RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2899
         (139 letters)



>d1aqta2 b.93.1.1 (A:2-86) Epsilon subunit of F1F0-ATP synthase
          N-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 85

 Score = 83.2 bits (206), Expect = 8e-23
 Identities = 42/85 (49%), Positives = 60/85 (70%), Gaps = 2/85 (2%)

Query: 1  MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKC 60
            +D+VS E  +FS   +E I + G  G+LG+YP H+PL+T IKPG IRI + +   E+ 
Sbjct: 3  YHLDVVSAEQQMFSGL-VEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRI-VKQHGHEEF 60

Query: 61 IFVSGGIIDIQPDSVIVLADTAIHG 85
          I++SGGI+++QP +V VLADTAI G
Sbjct: 61 IYLSGGILEVQPGNVTVLADTAIRG 85


>d2jdih2 b.93.1.1 (H:17-101) Epsilon subunit of F1F0-ATP synthase
          N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
          Length = 85

 Score = 76.0 bits (187), Expect = 7e-20
 Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 2/83 (2%)

Query: 3  IDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIF 62
              S   + F++ N+  + +P + G  G+   H P +  ++PG + +           F
Sbjct: 2  FTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDG-TTSKYF 60

Query: 63 VSGGIIDIQPDS-VIVLADTAIH 84
          VS G + +  DS V +LA+ A+ 
Sbjct: 61 VSSGSVTVNADSSVQLLAEEAVT 83


>d1aqta1 a.2.10.1 (A:87-136) Epsilon subunit of F1F0-ATP synthase
           C-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 50

 Score = 41.9 bits (99), Expect = 5e-07
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 87  DLVEKQIEKEKILLENILYNKKSNIDYSITKAKLAIIIAQLKTIQYLR 134
           DL E +  + K   E  + +   ++DY+   A+LA  IAQL+ I+  +
Sbjct: 2   DLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIAQLRVIELTK 49


>d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl
           phosphate synthase {Archaeon Archaeoglobus fulgidus
           [TaxId: 2234]}
          Length = 231

 Score = 25.1 bits (54), Expect = 3.5
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 50  IKISKKIEEKCIFVSGGIIDI-QPDSVIVLADTAIHGSDLVEKQIEKEK 97
            ++ K +++  +F  GGI    +   ++  ADT I G+ + EK I+   
Sbjct: 179 AEVKKVLDKARLFYGGGIDSREKAREMLRYADTIIVGNVIYEKGIDAFL 227


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.144    0.398 

Gapped
Lambda     K      H
   0.267   0.0717    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 528,065
Number of extensions: 25134
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 16
Length of query: 139
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 62
Effective length of database: 1,350,386
Effective search space: 83723932
Effective search space used: 83723932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.3 bits)