Query psy29
Match_columns 222
No_of_seqs 137 out of 182
Neff 4.1
Searched_HMMs 13730
Date Fri Aug 16 20:27:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy29.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/29hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1o7za_ d.9.1.1 (A:) IP-10/CXC 8.3 65 0.0047 20.7 1.3 10 30-39 31-40 (61)
2 d1b65a_ d.154.1.1 (A:) L-amino 4.9 99 0.0072 26.2 0.9 23 12-34 22-55 (367)
3 d1ixma_ d.123.1.1 (A:) Sporula 4.6 1.5E+02 0.011 19.4 1.6 22 24-45 126-147 (179)
4 d1pyya2 d.11.1.1 (A:693-750) P 3.9 2.1E+02 0.015 17.2 1.7 13 26-38 46-58 (58)
5 d2vzsa2 b.1.4.1 (A:778-899) Ex 3.7 2.4E+02 0.018 19.9 2.2 37 3-39 10-49 (122)
6 d3cx5e1 b.33.1.1 (E:87-215) IS 3.4 3E+02 0.022 19.4 2.5 31 12-42 1-31 (129)
7 d1mg4a_ d.15.11.1 (A:) Doublec 2.9 2.7E+02 0.02 18.7 1.7 21 14-34 58-78 (101)
8 d1gjia1 b.1.18.1 (A:182-281) p 2.8 3.6E+02 0.026 18.5 2.3 29 13-42 3-31 (100)
9 d1em8a_ c.128.1.1 (A:) DNA pol 2.6 4.9E+02 0.036 18.0 3.0 24 29-54 77-100 (147)
10 d1js1x2 c.78.1.1 (X:164-324) T 2.6 2E+02 0.015 20.8 0.7 29 14-42 51-79 (161)
No 1
>d1o7za_ d.9.1.1 (A:) IP-10/CXCL10 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.31 E-value=65 Score=20.65 Aligned_cols=10 Identities=30% Similarity=0.511 Sum_probs=8.3
Q ss_pred CcEEEEeecc
Q psy29 30 RNVILTLKDQ 39 (222)
Q Consensus 30 ~~vILTLKD~ 39 (222)
-++|.|||..
T Consensus 31 ~EVIaTLK~n 40 (61)
T d1o7za_ 31 VEIIATMKKK 40 (61)
T ss_dssp CEEEEEETTT
T ss_pred cEEEEEeecC
Confidence 5899999954
No 2
>d1b65a_ d.154.1.1 (A:) L-aminopeptidase D-Ala-esterase/amidase DmpA {Ochrobactrum anthropi [TaxId: 529]}
Probab=4.92 E-value=99 Score=26.18 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=16.4
Q ss_pred cCCCCceeeeccc-----------ccCCCCcEEE
Q psy29 12 DFTEGRNVEHDIK-----------DFTEGRNVIL 34 (222)
Q Consensus 12 d~L~GlkV~H~~~-----------~f~eG~~vIL 34 (222)
-|..||+|+|... .+..|=++||
T Consensus 22 TDV~GV~VGH~T~~~g~~~~~~~~~~~TGvTvIl 55 (367)
T d1b65a_ 22 TDVDGVGVGFQTIIENEPRPGRKRPARSGVTAIL 55 (367)
T ss_dssp GGSTTCEEEEEEEECSSCCTTCSSCCEEEEEEEE
T ss_pred ecCCCceecceecccCCccccCCCCcCceEEEEE
Confidence 3589999999852 3445667777
No 3
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]}
Probab=4.60 E-value=1.5e+02 Score=19.37 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=16.6
Q ss_pred cccCCCCcEEEEeecccccccC
Q psy29 24 KDFTEGRNVILTLKDQDILAED 45 (222)
Q Consensus 24 ~~f~eG~~vILTLKD~~ILde~ 45 (222)
.-..+++.++|+..|+|+.=+.
T Consensus 126 ~~~~~~~~~~i~v~D~G~gi~~ 147 (179)
T d1ixma_ 126 QTDHPDRQLILYLDFHGAFADP 147 (179)
T ss_dssp ECCCSSSSCEEEEEEESCBSCG
T ss_pred hhcccccEEEEEEEeCCCCcCH
Confidence 3445688899999999998333
No 4
>d1pyya2 d.11.1.1 (A:693-750) Penicillin-binding protein 2x (pbp-2x), c-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=3.87 E-value=2.1e+02 Score=17.19 Aligned_cols=13 Identities=31% Similarity=0.498 Sum_probs=9.8
Q ss_pred cCCCCcEEEEeec
Q psy29 26 FTEGRNVILTLKD 38 (222)
Q Consensus 26 f~eG~~vILTLKD 38 (222)
+..|..++|||.|
T Consensus 46 v~~g~~I~l~L~~ 58 (58)
T d1pyya2 46 IKDIKKITLTLGD 58 (58)
T ss_dssp GGGCSEEEEEEEC
T ss_pred cCCCCEEEEEECC
Confidence 4568889999865
No 5
>d2vzsa2 b.1.4.1 (A:778-899) Exochitosanase CsxA, domains 2, 4 and 5 {Amycolatopsis orientalis [TaxId: 31958]}
Probab=3.68 E-value=2.4e+02 Score=19.89 Aligned_cols=37 Identities=14% Similarity=0.078 Sum_probs=28.1
Q ss_pred CCccccccccCCCCceeeecccccCC--CC-cEEEEeecc
Q psy29 3 GLKVEHDIKDFTEGRNVEHDIKDFTE--GR-NVILTLKDQ 39 (222)
Q Consensus 3 g~~~~yt~~d~L~GlkV~H~~~~f~e--G~-~vILTLKD~ 39 (222)
..++.|++=..|....|...++.+.. |. .+.+||+.+
T Consensus 10 ~~y~D~t~L~~L~~a~v~~s~~~~~~~dg~~~v~vtl~N~ 49 (122)
T d2vzsa2 10 SAFADLSGLNNLGQSAVGATANSVAGADGTTTTTVTLKNT 49 (122)
T ss_dssp EECCCCGGGGGCCCCCEEEEEEEEECTTSEEEEEEEEEEC
T ss_pred ccccchHHHhcCCCceEEEEEEEEecCCCcEEEEEEEEcC
Confidence 45678888888999999888876653 33 577888886
No 6
>d3cx5e1 b.33.1.1 (E:87-215) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.41 E-value=3e+02 Score=19.38 Aligned_cols=31 Identities=19% Similarity=0.389 Sum_probs=24.8
Q ss_pred cCCCCceeeecccccCCCCcEEEEeeccccc
Q psy29 12 DFTEGRNVEHDIKDFTEGRNVILTLKDQDIL 42 (222)
Q Consensus 12 d~L~GlkV~H~~~~f~eG~~vILTLKD~~IL 42 (222)
|-|||-.|.=++..+.+|+.+++.-+-+.|+
T Consensus 1 dv~A~a~veVDis~l~pG~~~~V~WrGkPVf 31 (129)
T d3cx5e1 1 DVLAMAKVEVNLAAIPLGKNVVVKWQGKPVF 31 (129)
T ss_dssp GGCCCCCEEEEGGGCCTTCEEEEEETTEEEE
T ss_pred CccccCceEEehhhCCCCCeEEEEeCCceEE
Confidence 3488999999999999999877766666654
No 7
>d1mg4a_ d.15.11.1 (A:) Doublecortin-like kinase Dclk {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.88 E-value=2.7e+02 Score=18.69 Aligned_cols=21 Identities=14% Similarity=0.341 Sum_probs=15.2
Q ss_pred CCCceeeecccccCCCCcEEE
Q psy29 14 TEGRNVEHDIKDFTEGRNVIL 34 (222)
Q Consensus 14 L~GlkV~H~~~~f~eG~~vIL 34 (222)
+.|.+.-+++++|.+|+..|-
T Consensus 58 ~~G~~~V~~l~dl~~g~~yVa 78 (101)
T d1mg4a_ 58 IDGLKKISSLDQLVEGESYVC 78 (101)
T ss_dssp TTSSCBCCSGGGCCTTCEEEE
T ss_pred CCCCeEeCCHHHhCCCCEEEE
Confidence 567665588888988876654
No 8
>d1gjia1 b.1.18.1 (A:182-281) p65 subunit of NF-kappa B (NFKB), dimerization domain {Chicken (Gallus gallus), C-rel [TaxId: 9031]}
Probab=2.81 E-value=3.6e+02 Score=18.52 Aligned_cols=29 Identities=14% Similarity=0.097 Sum_probs=20.9
Q ss_pred CCCCceeeecccccCCCCcEEEEeeccccc
Q psy29 13 FTEGRNVEHDIKDFTEGRNVILTLKDQDIL 42 (222)
Q Consensus 13 ~L~GlkV~H~~~~f~eG~~vILTLKD~~IL 42 (222)
+|.=.|+.|......-|.++|| |.++.-.
T Consensus 3 ~L~I~r~s~~s~sv~GG~Ei~L-Lc~Kv~k 31 (100)
T d1gjia1 3 ELRICRVNKNCGSVKGGDEIFI-LCDKVQK 31 (100)
T ss_dssp CCCEEEESCSEEETTCCCEEEE-EESCCCG
T ss_pred ccEEEEecCCceecCCCcEEEE-EeCcccC
Confidence 4777889999988888888765 5444333
No 9
>d1em8a_ c.128.1.1 (A:) DNA polymerase III chi subunit {Escherichia coli [TaxId: 562]}
Probab=2.62 E-value=4.9e+02 Score=17.96 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=12.7
Q ss_pred CCcEEEEeecccccccCCCCeeeccc
Q psy29 29 GRNVILTLKDQDILAEDASDTLVNVN 54 (222)
Q Consensus 29 G~~vILTLKD~~ILde~e~D~LeNv~ 54 (222)
..-|+|+.....-... .|+|.|..
T Consensus 77 ~~PI~l~~~~~~~~~~--~dvlinl~ 100 (147)
T d1em8a_ 77 GAPVEIAWPQKRSSSR--RDILISLR 100 (147)
T ss_dssp CCSEEEECTTSCCCSC--CSEEEECC
T ss_pred CCCEEecCCCCCCCcc--ceEEEECC
Confidence 3456776644433322 36777765
No 10
>d1js1x2 c.78.1.1 (X:164-324) Transcarbamylase-like protein {Bacteroides fragilis [TaxId: 817]}
Probab=2.61 E-value=2e+02 Score=20.80 Aligned_cols=29 Identities=21% Similarity=0.106 Sum_probs=23.9
Q ss_pred CCCceeeecccccCCCCcEEEEeeccccc
Q psy29 14 TEGRNVEHDIKDFTEGRNVILTLKDQDIL 42 (222)
Q Consensus 14 L~GlkV~H~~~~f~eG~~vILTLKD~~IL 42 (222)
+.++++.|+..+-..|-++|.|+.-..--
T Consensus 51 ~~~~~~~~d~~eav~~aDvI~td~w~s~~ 79 (161)
T d1js1x2 51 VGNARVEYDQMKAFEGADFIYAKNWAAYT 79 (161)
T ss_dssp HTTCEEESCHHHHHTTCSEEEECCCCCCS
T ss_pred hCCceEecCHHHHhCCCcceeeehhhhhc
Confidence 57899999999999999999996655433
Done!