RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2899
(139 letters)
>gnl|CDD|234796 PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated.
Length = 135
Score = 132 bits (334), Expect = 8e-41
Identities = 60/134 (44%), Positives = 88/134 (65%), Gaps = 2/134 (1%)
Query: 1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKC 60
+ +DIVS EGL++S +E +V+PG G+LG+ P H+PL+T +KPG +RIK EE+
Sbjct: 4 LTVDIVSPEGLIYSG-EVEEVVVPGTEGELGILPGHAPLLTALKPGVVRIKKDDG-EEEV 61
Query: 61 IFVSGGIIDIQPDSVIVLADTAIHGSDLVEKQIEKEKILLENILYNKKSNIDYSITKAKL 120
I VSGG +++QPD V VLAD+A D+ E + E+ K E L NK ++DY+ +A L
Sbjct: 62 IAVSGGFLEVQPDKVTVLADSAERADDIDEARAEEAKERAEEALENKHDDVDYARAQAAL 121
Query: 121 AIIIAQLKTIQYLR 134
A IA+L+ + LR
Sbjct: 122 ARAIARLRVAEKLR 135
>gnl|CDD|223432 COG0355, AtpC, F0F1-type ATP synthase, epsilon subunit
(mitochondrial delta subunit) [Energy production and
conversion].
Length = 135
Score = 109 bits (275), Expect = 8e-32
Identities = 50/133 (37%), Positives = 84/133 (63%), Gaps = 1/133 (0%)
Query: 1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKC 60
++++IVS EG+++S ++ +V+P G+LG+ P H+PLIT +KPG +RIK +E+
Sbjct: 4 LKLEIVSPEGIIYS-GEVKSVVVPTTEGELGILPGHAPLITALKPGVVRIKTEDGDKEEK 62
Query: 61 IFVSGGIIDIQPDSVIVLADTAIHGSDLVEKQIEKEKILLENILYNKKSNIDYSITKAKL 120
I VSGG +++QP+ V +LAD+A D+ E + E+ K E L + K + DY +A L
Sbjct: 63 IAVSGGFLEVQPNEVTILADSAERADDIDEARAEEAKERAEKELESAKDDKDYRRAEAAL 122
Query: 121 AIIIAQLKTIQYL 133
A +A+L+ +
Sbjct: 123 ARALARLRVAELT 135
>gnl|CDD|130283 TIGR01216, ATP_synt_epsi, ATP synthase, F1 epsilon subunit (delta
in mitochondria). This model describes one of the five
types of subunits in the F1 part of F1/F0 ATP synthases.
Members of this family are designated epsilon in
bacterial and chloroplast systems but designated delta
in mitochondria, where the counterpart of the bacterial
delta subunit is designated OSCP. In a few cases
(Propionigenium modestum, Acetobacterium woodii) scoring
above the trusted cutoff and designated here as
exceptions, Na+ replaces H+ for translocation [Energy
metabolism, ATP-proton motive force interconversion].
Length = 130
Score = 106 bits (266), Expect = 2e-30
Identities = 48/131 (36%), Positives = 80/131 (61%), Gaps = 2/131 (1%)
Query: 1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKC 60
++++IV+ EG ++S +E ++LPG G+LG+ P H+PLIT +KPG +RI+ + +
Sbjct: 2 LKLEIVTPEGEIYS-GEVESVILPGSEGELGILPGHAPLITALKPGVVRIRKLGD-DWEH 59
Query: 61 IFVSGGIIDIQPDSVIVLADTAIHGSDLVEKQIEKEKILLENILYNKKSNIDYSITKAKL 120
I VSGG ++QPD V +LAD A+ D+ E + EK E +L + + + D + KL
Sbjct: 60 IAVSGGFAEVQPDKVTILADGAVFADDIDEAEAEKALEAAEKLLESAEDDKDLAEALLKL 119
Query: 121 AIIIAQLKTIQ 131
AQL+ ++
Sbjct: 120 KKARAQLEALE 130
>gnl|CDD|213395 cd12152, F1-ATPase_delta, mitochondrial ATP synthase delta subunit.
The F-ATPase is found in bacterial plasma membranes,
mitochondrial inner membranes and in chloroplast
thylakoid membranes. It has also been found in the
archaea Methanosarcina barkeri. It uses a proton
gradient to drive ATP synthesis and hydrolyzes ATP to
build the proton gradient. The extrinisic membrane
domain, F1, is composed of alpha, beta, gamma, delta,
and epsilon subunits with a stoichiometry of 3:3:1:1:1.
Alpha and beta subunit form the globular catalytic
moiety, a hexameric ring of alternating subunits. Gamma,
delta and epsilon subunits form a stalk, connecting F1
to F0, the integral membrane proton translocating
domain. In bacteria, which is lacking a eukaryotic
epsilon subunit homolog, this subunit is called the
epsilon subunit.
Length = 123
Score = 104 bits (263), Expect = 3e-30
Identities = 42/121 (34%), Positives = 70/121 (57%), Gaps = 2/121 (1%)
Query: 1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKC 60
++++IV+ E + FS + +E +VLPG G+ G+ P H+PL+T +KPG +RI+ EEK
Sbjct: 1 LKLEIVTPERVFFSGE-VESVVLPGTEGEFGILPGHAPLVTALKPGVLRIRDEDG-EEKY 58
Query: 61 IFVSGGIIDIQPDSVIVLADTAIHGSDLVEKQIEKEKILLENILYNKKSNIDYSITKAKL 120
VSGG +++ P+ V +LAD A D+ ++ E+ E L K + + +A L
Sbjct: 59 FAVSGGFLEVTPNRVTILADEAERPEDIDVERAEEALERAEERLAQAKDEREKARAEAAL 118
Query: 121 A 121
Sbjct: 119 E 119
>gnl|CDD|217242 pfam02823, ATP-synt_DE_N, ATP synthase, Delta/Epsilon chain,
beta-sandwich domain. Part of the ATP synthase CF(1).
These subunits are part of the head unit of the ATP
synthase. The subunit is called epsilon in bacteria and
delta in mitochondria. In bacteria the delta (D)
subunit is equivalent to the mitochondrial Oligomycin
sensitive subunit, OSCP (pfam00213).
Length = 80
Score = 90.9 bits (227), Expect = 3e-25
Identities = 36/82 (43%), Positives = 57/82 (69%), Gaps = 2/82 (2%)
Query: 1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKC 60
++++IV+ E ++FS +E +V PG G+ G+ P H+PL+T +KPG +RIK EE+
Sbjct: 1 LKLEIVTPERVVFS-GEVEMVVAPGTEGEFGILPGHAPLLTALKPGVLRIKTEDG-EEEK 58
Query: 61 IFVSGGIIDIQPDSVIVLADTA 82
I VSGG +++QP+ V +LAD A
Sbjct: 59 IAVSGGFLEVQPNEVTILADEA 80
>gnl|CDD|184056 PRK13446, atpC, F0F1 ATP synthase subunit epsilon; Provisional.
Length = 136
Score = 73.1 bits (180), Expect = 1e-17
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKC 60
++++IV+ E + S + ++ + PG LG+ GV P H+P +T +K G + K K
Sbjct: 5 LKLEIVTPEKKVLSEE-VDEVGAPGVLGEFGVLPGHAPFLTALKIGELTYKKGGKTH--Y 61
Query: 61 IFVSGGIIDIQPDSVIVLADTAIHGSD 87
+ V+GG ++ + V VLA+TA +
Sbjct: 62 VAVNGGFAEVSNNKVTVLAETAERAEE 88
>gnl|CDD|173197 PRK14735, atpC, F0F1 ATP synthase subunit epsilon; Provisional.
Length = 139
Score = 63.9 bits (155), Expect = 5e-14
Identities = 37/137 (27%), Positives = 76/137 (55%), Gaps = 3/137 (2%)
Query: 1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKC 60
+ ++IV+ E ++ S+ +++ I P + G +G+ P H+PL+T ++PG + I K
Sbjct: 3 IHLEIVTAERVVLSD-DVDMISAPTKDGRVGILPRHAPLLTILEPG--ELDIVKNGVRTP 59
Query: 61 IFVSGGIIDIQPDSVIVLADTAIHGSDLVEKQIEKEKILLENILYNKKSNIDYSITKAKL 120
+SGG +++ P V +LADTA ++ E + E+ + E ++S D ++ +AKL
Sbjct: 60 FAISGGFMEVLPHRVTILADTAERADEIDEARAEQARAEAEQRRRERQSEQDLALAEAKL 119
Query: 121 AIIIAQLKTIQYLRFKK 137
+ +L+ Q + ++
Sbjct: 120 RRAMVRLRVAQLHKIRR 136
>gnl|CDD|173198 PRK14736, atpC, F0F1 ATP synthase subunit epsilon; Provisional.
Length = 133
Score = 62.1 bits (151), Expect = 3e-13
Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 4 DIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFV 63
D+V E L+S + +E + LPG G++ V P H+P++T +K G I + + K I+V
Sbjct: 7 DLVGPERTLYSGE-VEAVQLPGSEGEMTVLPGHAPVLTTLKVGVITVTETTG-NGKRIYV 64
Query: 64 SGGIIDIQPDSVIVLADTAIHGSDLVEKQIEKEKILLE 101
GG +I P SV VLA+ A +L + I++E +E
Sbjct: 65 RGGFAEIGPTSVTVLAERAAPVEELTPEMIDREIEAVE 102
>gnl|CDD|184058 PRK13449, atpC, F0F1 ATP synthase subunit epsilon; Provisional.
Length = 88
Score = 56.3 bits (136), Expect = 1e-11
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 4 DIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFV 63
++V+ E LL S ++ +V+PG GD GV H+P +T ++ G + + S + V
Sbjct: 7 ELVTPERLLRS-GEVDMVVVPGTEGDFGVLAGHAPFMTTLREGEVTVYSSDGAAPEVFHV 65
Query: 64 SGGIIDIQPDSVIVLADTA 82
GG ++ + +LA+ A
Sbjct: 66 QGGFAEVNEKGLTILAEHA 84
>gnl|CDD|237388 PRK13443, atpC, F0F1 ATP synthase subunit epsilon; Provisional.
Length = 136
Score = 56.9 bits (137), Expect = 3e-11
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKC 60
++ D+VS E L S + + +PG GD+ H+P IT ++PG +R +E
Sbjct: 5 LQFDLVSPERRLASFQATA-VQIPGADGDMTAMEGHAPTITTLRPGILRAHGPSGTQE-- 61
Query: 61 IFVSGGIIDIQPDSVIVLADTAI 83
V+GG +I S+ VLA+ AI
Sbjct: 62 YAVTGGFAEINATSISVLAEKAI 84
>gnl|CDD|139579 PRK13448, atpC, F0F1 ATP synthase subunit epsilon; Provisional.
Length = 135
Score = 54.0 bits (130), Expect = 4e-10
Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 10/129 (7%)
Query: 4 DIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFV 63
D+VS E L FS + ++ + +PG GD GV H+P++ I+PG + + + ++K I V
Sbjct: 7 DLVSPEKLAFSGE-VDQVDIPGVEGDFGVLAGHAPVVAVIRPGILTV-TAGGNQQK-IVV 63
Query: 64 SGGIIDIQPDSVIVLADTAIHGSDLVEKQIEKEKILLENILYNKK-SNIDYSITKAKLAI 122
GG+ ++ + VLAD A +DL Q +E L K +D +I +
Sbjct: 64 LGGLAEVSEKGLTVLADVATSVADLDLAQFAATIAEMEAQLAGKVGDELDRAIER----- 118
Query: 123 IIAQLKTIQ 131
+ K+IQ
Sbjct: 119 -LDHFKSIQ 126
>gnl|CDD|106409 PRK13452, atpC, F0F1 ATP synthase subunit epsilon; Provisional.
Length = 145
Score = 52.1 bits (124), Expect = 3e-09
Identities = 32/131 (24%), Positives = 67/131 (51%), Gaps = 4/131 (3%)
Query: 1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKC 60
+++D+VS G +F + + + L G G++G+ H+ L++ + G + ++ K
Sbjct: 6 LKVDVVSPLGSVFKGE-ADMVSLRGSAGEMGIAYGHTELLSTLPAGVVNVR--KDQHTDV 62
Query: 61 IFVSGGIIDIQPDSVIVLADTAIHGSDLVEKQIEKEKILLENILYN-KKSNIDYSITKAK 119
++VSGGI+++ P V ++ D +L + + EK + + +L N S +D +
Sbjct: 63 LYVSGGIVEVTPTRVTIMVDDMERAENLNQAEAEKARARAKEVLKNPDASKLDIEAANKR 122
Query: 120 LAIIIAQLKTI 130
L A+LK +
Sbjct: 123 LKEADARLKAL 133
>gnl|CDD|139576 PRK13444, atpC, F0F1 ATP synthase subunit epsilon; Provisional.
Length = 127
Score = 46.4 bits (110), Expect = 2e-07
Identities = 28/101 (27%), Positives = 55/101 (54%), Gaps = 6/101 (5%)
Query: 1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKC 60
+ + ++S E +L+ + ++ +++PG G G+ P H+PL+ + G + I+ +K K
Sbjct: 6 LTVSVISPEKILYKGE-VDSLIVPGSEGFFGILPNHAPLVATLGIGLLEIRKGEK--LKR 62
Query: 61 IFVSGGIIDIQPDSVIVLADTAIHGSDLVEKQIEKEKILLE 101
I V GG +++ + + +L D HG+ + E EK LL
Sbjct: 63 ISVEGGFCEVKDNQISILTD---HGALKEDIDHEHEKKLLA 100
>gnl|CDD|184059 PRK13450, atpC, F0F1 ATP synthase subunit epsilon; Provisional.
Length = 132
Score = 46.3 bits (110), Expect = 2e-07
Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 2/112 (1%)
Query: 18 IEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPDSVIV 77
++ ++ G GD+ + P H PLIT +KP +I I + E+K IF S G++ ++ + V +
Sbjct: 20 VKEVITEGLDGDIAILPNHVPLITYLKPTITKI-IDENGEKKKIFTSSGVLKVENNEVYI 78
Query: 78 LADTAIHGSDLVEKQIEKEKILLENILYNKKSNIDYSITKAKLAIIIAQLKT 129
L D + ++ K+ E K E L KK ID + L IA++K
Sbjct: 79 LCDASEWPEEIDIKRAENAKKRAEERL-RKKDEIDVKRAELALFRAIARIKL 129
>gnl|CDD|100879 PRK01474, atpC, F0F1 ATP synthase subunit epsilon; Validated.
Length = 112
Score = 46.0 bits (109), Expect = 3e-07
Identities = 25/90 (27%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 16 KNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIF-VSGGIIDIQPDS 74
K + + +PGE G GV P H P+I +K G +++ I + + + +SGG+ ++ +
Sbjct: 19 KQAKMVTMPGEEGMFGVLPSHVPMIVSLKAGLVQVYIDDMHKSENTYLISGGVTEVTGNY 78
Query: 75 VIVLADTAIHGSDLVEKQIEKEKILLENIL 104
+ + +TAI+ ++L E +I + + L+ L
Sbjct: 79 INIATETAINVTNLSEAEIATKLLDLQKTL 108
>gnl|CDD|184055 PRK13442, atpC, F0F1 ATP synthase subunit epsilon; Provisional.
Length = 89
Score = 42.7 bits (101), Expect = 2e-06
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKC 60
+ ++IV+ + ++S + +V GD+G+ P H PL+ ++ G + + E+
Sbjct: 6 LHVNIVAADRPVWSGE-ATMVVARTTEGDIGILPGHEPLLGVLESG--TVTVVTPGGERI 62
Query: 61 IF-VSGGIIDIQPDSVIVLADTA 82
V GG I + + VLA+ A
Sbjct: 63 SAAVDGGFISFDSNKLTVLAERA 85
>gnl|CDD|214351 CHL00063, atpE, ATP synthase CF1 epsilon subunit.
Length = 134
Score = 40.6 bits (96), Expect = 3e-05
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 13 FSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQP 72
+ +E I+LP G +GV P H+P+ T + G +RI+++ + + + GG I
Sbjct: 14 VWDSEVEEIILPTNSGQIGVLPNHAPIATALDIGVLRIRLNDQW--LTMALMGGFARIGN 71
Query: 73 DSVIVLADTAIHGSDLVEKQIEKE 96
+ + +L + A GSD+ ++ ++
Sbjct: 72 NEITILVNDAEKGSDIDPQEAQQT 95
>gnl|CDD|172059 PRK13451, atpC, F0F1 ATP synthase subunit epsilon; Provisional.
Length = 101
Score = 30.1 bits (68), Expect = 0.15
Identities = 18/82 (21%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKC 60
M++ IV+ G+++ ++ +F+ G++G+ P +P+I + ++IK E
Sbjct: 1 MKVKIVTPYGIVY-DRESDFVSFRTVEGEMGILPRRAPIIAKLSVCDVKIKSGDDEYE-- 57
Query: 61 IFVSGGIIDIQPDSVIVLADTA 82
V+ G + +VI++ + A
Sbjct: 58 YKVADGFLHCDGKNVIIITEEA 79
>gnl|CDD|132210 TIGR03166, alt_F1F0_F1_eps, alternate F1F0 ATPase, F1 subunit
epsilon. A small number of taxonomically diverse
prokaryotic species have what appears to be a second
ATP synthase, in addition to the normal F1F0 ATPase in
bacteria and A1A0 ATPase in archaea. These enzymes use
ion gradients to synthesize ATP, and in principle may
run in either direction. This model represents the F1
epsilon subunit of this apparent second ATP synthase.
Length = 122
Score = 30.4 bits (69), Expect = 0.15
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 21 IVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFVS--GGIIDIQPDSVIVL 78
IV E G G+ P H + + PG I I + + +V+ GI+ + V V
Sbjct: 20 IVAETESGSFGLLPGHVDCVAALVPG---ILIYETADGGEHYVAVDQGILVKRGADVEVS 76
Query: 79 ADTAIHGSDLVE 90
A+ G++L E
Sbjct: 77 VRNAVGGTELEE 88
>gnl|CDD|181324 PRK08251, PRK08251, short chain dehydrogenase; Provisional.
Length = 248
Score = 29.5 bits (67), Expect = 0.53
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 18/64 (28%)
Query: 35 LHSPL-ITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPDSVIVLADTAIHGSDLVEKQI 93
+P+ ++ I+PG+IR +++ K + S + DT G + K I
Sbjct: 173 AKTPIKVSTIEPGYIRSEMNAKAK----------------STPFMVDTET-GVKALVKAI 215
Query: 94 EKEK 97
EKE
Sbjct: 216 EKEP 219
>gnl|CDD|215901 pfam00401, ATP-synt_DE, ATP synthase, Delta/Epsilon chain, long
alpha-helix domain. Part of the ATP synthase CF(1).
These subunits are part of the head unit of the ATP
synthase. This subunit is called epsilon in bacteria and
delta in mitochondria. In bacteria the delta (D) subunit
is equivalent to the mitochondrial Oligomycin sensitive
subunit, OSCP (pfam00213).
Length = 48
Score = 27.0 bits (61), Expect = 0.81
Identities = 11/48 (22%), Positives = 22/48 (45%)
Query: 86 SDLVEKQIEKEKILLENILYNKKSNIDYSITKAKLAIIIAQLKTIQYL 133
D+ ++ E+ K E L + + +Y +A L A+L+ + L
Sbjct: 1 EDIDLERAEEAKERAEEALAKAEGDKEYIRAEAALKRARARLRAAKLL 48
>gnl|CDD|232885 TIGR00230, sfsA, sugar fermentation stimulation protein. probable
regulatory factor involved in maltose metabolism
contains a putative DNA binding domain. Isolated as a
gene which enabled E.coli strain MK2001 to use maltose
[Energy metabolism, Sugars, Regulatory functions,
Other].
Length = 232
Score = 28.6 bits (64), Expect = 1.0
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 9/63 (14%)
Query: 70 IQPDSVIVLADTAIHGSDLVEKQIEKEKI--------LLENILYNKKSNIDYSITKAKLA 121
+Q D VL +T + + L + I KI + Y +S ID+ + ++
Sbjct: 71 VQCDGGWVLVNTQLQ-NRLFKVAIPSSKISELDGYEVRKREVKYGNRSRIDFLLGESNER 129
Query: 122 III 124
+ +
Sbjct: 130 MYV 132
>gnl|CDD|237756 PRK14559, PRK14559, putative protein serine/threonine phosphatase;
Provisional.
Length = 645
Score = 26.6 bits (59), Expect = 5.1
Identities = 12/61 (19%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 57 EEKCIFVSGGIIDIQPDSVIVLADTAIHGSDLVEKQIEKEKILLENILYNKKSNIDYSIT 116
+ I ++I+ D++++L + +DL+E + L +L + +N+D +
Sbjct: 557 DNSAIQPDIQFLEIEEDTLLLLCSDGLSDNDLLETHWQT---HLLPLL-SSSANLDQGLN 612
Query: 117 K 117
K
Sbjct: 613 K 613
>gnl|CDD|216660 pfam01717, Meth_synt_2, Cobalamin-independent synthase, Catalytic
domain. This is a family of vitamin-B12 independent
methionine synthases or
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferases, EC:2.1.1.14 from bacteria and
plants. Plants are the only higher eukaryotes that have
the required enzymes for methionine synthesis. This
enzyme catalyzes the last step in the production of
methionine by transferring a methyl group from
5-methyltetrahydrofolate to homocysteine. The aligned
region makes up the carboxy region of the approximately
750 amino acid protein except in some hypothetical
archaeal proteins present in the family, where this
region corresponds to the entire length. This domain
contains the catalytic residues of the enzyme.
Length = 324
Score = 26.2 bits (58), Expect = 6.1
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 10/46 (21%)
Query: 1 MRIDIVSIEGLLFSNKNIEFIVL------PGELGDLGVYPLHSPLI 40
+ +D+++IE F+ ++E + +G GV +HSP +
Sbjct: 232 LDVDVLTIE---FARSDMENLEALEEWGYGKGVG-FGVVDIHSPRV 273
>gnl|CDD|181856 PRK09436, thrA, bifunctional aspartokinase I/homoserine
dehydrogenase I; Provisional.
Length = 819
Score = 25.9 bits (58), Expect = 9.9
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 73 DSVIVLADTAIHGSD--LVEKQIEKEKILLENILYNKKSNIDYSITKAKLAIIIAQLKTI 130
+ ++ + + A G D E+ L + L D + KAK+ AQLK I
Sbjct: 45 NHLVAMIEKAAKGDDAYPEILDAERIFHELLDGLAAALPGFDLAQLKAKVDQEFAQLKDI 104
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.144 0.398
Gapped
Lambda K H
0.267 0.0889 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,276,588
Number of extensions: 688038
Number of successful extensions: 662
Number of sequences better than 10.0: 1
Number of HSP's gapped: 646
Number of HSP's successfully gapped: 47
Length of query: 139
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 52
Effective length of database: 7,078,804
Effective search space: 368097808
Effective search space used: 368097808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.3 bits)