RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy29
(222 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.2 bits (119), Expect = 2e-07
Identities = 30/253 (11%), Positives = 80/253 (31%), Gaps = 65/253 (25%)
Query: 6 VEHDIKDFTEGRNVEHDIKDFTEGRNVILTLKDQDILAEDASDTLV----------NVNM 55
+ F + + + D++D ++++ + I+ + + M
Sbjct: 22 LSVFEDAFVDNFDCK-DVQDMP--KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 56 VD---DERHKKN---VLNRKQKVGGKFGYSALDEDEFDEDGNP--RESQLLSKYDEEIEG 107
V +E + N +++ + + ++ + E + ++Q+ +KY+
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTEQRQ---PSMMTRMYIEQRDRLYNDNQVFAKYNVSRL- 134
Query: 108 TKKKSFAIARWTLNLK---------VGGSSPSQLASDYLTEDEVKFKKPKK----KVRKI 154
+ + + L L+ V GS + +A D +V+ K K ++
Sbjct: 135 --QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 155 RKTKLRADDLLNMDSGADQSSEMMKREVKSEPESPYRRSGSARVKDEPEDDDDRME---- 210
+ +L M + K + +P R S+ +K +
Sbjct: 193 N----SPETVLEM---------LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 211 --------LDVDD 215
L + +
Sbjct: 240 SKPYENCLLVLLN 252
Score = 29.4 bits (65), Expect = 1.0
Identities = 23/139 (16%), Positives = 44/139 (31%), Gaps = 29/139 (20%)
Query: 17 RNVEH--DIKDFTEGRNVILTLKDQDILAEDASDTLVNVNMVDDERHKKNVLNRKQKVG- 73
NV++ F ++LT + + + ++ T ++++ H L +
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD----HHSMTLTPDEVKSL 306
Query: 74 -GKFGYSALDEDEFD-----EDGNPRESQLLSKYDEEIEGTKKKSFAIARWTLNLKVGGS 127
K+ LD D NPR LS I + +A W V
Sbjct: 307 LLKY----LDCRPQDLPREVLTTNPR---RLS-----IIAESIRDG-LATWDNWKHVNCD 353
Query: 128 SPSQLAS---DYLTEDEVK 143
+ + + L E +
Sbjct: 354 KLTTIIESSLNVLEPAEYR 372
Score = 27.1 bits (59), Expect = 5.9
Identities = 24/204 (11%), Positives = 65/204 (31%), Gaps = 49/204 (24%)
Query: 5 KVEHDIK------DFTEGRNVEHDIKDFTEGRNV-ILTLKDQDILAEDASDTLVNVNMVD 57
K+ I+ + E R + + F ++ + L ++ D + +V +V
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS---LIWFDVIKS--DVMVVV 408
Query: 58 DERHKKNVLNRKQKVGGKFGYSALDEDEFDEDGNPRE--SQLLSKYD------------- 102
++ HK +++ ++ K ++ + + N ++ Y+
Sbjct: 409 NKLHKYSLVEKQPK-ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 103 --------------EEIEGTKKKSFAIARWTLNL-----KVGGSSPSQLASDYLTEDEVK 143
+ IE ++ + L+ K+ S + AS + +
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTL-FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526
Query: 144 FKKPKKKVRKIRKT-KLRADDLLN 166
K K + + + +L+
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILD 550
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay,
ribosomal protein,hydrolase; 9.50A {Saccharomyces
cerevisiae}
Length = 611
Score = 30.5 bits (69), Expect = 0.53
Identities = 21/127 (16%), Positives = 45/127 (35%), Gaps = 1/127 (0%)
Query: 82 DEDEFDEDGNPRESQLLSKYDEEIEGTKKKSFAIARWTLNLKVGGSSPS-QLASDYLTED 140
DE EFD+ N E +L+++ ++ + +L L + ++ + L +
Sbjct: 18 DEGEFDDYLNDDEYELMNEVFPTLKAQLQDYQGWDNLSLKLALFDNNFDLESTLAELKKT 77
Query: 141 EVKFKKPKKKVRKIRKTKLRADDLLNMDSGADQSSEMMKREVKSEPESPYRRSGSARVKD 200
K K PKK + + L N+ + ++ + + E R A +
Sbjct: 78 LKKKKTPKKPIAAANGSANVTQKLANISISQQRPNDRLPDWLDEEESEGERNGEEANDEK 137
Query: 201 EPEDDDD 207
+
Sbjct: 138 TVQRYYK 144
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 2.6
Identities = 15/102 (14%), Positives = 33/102 (32%), Gaps = 30/102 (29%)
Query: 127 SSPSQLASDYL--TEDEVKFKKP-------KKKVRKIRKTKLRADDL------LNMDSGA 171
++P++L +L V+ K + + L +D+ L ++
Sbjct: 55 TTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDT 114
Query: 172 D------------QSSEMMKREVKSEPESP-YR--RSGSARV 198
+ M KR + S +R G+A++
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL 156
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 3.0
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 16/40 (40%)
Query: 94 ESQLLSKYDEEIEGTKKKSFAIARWTLNLKVGGSSPSQLA 133
E Q L K ++ + L L S+P+ LA
Sbjct: 18 EKQALKK----LQAS-----------LKLYADDSAPA-LA 41
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family,
nucleus, phosphoprotein, protein transport; HET: GTP;
2.92A {Homo sapiens}
Length = 1204
Score = 28.1 bits (61), Expect = 3.0
Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Query: 138 TEDEVKFKKPKKKVRKIRKTKLRADDLLNMDSGADQSSEMMKREVKSEPESPYRRSGSAR 197
+ ++ +K K RK + + L+ G E ++EV + +
Sbjct: 1129 FDCKLLNPSLQKVADKRRKDQFK--RLIAGCIGKPLG-EQFRKEVHIKNLPSLFKKTKPM 1185
Query: 198 VKDEPEDDDD 207
++ E D+D
Sbjct: 1186 LETEVLDNDG 1195
>3iyn_N Protein IIIA, peripentonal hexon-associated protein; cryoem, 3D
reconstruction, FULL-ATOM model interaction network,
capsid protein, hexon protein; 3.60A {Human adenovirus
5}
Length = 585
Score = 27.1 bits (59), Expect = 5.2
Identities = 15/99 (15%), Positives = 34/99 (34%), Gaps = 1/99 (1%)
Query: 124 VGGSSPSQLASDYLTEDEVKFKKPKKKVRKIRKTKLRADDLLNMDSGADQSSEMMKREVK 183
++ +L + + + ++K + L++ S ++ +
Sbjct: 476 STRTTRPRLLGEEEYLNNSLLQPQREKNLPPAFPNNGIESLVDKMSRWKTYAQEHRDVPG 535
Query: 184 SEPESPYRRSGSARVKDEPEDDDDRMELDVDDMEGSQNP 222
P + +R R +DD + V D+ GS NP
Sbjct: 536 PRPPTRRQRHDRQRGLVWEDDDSAD-DSSVLDLGGSGNP 573
>1q2y_A Protein YJCF, similar to hypothetical proteins; GCN5-related
N-acetyltransferase superfamily fold, NYSGXRC, PSI,
protein structure initiative; 2.00A {Bacillus subtilis}
SCOP: d.108.1.1
Length = 140
Score = 26.4 bits (59), Expect = 5.3
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 74 GKFGYSALDEDEFDEDGNP 92
K GY L E EF + G P
Sbjct: 115 KKHGYRVLSEKEFLDAGIP 133
>1jqk_A CODH, carbon monoxide dehydrogenase; rossmann fold, oxidoreductase;
2.80A {Rhodospirillum rubrum} SCOP: e.26.1.2
Length = 639
Score = 26.9 bits (59), Expect = 7.5
Identities = 7/46 (15%), Positives = 17/46 (36%)
Query: 14 TEGRNVEHDIKDFTEGRNVILTLKDQDILAEDASDTLVNVNMVDDE 59
GR++ ++ ++G +++D+ L A V
Sbjct: 97 EHGRHIALAMQHISQGELHDYSIRDEAKLYAIAKTLGVATEGRGLL 142
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP:
a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Length = 549
Score = 26.5 bits (58), Expect = 9.5
Identities = 21/141 (14%), Positives = 45/141 (31%), Gaps = 9/141 (6%)
Query: 23 IKDFTEGRNVILTLKDQDILAEDASDTLVNVNMVDDERHKKNVLNRKQKVGGKFGYSALD 82
I DF E R+ + L+ ++I ED S+ + M N L ++ + G
Sbjct: 18 IHDF-EPRDALTYLEGKNIFTEDHSELI--SKMSTRLERIANFLRIYRRQASELGPLI-- 72
Query: 83 EDEFDEDGNPRESQLLSKYDEEIEGTKKKSFAIARWTLNLKVGGSSPSQLASDYLTEDEV 142
D F+ + + L Y + + + + + + ++
Sbjct: 73 -DFFNYNNQSHLADFLEDYIDFA---INEPDLLRPVVIAPQFSRQMLDRKLLLGNVPKQM 128
Query: 143 KFKKPKKKVRKIRKTKLRADD 163
+ V ++ K D
Sbjct: 129 TCYIREYHVDRVIKKLDEMCD 149
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.308 0.130 0.353
Gapped
Lambda K H
0.267 0.0538 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,345,298
Number of extensions: 196573
Number of successful extensions: 242
Number of sequences better than 10.0: 1
Number of HSP's gapped: 241
Number of HSP's successfully gapped: 19
Length of query: 222
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 132
Effective length of database: 4,188,903
Effective search space: 552935196
Effective search space used: 552935196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.4 bits)