RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy29
         (222 letters)



>gnl|CDD|217502 pfam03343, SART-1, SART-1 family.  SART-1 is a protein involved in
           cell cycle arrest and pre-mRNA splicing. It has been
           shown to be a component of U4/U6 x U5 tri-snRNP complex
           in human, Schizosaccharomyces pombe and Saccharomyces
           cerevisiae. SART-1 is a known tumour antigen in a range
           of cancers recognised by T cells.
          Length = 603

 Score = 91.4 bits (227), Expect = 2e-21
 Identities = 71/218 (32%), Positives = 98/218 (44%), Gaps = 34/218 (15%)

Query: 19  VEHDIKDFTEGRNVILTLKDQDIL-AEDASDTLVNVNMVDDERHKKNVLNRKQKVGGKFG 77
           V H +++F EG +VILTLKD  +L  ED  D L NV +V+ E+ KKN+  +K+K      
Sbjct: 136 VGHKVEEFEEGEDVILTLKDTGVLEDEDEGDELENVELVEKEKDKKNLELKKKK------ 189

Query: 78  YSALDEDEFDEDGNPRESQLLSKYDEEIEGTKKKSFAIARWT------------------ 119
                + + D+D    +  +LSKYDEEIEG KKKS  +                      
Sbjct: 190 ----PDYDPDDDDKFNKRSILSKYDEEIEGKKKKSDNLFTLDSGGSTDDEAEKKRQEVKK 245

Query: 120 ----LNLKVGGSSPSQLASDYLTEDE-VKFKKPKKKVRKIRKTKLRADDLLNMDSGADQS 174
                N+ +   S    ASDY    E VKFKKPKKK +K +K +   D+           
Sbjct: 246 KLKINNVSLDDDSTETPASDYYDVSEMVKFKKPKKKKKKKKKRRKDLDEDELEPEAEGLG 305

Query: 175 SEMMKREVKSEPESPYRRSGSARVKDEPEDDDDRMELD 212
           S         E E+        + K+E EDDD   + D
Sbjct: 306 SSDSGSRKDVEEENARLEDSPKKRKEEQEDDDFVEDDD 343


>gnl|CDD|215521 PLN02967, PLN02967, kinase.
          Length = 581

 Score = 30.8 bits (69), Expect = 0.65
 Identities = 37/159 (23%), Positives = 59/159 (37%), Gaps = 26/159 (16%)

Query: 62  KKNVLNRKQKVGGKFGYSALDEDEFDEDGNPRESQLLSKYDEEIEGTKKKSFAIARWTLN 121
           +      + K     G     E     D  P E+  +SK        KK + ++ R T  
Sbjct: 32  RGERWRLQNKFLLAAGSRKKIESALAVDEEPDENGAVSK--------KKPTRSVKRATKK 83

Query: 122 LKVGGSSPSQLASDYLTE-DEVKFKKPKKKVRKIRKTKLRADDLLNMDSGADQSSEMMKR 180
             V  S P +  S+ +   D    K+ KK  R+ R+              A  SS++   
Sbjct: 84  TVVEISEPLEEGSELVVNEDAALDKESKKTPRRTRR------------KAAAASSDVE-- 129

Query: 181 EVKSEPESPYRRSGSARVKDEPEDDDDRMELDVDDMEGS 219
           E K+E +   RR      K + + +D   E +V D+E S
Sbjct: 130 EEKTEKKVRKRR---KVKKMDEDVEDQGSESEVSDVEES 165


>gnl|CDD|236624 PRK09782, PRK09782, bacteriophage N4 receptor, outer membrane
           subunit; Provisional.
          Length = 987

 Score = 30.3 bits (68), Expect = 0.99
 Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 13/67 (19%)

Query: 168 DSG-ADQSSEMMKREVKSEPESPYRRSGSARVKDEPED------------DDDRMELDVD 214
           DSG   QS EM++R  K  P+ P      A V    +D            DD   +  + 
Sbjct: 655 DSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALIT 714

Query: 215 DMEGSQN 221
            +   QN
Sbjct: 715 PLTPEQN 721


>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
           Provisional.
          Length = 482

 Score = 28.3 bits (64), Expect = 3.4
 Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 3/85 (3%)

Query: 137 LTEDEVKF-KKPKKKVRKIRKTKLRADDLLNMDSGADQSSEMMKREVKSEPESPYRRSGS 195
           LTE+E++F    KK  +KI+K   +A+     +   ++  +    + K E E   +    
Sbjct: 394 LTEEEIEFLTGSKKATKKIKKIVEKAEKKRE-EEKKEKKKKAFAGKKKEEEEEEEKEKKE 452

Query: 196 ARVKDEPEDDDDRMELDVDDMEGSQ 220
              ++E E+ ++  E + +  +  Q
Sbjct: 453 EEKEEEEEEAEEEKEEEEEK-KKKQ 476


>gnl|CDD|182247 PRK10115, PRK10115, protease 2; Provisional.
          Length = 686

 Score = 27.2 bits (60), Expect = 8.9
 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 32/101 (31%)

Query: 81  LDEDEFDEDGNPRESQLL------SKYDEEIEGTKKKSFAIARWTLNLKVGGSSPSQLAS 134
           L   EF+E GNP++ Q        S YD        +++               P  L +
Sbjct: 572 LTTGEFEEWGNPQDPQYYEYMKSYSPYD----NVTAQAY---------------PHLLVT 612

Query: 135 DYLTEDEVKFKKPKKKVRKIRKTKLRADDLL-----NMDSG 170
             L + +V++ +P K V K+R  +L+ DD L     +MDSG
Sbjct: 613 TGLHDSQVQYWEPAKWVAKLR--ELKTDDHLLLLCTDMDSG 651


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.308    0.130    0.353 

Gapped
Lambda     K      H
   0.267   0.0696    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,394,466
Number of extensions: 1081606
Number of successful extensions: 849
Number of sequences better than 10.0: 1
Number of HSP's gapped: 838
Number of HSP's successfully gapped: 29
Length of query: 222
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 129
Effective length of database: 6,812,680
Effective search space: 878835720
Effective search space used: 878835720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 57 (25.8 bits)