BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy29
         (222 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O43290|SNUT1_HUMAN U4/U6.U5 tri-snRNP-associated protein 1 OS=Homo sapiens GN=SART1
           PE=1 SV=1
          Length = 800

 Score = 79.7 bits (195), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/177 (41%), Positives = 99/177 (55%), Gaps = 29/177 (16%)

Query: 15  EGRNVEHDIKDFTEGRNVILTLKDQDILAEDASDTLVNVNMVDDERHKKNVLNRKQKVGG 74
           +G  VEH I  F EG  +ILTLKD+ +L E+  D LVNVN+VD ER +KNV  RK+K   
Sbjct: 255 QGLTVEHAIDSFREGETMILTLKDKGVLQEE-EDVLVNVNLVDKERAEKNVELRKKKP-- 311

Query: 75  KFGYSALDEDE-FDEDGNPRESQLLSKYDEEIEGTKKKSFAI------------------ 115
              Y    EDE  D+    +   +LSKYDEE+EG +  SF +                  
Sbjct: 312 --DYLPYAEDESVDDLAQQKPRSILSKYDEELEGERPHSFRLEQGGTADGLRERELEEIR 369

Query: 116 ARWTLNLKVGGSSPSQLASDYLTEDE-VKFKKPKKKVRKIRKTK----LRADDLLNM 167
           A+  L  +   +   +LAS+YLT +E V FKK K++V+KIRK +    +RADDLL +
Sbjct: 370 AKLRLQAQSLSTVGPRLASEYLTPEEMVTFKKTKRRVKKIRKKEKEVVVRADDLLPL 426


>sp|Q9Z315|SNUT1_MOUSE U4/U6.U5 tri-snRNP-associated protein 1 OS=Mus musculus GN=Sart1
           PE=2 SV=1
          Length = 806

 Score = 79.3 bits (194), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/177 (41%), Positives = 100/177 (56%), Gaps = 29/177 (16%)

Query: 15  EGRNVEHDIKDFTEGRNVILTLKDQDILAEDASDTLVNVNMVDDERHKKNVLNRKQKVGG 74
           +G  VEH I  F EG  V+LTLKD+ +L +D  D LVNVNMVD ER  KNV  RK+K   
Sbjct: 255 QGLTVEHAIDSFREGETVVLTLKDKGVL-QDGEDVLVNVNMVDKERADKNVELRKKKP-- 311

Query: 75  KFGYSALDEDE-FDEDGNPRESQLLSKYDEEIEGTKKKSFAIARWTL------------- 120
              Y    EDE  D+    +   +L+KYDEE+EG +  SF + +  +             
Sbjct: 312 --DYLPYAEDESVDDLAQQKPRSILAKYDEELEGERPHSFRLEQGGMADGLRERELEEIR 369

Query: 121 -NLKVGGSSPS----QLASDYLTEDE-VKFKKPKKKVRKIRKTK----LRADDLLNM 167
             L++   S S    +LAS+YL+ +E V FKK K++V+KIRK +    +RADDLL +
Sbjct: 370 TKLRLQAQSLSSVGPRLASEYLSPEEMVTFKKTKRRVKKIRKKEKEVIMRADDLLPL 426


>sp|Q5XIW8|SNUT1_RAT U4/U6.U5 tri-snRNP-associated protein 1 OS=Rattus norvegicus
           GN=Sart1 PE=2 SV=1
          Length = 806

 Score = 78.2 bits (191), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 76/184 (41%), Positives = 101/184 (54%), Gaps = 31/184 (16%)

Query: 15  EGRNVEHDIKDFTEGRNVILTLKDQDILAEDASDTLVNVNMVDDERHKKNVLNRKQKVGG 74
           +G  VEH I  F EG  V+LTLKD+ +L E   D LVNVNMVD ER  KNV  RK+K   
Sbjct: 255 QGLTVEHAIDSFREGETVVLTLKDKGVLQE-GEDVLVNVNMVDKERADKNVELRKKKP-- 311

Query: 75  KFGYSALDEDE-FDEDGNPRESQLLSKYDEEIEGTKKKSFAI----------------AR 117
              Y    EDE  D+    +   +L+KYDEE+EG +  SF +                 R
Sbjct: 312 --DYLPYAEDESVDDLAQQKPRSILAKYDEELEGERPHSFRLEQGGMADGLRERELEEIR 369

Query: 118 WTLNLKVGG--SSPSQLASDYLTEDE-VKFKKPKKKVRKIRKTK----LRADDLLNMDSG 170
             L L+     +   +LAS+YL+ +E V FKK K++V+KIRK +    +RADDLL +  G
Sbjct: 370 TKLRLQAQSLNTVGPRLASEYLSPEEMVTFKKTKRRVKKIRKKEKEVIMRADDLLPL--G 427

Query: 171 ADQS 174
            DQ+
Sbjct: 428 EDQT 431


>sp|O94538|SNU66_SCHPO U4/U6.U5 tri-snRNP-associated protein snu66 OS=Schizosaccharomyces
           pombe (strain 972 / ATCC 24843) GN=snu66 PE=1 SV=1
          Length = 649

 Score = 40.8 bits (94), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 15  EGRNVEHDIKDFTEGRNVILTLKDQDILAEDASDTLVNVNMVDDERHKKN 64
           EG  + H  +D  +   ++LTLKD DIL ED  D L NV MV  +R  KN
Sbjct: 160 EGMKIAHGFQDLNKNDGLVLTLKDADILDEDNHDLLENVEMV--QRKTKN 207


>sp|Q15596|NCOA2_HUMAN Nuclear receptor coactivator 2 OS=Homo sapiens GN=NCOA2 PE=1 SV=2
          Length = 1464

 Score = 30.4 bits (67), Expect = 9.2,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 21/119 (17%)

Query: 120 LNLKVGGSSPSQLASDYLTEDEVKFKK----PKKKVRKIRKTKLRADD------------ 163
           L  +  G   SQ +S      EV  K+    PKKK   + +  L  DD            
Sbjct: 706 LTAEATGKDLSQESSSTAPGSEVTIKQEPVSPKKKENALLRYLLDKDDTKDIGLPEITPK 765

Query: 164 LLNMDSGADQSSEMMKREVKSEPESPYRRSGSARVKDEPEDDDDRMELDVDDMEGSQNP 222
           L  +DS  D +S      +K+E E      G     D+P  + D +E  +DD++ SQ P
Sbjct: 766 LERLDSKTDPASNTKLIAMKTEKEEMSFEPG-----DQPGSELDNLEEILDDLQNSQLP 819


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.308    0.130    0.353 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,287,780
Number of Sequences: 539616
Number of extensions: 3886177
Number of successful extensions: 12806
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 242
Number of HSP's that attempted gapping in prelim test: 12428
Number of HSP's gapped (non-prelim): 562
length of query: 222
length of database: 191,569,459
effective HSP length: 113
effective length of query: 109
effective length of database: 130,592,851
effective search space: 14234620759
effective search space used: 14234620759
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 59 (27.3 bits)