Query psy29
Match_columns 222
No_of_seqs 137 out of 182
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 20:27:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy29.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/29hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dtp_E RLC, myosin regulatory 11.3 1.1E+02 0.0039 23.3 2.0 11 145-155 6-16 (196)
2 1b65_A DMPA, protein (aminopep 10.5 71 0.0024 29.5 0.6 25 12-36 30-65 (375)
3 3axg_A Endotype 6-aminohexanoa 7.0 1.4E+02 0.0047 27.5 1.0 24 12-35 53-77 (355)
4 1e8o_B SRP14, signal recogniti 6.8 1.1E+02 0.0038 23.2 0.2 11 143-153 92-102 (106)
5 3n2w_A Beta-peptidyl aminopept 6.2 1.3E+02 0.0045 27.7 0.4 23 13-35 23-57 (373)
6 2drh_A PH0078 protein, 361AA l 5.4 1.8E+02 0.006 26.7 0.7 25 12-36 22-58 (361)
7 3ukx_C Bimax2 peptide; arm rep 5.0 3.9E+02 0.013 15.8 1.9 7 178-184 1-7 (28)
8 2yvc_D Neprilysin; protein-pep 4.5 2.4E+02 0.008 16.7 0.6 14 137-150 7-20 (26)
9 3ro2_B Peptide of nuclear mito 4.5 2.9E+02 0.01 16.5 1.0 12 198-209 9-20 (28)
10 3s3u_A Cysteine transferase; a 4.4 2.2E+02 0.0075 26.6 0.7 24 13-36 57-83 (419)
No 1
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=11.32 E-value=1.1e+02 Score=23.33 Aligned_cols=11 Identities=55% Similarity=0.528 Sum_probs=6.2
Q ss_pred cCCCcccchhh
Q psy29 145 KKPKKKVRKIR 155 (222)
Q Consensus 145 KKpKKKkkk~R 155 (222)
||++|+|+|..
T Consensus 6 ~~~~~~k~~~~ 16 (196)
T 3dtp_E 6 KKEKKKKSKKK 16 (196)
T ss_dssp HHHTTSHHHHS
T ss_pred cccccccchhh
Confidence 56666654433
No 2
>1b65_A DMPA, protein (aminopeptidase); hydrolase, peptide degradation, NTN hydrolase; 1.82A {Ochrobactrum anthropi} SCOP: d.154.1.1
Probab=10.47 E-value=71 Score=29.52 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=18.4
Q ss_pred cCCCCceeeeccc-----------ccCCCCcEEEEe
Q psy29 12 DFTEGRNVEHDIK-----------DFTEGRNVILTL 36 (222)
Q Consensus 12 d~L~GlkV~H~~~-----------~f~eG~~vILTL 36 (222)
-|.+||+|+|... ....|=++||.=
T Consensus 30 TDV~GV~VGh~t~~~g~~~~~~~~~~~TGvTvIlp~ 65 (375)
T 1b65_A 30 TDVDGVGVGFQTIIENEPRPGRKRPARSGVTAILPH 65 (375)
T ss_dssp GGSTTCEEEEEEEECSSCCTTCSSCCEEEEEEEETT
T ss_pred ccCCCceEEeeECcCCCccccccCCCCcceEEEEeC
Confidence 3589999999987 455666777653
No 3
>3axg_A Endotype 6-aminohexanoat-oligomer hydrolase; nylon oligomer; 2.00A {Agromyces}
Probab=7.03 E-value=1.4e+02 Score=27.46 Aligned_cols=24 Identities=17% Similarity=-0.003 Sum_probs=17.6
Q ss_pred cCCCCceeeecccc-cCCCCcEEEE
Q psy29 12 DFTEGRNVEHDIKD-FTEGRNVILT 35 (222)
Q Consensus 12 d~L~GlkV~H~~~~-f~eG~~vILT 35 (222)
-|..||+|+|..+. ...|=++||.
T Consensus 53 TDV~GV~VGh~td~~~~TGvTvIlp 77 (355)
T 3axg_A 53 FDFPGVSIGAAHYEEGPTGATVIHI 77 (355)
T ss_dssp CCCTTCEEEEEEETTTTEEEEEEEE
T ss_pred ccCCCceEeeeecCCCCceEEEEEc
Confidence 45899999999754 3446677775
No 4
>1e8o_B SRP14, signal recognition particle 14 kDa protein; ALU ribonucleoprotein particle, protein recognition of AN RNA U-turn, translational control; HET: GDP; 3.20A {Homo sapiens} SCOP: d.49.1.1 PDB: 1e8s_B 1ry1_D*
Probab=6.77 E-value=1.1e+02 Score=23.17 Aligned_cols=11 Identities=36% Similarity=0.422 Sum_probs=1.7
Q ss_pred cccCCCcccch
Q psy29 143 KFKKPKKKVRK 153 (222)
Q Consensus 143 kFKKpKKKkkk 153 (222)
..||++||++|
T Consensus 92 gLKkrdkkkkk 102 (106)
T 1e8o_B 92 GLKKRDKKNKT 102 (106)
T ss_dssp CCC--------
T ss_pred ccCcccccccc
Confidence 45666555443
No 5
>3n2w_A Beta-peptidyl aminopeptidase; NTN hydrolase, alpha-beta-BETA-alpha sandwich, beta-aminopep beta-peptide, hydrolase; HET: GOL; 1.45A {Sphingosinicella xenopeptidilytica} SCOP: d.154.1.0 PDB: 3n33_A* 3ndv_A* 3nfb_A* 3n5i_A
Probab=6.21 E-value=1.3e+02 Score=27.66 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=17.6
Q ss_pred CCCCceeeecccc------------cCCCCcEEEE
Q psy29 13 FTEGRNVEHDIKD------------FTEGRNVILT 35 (222)
Q Consensus 13 ~L~GlkV~H~~~~------------f~eG~~vILT 35 (222)
|.+||+|+|.... ...|=++||-
T Consensus 23 DV~GV~VGh~t~~~g~~~~~~g~g~~~TGvTvIlp 57 (373)
T 3n2w_A 23 DVAGVEVGHTTVISGDGAMVIGKGPYRTGVTIIHP 57 (373)
T ss_dssp GSTTCEEEEEEEEECCBSCCTTSCCEEEEEEEEET
T ss_pred cCCCCEEeeeEccCCCcccccCCCCCCcceEEEec
Confidence 5899999998764 4556677776
No 6
>2drh_A PH0078 protein, 361AA long hypothetical D-aminopeptidase; structural genomics, NPPSFA; 2.10A {Pyrococcus horikoshii}
Probab=5.36 E-value=1.8e+02 Score=26.74 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=17.5
Q ss_pred cCCCCceeeecc--c-c---------cCCCCcEEEEe
Q psy29 12 DFTEGRNVEHDI--K-D---------FTEGRNVILTL 36 (222)
Q Consensus 12 d~L~GlkV~H~~--~-~---------f~eG~~vILTL 36 (222)
-|.+||+|+|.. + . ...|=++||.=
T Consensus 22 TDV~GV~VGh~t~~~~~~~~~~~~~~~~TGvTvIlp~ 58 (361)
T 2drh_A 22 TDVKGVKVGHVTLIKGKGKLIPGKGPVRTGVTAILPH 58 (361)
T ss_dssp GGSTTCEEEEEEEEECCSSCBTTTBCEEEEEEEEESS
T ss_pred ccCCCceEeeeEccCCCccccccCCCCCceeEEEEeC
Confidence 349999999987 2 2 45566777653
No 7
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=5.05 E-value=3.9e+02 Score=15.85 Aligned_cols=7 Identities=14% Similarity=0.107 Sum_probs=0.8
Q ss_pred ccccccC
Q psy29 178 MKREVKS 184 (222)
Q Consensus 178 GsR~~~~ 184 (222)
|||++++
T Consensus 1 gsrrrrr 7 (28)
T 3ukx_C 1 GSRRRRR 7 (28)
T ss_dssp -----CC
T ss_pred CchhHHH
Confidence 4555444
No 8
>2yvc_D Neprilysin; protein-peptide complex, cell adhesion; 3.20A {Mus musculus}
Probab=4.55 E-value=2.4e+02 Score=16.66 Aligned_cols=14 Identities=36% Similarity=0.577 Sum_probs=8.7
Q ss_pred CCcccccccCCCcc
Q psy29 137 LTEDEVKFKKPKKK 150 (222)
Q Consensus 137 ~t~eEmkFKKpKKK 150 (222)
++..+|.--|||||
T Consensus 7 mditdinapkpkkk 20 (26)
T 2yvc_D 7 MDITDINAPKPKKK 20 (26)
T ss_pred cccccccCCCcchh
Confidence 34566666677766
No 9
>3ro2_B Peptide of nuclear mitotic apparatus protein 1; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Homo sapiens}
Probab=4.49 E-value=2.9e+02 Score=16.54 Aligned_cols=12 Identities=50% Similarity=0.653 Sum_probs=8.5
Q ss_pred ccCCCCCCCCCc
Q psy29 198 VKDEPEDDDDRM 209 (222)
Q Consensus 198 ~~~~~~~~~~~~ 209 (222)
..||||+.||--
T Consensus 9 cqdepeqlddw~ 20 (28)
T 3ro2_B 9 CQDEPEQLDDWN 20 (28)
T ss_dssp CCCCCCCCCCTT
T ss_pred ccCCcccchhHH
Confidence 458888887643
No 10
>3s3u_A Cysteine transferase; autoproteolytic, carbapenem, biosynthesis, DOM-fold, amidohy transferase; 1.60A {Streptomyces cattleya} PDB: 3tm1_A 3tm2_A*
Probab=4.45 E-value=2.2e+02 Score=26.64 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=17.7
Q ss_pred CCCCceeeeccc---ccCCCCcEEEEe
Q psy29 13 FTEGRNVEHDIK---DFTEGRNVILTL 36 (222)
Q Consensus 13 ~L~GlkV~H~~~---~f~eG~~vILTL 36 (222)
|..||+|+|.-. ....|=+|||.=
T Consensus 57 DV~Gi~VGha~~~~~~~~TG~TVIl~~ 83 (419)
T 3s3u_A 57 DVPGVRVGHAGRTGDGWLTGVTVVLAP 83 (419)
T ss_dssp GSTTCEEEEEEEEETTEEEEEEEEECC
T ss_pred cCCCcEEeeeeccCCCCCcceEEEEeC
Confidence 489999999974 245676777763
Done!