++|++++++|+++|++ ..++.++.+|+.+|+||.+||+++++.
T Consensus 83 ~ae~~~eID~~~ae~a~~~Ae~~L~~~~~~~~~~~~a~~~L~rA~~Rl~~~~~~ 136 (145)
T PRK13452 83 DMERAENLNQAEAEKARARAKEVLKNPDASKLDIEAANKRLKEADARLKALNSS 136 (145)
T ss_pred eeeccccCCHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999987 446778889999999999999997654
No 7
>PRK13446 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=100.00 E-value=3.7e-40 Score=238.79 Aligned_cols=130 Identities=25% Similarity=0.368 Sum_probs=124.5
Q ss_pred CEEEEEecCeeeeecCceeEEEEecCceeeeecCCCcceeeeecCeEEEEEECCCCeEEEEEEeccEEEEECCEEEEEcc
Q psy2899 1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPDSVIVLAD 80 (139)
Q Consensus 1 ~~l~IvtP~~~~f~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~i~i~~~~~~~~~~~~v~gG~~~v~~~~v~Ila~ 80 (139)
|+|+|+||++.+|++ +|++|++||.+|+|||||||+|+|+.|.||+++|+. + |.+.+|+|+|||++|.+|+|+|+++
T Consensus 5 l~l~IvTP~~~~~~~-~v~~V~lpt~~G~~gILp~H~p~it~L~~G~l~i~~-~-~~~~~~~v~gG~~~v~~~~v~Il~~ 81 (136)
T PRK13446 5 LKLEIVTPEKKVLSE-EVDEVGAPGVLGEFGVLPGHAPFLTALKIGELTYKK-G-GKTHYVAVNGGFAEVSNNKVTVLAE 81 (136)
T ss_pred cEEEEEcCCceEEee-eEEEEEEEcCccCeEEcCCCcceEEEeeccEEEEEe-C-CcEEEEEEcCEEEEEECCEEEEEee
Confidence 789999999999999 999999999999999999999999999999999985 5 7888999999999999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy2899 81 TAIHGSDLVEKQIEKEKILLENILYNKKSNIDYSITKAKLAIIIAQLKTIQYL 133 (139)
Q Consensus 81 ~a~~~~~iD~~~a~~~~~~a~~~l~~~~~~~~~~~a~~~l~ra~~rl~~~~~~ 133 (139)
.|++.++||.+++++++++|+++|++..++.++.+++.+|++|.+||++.++.
T Consensus 82 ~a~~~~~iD~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~a~~rl~~~~~~ 134 (136)
T PRK13446 82 TAERAEEIDVERARAALERAEQRLKKLTPEDDSARAEAALERALIRLQVAGKA 134 (136)
T ss_pred eEEEhhhCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999998888889999999999999999998754
No 8
>TIGR01216 ATP_synt_epsi ATP synthase, F1 epsilon subunit (delta in mitochondria). This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation.
Probab=100.00 E-value=3.1e-40 Score=237.47 Aligned_cols=128 Identities=38% Similarity=0.616 Sum_probs=123.9
Q ss_pred CEEEEEecCeeeeecCceeEEEEecCceeeeecCCCcceeeeecCeEEEEEECCCCeEEEEEEeccEEEEECCEEEEEcc
Q psy2899 1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPDSVIVLAD 80 (139)
Q Consensus 1 ~~l~IvtP~~~~f~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~i~i~~~~~~~~~~~~v~gG~~~v~~~~v~Ila~ 80 (139)
|+|+|+||++++|++ +|++|++||.+|+|||||||+|+++.|.||+++|+..+ |.+++|+|+|||+++.+|.|+|+++
T Consensus 2 ~~l~IvtP~~~~~~~-~v~~v~~~t~~G~~giL~~H~p~i~~L~~G~v~i~~~~-~~~~~~~v~gG~~~v~~~~v~Il~~ 79 (130)
T TIGR01216 2 LKLEIVTPEGEIYSG-EVESVILPGSEGELGILPGHAPLITALKPGVVRIRKLG-DDWEHIAVSGGFAEVQPDKVTILAD 79 (130)
T ss_pred EEEEEEcCCceEEee-eEEEEEEECCcCCeeecCCChhhEeEecceEEEEEECC-CCEEEEEEcCcEEEEECCEEEEEEe
Confidence 689999999999999 99999999999999999999999999999999999766 7889999999999999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHH
Q psy2899 81 TAIHGSDLVEKQIEKEKILLENILYNKKSNIDYSITKAKLAIIIAQLKTI 130 (139)
Q Consensus 81 ~a~~~~~iD~~~a~~~~~~a~~~l~~~~~~~~~~~a~~~l~ra~~rl~~~ 130 (139)
+|++.++||.+++++.+++|+++|++..++.++.+++.+|++|.+||+++
T Consensus 80 ~a~~~~~id~~~a~~~~~~ae~~l~~~~~~~~~~~a~~~l~~a~~rl~~~ 129 (130)
T TIGR01216 80 GAVFADDIDEAEAEKALEAAEKLLESAEDDKDLAEALLKLKKARAQLEAL 129 (130)
T ss_pred EEEEcccCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999888899999999999999999975
No 9
>COG0355 AtpC F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) [Energy production and conversion]
Probab=100.00 E-value=1e-39 Score=235.93 Aligned_cols=130 Identities=38% Similarity=0.649 Sum_probs=123.6
Q ss_pred CEEEEEecCeeeeecCceeEEEEecCceeeeecCCCcceeeeecCeEEEEEECCCCeEEEEEEeccEEEEECCEEEEEcc
Q psy2899 1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPDSVIVLAD 80 (139)
Q Consensus 1 ~~l~IvtP~~~~f~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~i~i~~~~~~~~~~~~v~gG~~~v~~~~v~Ila~ 80 (139)
|+|+|+||++.+|++ +|++|++||.+|+|||||||+|+|+.|+||+++|+..+++++.+|+|+|||++|.++.|+|+|+
T Consensus 4 l~l~IVsP~~~i~~g-~v~~V~~~t~eGe~GILp~H~Plit~Lk~g~v~i~~~~~~~~~~i~VsgGfleV~~~~vtIlad 82 (135)
T COG0355 4 LKLEIVSPEGIIYSG-EVKSVVVPTTEGELGILPGHAPLITALKPGVVRIKTEDGDKEEKIAVSGGFLEVQPNEVTILAD 82 (135)
T ss_pred eEEEEEcCCceEEee-EEEEEEEecCCeeeecCCCCccceeeecCcEEEEEEcCCCceEEEEEeccEEEEeCCEEEEEEc
Confidence 689999999999999 9999999999999999999999999999999999987623557999999999999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH
Q psy2899 81 TAIHGSDLVEKQIEKEKILLENILYNKKSNIDYSITKAKLAIIIAQLKTIQ 131 (139)
Q Consensus 81 ~a~~~~~iD~~~a~~~~~~a~~~l~~~~~~~~~~~a~~~l~ra~~rl~~~~ 131 (139)
.|++.++||.+++++++++|++.+++..++.++.+|+.+|.++.+||++..
T Consensus 83 ~A~~~~did~~~a~~~~~~ae~~l~~~~~~~~~~~a~~~l~~al~~L~~~~ 133 (135)
T COG0355 83 SAERADDIDEARAEEAKERAEKELESAKDDKDYRRAEAALARALARLRVAE 133 (135)
T ss_pred eeEecccCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhc
Confidence 999999999999999999999999998888899999999999999999875
No 10
>PRK13444 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=100.00 E-value=4.5e-38 Score=225.54 Aligned_cols=121 Identities=21% Similarity=0.395 Sum_probs=113.2
Q ss_pred CEEEEEecCeeeeecCceeEEEEecCceeeeecCCCcceeeeecCeEEEEEECCCCeEEEEEEeccEEEEECCEEEEEcc
Q psy2899 1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPDSVIVLAD 80 (139)
Q Consensus 1 ~~l~IvtP~~~~f~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~i~i~~~~~~~~~~~~v~gG~~~v~~~~v~Ila~ 80 (139)
|+|+|+||++++|++ +|++|++||.+|+|||||||+|+++.|.||+++|+. + |.+..|+|+|||++|.+|+|+|+++
T Consensus 6 ~~l~IvtP~~~~~~~-~v~~V~~p~~~G~~gILp~H~p~it~L~~G~l~i~~-~-~~~~~~~v~gG~~~v~~~~v~Il~~ 82 (127)
T PRK13444 6 LTVSVISPEKILYKG-EVDSLIVPGSEGFFGILPNHAPLVATLGIGLLEIRK-G-EKLKRISVEGGFCEVKDNQISILTD 82 (127)
T ss_pred eEEEEEcCCceEEec-eEEEEEEECCccCeEecCCCcCeEeEeccEEEEEEE-C-CeEEEEEEeceEEEEECCEEEEEEe
Confidence 689999999999999 999999999999999999999999999999999986 5 7888999999999999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH
Q psy2899 81 TAIHGSDLVEKQIEKEKILLENILYNKKSNIDYSITKAKLAIIIAQLKTIQ 131 (139)
Q Consensus 81 ~a~~~~~iD~~~a~~~~~~a~~~l~~~~~~~~~~~a~~~l~ra~~rl~~~~ 131 (139)
.|+++++||.+++++++++|+++|.+ .++ +..|+||.+||++..
T Consensus 83 ~a~~~~diD~~~a~~~~~~Ae~~l~~-~~~------~~~l~ra~~rl~~~~ 126 (127)
T PRK13444 83 HGALKEDIDHEHEKKLLAEAEKLPPS-DSK------NLLLQKTKTRILVAS 126 (127)
T ss_pred EEEehhhCCHHHHHHHHHHHHHHHhC-Cch------HHHHHHHHHHHHhhc
Confidence 99999999999999999999999986 322 667999999998753
No 11
>PRK13448 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=100.00 E-value=2.5e-37 Score=223.75 Aligned_cols=123 Identities=29% Similarity=0.472 Sum_probs=113.5
Q ss_pred CEEEEEecCeeeeecCceeEEEEecCceeeeecCCCcceeeeecCeEEEEEECCCCeEEEEEEeccEEEEECCEEEEEcc
Q psy2899 1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPDSVIVLAD 80 (139)
Q Consensus 1 ~~l~IvtP~~~~f~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~i~i~~~~~~~~~~~~v~gG~~~v~~~~v~Ila~ 80 (139)
|+|+|+||++++|++ +|++|++||.+|+|||||||+|+++.|.||+++|+. + |.+..|+|+|||++|.+|+|+|+++
T Consensus 4 ~~l~IvtPe~~~~~~-~v~~V~~p~~~G~~gILp~H~p~it~L~pG~v~i~~-~-~~~~~~~v~gGf~eV~~~~v~Ila~ 80 (135)
T PRK13448 4 FHFDLVSPEKLAFSG-EVDQVDIPGVEGDFGVLAGHAPVVAVIRPGILTVTA-G-GNQQKIVVLGGLAEVSEKGLTVLAD 80 (135)
T ss_pred eEEEEEcCCccEEee-eEEEEEEEcCccCeEEcCCCcceEeEeccEEEEEEE-C-CcEEEEEEeccEEEEECCEEEEEEe
Confidence 689999999999999 999999999999999999999999999999999986 4 6677899999999999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy2899 81 TAIHGSDLVEKQIEKEKILLENILYNKKSNIDYSITKAKLAIIIAQLKTIQYLR 134 (139)
Q Consensus 81 ~a~~~~~iD~~~a~~~~~~a~~~l~~~~~~~~~~~a~~~l~ra~~rl~~~~~~~ 134 (139)
.|++.++||.+++++++++|+++|++..+ ..|+||.+||++++.+.
T Consensus 81 ~a~~~~dID~~~a~~~~~~Ae~~l~~~~~--------~~l~ra~~rl~~~~~~~ 126 (135)
T PRK13448 81 VATSVADLDLAQFAATIAEMEAQLAGKVG--------DELDRAIERLDHFKSIQ 126 (135)
T ss_pred eeEEcccCCHHHHHHHHHHHHHHHhhCCh--------HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987432 36888899988887764
No 12
>PRK14736 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=100.00 E-value=7.9e-37 Score=220.60 Aligned_cols=116 Identities=31% Similarity=0.453 Sum_probs=107.2
Q ss_pred CEEEEEecCeeeeecCceeEEEEecCceeeeecCCCcceeeeecCeEEEEEECCCCeEEEEEEeccEEEEECCEEEEEcc
Q psy2899 1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPDSVIVLAD 80 (139)
Q Consensus 1 ~~l~IvtP~~~~f~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~i~i~~~~~~~~~~~~v~gG~~~v~~~~v~Ila~ 80 (139)
|+|+|+||++.+|++ +|++|++||.+|+|||||||+|+++.|+||+++|+..+ |++..|+|+|||++|.+|+|+|+++
T Consensus 4 ~~l~IvTP~~~~~~~-~v~~V~vp~~~G~~gILp~H~P~it~L~~G~l~i~~~~-~~~~~~~v~gGf~eV~~n~v~Ila~ 81 (133)
T PRK14736 4 FHFDLVGPERTLYSG-EVEAVQLPGSEGEMTVLPGHAPVLTTLKVGVITVTETT-GNGKRIYVRGGFAEIGPTSVTVLAE 81 (133)
T ss_pred eEEEEEcCCccEEee-eeEEEEEecCccCeeEcCCChhhEeEecceEEEEEECC-CcEEEEEEeceEEEEECCEEEEEee
Confidence 689999999999999 99999999999999999999999999999999998766 8889999999999999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHhcCCCchhHHHHHH
Q psy2899 81 TAIHGSDLVEKQIEKEKILLENILYNKKSNIDYSITKA 118 (139)
Q Consensus 81 ~a~~~~~iD~~~a~~~~~~a~~~l~~~~~~~~~~~a~~ 118 (139)
.|+++++||.+++++++++|++.+..+.++.....++.
T Consensus 82 ~ae~~eeID~~~a~~a~~~Ae~~~~~~~~~~~~~~~~~ 119 (133)
T PRK14736 82 RAAPVEELTPEMIDREIEAVEMERDATQDLDKREALNA 119 (133)
T ss_pred eeEEhhhCCHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 99999999999999999999999987666654444443
No 13
>PRK13443 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=100.00 E-value=5.6e-36 Score=216.73 Aligned_cols=107 Identities=26% Similarity=0.354 Sum_probs=100.5
Q ss_pred CEEEEEecCeeeeecCceeEEEEecCceeeeecCCCcceeeeecCeEEEEEECCCCeEEEEEEeccEEEEECCEEEEEcc
Q psy2899 1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPDSVIVLAD 80 (139)
Q Consensus 1 ~~l~IvtP~~~~f~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~i~i~~~~~~~~~~~~v~gG~~~v~~~~v~Ila~ 80 (139)
|+|+|+||++.+|++ +|++|++||.+|+|||||||+|+++.|+||+++|+.++ +. ..|+|+|||++|++|+|+|+++
T Consensus 5 l~l~IVTP~~~~~~g-ev~~V~lpt~~Ge~GILp~H~Plit~L~pG~v~i~~~~-~~-~~~avsgGf~eV~~n~V~Ilad 81 (136)
T PRK13443 5 LQFDLVSPERRLASF-QATAVQIPGADGDMTAMEGHAPTITTLRPGILRAHGPS-GT-QEYAVTGGFAEINATSISVLAE 81 (136)
T ss_pred eEEEEEcCCceEEec-eEEEEEEecCccCeeEcCCCcceEEEecceEEEEEECC-Ce-EEEEEcceEEEEECCEEEEEeC
Confidence 689999999999999 99999999999999999999999999999999998755 54 4599999999999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHhcCCCc
Q psy2899 81 TAIHGSDLVEKQIEKEKILLENILYNKKSN 110 (139)
Q Consensus 81 ~a~~~~~iD~~~a~~~~~~a~~~l~~~~~~ 110 (139)
.|+++++||.+++++++++|+++|+++.++
T Consensus 82 ~a~~~edID~~~a~~a~~~Ae~~l~~~~~~ 111 (136)
T PRK13443 82 KAIPVEELTGAVLDEFIAEARELASVALPE 111 (136)
T ss_pred eeEEhhhCCHHHHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999999999986533
No 14
>PRK13451 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=100.00 E-value=1.2e-35 Score=205.40 Aligned_cols=100 Identities=19% Similarity=0.382 Sum_probs=96.0
Q ss_pred CEEEEEecCeeeeecCceeEEEEecCceeeeecCCCcceeeeecCeEEEEEECCCCeEEEEEEeccEEEEECCEEEEEcc
Q psy2899 1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPDSVIVLAD 80 (139)
Q Consensus 1 ~~l~IvtP~~~~f~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~i~i~~~~~~~~~~~~v~gG~~~v~~~~v~Ila~ 80 (139)
|+|+|+||++.+|++ +|++|++||.+|+|||||||+|+++.|+||+++|+. + +.++.|+|+|||+++.+|.|+|+++
T Consensus 1 m~l~IvtP~~~~~~~-~v~~V~~pt~~G~~GILp~H~p~it~L~~G~l~i~~-~-~~~~~~~v~gGf~~v~~~~v~Il~~ 77 (101)
T PRK13451 1 MKVKIVTPYGIVYDR-ESDFVSFRTVEGEMGILPRRAPIIAKLSVCDVKIKS-G-DDEYEYKVADGFLHCDGKNVIIITE 77 (101)
T ss_pred CEEEEEcCCceEEec-eeEEEEEEcCccCeEEcCCCcceEEEecceEEEEEE-C-CcEEEEEEeccEEEEECCEEEEEEe
Confidence 799999999999999 999999999999999999999999999999999986 4 6678899999999999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHH
Q psy2899 81 TAIHGSDLVEKQIEKEKILLENI 103 (139)
Q Consensus 81 ~a~~~~~iD~~~a~~~~~~a~~~ 103 (139)
+|+++++||.++|++++++|++.
T Consensus 78 ~a~~~e~ID~~~a~~a~~~Ae~~ 100 (101)
T PRK13451 78 EAGREEEISPHRYLGARERVERV 100 (101)
T ss_pred EeEehhhCCHHHHHHHHHHhhcc
Confidence 99999999999999999999864
No 15
>PRK01474 atpC F0F1 ATP synthase subunit epsilon; Validated
Probab=100.00 E-value=2.1e-35 Score=207.60 Aligned_cols=105 Identities=26% Similarity=0.548 Sum_probs=99.0
Q ss_pred CEEEEEecCeeeeecCceeEEEEecCceeeeecCCCcceeeeecCeEEEEEECC-CCeEEEEEEeccEEEEECCEEEEEc
Q psy2899 1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISK-KIEEKCIFVSGGIIDIQPDSVIVLA 79 (139)
Q Consensus 1 ~~l~IvtP~~~~f~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~i~i~~~~-~~~~~~~~v~gG~~~v~~~~v~Ila 79 (139)
|+|+|+||++++|++ +|++|++||.+|+|||||||+|+++.|.||+++|+..+ +|.+.+|+|+|||+++.+|+|+|++
T Consensus 5 ~~l~IvTP~~~~~~~-~v~~V~lp~~~G~~gILp~H~p~it~L~~G~l~i~~~~~~~~~~~~~v~gGf~~v~~n~v~Ila 83 (112)
T PRK01474 5 ILVKIITPLSIAFEK-QAKMVTMPGEEGMFGVLPSHVPMIVSLKAGLVQVYIDDMHKSENTYLISGGVTEVTGNYINIAT 83 (112)
T ss_pred EEEEEEcCCceEEee-eEEEEEEEcCccCceecCCCcceEEEecceEEEEEECCCCCcEEEEEEcceEEEEECCEEEEEe
Confidence 689999999999999 99999999999999999999999999999999997632 1577889999999999999999999
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHhc
Q psy2899 80 DTAIHGSDLVEKQIEKEKILLENILYN 106 (139)
Q Consensus 80 ~~a~~~~~iD~~~a~~~~~~a~~~l~~ 106 (139)
+.|+++++||.+++++++++|+++|+.
T Consensus 84 ~~a~~~~~ID~~~a~~~~~~A~~~l~~ 110 (112)
T PRK01474 84 ETAINVTNLSEAEIATKLLDLQKTLSD 110 (112)
T ss_pred CeeEEhhhCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999998874
No 16
>KOG1758|consensus
Probab=100.00 E-value=2.3e-33 Score=203.00 Aligned_cols=129 Identities=17% Similarity=0.308 Sum_probs=123.1
Q ss_pred CEEEEEecCeeeeecCceeEEEEecCceeeeecCCCcceeeeecCeEEEEEECCCCeEEEEEEeccEEEEE-CCEEEEEc
Q psy2899 1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQ-PDSVIVLA 79 (139)
Q Consensus 1 ~~l~IvtP~~~~f~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~i~i~~~~~~~~~~~~v~gG~~~v~-~~~v~Ila 79 (139)
|+|.+.+|+..+|++.+|++|.+||.+|+||||+||.|+++.|+||++.++.++ |...+|||||||+.++ ++.++|++
T Consensus 29 L~l~fa~P~~t~~~~a~V~qVdvPt~sG~~GVLanHVPti~~LkPGvvsV~~~~-~~~~k~FvSsGfa~v~~ds~~~ila 107 (159)
T KOG1758|consen 29 LKLTFALPNTTVYDGAEVTQVDVPTLSGQIGVLANHVPTIQVLKPGVVSVHEGS-GTKSKYFVSSGFATVNADSSLQILA 107 (159)
T ss_pred eEEEEecCceEEecCceeEEEeccccCcceeeecccCcchheeccceEEEEeCC-CcEEEEEEecceEEEcCCCeEEEEe
Confidence 689999999999999999999999999999999999999999999999999977 7766999999999999 55999999
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHH
Q psy2899 80 DTAIHGSDLVEKQIEKEKILLENILYNKKSNIDYSITKAKLAIIIAQLKTI 130 (139)
Q Consensus 80 ~~a~~~~~iD~~~a~~~~~~a~~~l~~~~~~~~~~~a~~~l~ra~~rl~~~ 130 (139)
++|+..++||...|++.++.++.++.++.++.+.++|+.+++++.++.+++
T Consensus 108 ~EA~~ledid~~~a~q~Le~aqa~l~~a~de~~~AEA~I~vev~ealv~Al 158 (159)
T KOG1758|consen 108 EEAVKLEDIDPSEAQQLLEKAQAKLVSASDEREAAEAQIRVEVAEALVKAL 158 (159)
T ss_pred hhccccccCCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999998876
No 17
>PRK06228 F0F1 ATP synthase subunit epsilon; Validated
Probab=100.00 E-value=3.6e-32 Score=195.85 Aligned_cols=101 Identities=21% Similarity=0.259 Sum_probs=90.8
Q ss_pred CEEEEEecCeeeeecCc-eeEEEEecCceeeeecCCCcceeeeecCeEEEEEECCCCeEEEEEEeccEEEEECCEEEEEc
Q psy2899 1 MRIDIVSIEGLLFSNKN-IEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPDSVIVLA 79 (139)
Q Consensus 1 ~~l~IvtP~~~~f~~~~-v~~V~~~t~~G~~gIL~~H~p~it~L~~G~i~i~~~~~~~~~~~~v~gG~~~v~~~~v~Ila 79 (139)
|+|+|+||++++|++ + |++|++||.+|+|||||||+|++|.|.||+++|+..+ |++.+|+|+|||+++.+|+|+|++
T Consensus 3 ~~l~IvTP~~~~~~g-~~v~~V~lpt~~G~~GILp~H~p~it~L~~G~l~i~~~~-~~~~~~av~gGf~ev~~n~V~Ila 80 (131)
T PRK06228 3 MNLKILLPFEVFAEK-KGVTRIVAETREGSFGLLPHRLDCVAALVPGILVYETEA-EGEVYVAVDEGILVKTGPDVLVSV 80 (131)
T ss_pred eEEEEEcCCeeEECC-CcEEEEEEEcCccCeEECCCCcceEeeecceEEEEEECC-CcEEEEEEcceEEEEECCEEEEEE
Confidence 689999999999999 8 9999999999999999999999999999999998756 788999999999999999999999
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHh
Q psy2899 80 DTAIHGSDLVEKQIEKEKILLENILY 105 (139)
Q Consensus 80 ~~a~~~~~iD~~~a~~~~~~a~~~l~ 105 (139)
+.|+++++| ++..+.++++.+.+.
T Consensus 81 d~ae~~edi--d~~~~~l~~~~~~~~ 104 (131)
T PRK06228 81 RNAIGGTDL--GELREAVEQEFLTLD 104 (131)
T ss_pred ceeEchhhH--HHHHHHHHHHHHhhh
Confidence 999999986 455566666644433
No 18
>TIGR03166 alt_F1F0_F1_eps alternate F1F0 ATPase, F1 subunit epsilon. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 epsilon subunit of this apparent second ATP synthase.
Probab=99.98 E-value=1.6e-31 Score=190.34 Aligned_cols=97 Identities=22% Similarity=0.296 Sum_probs=87.9
Q ss_pred EEEEEecCeeeee-cCceeEEEEecCceeeeecCCCcceeeeecCeEEEEEECCCCeEEEEEEeccEEEEECCEEEEEcc
Q psy2899 2 RIDIVSIEGLLFS-NKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPDSVIVLAD 80 (139)
Q Consensus 2 ~l~IvtP~~~~f~-~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~i~i~~~~~~~~~~~~v~gG~~~v~~~~v~Ila~ 80 (139)
+|+|+||++++|+ + +|++|++||.+|+|||||||+|++|.|.||+++|+..+ |.+++++|+|||+++.+|+|+|+++
T Consensus 1 ~l~IvtP~~~~~~~~-~v~~v~~~~~~G~~GILp~H~p~it~L~~G~l~i~~~~-~~~~~~av~gGf~~v~~n~v~Il~~ 78 (122)
T TIGR03166 1 RLKILTPFRVFLDKL-PVTRIVAETESGSFGLLPGHVDCVAALVPGILIYETAD-GGEHYVAVDQGILVKRGADVEVSVR 78 (122)
T ss_pred CeEEECCCeeEEecC-cEEEEEEEcCcCCeEEcCCCcCeEeEeccEEEEEEECC-CcEEEEEEeeeEEEEECCEEEEEec
Confidence 5899999999999 8 99999999999999999999999999999999998766 7889999999999999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHH
Q psy2899 81 TAIHGSDLVEKQIEKEKILLEN 102 (139)
Q Consensus 81 ~a~~~~~iD~~~a~~~~~~a~~ 102 (139)
.|+++++|| ++.++++.+..
T Consensus 79 ~ae~~edId--~l~~~i~~~~~ 98 (122)
T TIGR03166 79 NAVGGTELE--ELEEAVRQEFL 98 (122)
T ss_pred eeEcccCHH--HHHHHHHHHHH
Confidence 999999984 44445555544
No 19
>PRK13447 F0F1 ATP synthase subunit epsilon; Provisional
Probab=99.97 E-value=3.7e-31 Score=191.60 Aligned_cols=93 Identities=18% Similarity=0.347 Sum_probs=86.4
Q ss_pred CEEEEEecCeeeeecCceeEEEEecCceeeeecCCCcceeeeecCeEEEEEECCCCeEEEEEEeccEEEEE-CCEEEEEc
Q psy2899 1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQ-PDSVIVLA 79 (139)
Q Consensus 1 ~~l~IvtP~~~~f~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~i~i~~~~~~~~~~~~v~gG~~~v~-~~~v~Ila 79 (139)
|+|+|+||++++|++.+|.+|.+||.+|+|||||||+|++|.|.||+++|+..+ |.+++++|+|||++|. +|+|+|++
T Consensus 1 ~~L~IVTP~~~~~~g~~v~~V~~~t~~G~~GILp~HaPlit~L~~G~l~i~~~~-g~~~~~aVsGGfleV~~~n~V~Ila 79 (136)
T PRK13447 1 LRLTIATPLAVVVDELDIVSLRAEDASGGFGILPGHADFLTVLRASVVRWRRAD-GATHYCAVRGGVLRVTGGARVEIAC 79 (136)
T ss_pred CEEEEEcCCeeEECCCcEEEEEecCCcCceEEcCCCcceEeEecceEEEEEECC-CcEEEEEEeCcEEEEecCCEEEEEe
Confidence 789999999999998349999999999999999999999999999999998766 8889999999999999 89999999
Q ss_pred cccccCCCCCHHHHH
Q psy2899 80 DTAIHGSDLVEKQIE 94 (139)
Q Consensus 80 ~~a~~~~~iD~~~a~ 94 (139)
+.|+++++||..++.
T Consensus 80 d~ae~~edID~~~a~ 94 (136)
T PRK13447 80 REAVLGEDLARLEAV 94 (136)
T ss_pred ceeEchhhcCHHHHH
Confidence 999999999955443
No 20
>PRK13442 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=99.97 E-value=3.2e-30 Score=174.54 Aligned_cols=83 Identities=25% Similarity=0.458 Sum_probs=79.7
Q ss_pred CEEEEEecCeeeeecCceeEEEEecCceeeeecCCCcceeeeecCeEEEEEECCCCeEEEEEEeccEEEEECCEEEEEcc
Q psy2899 1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPDSVIVLAD 80 (139)
Q Consensus 1 ~~l~IvtP~~~~f~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~i~i~~~~~~~~~~~~v~gG~~~v~~~~v~Ila~ 80 (139)
|+|+|+||++.+|++ +|++|++||.+|+|||||||+|+++.|.||+++|+..+ +++.+|+|+|||+++.+|+|+|+++
T Consensus 6 ~~l~IvtP~~~~~~~-~v~~V~~p~~~G~~gILp~H~p~it~L~~G~l~i~~~~-~~~~~~~v~gG~~~v~~n~v~Il~~ 83 (89)
T PRK13442 6 LHVNIVAADRPVWSG-EATMVVARTTEGDIGILPGHEPLLGVLESGTVTVVTPG-GERISAAVDGGFISFDSNKLTVLAE 83 (89)
T ss_pred EEEEEEcCCccEEec-eeEEEEEECCcCCcEecCCCcCeEEEEcceEEEEEECC-CcEEEEEEccEEEEEECCEEEEEEe
Confidence 689999999999999 99999999999999999999999999999999999766 8889999999999999999999999
Q ss_pred ccccC
Q psy2899 81 TAIHG 85 (139)
Q Consensus 81 ~a~~~ 85 (139)
+|++.
T Consensus 84 ~ae~~ 88 (89)
T PRK13442 84 RAELV 88 (89)
T ss_pred EEEEC
Confidence 99875
No 21
>PRK13449 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=99.97 E-value=5.5e-30 Score=173.10 Aligned_cols=84 Identities=27% Similarity=0.580 Sum_probs=78.3
Q ss_pred CEEEEEecCeeeeecCceeEEEEecCceeeeecCCCcceeeeecCeEEEEEECCCCeEEEEEEeccEEEEECCEEEEEcc
Q psy2899 1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPDSVIVLAD 80 (139)
Q Consensus 1 ~~l~IvtP~~~~f~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~i~i~~~~~~~~~~~~v~gG~~~v~~~~v~Ila~ 80 (139)
|+|+|+||++.+|++ +|++|++||.+|+|||||||+|+++.|+||+++++..+++++++|+|+|||+++.+|+|+|+++
T Consensus 4 l~l~IvtP~~~~~~~-~v~~V~~p~~~G~~gILp~H~p~it~L~~G~l~i~~~~~~~~~~~~v~gGf~~v~~n~v~Il~~ 82 (88)
T PRK13449 4 LHFELVTPERLLRSG-EVDMVVVPGTEGDFGVLAGHAPFMTTLREGEVTVYSSDGAAPEVFHVQGGFAEVNEKGLTILAE 82 (88)
T ss_pred eEEEEEcCCceEEcc-EEEEEEEeCCccCeEEcCCCcceEEEeeceEEEEEECCCCeEEEEEEcceEEEEECCEEEEEcc
Confidence 689999999999999 9999999999999999999999999999999999874425578899999999999999999999
Q ss_pred ccccC
Q psy2899 81 TAIHG 85 (139)
Q Consensus 81 ~a~~~ 85 (139)
.|+.+
T Consensus 83 ~ae~~ 87 (88)
T PRK13449 83 HAVEA 87 (88)
T ss_pred eeEEc
Confidence 99864
No 22
>PF02823 ATP-synt_DE_N: ATP synthase, Delta/Epsilon chain, beta-sandwich domain; InterPro: IPR020546 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta (in mitochondrial ATPase) or epsilon (in bacteria or chloroplast ATPase). The interaction site of subunit C of the F0 complex with the delta or epsilon subunit of the F1 complex may be important for connecting the rotor of F1 (gamma subunit) to the rotor of F0 (C subunit) []. In bacterial species, the delta subunit is the equivalent of the Oligomycin sensitive subunit (OSCP, IPR000711 from INTERPRO) in metazoans. The C-terminal domain of the epsilon subunit appears to act as an inhibitor of ATPase activity []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0045261 proton-transporting ATP synthase complex, catalytic core F(1); PDB: 2WSS_H 1E79_H 2JDI_H 2W6I_H 2W6H_H 2W6J_H 2CK3_H 2V7Q_H 1H8E_H 2XND_H ....
Probab=99.96 E-value=2e-29 Score=167.23 Aligned_cols=80 Identities=41% Similarity=0.772 Sum_probs=76.8
Q ss_pred CEEEEEecCeeeeecCceeEEEEecCceeeeecCCCcceeeeecCeEEEEEECCCCeEEEEEEeccEEEEECCEEEEEcc
Q psy2899 1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPDSVIVLAD 80 (139)
Q Consensus 1 ~~l~IvtP~~~~f~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~i~i~~~~~~~~~~~~v~gG~~~v~~~~v~Ila~ 80 (139)
|+|+|+||++.+|++ +|++|++||.+|+|||||||+|+++.|.||+++|+..+ |++++|+|+|||+++.+|+|+|+++
T Consensus 1 l~l~IvtP~~~~~~~-~v~~v~~~t~~G~~gIl~~H~p~i~~l~~G~~~i~~~~-~~~~~~~v~~G~~~v~~n~v~Il~~ 78 (80)
T PF02823_consen 1 LKLKIVTPDGIFFEG-EVESVVLPTTDGEFGILPNHAPFITALKPGELRIKDAD-GEEKKFAVSGGFLEVKDNEVTILAD 78 (80)
T ss_dssp EEEEEEESSSEEEEE-EESEEEEEBSSSEEEEETTS-SEEEEEESEEEEEEESS-SEEEEEEESSEEEEEETSEEEEEES
T ss_pred CEEEEEcCCceEEee-EEEEEEEECCCcChhhccCCchhheeccceEEEEEEcC-CCEEEEEEcCEEEEEECCEEEEEEc
Confidence 689999999999999 99999999999999999999999999999999999877 9999999999999999999999999
Q ss_pred cc
Q psy2899 81 TA 82 (139)
Q Consensus 81 ~a 82 (139)
+|
T Consensus 79 ~A 80 (80)
T PF02823_consen 79 EA 80 (80)
T ss_dssp SE
T ss_pred cC
Confidence 76
No 23
>PF00401 ATP-synt_DE: ATP synthase, Delta/Epsilon chain, long alpha-helix domain; InterPro: IPR020547 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta (in mitochondrial ATPase) or epsilon (in bacteria or chloroplast ATPase). The interaction site of subunit C of the F0 complex with the delta or epsilon subunit of the F1 complex may be important for connecting the rotor of F1 (gamma subunit) to the rotor of F0 (C subunit) []. In bacterial species, the delta subunit is the equivalent of the Oligomycin sensitive subunit (OSCP, IPR000711 from INTERPRO) in metazoans. The C-terminal domain of the epsilon subunit appears to act as an inhibitor of ATPase activity []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0045261 proton-transporting ATP synthase complex, catalytic core F(1); PDB: 3OAA_P 1BSN_A 1FS0_E 1AQT_A 1BSH_A 2RQ7_A 2RQ6_A 2E5Y_A 2QE7_H 2E5T_A ....
Probab=98.86 E-value=5.3e-09 Score=62.95 Aligned_cols=47 Identities=30% Similarity=0.340 Sum_probs=44.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHH
Q psy2899 86 SDLVEKQIEKEKILLENILYNKKSNIDYSITKAKLAIIIAQLKTIQY 132 (139)
Q Consensus 86 ~~iD~~~a~~~~~~a~~~l~~~~~~~~~~~a~~~l~ra~~rl~~~~~ 132 (139)
++||.++|++++++|++.|.+..++.++.+++..|.||.+||+++..
T Consensus 1 ~dID~~rA~~a~~~Ae~~l~~~~~~~e~~~A~~~L~rA~aRl~~~~~ 47 (48)
T PF00401_consen 1 EDIDEERAEEAKERAEERLEKAKSDKEYARAQAALKRAIARLQAAKK 47 (48)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCSSCSHHHHHHHHHHHHHHHHHHHCT
T ss_pred CcCCHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 58999999999999999999999899999999999999999998754
No 24
>PRK10579 hypothetical protein; Provisional
Probab=89.03 E-value=5 Score=27.35 Aligned_cols=61 Identities=13% Similarity=0.267 Sum_probs=47.9
Q ss_pred eeeecCceeEEEEecCcee---eeecC-------CCcceeeeecCeEEEEEECCCCeEEEEEEeccEEEEECC
Q psy2899 11 LLFSNKNIEFIVLPGELGD---LGVYP-------LHSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPD 73 (139)
Q Consensus 11 ~~f~~~~v~~V~~~t~~G~---~gIL~-------~H~p~it~L~~G~i~i~~~~~~~~~~~~v~gG~~~v~~~ 73 (139)
++|+| .|.|..+-..+|. +|||. -++|-+..+..|.++++.+++.+|+. +-.|-..+|-.|
T Consensus 6 vYFdG-kv~S~~~~~~dG~~kTlGVm~pGey~F~T~~~E~MeivsG~l~V~Lpg~~ew~~-~~aG~sF~Vpan 76 (94)
T PRK10579 6 EYFSG-KVKSIGFDSSSTGRASVGVMAEGEYTFSTAEPEEMTVISGALNVLLPGATDWQV-YEAGEVFNVPGH 76 (94)
T ss_pred eEECC-eEEEEEEEcCCCCeeEEEEEeeeEEEEcCCCcEEEEEEeeEEEEECCCCcccEE-eCCCCEEEECCC
Confidence 68999 9999999999965 77764 47888899999999999876344554 447777777777
No 25
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=77.25 E-value=20 Score=24.40 Aligned_cols=61 Identities=20% Similarity=0.321 Sum_probs=42.2
Q ss_pred eeeecCceeEEEEecCcee---eeec-CC------CcceeeeecCeEEEEEECCCCeEEEEEEeccEEEEECC
Q psy2899 11 LLFSNKNIEFIVLPGELGD---LGVY-PL------HSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPD 73 (139)
Q Consensus 11 ~~f~~~~v~~V~~~t~~G~---~gIL-~~------H~p~it~L~~G~i~i~~~~~~~~~~~~v~gG~~~v~~~ 73 (139)
+.|+| .|.|..+-..+|. +||| |+ +.|-+..+..|.+.++.+++..|+.| -.|-...|-.|
T Consensus 6 ~YFdG-kV~S~~~~~~dG~~~TlGVm~pGeY~F~T~~~E~M~vvsG~l~V~lpg~~ew~~~-~aGesF~Vpan 76 (94)
T PF06865_consen 6 VYFDG-KVKSITFEFADGSKKTLGVMLPGEYTFGTSAPERMEVVSGELEVKLPGEDEWQTY-SAGESFEVPAN 76 (94)
T ss_dssp EECCC-TEEEEEEEETTSEEEEEEEE-SECEEEEESS-EEEEEEESEEEEEETT-SS-EEE-ETT-EEEE-TT
T ss_pred EEeCC-eEEEEEEEcCCCCcceEEEEeeeEEEEcCCCCEEEEEEEeEEEEEcCCCcccEEe-CCCCeEEECCC
Confidence 67999 9999999999954 5554 33 66777788889999988763455544 47777777777
No 26
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=56.08 E-value=21 Score=33.21 Aligned_cols=48 Identities=15% Similarity=0.049 Sum_probs=38.5
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHhc----CCCchhHHHHHHHHHHHHHHH
Q psy2899 80 DTAIHGSDLVEKQIEKEKILLENILYN----KKSNIDYSITKAKLAIIIAQL 127 (139)
Q Consensus 80 ~~a~~~~~iD~~~a~~~~~~a~~~l~~----~~~~~~~~~a~~~l~ra~~rl 127 (139)
+-|...|+=|...|++.+.+|+++|.+ ..++.|+.+.-.+|+.|+.+.
T Consensus 457 ~lAl~iEdG~ls~A~~~Lr~AQe~L~eAL~~gAs~eEI~rLm~eLR~A~~~y 508 (820)
T PF13779_consen 457 DLALRIEDGDLSDAERRLRAAQEALREALERGASDEEIARLMQELREAMQDY 508 (820)
T ss_pred HHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 446677888999999999999888764 357888999888999988553
No 27
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=53.16 E-value=25 Score=32.85 Aligned_cols=48 Identities=15% Similarity=0.049 Sum_probs=38.3
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHhc----CCCchhHHHHHHHHHHHHHHH
Q psy2899 80 DTAIHGSDLVEKQIEKEKILLENILYN----KKSNIDYSITKAKLAIIIAQL 127 (139)
Q Consensus 80 ~~a~~~~~iD~~~a~~~~~~a~~~l~~----~~~~~~~~~a~~~l~ra~~rl 127 (139)
+-|...|+=|...|++++.+|+++|.+ ..++.|+.+.-.+|+.|+...
T Consensus 488 ~lAl~iEdG~ls~A~~~Lr~AQ~aL~eAL~~gAsdeEI~~Lm~eLR~Am~~y 539 (851)
T TIGR02302 488 SLALGIEDGDLSDAERRLRAAQDALKDALERGASDEEIKQLTDKLRAAMQTY 539 (851)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 346677888899999999999888765 357889999999999988543
No 28
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=52.46 E-value=1.3e+02 Score=24.76 Aligned_cols=101 Identities=16% Similarity=0.001 Sum_probs=53.8
Q ss_pred eeeecCCCcceeeeecCeE-EEEEECCCCeEEEEEEeccEEEEECCEEEEEccccccCCCCCHHHHHHHHHHH-------
Q psy2899 29 DLGVYPLHSPLITCIKPGF-IRIKISKKIEEKCIFVSGGIIDIQPDSVIVLADTAIHGSDLVEKQIEKEKILL------- 100 (139)
Q Consensus 29 ~~gIL~~H~p~it~L~~G~-i~i~~~~~~~~~~~~v~gG~~~v~~~~v~Ila~~a~~~~~iD~~~a~~~~~~a------- 100 (139)
.-+.++.+..+...+.|.- +.+...-+|....+.+.-|-..-.++.+--+-+... ..+...++..++.|
T Consensus 42 ~~~~~~~~~~~~G~v~~~~~~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~~~~---~~~l~~a~a~l~~a~a~~~~a 118 (385)
T PRK09859 42 SPGSVNVLSELPGRTVPYEVAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAPL---QAELNSAKGSLAKALSTASNA 118 (385)
T ss_pred EEEeccceEEEEEEEEEEEEEEEeccCcEEEEEEEcCCcCEecCCCEEEEECcHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666666666553 234332237777777777777666664444422211 11223333333322
Q ss_pred -------HHHHh-cCCCchhHHHHHHHHHHHHHHHHHHHH
Q psy2899 101 -------ENILY-NKKSNIDYSITKAKLAIIIAQLKTIQY 132 (139)
Q Consensus 101 -------~~~l~-~~~~~~~~~~a~~~l~ra~~rl~~~~~ 132 (139)
++..+ ..-+..++.+++.++..|.++++..+.
T Consensus 119 ~~~~~R~~~L~~~~~is~~~~d~a~~~~~~a~a~~~~a~a 158 (385)
T PRK09859 119 RITFNRQASLLKTNYVSRQDYDTARTQLNEAEANVTVAKA 158 (385)
T ss_pred HHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 233667777788778777777665543
No 29
>PF10732 DUF2524: Protein of unknown function (DUF2524); InterPro: IPR019668 This entry represents proteins with unknown function, and appear to be restricted to the Bacillaceae.
Probab=51.66 E-value=70 Score=21.31 Aligned_cols=43 Identities=12% Similarity=0.130 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHhcC-----CCchhHHHHHHHHHHHHHHHHHHHH
Q psy2899 90 EKQIEKEKILLENILYNK-----KSNIDYSITKAKLAIIIAQLKTIQY 132 (139)
Q Consensus 90 ~~~a~~~~~~a~~~l~~~-----~~~~~~~~a~~~l~ra~~rl~~~~~ 132 (139)
..+++.++..|++.+..+ -.+.+|..|+..|+-|-..|.-+..
T Consensus 11 lq~~e~~i~~a~eQ~~~~~rqehynd~eYt~Aq~~LE~a~neL~~l~~ 58 (84)
T PF10732_consen 11 LQQCEQAIRFAQEQFEEGSRQEHYNDEEYTEAQQMLEEAYNELEKLAH 58 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777666543 3788899999999988877755543
No 30
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=48.60 E-value=48 Score=26.30 Aligned_cols=46 Identities=11% Similarity=0.117 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHH
Q psy2899 87 DLVEKQIEKEKILLENILYNKKSNIDYSITKAKLAIIIAQLKTIQY 132 (139)
Q Consensus 87 ~iD~~~a~~~~~~a~~~l~~~~~~~~~~~a~~~l~ra~~rl~~~~~ 132 (139)
+.|...+.+.+++++..+...++..++...+.++..+.-|+..++.
T Consensus 65 e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~ 110 (239)
T COG1579 65 ESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLED 110 (239)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888998887778888888888888888777766543
No 31
>PF06890 Phage_Mu_Gp45: Bacteriophage Mu Gp45 protein; InterPro: IPR014462 This entry is represented by the Bacteriophage Mu, Gp45. The characteristics of the protein distribution suggest prophage matches.
Probab=46.14 E-value=44 Score=24.88 Aligned_cols=39 Identities=23% Similarity=0.276 Sum_probs=27.3
Q ss_pred eeecCeEEEEEECCCCeEEEEEEeccEEEEECCEEEEEcc
Q psy2899 41 TCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPDSVIVLAD 80 (139)
Q Consensus 41 t~L~~G~i~i~~~~~~~~~~~~v~gG~~~v~~~~v~Ila~ 80 (139)
..|.||++.+++.+ |....+-=.|.++++..+.+.|-+.
T Consensus 73 ~~L~~GEvalY~~~-G~~I~L~~~G~ii~~~~~~~~v~a~ 111 (162)
T PF06890_consen 73 KGLKPGEVALYDDE-GQKIHLKRDGRIIEVTCKTVTVNAA 111 (162)
T ss_pred cCCCCCcEEEEcCC-CCEEEEEecceEEeccCceEEEecC
Confidence 35999999999877 7765555335666677777666643
No 32
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=39.96 E-value=1.3e+02 Score=23.37 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHH
Q psy2899 92 QIEKEKILLENILYNKKSNIDYSITKAKLAIIIAQLKTIQY 132 (139)
Q Consensus 92 ~a~~~~~~a~~~l~~~~~~~~~~~a~~~l~ra~~rl~~~~~ 132 (139)
..++..++.++.|+++++-.|..+.+.+|.+...+|+.++.
T Consensus 143 ~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~ 183 (262)
T PF14257_consen 143 NLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEG 183 (262)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666677777788888888888888876654
No 33
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=39.84 E-value=77 Score=18.42 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=20.3
Q ss_pred CcceeeeecCeEE-EEEECCCCeEEEEEEecc
Q psy2899 36 HSPLITCIKPGFI-RIKISKKIEEKCIFVSGG 66 (139)
Q Consensus 36 H~p~it~L~~G~i-~i~~~~~~~~~~~~v~gG 66 (139)
+++.++.|.+|++ ++.... +.|..+- .+|
T Consensus 14 ~~~vv~~l~~g~~v~v~~~~-~~W~~V~-~~g 43 (55)
T PF06347_consen 14 NSPVVARLEPGVPVRVIECR-GGWCKVR-ADG 43 (55)
T ss_pred CCCEEEEECCCCEEEEEEcc-CCeEEEE-ECC
Confidence 6788899999954 455545 7787777 444
No 34
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=39.66 E-value=73 Score=23.52 Aligned_cols=44 Identities=11% Similarity=0.060 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy2899 90 EKQIEKEKILLENILYNKKSNIDYSITKAKLAIIIAQLKTIQYL 133 (139)
Q Consensus 90 ~~~a~~~~~~a~~~l~~~~~~~~~~~a~~~l~ra~~rl~~~~~~ 133 (139)
.++.++.++..++.+..+....|+.+++.++.....||+-++..
T Consensus 36 ~~~L~~El~~L~~~i~~Ar~~GDlsEak~~~~~~e~rI~~L~~~ 79 (160)
T PRK06342 36 LKALEDQLAQARAAYEAAQAIEDVNERRRQMARPLRDLRYLAAR 79 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHH
Confidence 56777888888878877766777777776777777777766553
No 35
>PF14014 DUF4230: Protein of unknown function (DUF4230)
Probab=38.73 E-value=1.4e+02 Score=21.08 Aligned_cols=54 Identities=9% Similarity=0.022 Sum_probs=30.6
Q ss_pred EEEEEccccccCCCCCHHHHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHHHHHH
Q psy2899 74 SVIVLADTAIHGSDLVEKQIEKEKILLENILYNK-KSNIDYSITKAKLAIIIAQL 127 (139)
Q Consensus 74 ~v~Ila~~a~~~~~iD~~~a~~~~~~a~~~l~~~-~~~~~~~~a~~~l~ra~~rl 127 (139)
...+.-...-+...++.+...+...+|++.+.+. ....-+.+|+...++.+..+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~a~~~~i~~~A~~~a~~~l~~l 143 (157)
T PF14014_consen 89 SIKVYDEKGGWFNPITPEDQNEAQKEAKKKIEQEANESGILEQAKENAEKALEQL 143 (157)
T ss_pred ceEEEEccCCccCCCCHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 3444433333444467777777788877777653 33444556666655555443
No 36
>PF09650 PHA_gran_rgn: Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn); InterPro: IPR013433 Proteins in this entry are encoded by genes involved in either polyhydroxyalkanoic acid (PHA) biosynthesis or utilisation, including proteins at found at the surface of PHA granules. These proteins have so far been predominantly found in the Pseudomonadales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=38.06 E-value=47 Score=21.93 Aligned_cols=33 Identities=18% Similarity=0.038 Sum_probs=22.4
Q ss_pred eeeeecCceeEEEEecCceeeeecCCCcceeeee
Q psy2899 10 GLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCI 43 (139)
Q Consensus 10 ~~~f~~~~v~~V~~~t~~G~~gIL~~H~p~it~L 43 (139)
..-|++ +.-...-++.+|.+-|.|+|..+=..|
T Consensus 32 ~~~W~g-d~l~f~~~gv~G~l~V~~d~v~l~v~L 64 (87)
T PF09650_consen 32 ECTWEG-DRLSFSGQGVDGTLDVADDHVRLEVKL 64 (87)
T ss_pred EEEEEc-CEEEEEeCCceEEEEEcCCEEEEEEEc
Confidence 345667 666777777778888777777655444
No 37
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=37.83 E-value=1.6e+02 Score=21.52 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCchh---HHHHHHHHHHHHHHHHHHHHHH
Q psy2899 90 EKQIEKEKILLENILYNKKSNID---YSITKAKLAIIIAQLKTIQYLR 134 (139)
Q Consensus 90 ~~~a~~~~~~a~~~l~~~~~~~~---~~~a~~~l~ra~~rl~~~~~~~ 134 (139)
..+.++++.+.+++++......| +.+.++++.+....|+......
T Consensus 42 ~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~ 89 (161)
T PF04420_consen 42 QRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSL 89 (161)
T ss_dssp HHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777777776444444 5667788888888777766543
No 38
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.15 E-value=1.3e+02 Score=20.25 Aligned_cols=63 Identities=11% Similarity=0.231 Sum_probs=43.3
Q ss_pred CeeeeecCceeEEEEecCc---eeeeecCC-------CcceeeeecCeEEEEEECCCCeEEEEEEeccEEEEECC
Q psy2899 9 EGLLFSNKNIEFIVLPGEL---GDLGVYPL-------HSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPD 73 (139)
Q Consensus 9 ~~~~f~~~~v~~V~~~t~~---G~~gIL~~-------H~p~it~L~~G~i~i~~~~~~~~~~~~v~gG~~~v~~~ 73 (139)
.-..|+| +|+++.+...+ -..|||.- -+|-+.....|-++++..++.+|+.|. .|-.+.|-.|
T Consensus 4 ~NeYFdG-kvkSigF~~~s~g~asVGVm~~geytFgTa~~E~Mtvv~Gal~v~lpgs~dWq~~~-~Ge~F~Vpgn 76 (94)
T COG3123 4 SNEYFDG-KVKSIGFSSSSTGRASVGVMAPGEYTFGTAAPEEMTVVSGALTVLLPGSDDWQVYT-AGEVFNVPGN 76 (94)
T ss_pred cceeecc-eEEEEEeccCCCCceeEEEEeceeEEeccCCceEEEEEeeEEEEEcCCCcccEEec-CCceEEcCCC
Confidence 3478999 99999987663 35777754 346666777788888876645665443 6666666665
No 39
>COG1795 Formaldehyde-activating enzyme nesessary for methanogenesis [Energy production and conversion]
Probab=36.27 E-value=17 Score=27.06 Aligned_cols=15 Identities=27% Similarity=0.724 Sum_probs=13.2
Q ss_pred CCCcceeeeecCeEE
Q psy2899 34 PLHSPLITCIKPGFI 48 (139)
Q Consensus 34 ~~H~p~it~L~~G~i 48 (139)
.||+|+++.|+|++.
T Consensus 43 ~GhtPllavlrPNl~ 57 (170)
T COG1795 43 QGHTPLLAVLRPNLA 57 (170)
T ss_pred cCCCceEEEecCCCC
Confidence 489999999999864
No 40
>PRK12438 hypothetical protein; Provisional
Probab=32.58 E-value=1.1e+02 Score=29.32 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHH
Q psy2899 91 KQIEKEKILLENILYNKKSNIDYSITKAKLAIIIAQLKTI 130 (139)
Q Consensus 91 ~~a~~~~~~a~~~l~~~~~~~~~~~a~~~l~ra~~rl~~~ 130 (139)
++++++++++++.+++ .+-..|-+|+.+|++|..|...+
T Consensus 951 ~~~~~A~~~~~~A~~~-gd~~~yG~A~~~l~~A~~~~~~~ 989 (991)
T PRK12438 951 AELRETLADLRSAQRS-GDFTAYGAALDRLEKAIDAYETP 989 (991)
T ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHhc
Confidence 3455555555555543 35567888999999999886543
No 41
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=32.02 E-value=1.1e+02 Score=21.00 Aligned_cols=39 Identities=15% Similarity=0.056 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHH
Q psy2899 87 DLVEKQIEKEKILLENILYNKK-SNIDYSITKAKLAIIIA 125 (139)
Q Consensus 87 ~iD~~~a~~~~~~a~~~l~~~~-~~~~~~~a~~~l~ra~~ 125 (139)
+.|..-.++.+.+.++.+.+.. ++.++++++.+++|.+.
T Consensus 35 ~~n~~iyr~qL~ELe~d~~~G~l~~~e~~~~~~El~rrLL 74 (117)
T TIGR03142 35 ELNLAVYRDRLAELERDLAEGLLDEAEAEAARAELQRRLL 74 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 4566667778888877777643 67778888888888764
No 42
>COG0251 TdcF Putative translation initiation inhibitor, yjgF family [Translation, ribosomal structure and biogenesis]
Probab=31.26 E-value=1.2e+02 Score=21.41 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=33.8
Q ss_pred eEEEEEEeccEEEEECCEEEEEccccccCCCCCHHHHHHHHHHHHHHHhcCCCc
Q psy2899 57 EEKCIFVSGGIIDIQPDSVIVLADTAIHGSDLVEKQIEKEKILLENILYNKKSN 110 (139)
Q Consensus 57 ~~~~~~v~gG~~~v~~~~v~Ila~~a~~~~~iD~~~a~~~~~~a~~~l~~~~~~ 110 (139)
......+.||++++.+..-.--....+..+++ .+++++.++..+..|+.+.++
T Consensus 18 ~yS~av~~~~~vfvSGQi~~~~~g~~v~~~d~-~~Q~~~~l~ni~a~L~~aG~~ 70 (130)
T COG0251 18 PYSQAVVAGGLVFVSGQIPLDPTGELVGGEDI-EAQTRQALANIKAVLEAAGST 70 (130)
T ss_pred CccceEEECCEEEEeCcCCcCCCCcccCCCCH-HHHHHHHHHHHHHHHHHcCCC
Confidence 44556778888888775222113344444444 567888888888888877644
No 43
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=29.99 E-value=1.9e+02 Score=23.94 Aligned_cols=20 Identities=10% Similarity=-0.447 Sum_probs=12.2
Q ss_pred CeEEEEEEeccEEEEECCEE
Q psy2899 56 IEEKCIFVSGGIIDIQPDSV 75 (139)
Q Consensus 56 ~~~~~~~v~gG~~~v~~~~v 75 (139)
|....+.+.-|-..-.+..+
T Consensus 74 G~V~~v~v~~Gd~VkkGqvL 93 (397)
T PRK15030 74 GIILKRNFKEGSDIEAGVSL 93 (397)
T ss_pred EEEEEEEcCCCCEecCCCEE
Confidence 66666666666655555533
No 44
>COG1667 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.78 E-value=91 Score=24.86 Aligned_cols=44 Identities=16% Similarity=0.226 Sum_probs=30.6
Q ss_pred ceeeeecCC--CcceeeeecCeEEEEEECCCCeEEEEEEeccEEEEECCEE
Q psy2899 27 LGDLGVYPL--HSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPDSV 75 (139)
Q Consensus 27 ~G~~gIL~~--H~p~it~L~~G~i~i~~~~~~~~~~~~v~gG~~~v~~~~v 75 (139)
+++.|-|.. -..+++.|..|.++|.... |. .++.||+.|.++++
T Consensus 11 ~~~v~s~~e~~le~iv~~l~TG~v~it~r~-ge----~l~ea~i~V~~GkI 56 (254)
T COG1667 11 DMYVGSLNERKLEEIVLSLSTGYVRITIRI-GE----NLNEAFIFVEGGKI 56 (254)
T ss_pred ccccccchhhhHHHHHhhccceeEEEEEec-Cc----cccceEEEEECCEE
Confidence 366676766 6778899999999987655 44 34566666666644
No 45
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=29.40 E-value=2e+02 Score=19.97 Aligned_cols=40 Identities=18% Similarity=0.118 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhcCCC--chh----HHHHHHHHHHHHHHHHHH
Q psy2899 91 KQIEKEKILLENILYNKKS--NID----YSITKAKLAIIIAQLKTI 130 (139)
Q Consensus 91 ~~a~~~~~~a~~~l~~~~~--~~~----~~~a~~~l~ra~~rl~~~ 130 (139)
...+...+.+++.|.+..+ ..+ +.+++..|++++.|+.-.
T Consensus 15 ~el~~L~d~lEevL~ssg~~a~~e~~~lR~r~~~~Lk~~r~rl~~~ 60 (104)
T COG4575 15 AELQELLDTLEEVLKSSGSLAGDEAEELRSKAESALKEARDRLGDT 60 (104)
T ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566677778888876542 222 455677777777776544
No 46
>smart00658 RPOL8c RNA polymerase subunit 8. subunit of RNA polymerase I, II and III
Probab=29.21 E-value=98 Score=22.62 Aligned_cols=44 Identities=16% Similarity=0.168 Sum_probs=34.5
Q ss_pred CEEEEEecCeeeeecCceeEEEEecCceeeeecCCCcceeeeecCe
Q psy2899 1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPG 46 (139)
Q Consensus 1 ~~l~IvtP~~~~f~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G 46 (139)
|+|+=+-|++..|+. |.++...+.++++.+.-+-..-+-++..|
T Consensus 9 F~V~~iDp~gKkfdr--VSRi~~~S~~~~~~l~LDiNtelyPv~~g 52 (143)
T smart00658 9 FKVKSVDPDGKKFDK--VSRIFAESEYLQMELTLDINSEIYPLAVG 52 (143)
T ss_pred EEEEEECCCCCeEcc--EEEEEEEcCCCceEEEEEecceEEeccCC
Confidence 467778899999997 99999999999987766655555555554
No 47
>TIGR02610 PHA_gran_rgn putative polyhydroxyalkanoic acid system protein. All members of this family are encoded by genes polyhydroxyalkanoic acid (PHA) biosynthesis and utilization genes, including proteins at found at the surface of PHA granules. Examples so far are found in the Pseudomonales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=28.60 E-value=1e+02 Score=20.57 Aligned_cols=28 Identities=14% Similarity=0.100 Sum_probs=17.7
Q ss_pred eeeecCceeEEEEecCceeeeecCCCcce
Q psy2899 11 LLFSNKNIEFIVLPGELGDLGVYPLHSPL 39 (139)
Q Consensus 11 ~~f~~~~v~~V~~~t~~G~~gIL~~H~p~ 39 (139)
.-|+| +.-.+...+.+|.+-|.++|..+
T Consensus 36 ~~W~G-D~l~F~~~gv~G~l~V~~d~v~v 63 (91)
T TIGR02610 36 SHWEG-DTLRIARSGVDGAVHLGPQSIRV 63 (91)
T ss_pred eEEeC-CEEEEEEeeeeEEEEEcCCeEEE
Confidence 44666 66666666666666666666544
No 48
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=28.48 E-value=3.1e+02 Score=21.93 Aligned_cols=84 Identities=12% Similarity=-0.063 Sum_probs=40.8
Q ss_pred CeEEEEEECCCCeEEEEEEeccEEEEECCEEEEEccccccCCCCCHHHHHHHHHHHHHHHhcCC---CchhHHHHHHHHH
Q psy2899 45 PGFIRIKISKKIEEKCIFVSGGIIDIQPDSVIVLADTAIHGSDLVEKQIEKEKILLENILYNKK---SNIDYSITKAKLA 121 (139)
Q Consensus 45 ~G~i~i~~~~~~~~~~~~v~gG~~~v~~~~v~Ila~~a~~~~~iD~~~a~~~~~~a~~~l~~~~---~~~~~~~a~~~l~ 121 (139)
+..+.|...-+|....+++..|=..-.++.+--+ +..... .+.+.++..++.++..+.+.. ...++..++.++.
T Consensus 41 ~~~i~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~l-d~~~~~--~~l~~~~a~l~~~~~~l~~~~~~~~~~~i~~~~~~l~ 117 (331)
T PRK03598 41 IRTVNLGFRVGGRLASLAVDEGDAVKAGQVLGEL-DAAPYE--NALMQAKANVSVAQAQLDLMLAGYRDEEIAQARAAVK 117 (331)
T ss_pred eEEEEeecccCcEEEEEEcCCCCEEcCCCEEEEE-ChHHHH--HHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 4455555443377777888888664444444333 222221 223444455555544443321 2223444555555
Q ss_pred HHHHHHHHHH
Q psy2899 122 IIIAQLKTIQ 131 (139)
Q Consensus 122 ra~~rl~~~~ 131 (139)
.+.++++.++
T Consensus 118 ~ak~~l~~a~ 127 (331)
T PRK03598 118 QAQAAYDYAQ 127 (331)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 49
>CHL00173 cpeA phycoerythrin alpha subunit; Provisional
Probab=28.33 E-value=72 Score=23.80 Aligned_cols=30 Identities=17% Similarity=0.176 Sum_probs=25.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2899 108 KSNIDYSITKAKLAIIIAQLKTIQYLRFKK 137 (139)
Q Consensus 108 ~~~~~~~~a~~~l~ra~~rl~~~~~~~~~~ 137 (139)
-++.|+...+..+.++.+|+++++.++++.
T Consensus 19 ls~~eL~~l~~~~~~a~~rl~aa~~L~~na 48 (164)
T CHL00173 19 PSSSDLESVQGNIQRAAARLEAAEKLASNH 48 (164)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377888899999999999999999887664
No 50
>PF01797 Y1_Tnp: Transposase IS200 like; InterPro: IPR002686 Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This entry represents a domain found in transposases for IS200 from Escherichia coli []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2F5G_B 2F4F_B 2EC2_F 2XM3_C 2XQC_D 2XO6_A 2XMA_E 2VJV_B 2VIH_B 2VJU_A ....
Probab=28.19 E-value=34 Score=22.96 Aligned_cols=17 Identities=35% Similarity=0.534 Sum_probs=12.2
Q ss_pred eeecCCCcceeeeecCe
Q psy2899 30 LGVYPLHSPLITCIKPG 46 (139)
Q Consensus 30 ~gIL~~H~p~it~L~~G 46 (139)
+.+||||..++..+.|.
T Consensus 45 ~~vm~nHvHllv~~~~~ 61 (121)
T PF01797_consen 45 FVVMPNHVHLLVSIPPK 61 (121)
T ss_dssp EEEETTEEEEEEEE-TT
T ss_pred ecccCcccceeeeeccc
Confidence 67888888888777664
No 51
>CHL00088 apcB allophycocyanin beta subunit
Probab=27.72 E-value=1.1e+02 Score=22.72 Aligned_cols=42 Identities=0% Similarity=-0.208 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2899 95 KEKILLENILYNKKSNIDYSITKAKLAIIIAQLKTIQYLRFKK 137 (139)
Q Consensus 95 ~~~~~a~~~l~~~~~~~~~~~a~~~l~ra~~rl~~~~~~~~~~ 137 (139)
+.+..|..+-. --++.|+...+.-+..+..||++++.++.+.
T Consensus 7 ~~i~~AD~~gR-yls~~eL~~l~~~~~~~~~Rl~aa~~L~~na 48 (161)
T CHL00088 7 SVINAADVQGK-YLDDNSVEKLRSYFQTGELRVRAAATIAANA 48 (161)
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44444444322 2367888899999999999999999887653
No 52
>TIGR03784 marine_sortase sortase, marine proteobacterial type. Members of this protein family are sortase enzymes, cysteine transpeptidases involved in protein sorting activities. Members of this family tend to be found in proteobacteria, rather than in Gram-positive bacteria where sortases attach proteins to the Gram-positive cell wall or participate in pilin cross-linking. Many species with this sortase appear to contain a signal target sequence, a protein with a Vault protein inter-alpha-trypsin domain (pfam08487) and a von Willebrand factor type A domain (pfam00092), encoded by an adjacent gene. These sortases are designated subfamily 6 according to Comfort and Clubb (2004).
Probab=27.45 E-value=91 Score=23.27 Aligned_cols=53 Identities=19% Similarity=0.297 Sum_probs=30.6
Q ss_pred EecCceeeeecCCCcc----eeeeecCe-EEEEEECCCCeEEEEEEeccEEEEECCEEEEE
Q psy2899 23 LPGELGDLGVYPLHSP----LITCIKPG-FIRIKISKKIEEKCIFVSGGIIDIQPDSVIVL 78 (139)
Q Consensus 23 ~~t~~G~~gIL~~H~p----~it~L~~G-~i~i~~~~~~~~~~~~v~gG~~~v~~~~v~Il 78 (139)
.|+..|. -|+++|.. .+..|++| .|.+...+ |+...|-|.+ .-.+.++...++
T Consensus 86 ~PG~~Gn-~VIAGHrdt~F~~L~~L~~GD~I~v~~~~-g~~~~Y~V~~-~~iV~~~d~~v~ 143 (174)
T TIGR03784 86 QPGAQGN-SVIAGHRDTHFAFLQELRPGDVIRLQTPD-GQWQSYQVTA-TRVVDESETGLD 143 (174)
T ss_pred CCCCCCc-EEEEeeCCccCCChhhCCCCCEEEEEECC-CeEEEEEEeE-EEEECCccceec
Confidence 4555555 45666764 35677888 57777766 6665566544 334444444443
No 53
>PHA02106 hypothetical protein
Probab=27.30 E-value=58 Score=21.37 Aligned_cols=20 Identities=15% Similarity=0.232 Sum_probs=14.2
Q ss_pred ceeEEEEecCceeeeecCCC
Q psy2899 17 NIEFIVLPGELGDLGVYPLH 36 (139)
Q Consensus 17 ~v~~V~~~t~~G~~gIL~~H 36 (139)
+-.-|---|.+|+||.+|..
T Consensus 31 ~sylvky~s~dgefg~~ps~ 50 (91)
T PHA02106 31 DSYLVKYLTFDGEFGLVPSF 50 (91)
T ss_pred CeeEEEEEEecccccCchhH
Confidence 34445567899999988853
No 54
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=26.77 E-value=2.7e+02 Score=21.09 Aligned_cols=25 Identities=8% Similarity=0.102 Sum_probs=18.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHH
Q psy2899 108 KSNIDYSITKAKLAIIIAQLKTIQY 132 (139)
Q Consensus 108 ~~~~~~~~a~~~l~ra~~rl~~~~~ 132 (139)
.+..++..++..+..+.++++.++.
T Consensus 51 ~s~~~~~~~~~~~~~~~~~~~~~~~ 75 (265)
T TIGR00999 51 IPRQEFESAEYALEEAQAEVQAAKS 75 (265)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667788888888888888877654
No 55
>PF08988 DUF1895: Protein of unknown function (DUF1895); InterPro: IPR015081 The YscE protein, produced by the pathogen Yersinia, assumes a secondary structure composed of two anti-parallel alpha-helices separated by a flexible loop. The function of this protein is, as yet, unknown. ; PDB: 1ZW0_B 2P58_A 2UWJ_E 2Q1K_D 3PH0_B.
Probab=26.76 E-value=1.7e+02 Score=18.50 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2899 93 IEKEKILLENILYNKKSNIDYSITKAKLAIIIAQLKTIQYLRFK 136 (139)
Q Consensus 93 a~~~~~~a~~~l~~~~~~~~~~~a~~~l~ra~~rl~~~~~~~~~ 136 (139)
..++....++.|....+..+|..++..-+...+-+.+++.+..+
T Consensus 23 L~~a~~~vkr~L~~G~~P~eyQq~q~~~~AieAA~~Vie~~~~~ 66 (68)
T PF08988_consen 23 LRQAQSQVKRKLDRGGTPQEYQQLQQQYDAIEAAIAVIETLEGN 66 (68)
T ss_dssp HHHHHHHHHHHHTCTSSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444455666666778888988887777777777777766543
No 56
>PLN02372 violaxanthin de-epoxidase
Probab=26.61 E-value=4.3e+02 Score=22.96 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=23.8
Q ss_pred EEEEEecCeeeeecCceeEEEEecCceeeeecCCCcce
Q psy2899 2 RIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPL 39 (139)
Q Consensus 2 ~l~IvtP~~~~f~~~~v~~V~~~t~~G~~gIL~~H~p~ 39 (139)
..+|-||+|-||....++..+.. .-.=|||.||...
T Consensus 243 ~wRv~tpdGgF~~Rs~vq~fvqd--~~~P~il~n~~Ne 278 (455)
T PLN02372 243 NWRINTPDGGFFTRSAVQRFVQD--PNQPGILYNHDNE 278 (455)
T ss_pred EEEEecCCCceEeecceeeeecc--CCCCceEEcCCcc
Confidence 46788999999976467776541 1122478888554
No 57
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=26.14 E-value=2.2e+02 Score=19.37 Aligned_cols=39 Identities=21% Similarity=0.159 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH
Q psy2899 93 IEKEKILLENILYNKKSNIDYSITKAKLAIIIAQLKTIQ 131 (139)
Q Consensus 93 a~~~~~~a~~~l~~~~~~~~~~~a~~~l~ra~~rl~~~~ 131 (139)
...++...+.++.+..+..|..+.+.++..-.-+++..+
T Consensus 47 ~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~ 85 (106)
T PF10805_consen 47 HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELS 85 (106)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 367788888888988888888888888777766665553
No 58
>PF14346 DUF4398: Domain of unknown function (DUF4398)
Probab=25.85 E-value=1.5e+02 Score=19.57 Aligned_cols=16 Identities=13% Similarity=-0.039 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHh
Q psy2899 90 EKQIEKEKILLENILY 105 (139)
Q Consensus 90 ~~~a~~~~~~a~~~l~ 105 (139)
...|++.+.+|+..+.
T Consensus 42 l~~A~~~L~~A~~a~~ 57 (103)
T PF14346_consen 42 LKEAREKLQRAKAALD 57 (103)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555544444
No 59
>PF09631 Sen15: Sen15 protein; InterPro: IPR018593 The Sen15 subunit of the tRNA intron-splicing endonuclease is one of the two structural subunits of this heterotetrameric enzyme. Residues 36-157 of this subunit possess a novel homodimeric fold. Each monomer consists of three alpha-helices and a mixed antiparallel/parallel beta-sheet. Two monomers of Sen15 fold with two monomers of Sen34, one of the two catalytic subunits, to form an alpha2-beta2 tetramer as part of the functional endonuclease assembly []. ; PDB: 2GW6_B.
Probab=25.65 E-value=98 Score=20.75 Aligned_cols=23 Identities=13% Similarity=0.111 Sum_probs=11.4
Q ss_pred EEEEEECCCCeEEEEEEeccEEEE
Q psy2899 47 FIRIKISKKIEEKCIFVSGGIIDI 70 (139)
Q Consensus 47 ~i~i~~~~~~~~~~~~v~gG~~~v 70 (139)
.|-|..+| ++..+|+++.|++.=
T Consensus 76 ~LAiv~~D-sTiVYY~i~~GivkP 98 (101)
T PF09631_consen 76 LLAIVDDD-STIVYYKIHDGIVKP 98 (101)
T ss_dssp EEEEE-TT-S-EEEEEEE------
T ss_pred EEEEEcCC-CCEEEEEEeCCccCC
Confidence 34455666 999999999999753
No 60
>COG3566 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.64 E-value=41 Score=28.10 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=21.5
Q ss_pred eeeecCCCcceeeeecCe-EEEEEECC
Q psy2899 29 DLGVYPLHSPLITCIKPG-FIRIKISK 54 (139)
Q Consensus 29 ~~gIL~~H~p~it~L~~G-~i~i~~~~ 54 (139)
+.+|+-||..++..=+.| .++|.+.|
T Consensus 149 q~~i~~NHlAiVa~gR~Gp~~riad~D 175 (379)
T COG3566 149 QIRIRGNHLAIVAAGRAGPQCRIADGD 175 (379)
T ss_pred ecceecceeeeeeccccCCceeecCCC
Confidence 678999999999988876 67787655
No 61
>PF07253 Gypsy: Gypsy protein; InterPro: IPR009882 This family consists of several Gypsy/Env proteins from Drosophila and Ceratitis fruit fly species. Gypsy is an endogenous retrovirus of Drosophila melanogaster. Phylogenetic studies suggest that occasional horizontal transfer events of gypsy occur between Drosophila species. Gypsy possesses infective properties associated with the products of the envelope gene that might be at the origin of these interspecies transfers [].
Probab=24.51 E-value=2.1e+02 Score=25.04 Aligned_cols=50 Identities=16% Similarity=0.040 Sum_probs=33.8
Q ss_pred eeeecCCCcceeeeecCeEEEEEECCCCeE-----EEEEEeccEEEEECCEEEEEc
Q psy2899 29 DLGVYPLHSPLITCIKPGFIRIKISKKIEE-----KCIFVSGGIIDIQPDSVIVLA 79 (139)
Q Consensus 29 ~~gIL~~H~p~it~L~~G~i~i~~~~~~~~-----~~~~v~gG~~~v~~~~v~Ila 79 (139)
.....++|.+-++.+++|.+-+...+ |.. ....+.|=|+.--+..+.|--
T Consensus 302 ~C~~~~~hl~~I~~VDdG~IilNd~n-g~I~~~~~~~~~l~GTyLIqFnetI~Ing 356 (472)
T PF07253_consen 302 HCETNPSHLKPITEVDDGTIILNDFN-GTITWDGGTERKLSGTYLIQFNETIKING 356 (472)
T ss_pred CCCCccccCCceeeecccEEEEecCc-eEEeeCCcceEEEeeeEEEEEeeEEEECC
Confidence 34488999999999999999776543 222 245677777766544555543
No 62
>PF11197 DUF2835: Protein of unknown function (DUF2835); InterPro: IPR021363 This is a bacterial family of uncharacterised proteins. One member of this family (A4VM42 from SWISSPROT) is annotated as the A subunit of Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV).
Probab=24.44 E-value=2e+02 Score=18.29 Aligned_cols=42 Identities=17% Similarity=0.336 Sum_probs=34.7
Q ss_pred eeecCceeEEEEecCceeeeecCCC--cceeeeec-CeEEEEEECC
Q psy2899 12 LFSNKNIEFIVLPGELGDLGVYPLH--SPLITCIK-PGFIRIKISK 54 (139)
Q Consensus 12 ~f~~~~v~~V~~~t~~G~~gIL~~H--~p~it~L~-~G~i~i~~~~ 54 (139)
.|.| .+..|.+.+.+|.-=-+|-+ -|+++... -|--++..++
T Consensus 15 ~Y~G-~a~~V~v~s~~Gr~v~~Pa~~lRpFvt~~Gv~G~F~l~~d~ 59 (68)
T PF11197_consen 15 YYQG-AASKVVVRSDDGRRVQFPARHLRPFVTHDGVHGRFRLEFDD 59 (68)
T ss_pred hccc-cccEEEEEecCCcEEEEeHHHCcceecCCCceEEEEEEECC
Confidence 5899 89999999999999888876 48888887 5777776654
No 63
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=24.09 E-value=3.2e+02 Score=23.09 Aligned_cols=43 Identities=9% Similarity=0.124 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHH
Q psy2899 90 EKQIEKEKILLENILYNKKSNIDYSITKAKLAIIIAQLKTIQY 132 (139)
Q Consensus 90 ~~~a~~~~~~a~~~l~~~~~~~~~~~a~~~l~ra~~rl~~~~~ 132 (139)
...+++.++.|++.|.+..+..-...|+.++..+..++..++.
T Consensus 55 ~~~~~~~l~~a~~~l~~~~D~em~ema~~Ei~~~~~~~~~le~ 97 (363)
T COG0216 55 YKKAQEDLEDAKEMLAEEKDPEMREMAEEEIKELEAKIEELEE 97 (363)
T ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888888888764433356699999999888877654
No 64
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=23.85 E-value=3.8e+02 Score=22.01 Aligned_cols=20 Identities=10% Similarity=-0.267 Sum_probs=11.4
Q ss_pred CeEEEEEEeccEEEEECCEE
Q psy2899 56 IEEKCIFVSGGIIDIQPDSV 75 (139)
Q Consensus 56 ~~~~~~~v~gG~~~v~~~~v 75 (139)
|....+++.-|-..-.++.+
T Consensus 72 G~V~~v~v~~Gd~VkkGq~L 91 (385)
T PRK09578 72 GIVTARTYEEGQEVKQGAVL 91 (385)
T ss_pred EEEEEEECCCCCEEcCCCEE
Confidence 66666666666554444433
No 65
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=23.84 E-value=2.2e+02 Score=18.63 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHHHHHHHHHH
Q psy2899 88 LVEKQIEKEKILLENILYNKK-SNIDYSITKAKLAIIIAQLKTIQYL 133 (139)
Q Consensus 88 iD~~~a~~~~~~a~~~l~~~~-~~~~~~~a~~~l~ra~~rl~~~~~~ 133 (139)
-|+..+++.+...+.++.... +..++.+.+.+| +.||..+++.
T Consensus 28 ~Dp~~i~~~L~~L~~~~e~GEIseeEf~~~E~eL---L~rL~~~~~~ 71 (79)
T PF05120_consen 28 YDPAAIRRELAELQEALEAGEISEEEFERREDEL---LDRLEEARRR 71 (79)
T ss_pred cCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH---HHHHHHHHHH
Confidence 388999999999998888654 667777777665 4555555543
No 66
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.47 E-value=2.2e+02 Score=26.77 Aligned_cols=49 Identities=16% Similarity=0.127 Sum_probs=36.3
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHHHHHHHHH
Q psy2899 84 HGSDLVEKQIEKEKILLENILYNKK-SNIDYSITKAKLAIIIAQLKTIQY 132 (139)
Q Consensus 84 ~~~~iD~~~a~~~~~~a~~~l~~~~-~~~~~~~a~~~l~ra~~rl~~~~~ 132 (139)
.-.+||...+..+++..++++++.. ...+..-+++.|..+.++.+++++
T Consensus 663 ~fa~ID~~Sa~rqIael~~~lE~L~~t~~~~~~~~~~l~aaQT~~~vler 712 (1104)
T COG4913 663 NFASIDLPSAQRQIAELQARLERLTHTQSDIAIAKAALDAAQTRQKVLER 712 (1104)
T ss_pred chhhcchhhHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 4467898888888888877777644 344455678888888888888776
No 67
>CHL00089 apcF allophycocyanin beta 18 subunit
Probab=23.39 E-value=1.4e+02 Score=22.37 Aligned_cols=30 Identities=3% Similarity=0.056 Sum_probs=24.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2899 108 KSNIDYSITKAKLAIIIAQLKTIQYLRFKK 137 (139)
Q Consensus 108 ~~~~~~~~a~~~l~ra~~rl~~~~~~~~~~ 137 (139)
-++.|+...+.-+..+..||++++.++.+.
T Consensus 19 ls~~eL~~l~~~~~~~~~Rl~aa~~L~~na 48 (169)
T CHL00089 19 LDKNAITQLNSYFSSASDRIKIVEIINAQA 48 (169)
T ss_pred CCHHHHHHHHHHHHhHHHHHHHHHHHHHhH
Confidence 367788889999999999999999887653
No 68
>PRK00068 hypothetical protein; Validated
Probab=23.19 E-value=1.7e+02 Score=28.03 Aligned_cols=39 Identities=8% Similarity=-0.024 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHH
Q psy2899 90 EKQIEKEKILLENILYNKKSNIDYSITKAKLAIIIAQLKT 129 (139)
Q Consensus 90 ~~~a~~~~~~a~~~l~~~~~~~~~~~a~~~l~ra~~rl~~ 129 (139)
.++|++++++|++++++ .+=..+-+++.+|+.++.++..
T Consensus 930 l~~a~~a~~~a~~Alk~-GDw~~yG~a~~~L~~al~~~~~ 968 (970)
T PRK00068 930 LKEAQDAYNKAIEAQKS-GDFAEYGEALKELDDALNKYNK 968 (970)
T ss_pred HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHh
Confidence 45777777777777764 3556677888888888887754
No 69
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=23.19 E-value=3.6e+02 Score=20.90 Aligned_cols=21 Identities=29% Similarity=0.267 Sum_probs=12.4
Q ss_pred CchhHHHHHHHHHHHHHHHHH
Q psy2899 109 SNIDYSITKAKLAIIIAQLKT 129 (139)
Q Consensus 109 ~~~~~~~a~~~l~ra~~rl~~ 129 (139)
+..++..++.++..+.++++.
T Consensus 100 s~~~~~~~~~~~~~~~~~l~~ 120 (322)
T TIGR01730 100 SQADLDDAKAAVEAAQADLEA 120 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666665543
No 70
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=23.17 E-value=2.3e+02 Score=18.65 Aligned_cols=11 Identities=18% Similarity=0.440 Sum_probs=5.2
Q ss_pred eecCeEEEEEE
Q psy2899 42 CIKPGFIRIKI 52 (139)
Q Consensus 42 ~L~~G~i~i~~ 52 (139)
.++|.-|++..
T Consensus 34 ~~d~~Sl~V~~ 44 (104)
T PF13600_consen 34 SLDPDSLRVSG 44 (104)
T ss_pred ccCCCcEEEEe
Confidence 34455555543
No 71
>PF04371 PAD_porph: Porphyromonas-type peptidyl-arginine deiminase; InterPro: IPR007466 Peptidyl-arginine deiminase (PAD) enzymes catalyse the deimination of the guanidino group from carboxy-terminal arginine residues of various peptides to produce ammonia. PAD from Porphyromonas gingivalis (Bacteroides gingivalis) (PPAD) appears to be evolutionarily unrelated to mammalian PAD (IPR004303 from INTERPRO), which is a metalloenzyme. PPAD is thought to belong to the same superfamily as aminotransferase and arginine deiminase, and to form an alpha/beta propeller structure. This family has previously been named PPADH (Porphyromonas peptidyl-arginine deiminase homologs) []. The predicted catalytic residues in PPAD (Q9RQJ2 from SWISSPROT) are Asp130, Asp187, His236, Asp238 and Cys351 []. These are absolutely conserved with the exception of Asp187 which is absent in two family members. PPAD is also able to catalyse the deimination of free L-arginine, but has primarily peptidyl-arginine specificity. It may have a FMN cofactor [].; PDB: 2Q3U_A 1VKP_A 3H7C_X 3H7K_A 2EWO_K 1ZBR_B 1XKN_A 2JER_B 3HVM_A 2CMU_A.
Probab=23.06 E-value=1.6e+02 Score=24.12 Aligned_cols=44 Identities=16% Similarity=0.302 Sum_probs=31.0
Q ss_pred EEEEEEeccEEEEECCEEEEEccccccCC----CCCHHHHHHHHHHHH
Q psy2899 58 EKCIFVSGGIIDIQPDSVIVLADTAIHGS----DLVEKQIEKEKILLE 101 (139)
Q Consensus 58 ~~~~~v~gG~~~v~~~~v~Ila~~a~~~~----~iD~~~a~~~~~~a~ 101 (139)
...+...||-+++++....|.++.+.... .++.+++++.+.+..
T Consensus 132 ~~~lvlEGG~i~~dG~Gtli~Te~~ll~~nRNp~~s~~eie~~L~~~l 179 (329)
T PF04371_consen 132 KSPLVLEGGNIESDGEGTLITTESCLLNPNRNPGLSKAEIEAELKRYL 179 (329)
T ss_dssp EEEEE--GGGEEEESSSEEEEEHHHHTSTTTSTTS-HHHHHHHHHHHH
T ss_pred cCCeEEecCcEEECCCceEEEEeeeEecCccCccCCHHHHHHHHHHHh
Confidence 34589999999999999999999988433 366677776666554
No 72
>PF03870 RNA_pol_Rpb8: RNA polymerase Rpb8; InterPro: IPR005570 Rpb8 is a subunit common to the three yeast RNA polymerases, pol I, II and III. Rpb8 interacts with the largest subunit Rpb1, and with Rpb3 and Rpb11, two smaller subunits.; GO: 0006351 transcription, DNA-dependent; PDB: 1TWH_H 1R9T_H 1I3Q_H 2B8K_H 1TWA_H 2NVY_H 4A3E_H 1Y77_H 3GTK_H 2E2J_H ....
Probab=23.02 E-value=64 Score=23.44 Aligned_cols=44 Identities=18% Similarity=0.145 Sum_probs=31.1
Q ss_pred CEEEEEecCeeeeecCceeEEEEecCceeeeecCCCcceeeeecCe
Q psy2899 1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPG 46 (139)
Q Consensus 1 ~~l~IvtP~~~~f~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G 46 (139)
|+|+=+-|+|..|+. |.++.+.+.++++.+.-+=-.-+-++..|
T Consensus 4 F~V~~vD~dGkkfdr--VSRi~~~S~~~~m~l~LDiNtelyPl~~~ 47 (138)
T PF03870_consen 4 FTVTDVDPDGKKFDR--VSRIFAKSESFDMELTLDINTELYPLKVG 47 (138)
T ss_dssp EEEEEEE---SSSSS--EEEEEEEESSSS-EEEEEEETTTSSSTSS
T ss_pred EEEEEECCCCCeecc--EEEEEEEeCCCceEEEEEccccEEccCCC
Confidence 467778899999996 99999999999988776655555556555
No 73
>PF10819 DUF2564: Protein of unknown function (DUF2564) ; InterPro: IPR020314 This entry contains proteins with no known function.
Probab=22.81 E-value=2.3e+02 Score=18.61 Aligned_cols=44 Identities=11% Similarity=-0.020 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHHHHhcCC---CchhHHHHHHHHHHHHHHHHHHHH
Q psy2899 89 VEKQIEKEKILLENILYNKK---SNIDYSITKAKLAIIIAQLKTIQY 132 (139)
Q Consensus 89 D~~~a~~~~~~a~~~l~~~~---~~~~~~~a~~~l~ra~~rl~~~~~ 132 (139)
|..+++-+++.|++....+. +...+..|...++-|+.+|.-.+.
T Consensus 4 d~kQve~aVetAqkmvG~AT~smdp~~Le~A~qAve~Ar~ql~~a~~ 50 (79)
T PF10819_consen 4 DLKQVEMAVETAQKMVGQATMSMDPDQLEHATQAVEDAREQLSQAKS 50 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666555432 344455566666666666655544
No 74
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=22.23 E-value=1.7e+02 Score=23.67 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy2899 113 YSITKAKLAIIIAQLKTIQYL 133 (139)
Q Consensus 113 ~~~a~~~l~ra~~rl~~~~~~ 133 (139)
+.+-..+|+|+.-||+.+...
T Consensus 199 Iekkk~ELER~qKRL~sLq~v 219 (267)
T PF10234_consen 199 IEKKKQELERNQKRLQSLQSV 219 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 455677888999998888764
No 75
>PF10153 DUF2361: Uncharacterised conserved protein (DUF2361); InterPro: IPR019310 This entry represents the rRNA-processing protein EFG1 family. EFG1 is involved in rRNA processing.
Probab=22.16 E-value=2.8e+02 Score=19.39 Aligned_cols=43 Identities=16% Similarity=0.196 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHH
Q psy2899 90 EKQIEKEKILLENILYNKKSNIDYSITKAKLAIIIAQLKTIQY 132 (139)
Q Consensus 90 ~~~a~~~~~~a~~~l~~~~~~~~~~~a~~~l~ra~~rl~~~~~ 132 (139)
-..|...+.+++..+....++.+...++.+|..+..-|.=+-.
T Consensus 61 RkKa~R~lkql~k~l~~~~~~~~~~~l~~~l~~~~~DL~Yv~~ 103 (114)
T PF10153_consen 61 RKKATRKLKQLEKKLEEAEDKKEIKELEKELHKLEVDLNYVIY 103 (114)
T ss_pred HHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777766666777777777777666654443
No 76
>COG1943 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=22.15 E-value=53 Score=23.42 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=14.8
Q ss_pred eeeecCCCcceeeeecCe
Q psy2899 29 DLGVYPLHSPLITCIKPG 46 (139)
Q Consensus 29 ~~gIL~~H~p~it~L~~G 46 (139)
++.|+|||.-++-.+.|.
T Consensus 52 a~~v~pdHVHlli~~pp~ 69 (136)
T COG1943 52 AMEVMPDHVHLLITLPPK 69 (136)
T ss_pred EEEecCCEEEEEEecCCC
Confidence 467899999999888774
No 77
>TIGR01337 apcB allophycocyanin, beta subunit. The alpha and beta subunits of allophycocyanin form heterodimers, six of which associate into larger aggregates as part of the phycobilisome, a light-harvesting complex of phycobiliproteins and linker proteins. This model describes allophycocyanin beta subunit. Other, homologous phyobiliproteins include allophycocyanin alpha chain and the phycocyanin and phycoerythrin alpha and beta chains.
Probab=21.75 E-value=1.6e+02 Score=21.90 Aligned_cols=43 Identities=5% Similarity=-0.151 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2899 94 EKEKILLENILYNKKSNIDYSITKAKLAIIIAQLKTIQYLRFKK 137 (139)
Q Consensus 94 ~~~~~~a~~~l~~~~~~~~~~~a~~~l~ra~~rl~~~~~~~~~~ 137 (139)
.+.+..|...-. --++.|+...+.-+..+..||++++.++.+.
T Consensus 5 t~~i~~AD~~gR-Yls~~eL~~l~~~~~~~~~Rl~aa~~l~~na 47 (167)
T TIGR01337 5 TNIINAYDLTGK-YLDDNAVTKLKGYFQTGELRLRAAAIINANS 47 (167)
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 345555554432 2367888889999999999999999887653
No 78
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=21.43 E-value=1.8e+02 Score=19.42 Aligned_cols=39 Identities=13% Similarity=0.151 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy2899 93 IEKEKILLENILYNKKSNIDYSITKAKLAIIIAQLKTIQYL 133 (139)
Q Consensus 93 a~~~~~~a~~~l~~~~~~~~~~~a~~~l~ra~~rl~~~~~~ 133 (139)
+.....++....+..+. +...|+.+-.||..||.....+
T Consensus 36 L~~kvdql~~dv~~a~a--aa~aAk~EA~RAN~RiDN~~~~ 74 (85)
T PRK09973 36 LNAKIARLEQDMKALRP--QIYAAKSEANRANTRLDAQDYF 74 (85)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhhHHHH
Confidence 33333444444443332 2334566667888998877654
No 79
>PF13351 DUF4099: Protein of unknown function (DUF4099)
Probab=21.06 E-value=1.9e+02 Score=18.88 Aligned_cols=33 Identities=12% Similarity=0.138 Sum_probs=20.9
Q ss_pred EEEEEecCeeeeecCceeEEEEecCceeeeecCC
Q psy2899 2 RIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPL 35 (139)
Q Consensus 2 ~l~IvtP~~~~f~~~~v~~V~~~t~~G~~gIL~~ 35 (139)
.+++.++.+..+.. ++.-=-.++.+|...+..+
T Consensus 40 ~i~~~~~~~~~~~~-~arlsl~~~~dG~v~l~i~ 72 (85)
T PF13351_consen 40 PISVNFGGGKTIET-DARLSLVRDEDGNVDLMIH 72 (85)
T ss_pred EEEEecCCceEEec-ceEEEEEECCCCCEEEEEe
Confidence 56666666655566 6666666677777666543
No 80
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=20.77 E-value=2e+02 Score=24.00 Aligned_cols=20 Identities=10% Similarity=-0.026 Sum_probs=14.2
Q ss_pred CCHHHHHHHHHHHHHHHhcC
Q psy2899 88 LVEKQIEKEKILLENILYNK 107 (139)
Q Consensus 88 iD~~~a~~~~~~a~~~l~~~ 107 (139)
||....+.++++|+..|..+
T Consensus 84 iD~~~y~~al~qAea~la~a 103 (352)
T COG1566 84 IDPRDYRAALEQAEAALAAA 103 (352)
T ss_pred ECcHHHHHHHHHHHHHHHHH
Confidence 67777777777777666543
No 81
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.45 E-value=2.1e+02 Score=25.01 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=30.2
Q ss_pred ecCCCcceeeeecCeEEEEEECCCCeEEEEEEeccEEEEECCEEEEEc
Q psy2899 32 VYPLHSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPDSVIVLA 79 (139)
Q Consensus 32 IL~~H~p~it~L~~G~i~i~~~~~~~~~~~~v~gG~~~v~~~~v~Ila 79 (139)
+.|||..-+++=... .+. ..+-.|.+..||+.+++.+.+=.-
T Consensus 232 iFPHHENEiAQsea~-----~g~-~~~a~yWmH~G~l~i~geKMSKSL 273 (464)
T COG0215 232 IFPHHENEIAQSEAA-----TGV-KPFAKYWMHNGFLNIDGEKMSKSL 273 (464)
T ss_pred cCCCcccHHHHHHhh-----hCC-CcceeEeEEcceeeecCcCccccc
Confidence 689999998875431 111 356789999999999997765333
No 82
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=20.14 E-value=2.3e+02 Score=17.45 Aligned_cols=14 Identities=36% Similarity=0.318 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHhc
Q psy2899 93 IEKEKILLENILYN 106 (139)
Q Consensus 93 a~~~~~~a~~~l~~ 106 (139)
++++++..|++|..
T Consensus 30 iEqRLa~LE~rL~~ 43 (60)
T PF11471_consen 30 IEQRLAALEQRLQA 43 (60)
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666666653
No 83
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=20.06 E-value=3.5e+02 Score=21.78 Aligned_cols=44 Identities=14% Similarity=-0.012 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHHHHHHHHH
Q psy2899 89 VEKQIEKEKILLENILYNKK-SNIDYSITKAKLAIIIAQLKTIQY 132 (139)
Q Consensus 89 D~~~a~~~~~~a~~~l~~~~-~~~~~~~a~~~l~ra~~rl~~~~~ 132 (139)
+.+.++..+++.+...++.- +..++.+++.++..+.+.++..+.
T Consensus 129 ~l~~a~~~~~R~~~L~~~g~vS~~~~~~a~~~~~~a~~~l~~a~~ 173 (346)
T PRK10476 129 NAKLATRTLERLEPLLAKGYVSAQQVDQARTAQRDAEVSLNQALL 173 (346)
T ss_pred HHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Done!