Query psy2899
Match_columns 139
No_of_seqs 133 out of 1234
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 20:26:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2899.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2899hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1aqt_A ATP synthase; hydrolase 100.0 3E-43 1E-47 254.5 18.8 132 1-134 4-135 (138)
2 2e5y_A ATP synthase epsilon ch 100.0 1.8E-42 6.2E-47 249.0 16.5 128 1-131 4-131 (133)
3 2rq6_A ATP synthase epsilon ch 100.0 4.8E-42 1.6E-46 248.2 13.2 129 1-132 3-134 (138)
4 2qe7_H ATP synthase subunit ep 100.0 9.7E-42 3.3E-46 245.8 -0.2 128 1-131 4-132 (135)
5 2ck3_H ATP synthase subunit de 100.0 2.1E-40 7.3E-45 241.6 0.4 130 1-131 16-146 (146)
6 2xok_H ATP synthase; hydrolase 100.0 5.1E-39 1.7E-43 237.3 7.4 127 1-130 32-159 (160)
7 2w6j_H F1-ATPase delta subunit 100.0 1.8E-39 6.2E-44 241.4 0.4 130 1-131 38-168 (168)
8 3oee_H ATP synthase subunit de 100.0 8.9E-38 3E-42 225.8 1.6 117 1-120 10-127 (138)
9 3hqx_A UPF0345 protein aciad03 90.0 2.8 9.5E-05 28.5 8.4 74 3-78 12-98 (111)
10 3eo6_A Protein of unknown func 88.9 3.4 0.00012 27.8 8.1 70 2-73 10-89 (106)
11 2oyz_A UPF0345 protein VPA0057 77.9 11 0.00037 24.7 6.8 61 10-73 6-76 (94)
12 3mr0_A Sensory box histidine k 54.9 34 0.0011 21.8 5.7 55 47-105 85-140 (142)
13 3osx_A 60 kDa chaperonin; alph 50.4 28 0.00095 25.9 5.0 49 68-122 145-193 (201)
14 3m6c_A 60 kDa chaperonin 1; ch 48.2 32 0.0011 25.4 5.0 49 68-122 138-186 (194)
15 3lnn_A Membrane fusion protein 45.2 70 0.0024 24.5 7.0 23 109-131 127-149 (359)
16 2f1m_A Acriflavine resistance 42.9 79 0.0027 23.2 6.8 22 109-130 96-117 (277)
17 3na7_A HP0958; flagellar bioge 41.1 54 0.0019 24.5 5.6 43 89-131 68-110 (256)
18 2jnk_A Hyalurononglucosaminida 34.7 87 0.003 21.7 5.3 39 90-128 34-73 (140)
19 1vf7_A Multidrug resistance pr 34.3 1.1E+02 0.0037 23.8 6.5 25 108-132 109-133 (369)
20 2b5u_A Colicin E3; high resolu 30.0 64 0.0022 27.3 4.6 12 37-48 238-249 (551)
21 2iaf_A Hypothetical protein SD 28.5 58 0.002 22.9 3.6 15 58-72 133-147 (151)
22 2f5g_A Transposase, putative; 27.1 22 0.00074 23.6 1.1 18 29-46 53-70 (133)
23 1qsd_A Protein (beta-tubulin b 26.2 1.4E+02 0.0048 19.5 5.0 37 91-127 67-103 (106)
24 3o18_A C-phycocyanin alpha sub 25.5 84 0.0029 22.1 4.0 30 108-137 19-48 (162)
25 2v4h_A NF-kappa-B essential mo 25.3 1.3E+02 0.0046 20.0 4.8 30 78-107 14-43 (110)
26 1kn1_B Allophycocyanin; helix- 25.2 85 0.0029 22.0 4.0 42 95-137 7-48 (161)
27 2vml_A Phycocyanin alpha chain 25.1 86 0.0029 22.0 4.0 30 108-137 19-48 (162)
28 3l0f_B C-phycocyanin beta chai 24.4 71 0.0024 22.8 3.5 44 93-137 5-48 (172)
29 3v57_A Phycoerythrin alpha sub 23.3 95 0.0033 21.9 4.0 42 95-137 7-48 (164)
30 2fyx_A Transposase, putative; 22.9 32 0.0011 23.3 1.3 18 29-46 63-80 (143)
31 3fpp_A Macrolide-specific effl 22.1 1.8E+02 0.0061 21.9 5.7 43 90-132 92-135 (341)
32 4dk0_A Putative MACA; alpha-ha 21.1 1.2E+02 0.0043 23.1 4.6 22 109-130 113-134 (369)
33 2vml_B Phycocyanin beta chain; 20.8 89 0.003 22.3 3.4 43 94-137 6-48 (172)
34 2c7l_B Phycoerythrocyanin beta 20.1 91 0.0031 22.2 3.3 43 94-137 6-48 (172)
No 1
>1aqt_A ATP synthase; hydrolase, ATPase, epsilon subunit; 2.30A {Escherichia coli} SCOP: a.2.10.1 b.93.1.1 PDB: 1qo1_J 1bsh_A 1bsn_A 1fs0_E 3oaa_H*
Probab=100.00 E-value=3e-43 Score=254.52 Aligned_cols=132 Identities=43% Similarity=0.688 Sum_probs=127.9
Q ss_pred CEEEEEecCeeeeecCceeEEEEecCceeeeecCCCcceeeeecCeEEEEEECCCCeEEEEEEeccEEEEECCEEEEEcc
Q psy2899 1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPDSVIVLAD 80 (139)
Q Consensus 1 ~~l~IvtP~~~~f~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~i~i~~~~~~~~~~~~v~gG~~~v~~~~v~Ila~ 80 (139)
|+|+|+||++.+|++ +|++|++||.+|+|||||||+|+++.|+||+++|+..+ |.+++|+|+|||++|.+|.|+|+++
T Consensus 4 l~l~ivtP~~~~~~~-~v~~V~~p~~~Ge~GILp~H~p~it~L~~G~v~i~~~~-g~~~~~~v~gGf~ev~~~~vtIla~ 81 (138)
T 1aqt_A 4 YHLDVVSAEQQMFSG-LVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQH-GHEEFIYLSGGILEVQPGNVTVLAD 81 (138)
T ss_dssp EEEEEEESSCEEEEE-EEEEEEEEBSSSEEEECTTCCCEEEEECSEEEEEEETT-TEEEEEEESSEEEEEETTEEEEEES
T ss_pred EEEEEEcCCceEEee-eEEEEEEECCcCCeEecCCCcceEeEecceEEEEEECC-CcEEEEEEeCcEEEEECCEEEEEEe
Confidence 689999999999999 99999999999999999999999999999999999877 8999999999999999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy2899 81 TAIHGSDLVEKQIEKEKILLENILYNKKSNIDYSITKAKLAIIIAQLKTIQYLR 134 (139)
Q Consensus 81 ~a~~~~~iD~~~a~~~~~~a~~~l~~~~~~~~~~~a~~~l~ra~~rl~~~~~~~ 134 (139)
.|+++++||.++|++++++|+++|+++.++.++.+|+++|+||.+||++.+.++
T Consensus 82 ~A~~~~diD~~~a~~a~~~Ae~~l~~~~~~~~~~~a~~al~rA~arl~~~~~~~ 135 (138)
T 1aqt_A 82 TAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIAQLRVIELTK 135 (138)
T ss_dssp SEEEGGGCCHHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEhhhCCHHHHHHHHHHHHHHHhhCcChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998899999999999999999999998755
No 2
>2e5y_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, hydrolase; HET: ATP; 1.92A {Bacillus SP} PDB: 2e5t_A 2e5u_A
Probab=100.00 E-value=1.8e-42 Score=249.03 Aligned_cols=128 Identities=24% Similarity=0.463 Sum_probs=123.9
Q ss_pred CEEEEEecCeeeeecCceeEEEEecCceeeeecCCCcceeeeecCeEEEEEECCCCeEEEEEEeccEEEEECCEEEEEcc
Q psy2899 1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPDSVIVLAD 80 (139)
Q Consensus 1 ~~l~IvtP~~~~f~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~i~i~~~~~~~~~~~~v~gG~~~v~~~~v~Ila~ 80 (139)
|+|+|+||++.+|++ +|++|++||.+|+|||||||+|+++.|+||+++|+. + |.+.+|+|+|||++|.+|.|+|+++
T Consensus 4 ~~l~ivtP~~~~~~~-~v~~V~~p~~~G~~GILp~H~p~it~L~~G~v~i~~-~-~~~~~~~v~gGf~ev~~~~vtIla~ 80 (133)
T 2e5y_A 4 IHVSVVTPDGPVYED-DVEMVSVKAKSGELGILPGHIPLVAPLEISAARLKK-G-GKTQYIAVSGGFLEVRPDKVTILAQ 80 (133)
T ss_dssp EEEEEEETTEEEEEE-EESEEEEEETTEEEEECTTCCCEEEEEEEEEEEEEE-T-TEEEEEEEEEEEEEEETTEEEEEES
T ss_pred eEEEEEcCCceEEec-eEEEEEEECCcCCeEecCCCcceEeEecceEEEEEE-C-CeEEEEEEcCeEEEEECCEEEEEEe
Confidence 689999999999999 999999999999999999999999999999999995 5 8999999999999999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH
Q psy2899 81 TAIHGSDLVEKQIEKEKILLENILYNKKSNIDYSITKAKLAIIIAQLKTIQ 131 (139)
Q Consensus 81 ~a~~~~~iD~~~a~~~~~~a~~~l~~~~~~~~~~~a~~~l~ra~~rl~~~~ 131 (139)
.|+++++||.++|++++++|+++|+++.++.++.+|+.+|+||.+||++.+
T Consensus 81 ~A~~~~diD~~~a~~a~~~Ae~~l~~~~~~~~~~~a~~al~rA~~rl~~~~ 131 (133)
T 2e5y_A 81 AAERAEDIDVLRAKAAKERAERRLQSQQDDIDFKRAELALKRAMNRLSVAE 131 (133)
T ss_dssp SEEEGGGCCHHHHHHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEhhhCCHHHHHHHHHHHHHHHhhCcChHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999998899999999999999999999874
No 3
>2rq6_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, ATP synthesis, CF1, hydrogen ION transport, hydrolase; NMR {Thermosynechococcus elongatus} PDB: 2rq7_A
Probab=100.00 E-value=4.8e-42 Score=248.22 Aligned_cols=129 Identities=20% Similarity=0.344 Sum_probs=123.7
Q ss_pred CEEEEEecCeeeeecCceeEEEEecCceeeeecCCCcceeeeecCeEEEEEECCCCeEEEEEEeccEEEEECCEEEEEcc
Q psy2899 1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPDSVIVLAD 80 (139)
Q Consensus 1 ~~l~IvtP~~~~f~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~i~i~~~~~~~~~~~~v~gG~~~v~~~~v~Ila~ 80 (139)
|+|+|+||++.+|++ +|++|++||.+|+|||||||+|+++.|+||+++|+. + |.+.+|+|+|||++|.+|.|+|+++
T Consensus 3 l~l~ivtP~~~~~~~-~v~~V~~p~~~Ge~GILp~H~p~it~L~~G~v~i~~-~-~~~~~~~v~gGf~ev~~~~vtIla~ 79 (138)
T 2rq6_A 3 MTVRVIAPDKTVWDA-PAEEVILPSTTGQLGILSNHAPLLTALETGVMRVRQ-D-REWVAIALMGGFAEVENNEVTILVN 79 (138)
T ss_dssp EEEEEECSSSEEEEE-EESEEEECCTTSCEEEESSCCSEEEEECSEEEEEES-S-SCEEEEEECSEEEEECSSCEEEEES
T ss_pred eEEEEEcCCceEEee-eEEEEEEECCcCCeEEcCCCcceEeEeccEEEEEEE-C-CeEEEEEEcCcEEEEECCEEEEEEe
Confidence 689999999999999 999999999999999999999999999999999987 5 7899999999999999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHhcCC---CchhHHHHHHHHHHHHHHHHHHHH
Q psy2899 81 TAIHGSDLVEKQIEKEKILLENILYNKK---SNIDYSITKAKLAIIIAQLKTIQY 132 (139)
Q Consensus 81 ~a~~~~~iD~~~a~~~~~~a~~~l~~~~---~~~~~~~a~~~l~ra~~rl~~~~~ 132 (139)
.|+++++||.++|++++++|+++|+++. ++.++.+|+.+|+||.+||++...
T Consensus 80 ~A~~~~dID~~~a~~a~~~Ae~~l~~~~~~~~~~~~~~a~~aL~rA~arl~~~~~ 134 (138)
T 2rq6_A 80 GAERGDTIDLEKAKAEFAAAQAALAQAEQGESKQAKIQATQAFRRARARLQAAGG 134 (138)
T ss_dssp CEECSTTCCHHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTTT
T ss_pred eEEEhhhCCHHHHHHHHHHHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999876 789999999999999999998753
No 4
>2qe7_H ATP synthase subunit epsilon; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP}
Probab=100.00 E-value=9.7e-42 Score=245.79 Aligned_cols=128 Identities=34% Similarity=0.473 Sum_probs=122.4
Q ss_pred CEEEEEecCeeeeecCceeEEEEecCceeeeecCCCcceeeeecCeEEEEEECCCCeEEEEEEeccEEEEECCEEEEEcc
Q psy2899 1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPDSVIVLAD 80 (139)
Q Consensus 1 ~~l~IvtP~~~~f~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~i~i~~~~~~~~~~~~v~gG~~~v~~~~v~Ila~ 80 (139)
|+|+|+||++.+|++ +|++|++||.+|+|||||||+|+++.|+||+++|+.+ +.+++|+|+|||++|.+|.|+|+++
T Consensus 4 ~~l~ivtP~~~~~~~-~v~~V~~p~~~Ge~GILp~H~p~it~L~~G~v~i~~~--~~~~~~~v~gGf~ev~~~~vtIla~ 80 (135)
T 2qe7_H 4 VQVDIVTPERKVFQG-EADIVIARGVEGELGVMAGHIPLVTPLKTAPVRIKQG--DKETLIAVSGGFLEVRPDKVNILAD 80 (135)
T ss_dssp CEEEEBCSSCBCCCS-CCSCEEECBSSSCEEECSCCCCCCCCBCSSCCCBCTT--SCCBCCBCCSCCEEECSSEEEECCS
T ss_pred eEEEEEcCCceEEec-eEEEEEEECCcCCeEecCCCcceEeEecceEEEEEEC--CeEEEEEEcCcEEEEECCEEEEEEe
Confidence 689999999999999 9999999999999999999999999999999999864 5678999999999999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHHHHHHHHHH
Q psy2899 81 TAIHGSDLVEKQIEKEKILLENILYNK-KSNIDYSITKAKLAIIIAQLKTIQ 131 (139)
Q Consensus 81 ~a~~~~~iD~~~a~~~~~~a~~~l~~~-~~~~~~~~a~~~l~ra~~rl~~~~ 131 (139)
.|+++++||.++|++++++|+++|+++ .++.++.+|+.+|+||.+||++.+
T Consensus 81 ~A~~~~diD~~~a~~a~~~Ae~~l~~~~~~~~~~~~a~~al~rA~~rl~~~~ 132 (135)
T 2qe7_H 81 TAELPEEIDVERAKKAKARHETILKRLDKTDKDYLRHKRALERAEVRLQVAN 132 (135)
T ss_dssp SCBCTTTSCHHHHHHHHHTTTTTTTTCCSSSSSTTTSTTTHHHHTHHHHTTS
T ss_pred eeEEhhhCCHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999988 888999999999999999999863
No 5
>2ck3_H ATP synthase subunit delta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.2.10.1 b.93.1.1 PDB: 1e79_H* 1h8e_H* 2jdi_H* 2v7q_H* 2wss_H* 2xnd_H*
Probab=100.00 E-value=2.1e-40 Score=241.58 Aligned_cols=130 Identities=19% Similarity=0.317 Sum_probs=81.5
Q ss_pred CEEEEEecCeeeeecCceeEEEEecCceeeeecCCCcceeeeecCeEEEEEECCCCeEEEEEEeccEEEEECC-EEEEEc
Q psy2899 1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPD-SVIVLA 79 (139)
Q Consensus 1 ~~l~IvtP~~~~f~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~i~i~~~~~~~~~~~~v~gG~~~v~~~-~v~Ila 79 (139)
|+|+|+||++.+|++.+|++|++||.+|+|||||||+|+|+.|+||+++|+..+ |.|++|+|+|||++|++| .|+|++
T Consensus 16 l~l~IvtP~~~~~~~~~v~~V~~p~~~Ge~GILp~H~P~it~L~~G~v~i~~~~-g~~~~~~v~gGf~eV~~~~~VtIla 94 (146)
T 2ck3_H 16 MSFTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAED-GTTSKYFVSSGSVTVNADSSVQLLA 94 (146)
T ss_dssp -CCCEECSSCEEEC-----CCBCCC-----------------CCSBCCBC-----------CBCSBC---------CEEB
T ss_pred EEEEEEcCCeeEEcCCcEEEEEEECCccCeeccCCCcceEeEecceEEEEEECC-CcEEEEEEeCCEEEEeCCCEEEEEe
Confidence 679999999999995369999999999999999999999999999999998766 889999999999999877 999999
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH
Q psy2899 80 DTAIHGSDLVEKQIEKEKILLENILYNKKSNIDYSITKAKLAIIIAQLKTIQ 131 (139)
Q Consensus 80 ~~a~~~~~iD~~~a~~~~~~a~~~l~~~~~~~~~~~a~~~l~ra~~rl~~~~ 131 (139)
+.|+++++||.+++++++++|+++|.+..++.++.+|+..|+++.+|+++++
T Consensus 95 ~~A~~~~dID~~~A~~a~~~Ae~~l~~~~~~~~~~~A~~~l~~~~a~~~a~~ 146 (146)
T 2ck3_H 95 EEAVTLDMLDLGAAKANLEKAQSELLGAADEATRAEIQIRIEANEALVKALE 146 (146)
T ss_dssp SSBCCSSSCCCSSHHHHHHHHHHHHSSCCCSSSSHHHHHHHHHHHC------
T ss_pred ceeEehhhCCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999998899999999999999999998763
No 6
>2xok_H ATP synthase; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-39 Score=237.28 Aligned_cols=127 Identities=18% Similarity=0.320 Sum_probs=113.3
Q ss_pred CEEEEEecCeeeeecCceeEEEEecCceeeeecCCCcceeeeecCeEEEEEECCCCeEEEEEEeccEEEEECC-EEEEEc
Q psy2899 1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPD-SVIVLA 79 (139)
Q Consensus 1 ~~l~IvtP~~~~f~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~i~i~~~~~~~~~~~~v~gG~~~v~~~-~v~Ila 79 (139)
|+|+|+||++.+|++.+|++|++||.+|+|||||||+|+++.|+||+++|+. + |.+++|+|+|||++|++| .|+|++
T Consensus 32 l~l~IVtPe~~~~~~~~v~~V~~p~~~Ge~GILp~H~Plit~L~~G~v~i~~-~-g~~~~~aV~gGf~eV~~~n~VtIla 109 (160)
T 2xok_H 32 LKLQFALPHETLYSGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVME-G-SNSKKFFISGGFATVQPDSQLCVTA 109 (160)
T ss_dssp --CCCBCSSCBCCC--CCSEEEEECSSSEEEEESSCCCCEEEECSSCEEECS-S-SCCEEECCCCEEEEECTTSCEEEEE
T ss_pred EEEEEEcCCeeEEcCCcEEEEEEECCccCeEecCCCccceeEecceEEEEEE-C-CEEEEEEEcCeEEEEeCCCeEEEEe
Confidence 6899999999999953699999999999999999999999999999999987 6 889999999999999987 999999
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHH
Q psy2899 80 DTAIHGSDLVEKQIEKEKILLENILYNKKSNIDYSITKAKLAIIIAQLKTI 130 (139)
Q Consensus 80 ~~a~~~~~iD~~~a~~~~~~a~~~l~~~~~~~~~~~a~~~l~ra~~rl~~~ 130 (139)
+.|+++++||.++|++++++|+++|+++ ++.++.+|+.+|+++.+.++++
T Consensus 110 ~~A~~~~dID~~~A~~a~~~Ae~~l~~~-~~~d~~~A~~~L~~a~~l~~al 159 (160)
T 2xok_H 110 IEAFPLESFSQENIKNLLAEAKKNVSSS-DAREAAEAAIQVEVLENLQSVL 159 (160)
T ss_dssp SCC-CCTTTC-CHHHHHHHHHHHHHHTC---CTTHHHHHHHHHHHHHHCC-
T ss_pred eeeEehhhCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999988 8899999999999998877654
No 7
>2w6j_H F1-ATPase delta subunit; ATP phosphorylase (H+ transporting), transit peptide, F1FO ATP synthase, ATP phosphorylase; 3.84A {Bos taurus} PDB: 2w6h_H 2w6i_H
Probab=100.00 E-value=1.8e-39 Score=241.40 Aligned_cols=130 Identities=18% Similarity=0.307 Sum_probs=81.5
Q ss_pred CEEEEEecCeeeeecCceeEEEEecCceeeeecCCCcceeeeecCeEEEEEECCCCeEEEEEEeccEEEEEC-CEEEEEc
Q psy2899 1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQP-DSVIVLA 79 (139)
Q Consensus 1 ~~l~IvtP~~~~f~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~i~i~~~~~~~~~~~~v~gG~~~v~~-~~v~Ila 79 (139)
|+|+|+||++.+|++.+|++|++||.+|+|||||||+|+|+.|+||+++|+..+ |+|+.|+|+|||++|++ |.|+|++
T Consensus 38 ~~l~IVtPe~~~~~~~~V~~V~~p~~~Ge~GILp~H~Plit~L~~G~v~i~~~~-g~~~~~~V~gGf~eV~~~n~VtIla 116 (168)
T 2w6j_H 38 MSFTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAED-GTTSKYFVSSGSVTVNADSSVQLLA 116 (168)
T ss_dssp -CCCEECSSCEEEC-----CCBCCC-----------------CCSBCCBC-----------CBCSBC---------CEEB
T ss_pred EEEEEEcCCeeEEcCCcEEEEEEeCCccCccccCCCcceEeEecceEEEEEECC-CcEEEEEEeCCeEEEecCCeEEEEe
Confidence 679999999999995379999999999999999999999999999999998766 88999999999999997 4999999
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH
Q psy2899 80 DTAIHGSDLVEKQIEKEKILLENILYNKKSNIDYSITKAKLAIIIAQLKTIQ 131 (139)
Q Consensus 80 ~~a~~~~~iD~~~a~~~~~~a~~~l~~~~~~~~~~~a~~~l~ra~~rl~~~~ 131 (139)
+.|+++++||.+++++++++|+++|++..++.++.+++.+|+++.+|+++++
T Consensus 117 ~~A~~~~dID~~~A~~a~~~Ae~~l~~~~~~~~~~~A~~~l~~~~a~~~a~~ 168 (168)
T 2w6j_H 117 EEAVTLDMLDLGAAKANLEKAQSELLGAADEATRAEIQIRIEANEALVKALE 168 (168)
T ss_dssp SSBCCSSSCCCSSHHHHHHHHHHHHSSCCCSSSSHHHHHHHHHHHC------
T ss_pred cccCccccCCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999998899999999999999999998764
No 8
>3oee_H ATP synthase subunit delta; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} PDB: 2wpd_H* 3fks_H 2hld_H* 3oeh_H* 3ofn_H* 3zry_H* 3oe7_H* 4b2q_H*
Probab=100.00 E-value=8.9e-38 Score=225.82 Aligned_cols=117 Identities=20% Similarity=0.348 Sum_probs=101.7
Q ss_pred CEEEEEecCeeeeecCceeEEEEecCceeeeecCCCcceeeeecCeEEEEEECCCCeEEEEEEeccEEEEECC-EEEEEc
Q psy2899 1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPD-SVIVLA 79 (139)
Q Consensus 1 ~~l~IvtP~~~~f~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~i~i~~~~~~~~~~~~v~gG~~~v~~~-~v~Ila 79 (139)
|+|+|+||++.+|++.+|++|++||.+|+|||||||+|+|+.|+||+++|+ .+ |.+++|+|+|||++|.+| .|+|++
T Consensus 10 l~l~IvtP~~~~~~~~~v~~V~~p~~~Ge~GILp~H~P~it~L~~G~v~i~-~~-g~~~~~~V~gGf~eV~~~~~v~Ila 87 (138)
T 3oee_H 10 LKLQFALPHETLYSGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVM-EG-SNSKKFFISGGFATVQPDSQLCVTA 87 (138)
T ss_dssp -CEEEECSSCBCCC--CCSCEECCCSSSCCEECTTCCCCEEEECSEEEEEC-SS-SCCEEEEECCEEEEECTTSCEEEEC
T ss_pred EEEEEEcCCeeEEcCCcEEEEEEECCcCCeEecCCCcceEeEecceEEEEE-EC-CeEEEEEEcCeEEEEeCCCEEEEEe
Confidence 689999999999996479999999999999999999999999999999998 56 889999999999999997 899999
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q psy2899 80 DTAIHGSDLVEKQIEKEKILLENILYNKKSNIDYSITKAKL 120 (139)
Q Consensus 80 ~~a~~~~~iD~~~a~~~~~~a~~~l~~~~~~~~~~~a~~~l 120 (139)
+.|+++++||.++|++++++|+++|++ .++.++.+|+++|
T Consensus 88 ~~A~~~~eiD~~~A~~a~e~Ae~~l~~-~~~~~~a~A~~~l 127 (138)
T 3oee_H 88 IEAFPLESFSQENIKNLLAEAKKNVSS-SDAREAAEAAIQV 127 (138)
T ss_dssp SCC-CCSSCC-CCSSSSTTHHHHHTSC-SSSSGGGTTTHHH
T ss_pred ccccchhhCCHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHH
Confidence 999999999999999999999999986 3455544444444
No 9
>3hqx_A UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MCSG, structural genomics, protein STRU initiative, midwest center for structural genomics; 1.66A {Acinetobacter SP} SCOP: b.82.1.0
Probab=90.03 E-value=2.8 Score=28.46 Aligned_cols=74 Identities=20% Similarity=0.228 Sum_probs=56.0
Q ss_pred EEEEecCeeeeecCceeEEEEecCce---eeeec-CCC--------cceeeeecCeEEEEEECCCCeEEEEEEeccEEEE
Q psy2899 3 IDIVSIEGLLFSNKNIEFIVLPGELG---DLGVY-PLH--------SPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDI 70 (139)
Q Consensus 3 l~IvtP~~~~f~~~~v~~V~~~t~~G---~~gIL-~~H--------~p~it~L~~G~i~i~~~~~~~~~~~~v~gG~~~v 70 (139)
+.|+.---+.|+| .|.|..+-..+| .+||| |+- +|-+..+..|.++++.+++.+|+.|. .|-..+|
T Consensus 12 Vtv~kkaNvYFdG-kV~S~~~~~~dG~~kTlGVm~PGe~~YtF~T~~~E~MevvsG~l~V~Lpg~~eW~~~~-aGesF~V 89 (111)
T 3hqx_A 12 VTVIKKSNVYFGG-LCISHTVQFEDGTKKTLGVILPTEQPLTFETHVPERMEIISGECRVKIADSTESELFR-AGQSFYV 89 (111)
T ss_dssp CEECSSCEEETTT-TEEEEEEECTTSCEEEEEEECCCSSCEEEECSSCEEEEEEESEEEEEETTCSSCEEEE-TTCEEEE
T ss_pred EEEEEEeEEEeCC-eEEEEEEEeCCCCEEEEEEEeccccceEEcCCCcEEEEEEEeEEEEEcCCcccCEEeC-CCCEEEE
Confidence 4556666789999 999999999998 46764 665 68888999999999997645666544 7778888
Q ss_pred ECC-EEEEE
Q psy2899 71 QPD-SVIVL 78 (139)
Q Consensus 71 ~~~-~v~Il 78 (139)
-.| .-.|-
T Consensus 90 panssF~lk 98 (111)
T 3hqx_A 90 PGNSLFKIE 98 (111)
T ss_dssp CTTCEEEEE
T ss_pred CCCCcEEEE
Confidence 777 33443
No 10
>3eo6_A Protein of unknown function (DUF1255); AFE_2634, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 0.97A {Acidithiobacillus ferrooxidans ATCC23270}
Probab=88.92 E-value=3.4 Score=27.80 Aligned_cols=70 Identities=7% Similarity=-0.004 Sum_probs=53.5
Q ss_pred EEEEEecCeeeeecCceeEEEEecCcee---eeecC-------CCcceeeeecCeEEEEEECCCCeEEEEEEeccEEEEE
Q psy2899 2 RIDIVSIEGLLFSNKNIEFIVLPGELGD---LGVYP-------LHSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQ 71 (139)
Q Consensus 2 ~l~IvtP~~~~f~~~~v~~V~~~t~~G~---~gIL~-------~H~p~it~L~~G~i~i~~~~~~~~~~~~v~gG~~~v~ 71 (139)
.+.|+.---++|+| .|.|..+-..+|. +|||. =+.|-+..+..|.++++.+++..|+.|. .|-.+.|-
T Consensus 10 ~vtv~kkaNvYFDG-kV~S~~~~~~dG~~kTlGVm~PGeY~F~T~~~E~MevvsG~l~V~LpG~~eW~~~~-aGesF~Vp 87 (106)
T 3eo6_A 10 ATALGKSSRISLDG-RRSERSVILADGSMHSLTLLHPGVYTLSSEVAETIRVLSGMAYYHAEGANDVQELH-AGDSMVIP 87 (106)
T ss_dssp EEEEESCCEEETTT-TEEEEEEEETTSCEEEEEEECSEEEEECCSSCEEEEEEEEEEEEECTTCSSCEEEE-TTCEEEEC
T ss_pred ceEEEEEeeEEeCC-eEEEEEEEeCCCCeEEEEEEeeeEEEecCCCcEEEEEEEeEEEEECCCCccCEEEC-CCCEEEEC
Confidence 35677777889999 9999999988874 67653 3677788888999999887645666544 77777777
Q ss_pred CC
Q psy2899 72 PD 73 (139)
Q Consensus 72 ~~ 73 (139)
.|
T Consensus 88 an 89 (106)
T 3eo6_A 88 AN 89 (106)
T ss_dssp SS
T ss_pred CC
Confidence 77
No 11
>2oyz_A UPF0345 protein VPA0057; unknown function, structural genomi 2, protein structure initiative, midwest center for structu genomics, MCSG; 1.71A {Vibrio parahaemolyticus} SCOP: b.82.1.22
Probab=77.88 E-value=11 Score=24.72 Aligned_cols=61 Identities=16% Similarity=0.245 Sum_probs=43.4
Q ss_pred eeeeecCceeEEEEecCcee---eeecC-C------CcceeeeecCeEEEEEECCCCeEEEEEEeccEEEEECC
Q psy2899 10 GLLFSNKNIEFIVLPGELGD---LGVYP-L------HSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPD 73 (139)
Q Consensus 10 ~~~f~~~~v~~V~~~t~~G~---~gIL~-~------H~p~it~L~~G~i~i~~~~~~~~~~~~v~gG~~~v~~~ 73 (139)
-+.|+| .|.|..+-.. |. +|||. + ++|-+..+..|.++++.+++.+|+.|. .|-.+.|-.|
T Consensus 6 NvYFdG-kv~S~~~~~~-G~~~TvGVm~pGeytF~T~~~E~M~vvsG~~~V~lpg~~ew~~~~-aGesF~Vpan 76 (94)
T 2oyz_A 6 NSYFAG-GVKSLGFNQH-GQDVSVGVMLPGEYTFGTQAPERMTVVKGALVVKRVGEADWTTYS-SGESFDVEGN 76 (94)
T ss_dssp EEEGGG-TEEEEEEEET-TEEEEEEEECSEEEEEEESSCEEEEEEESEEEEEETTCSSCEEEE-TTCEEEECSS
T ss_pred eEEeCC-eEEEEEEEeC-CCCEEEEEEeceEEEEcCCCeEEEEEEEeEEEEEcCCCCcCEEEC-CCCEEEECCC
Confidence 368999 8999998777 54 56653 3 677777888888888887634555444 6667777766
No 12
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=54.89 E-value=34 Score=21.81 Aligned_cols=55 Identities=13% Similarity=0.024 Sum_probs=26.7
Q ss_pred EEEEEECCCCeEEEEEEeccEEEEECCEEEEEccccccCCCC-CHHHHHHHHHHHHHHHh
Q psy2899 47 FIRIKISKKIEEKCIFVSGGIIDIQPDSVIVLADTAIHGSDL-VEKQIEKEKILLENILY 105 (139)
Q Consensus 47 ~i~i~~~~~~~~~~~~v~gG~~~v~~~~v~Ila~~a~~~~~i-D~~~a~~~~~~a~~~l~ 105 (139)
..++...+ |.++.+.+.|-.+.-.++.+.-++-.+. || +..++++++.++++++.
T Consensus 85 e~r~~~~~-G~~~w~~~~~~~~~d~~g~~~~~~G~~~---DITerk~~E~~L~~~~~~l~ 140 (142)
T 3mr0_A 85 EYRVRTRS-GDFRWIQSRGQALWNSAGEPYRMVGWIM---DVTDRKRDEDALRVSREELR 140 (142)
T ss_dssp EEEEECTT-SCEEEEEEEEEEEECTTSCEEEEEEEEE---ECHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCC-CCEEEEEEEEEEEECCCCCEEEEEEEEE---cCchHHHHHHHHHHHHHHHh
Confidence 45666666 8877776655444322333332222221 22 23455555555555543
No 13
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A
Probab=50.35 E-value=28 Score=25.87 Aligned_cols=49 Identities=14% Similarity=0.169 Sum_probs=35.7
Q ss_pred EEEECCEEEEEccccccCCCCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q psy2899 68 IDIQPDSVIVLADTAIHGSDLVEKQIEKEKILLENILYNKKSNIDYSITKAKLAI 122 (139)
Q Consensus 68 ~~v~~~~v~Ila~~a~~~~~iD~~~a~~~~~~a~~~l~~~~~~~~~~~a~~~l~r 122 (139)
+.|+++..+|+... =|.+.++.+.++.++++++..++.|+++.|-+|.+
T Consensus 145 V~vtkd~TtIv~G~------G~~~~I~~Rv~qIr~qie~t~S~ydkEKLqERLAK 193 (201)
T 3osx_A 145 VVINKDTTTIIDGV------GEEGAIAARVTQIRQQIEESTSDYDREKLQERVAK 193 (201)
T ss_dssp EEECSSCEEEEEEC------CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred EEEcCCceEEecCC------CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 44566766666332 25788899999999999998888888777766543
No 14
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis}
Probab=48.15 E-value=32 Score=25.41 Aligned_cols=49 Identities=12% Similarity=0.154 Sum_probs=35.7
Q ss_pred EEEECCEEEEEccccccCCCCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q psy2899 68 IDIQPDSVIVLADTAIHGSDLVEKQIEKEKILLENILYNKKSNIDYSITKAKLAI 122 (139)
Q Consensus 68 ~~v~~~~v~Ila~~a~~~~~iD~~~a~~~~~~a~~~l~~~~~~~~~~~a~~~l~r 122 (139)
+.++++..+|+... =|.+.++.+.++.++.+++..++.|+++.|-+|.+
T Consensus 138 v~vtkd~T~iv~G~------g~~~~I~~Rv~qIr~~ie~t~s~ydkEKLqERlAk 186 (194)
T 3m6c_A 138 VVVSKDDTVIVDGG------GTAEAVANRAKHLRAEIDKSDSDWDREKLGERLAK 186 (194)
T ss_dssp EEECSSCEEEEEEC------CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred EEEcCCceEEecCC------CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 45566766666332 25788899999999999998888888777766543
No 15
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=45.16 E-value=70 Score=24.48 Aligned_cols=23 Identities=4% Similarity=0.141 Sum_probs=14.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHH
Q psy2899 109 SNIDYSITKAKLAIIIAQLKTIQ 131 (139)
Q Consensus 109 ~~~~~~~a~~~l~ra~~rl~~~~ 131 (139)
+..++..++.++..+.+.++.++
T Consensus 127 s~~~~~~a~~~~~~a~a~l~~a~ 149 (359)
T 3lnn_A 127 AKRDFEQAQSDYDQAASESQRAD 149 (359)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777666665554
No 16
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=42.89 E-value=79 Score=23.20 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=13.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHH
Q psy2899 109 SNIDYSITKAKLAIIIAQLKTI 130 (139)
Q Consensus 109 ~~~~~~~a~~~l~ra~~rl~~~ 130 (139)
+..++..++.++..+.++++.+
T Consensus 96 s~~~~~~a~~~~~~a~a~l~~a 117 (277)
T 2f1m_A 96 SKQEYDQALADAQQANAAVTAA 117 (277)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666544
No 17
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=41.05 E-value=54 Score=24.51 Aligned_cols=43 Identities=7% Similarity=0.012 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH
Q psy2899 89 VEKQIEKEKILLENILYNKKSNIDYSITKAKLAIIIAQLKTIQ 131 (139)
Q Consensus 89 D~~~a~~~~~~a~~~l~~~~~~~~~~~a~~~l~ra~~rl~~~~ 131 (139)
|.+.++..+.+.++++.+.++..+|...+.++.-+..++..++
T Consensus 68 ~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE 110 (256)
T 3na7_A 68 TLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQAN 110 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777788888887788888888888877776665554
No 18
>2jnk_A Hyalurononglucosaminidase; calcium-binding, hydrolase; NMR {Clostridium perfringens} PDB: 2ozn_B
Probab=34.66 E-value=87 Score=21.70 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHHHHH
Q psy2899 90 EKQIEKEKILLENILYNKK-SNIDYSITKAKLAIIIAQLK 128 (139)
Q Consensus 90 ~~~a~~~~~~a~~~l~~~~-~~~~~~~a~~~l~ra~~rl~ 128 (139)
....++++..|+..+.+.. +..+...|...|..|...|+
T Consensus 34 ~~~f~~Al~~A~aV~~n~nAtQeeVd~A~~~L~~Ai~~L~ 73 (140)
T 2jnk_A 34 KDGLTVEINKAEEVFNKEDATEEEINLAKESLEGAIARFN 73 (140)
T ss_dssp HHHHHHHHHHHHHHHTCSSTTTTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHhh
Confidence 5678899999999987654 57778899999999998875
No 19
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=34.29 E-value=1.1e+02 Score=23.77 Aligned_cols=25 Identities=16% Similarity=0.096 Sum_probs=19.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHH
Q psy2899 108 KSNIDYSITKAKLAIIIAQLKTIQY 132 (139)
Q Consensus 108 ~~~~~~~~a~~~l~ra~~rl~~~~~ 132 (139)
-+..++..++.++..|.++|+.++.
T Consensus 109 is~~~~~~a~~~~~~a~a~l~~a~~ 133 (369)
T 1vf7_A 109 VSKQQYADANAAYLQSKAAVEQARI 133 (369)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888899999998888877654
No 20
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=29.96 E-value=64 Score=27.32 Aligned_cols=12 Identities=25% Similarity=0.753 Sum_probs=6.6
Q ss_pred cceeeeecCeEE
Q psy2899 37 SPLITCIKPGFI 48 (139)
Q Consensus 37 ~p~it~L~~G~i 48 (139)
+|...++.|++.
T Consensus 238 ~Pa~q~~pp~v~ 249 (551)
T 2b5u_A 238 TPAVQTLSPGVT 249 (551)
T ss_dssp CCCCCSCCTTEE
T ss_pred CccccCCCCCcc
Confidence 455555666544
No 21
>2iaf_A Hypothetical protein SDHL; MCSG, PSI2, MAD, structural genomics, L-serine dehydratase, structure initiative; 2.05A {Legionella pneumophila} SCOP: d.81.2.1 PDB: 2iqq_A
Probab=28.46 E-value=58 Score=22.86 Aligned_cols=15 Identities=20% Similarity=0.408 Sum_probs=12.0
Q ss_pred EEEEEEeccEEEEEC
Q psy2899 58 EKCIFVSGGIIDIQP 72 (139)
Q Consensus 58 ~~~~~v~gG~~~v~~ 72 (139)
+.+|-|.|||+....
T Consensus 133 ~~~ySIGGGfI~~~~ 147 (151)
T 2iaf_A 133 QVYYSIGGGFITTEE 147 (151)
T ss_dssp EEEEECSSSCEEETT
T ss_pred EEEEEeCCceEEECC
Confidence 578899999998743
No 22
>2f5g_A Transposase, putative; dimer, stem-loop binding, gene regulation; 1.70A {Sulfolobus solfataricus} SCOP: d.58.57.1 PDB: 2f4f_A 2ec2_A
Probab=27.06 E-value=22 Score=23.57 Aligned_cols=18 Identities=33% Similarity=0.388 Sum_probs=15.3
Q ss_pred eeeecCCCcceeeeecCe
Q psy2899 29 DLGVYPLHSPLITCIKPG 46 (139)
Q Consensus 29 ~~gIL~~H~p~it~L~~G 46 (139)
.+.+||||.-++..+.|+
T Consensus 53 a~~impdHvHllv~~~~~ 70 (133)
T 2f5g_A 53 ALEVMPDHIHLFVNCPPR 70 (133)
T ss_dssp EEEEETTEEEEEEECCTT
T ss_pred eeeecCCcEEEEEEecCC
Confidence 578999999999988775
No 23
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=26.24 E-value=1.4e+02 Score=19.54 Aligned_cols=37 Identities=22% Similarity=0.160 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHH
Q psy2899 91 KQIEKEKILLENILYNKKSNIDYSITKAKLAIIIAQL 127 (139)
Q Consensus 91 ~~a~~~~~~a~~~l~~~~~~~~~~~a~~~l~ra~~rl 127 (139)
.+.+.++...++-|....+..++..|+..|..+..-+
T Consensus 67 ~Rl~~a~~~L~~~l~~~~~~ee~~~Ake~l~~a~~~~ 103 (106)
T 1qsd_A 67 EKIREFKEDLEQFLKTYQGTEDVSDARSAITSAQELL 103 (106)
T ss_dssp HHHHHHHHHHHHHHHTCCSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhh
Confidence 3455556666666665666778888888887776544
No 24
>3o18_A C-phycocyanin alpha subunit; phycobilisome, photosynthesis, light harvesting, cyanobacter; HET: CYC; 1.35A {Thermosynechococcus vulcanus} SCOP: a.1.1.3 PDB: 1i7y_A* 1on7_A* 1ktp_A* 3o2c_A* 3l0f_A* 1jbo_A* 3kvs_A* 3brp_A* 1phn_A* 2bv8_A* 1f99_A* 1gh0_A* 2uum_A* 1ha7_A* 1cpc_A* 2uul_C* 2uul_A* 2uun_A*
Probab=25.47 E-value=84 Score=22.14 Aligned_cols=30 Identities=13% Similarity=0.195 Sum_probs=26.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2899 108 KSNIDYSITKAKLAIIIAQLKTIQYLRFKK 137 (139)
Q Consensus 108 ~~~~~~~~a~~~l~ra~~rl~~~~~~~~~~ 137 (139)
-++.|+...+.-+.++..||++++.++.+.
T Consensus 19 ls~~EL~~l~~~~~~~~~Rl~aa~~l~~na 48 (162)
T 3o18_A 19 LSNTELQAVDGRFKRAVASMEAARALTNNA 48 (162)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred CCHHHHHHHHHHHhchHHHHHHHHHHHHhH
Confidence 478899999999999999999999987653
No 25
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=25.32 E-value=1.3e+02 Score=20.00 Aligned_cols=30 Identities=17% Similarity=0.176 Sum_probs=25.0
Q ss_pred EccccccCCCCCHHHHHHHHHHHHHHHhcC
Q psy2899 78 LADTAIHGSDLVEKQIEKEKILLENILYNK 107 (139)
Q Consensus 78 la~~a~~~~~iD~~~a~~~~~~a~~~l~~~ 107 (139)
++..++..+...++.....+..|++.|...
T Consensus 14 ~~~~~~~~~~~ei~~L~~~L~~AEeaL~~K 43 (110)
T 2v4h_A 14 LVPRGSHMASMQLEDLRQQLQQAEEALVAK 43 (110)
T ss_dssp CCCTTCCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 566788888888899999999999988864
No 26
>1kn1_B Allophycocyanin; helix-turn-helix, electron transport; HET: CYC; 2.20A {Porphyra yezoensis} SCOP: a.1.1.3 PDB: 1all_B* 3dbj_B* 2v8a_B* 1b33_B* 2vjt_B*
Probab=25.24 E-value=85 Score=22.03 Aligned_cols=42 Identities=2% Similarity=-0.204 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2899 95 KEKILLENILYNKKSNIDYSITKAKLAIIIAQLKTIQYLRFKK 137 (139)
Q Consensus 95 ~~~~~a~~~l~~~~~~~~~~~a~~~l~ra~~rl~~~~~~~~~~ 137 (139)
+.+..|..+- .--++.|+...+..+.++..||++++.++.+.
T Consensus 7 ~~i~~AD~~g-Ryls~~eL~~l~~~~~~~~~Rl~aa~~l~~na 48 (161)
T 1kn1_B 7 SVINSSDVQG-KYLDSSAIEKLKGYFQTGELRVRAATTIAANA 48 (161)
T ss_dssp HHHHHHHTTT-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHhcC-CCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4444444321 23478899999999999999999999987653
No 27
>2vml_A Phycocyanin alpha chain; photosynthesis, light-harvesting, electron transport, transp chromophore, bIle pigment, phycobilisome; HET: CYC; 2.40A {Gloeobacter violaceus} PDB: 2vjr_A*
Probab=25.05 E-value=86 Score=22.03 Aligned_cols=30 Identities=10% Similarity=0.155 Sum_probs=26.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2899 108 KSNIDYSITKAKLAIIIAQLKTIQYLRFKK 137 (139)
Q Consensus 108 ~~~~~~~~a~~~l~ra~~rl~~~~~~~~~~ 137 (139)
-++.|+...+..+.++..||++++.++.+.
T Consensus 19 ls~~eL~~l~~~~~~~~~Rl~aa~~l~~na 48 (162)
T 2vml_A 19 LNNTELQAANGRFQRATASMEAARALTSNA 48 (162)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred CCHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 478899999999999999999999987653
No 28
>3l0f_B C-phycocyanin beta chain; photosynthesis, photosystem II, light harvesting proteins, thermostability, bIle pigment; HET: CYC; 1.35A {Thermosynechococcus elongatus} SCOP: a.1.1.3 PDB: 1i7y_B* 1ktp_B* 1on7_B* 1jbo_B* 3o18_B* 3o2c_B* 1phn_B* 3kvs_B* 3brp_B* 1gh0_B* 1cpc_B* 1ha7_B* 2bv8_B* 2uul_D* 2uum_X* 1f99_B* 2uum_B* 2uul_B* 2uun_B* 2uul_H* ...
Probab=24.41 E-value=71 Score=22.80 Aligned_cols=44 Identities=7% Similarity=-0.066 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2899 93 IEKEKILLENILYNKKSNIDYSITKAKLAIIIAQLKTIQYLRFKK 137 (139)
Q Consensus 93 a~~~~~~a~~~l~~~~~~~~~~~a~~~l~ra~~rl~~~~~~~~~~ 137 (139)
..+.+..|..+-. --++.|+...+.-+.++..||++++.++++.
T Consensus 5 ~t~~I~~AD~~gR-yls~~EL~~l~~~~~~~~~Rl~aa~~l~~na 48 (172)
T 3l0f_B 5 FAKVVAQADARGE-FLTNAQFDALSNLVKEGNKRLDAVNRITSNA 48 (172)
T ss_dssp HHHHHHHHHHHTC-CCCHHHHHHHHHHHHTHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHhcCC-CCCHHHHHHHHHHHhhhHHHHHHHHHHHHhH
Confidence 3455566655422 3478899999999999999999999987653
No 29
>3v57_A Phycoerythrin alpha subunit; globin-like, photosynthesis; HET: PEB; 1.70A {Porphyridium purpureum} PDB: 3v58_A* 1eyx_A* 1b8d_A* 1lia_A* 2vjh_A* 3mwn_A*
Probab=23.32 E-value=95 Score=21.91 Aligned_cols=42 Identities=14% Similarity=-0.005 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2899 95 KEKILLENILYNKKSNIDYSITKAKLAIIIAQLKTIQYLRFKK 137 (139)
Q Consensus 95 ~~~~~a~~~l~~~~~~~~~~~a~~~l~ra~~rl~~~~~~~~~~ 137 (139)
+.+..|-.+-. --++.|+...+..+.++.+||++++.++++.
T Consensus 7 ~~i~~AD~~gR-yls~~eL~~l~~~~~~~~~Rl~aa~~L~~na 48 (164)
T 3v57_A 7 TVVSAADAAGR-FPSNSDLESIQGNIQRSAARLEAAEKLAGNH 48 (164)
T ss_dssp HHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHHHhHHHhHHHHHHHHHhH
Confidence 44444443322 3478888899999999999999999987653
No 30
>2fyx_A Transposase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Deinococcus radiodurans} SCOP: d.58.57.1 PDB: 2xqc_A 2xm3_A 2xma_A 2xo6_A
Probab=22.92 E-value=32 Score=23.26 Aligned_cols=18 Identities=28% Similarity=0.276 Sum_probs=15.1
Q ss_pred eeeecCCCcceeeeecCe
Q psy2899 29 DLGVYPLHSPLITCIKPG 46 (139)
Q Consensus 29 ~~gIL~~H~p~it~L~~G 46 (139)
.+.+||||.-++..+.|+
T Consensus 63 a~~vmpDHvHlLv~~~p~ 80 (143)
T 2fyx_A 63 ALEVMPDYVHLLLGATPQ 80 (143)
T ss_dssp EEEECSSEEEEEEEECTT
T ss_pred EEEecCCeEEEEEecCCC
Confidence 577899999999888775
No 31
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=22.13 E-value=1.8e+02 Score=21.88 Aligned_cols=43 Identities=19% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHHHHHHHHH
Q psy2899 90 EKQIEKEKILLENILYNKK-SNIDYSITKAKLAIIIAQLKTIQY 132 (139)
Q Consensus 90 ~~~a~~~~~~a~~~l~~~~-~~~~~~~a~~~l~ra~~rl~~~~~ 132 (139)
.+.++..+++.+...+... +..++..++.++..+.++++.++.
T Consensus 92 ~~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~~~a~l~~~~a 135 (341)
T 3fpp_A 92 LKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDA 135 (341)
T ss_dssp HHHHTHHHHHHHHHHHTSSSTTHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHH
No 32
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=21.08 E-value=1.2e+02 Score=23.06 Aligned_cols=22 Identities=23% Similarity=0.161 Sum_probs=13.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHH
Q psy2899 109 SNIDYSITKAKLAIIIAQLKTI 130 (139)
Q Consensus 109 ~~~~~~~a~~~l~ra~~rl~~~ 130 (139)
+..++..++.++..+.++++.+
T Consensus 113 s~~~~~~a~~~~~~a~a~~~~~ 134 (369)
T 4dk0_A 113 SLDTLNTAKATLNNAKAEMDVV 134 (369)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666665544
No 33
>2vml_B Phycocyanin beta chain; photosynthesis, light-harvesting, electron transport, transp chromophore, bIle pigment, phycobilisome; HET: CYC; 2.40A {Gloeobacter violaceus} PDB: 2vjr_B*
Probab=20.75 E-value=89 Score=22.25 Aligned_cols=43 Identities=7% Similarity=-0.079 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2899 94 EKEKILLENILYNKKSNIDYSITKAKLAIIIAQLKTIQYLRFKK 137 (139)
Q Consensus 94 ~~~~~~a~~~l~~~~~~~~~~~a~~~l~ra~~rl~~~~~~~~~~ 137 (139)
.+.+..|-.+ ..--++.|+...+..+.++..||++++.++.+.
T Consensus 6 t~~i~~AD~~-gRyls~~EL~~l~~~~~~~~~Rl~aa~~L~~na 48 (172)
T 2vml_B 6 TKAIVAADLR-GSFLSEQELNQLTNLVKESNKRLDAVNAITGNA 48 (172)
T ss_dssp HHHHHHHHHT-TCCCCHHHHHHHHHHHHTHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHhc-CCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHhH
Confidence 3444444332 123478899999999999999999999887653
No 34
>2c7l_B Phycoerythrocyanin beta chain; phycoviolobilin, phycocyanobilin, bIle pigment, chromophore, electron transport, photosynthesis; HET: BLA CYC; 2.85A {Mastigocladus laminosus} PDB: 2c7k_B* 2c7j_B*
Probab=20.11 E-value=91 Score=22.21 Aligned_cols=43 Identities=14% Similarity=-0.029 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2899 94 EKEKILLENILYNKKSNIDYSITKAKLAIIIAQLKTIQYLRFKK 137 (139)
Q Consensus 94 ~~~~~~a~~~l~~~~~~~~~~~a~~~l~ra~~rl~~~~~~~~~~ 137 (139)
.+.+..|..+- .--++.|+...+..+.++..||++++.++.+.
T Consensus 6 t~~i~~AD~~g-Ryls~~EL~~l~~~~~~~~~Rl~aa~~l~~na 48 (172)
T 2c7l_B 6 SRVVEQADKKG-AYLSNDEINALQAIVADSNKRLDVVNRLTSNA 48 (172)
T ss_dssp HHHHHHHHTTT-CCCCHHHHHHHHHHHHSHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHhcC-CCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34444444321 23478889999999999999999999887653
Done!