BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2900
(265 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OAA|G Chain G, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|O Chain O, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|W Chain W, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|EE Chain e, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 286
Score = 229 bits (584), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 106/270 (39%), Positives = 179/270 (66%), Gaps = 13/270 (4%)
Query: 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTD 60
MV+ASKMRK+Q+RM A+RPY+ ++++I +L + E ++ + + ++ +KRV ++++TD
Sbjct: 25 MVAASKMRKSQDRMAASRPYAETMRKVIGHLAHGNLEYKHPYLEDRD-VKRVGYLVVSTD 83
Query: 61 KGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDIL 120
+GLCG +N N+F+ L+ ++ KG D +IG KG++F N + +T +GD
Sbjct: 84 RGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIGSKGVSFFNSVGGNVVAQVTGMGDNP 143
Query: 121 YFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPIKN-- 178
++L +K++++ Y +D +YI+ KFINT+ Q TIS+LLP P +
Sbjct: 144 SLSELIGPVKVMLQAYDEGRLDKLYIVSNKFINTMSQVPTISQLLP-------LPASDDD 196
Query: 179 --KYSSY-YIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYI 235
K+ S+ Y+YE + L++ L RY+E+ +YQ + EN+ASEQ +RM+AMK+A++N +
Sbjct: 197 DLKHKSWDYLYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSL 256
Query: 236 IDELKLIYNKTRQATITKELSEIISGSSVV 265
I EL+L+YNK RQA+IT+EL+EI+SG++ V
Sbjct: 257 IKELQLVYNKARQASITQELTEIVSGAAAV 286
>pdb|1FS0|G Chain G, Complex Of GammaEPSILON ATP SYNTHASE FROM E.COLI
Length = 230
Score = 181 bits (459), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 85/231 (36%), Positives = 146/231 (63%), Gaps = 13/231 (5%)
Query: 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTD 60
MV+ASKMRK+Q+RM A+RPY+ ++++I +L + E ++ + + ++ +KRV ++++TD
Sbjct: 8 MVAASKMRKSQDRMAASRPYAETMRKVIGHLAHGNLEYKHPYLEDRD-VKRVGYLVVSTD 66
Query: 61 KGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDIL 120
+GLCG +N N+F+ L+ ++ KG D +IG KG++F N + +T +GD
Sbjct: 67 RGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIGSKGVSFFNSVGGNVVAQVTGMGDNP 126
Query: 121 YFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPIKN-- 178
++L +K++++ Y +D +YI+ KFINT+ Q TIS+LLP P +
Sbjct: 127 SLSELIGPVKVMLQAYDEGRLDKLYIVSNKFINTMSQVPTISQLLP-------LPASDDD 179
Query: 179 --KYSSY-YIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMK 226
K+ S+ Y+YE + L++ L RY+E+ +YQ + EN+ASEQ +RM+AMK
Sbjct: 180 DLKHKSWDYLYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMK 230
>pdb|2QE7|G Chain G, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 286
Score = 145 bits (365), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 151/267 (56%), Gaps = 9/267 (3%)
Query: 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTD 60
MV+A+K+R+ Q ARPY+ IK +I ++ + + + + +K+ ++IT+D
Sbjct: 26 MVAAAKLRRAQETAENARPYADKIKEVISSIAAGTKDFSHPMLEARP-VKKTGYMVITSD 84
Query: 61 KGLCGSINSNIFRILIKKINEL-ESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDI 119
+GL G N+NI R++ K I E +SK ++ F +G+KG +F + +T I D
Sbjct: 85 RGLAGPYNANILRLVSKTIEERHQSKDEYV-IFAVGRKGRDFFKKRGYPVVEEVTGISDT 143
Query: 120 LYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPF-SDKYLTFPIKN 178
++ ++ + + + + D + I Y +F++ + Q+ +LLP S++ L P+
Sbjct: 144 PSLTEIQDIAQSAIGMFADETFDKLTIFYNEFVSPIVQRPVEKQLLPLTSEEVLDGPV-- 201
Query: 179 KYSSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDE 238
S Y YE + ++ L +Y E LIY ++ + ASE +RM AM +A++NA +++
Sbjct: 202 ---SAYEYEPDSESVLEVLLPKYAETLIYSALLDAKASEFGARMTAMGNATDNATEMLET 258
Query: 239 LKLIYNKTRQATITKELSEIISGSSVV 265
L L +N+ RQA IT+E++EI++G++ +
Sbjct: 259 LTLQFNRARQAAITQEIAEIVAGANAL 285
>pdb|2W6E|G Chain G, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|G Chain G, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|G Chain G, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|G Chain G, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|G Chain G, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|G Chain G, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 298
Score = 83.6 bits (205), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 133/270 (49%), Gaps = 27/270 (10%)
Query: 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTD 60
MV+A+K + + + AR Y V L + + KKK+ II +++D
Sbjct: 50 MVAAAKYARAERELKPARVYGVG-----SLALYEKADIKTPEDKKKH-----LIIGVSSD 99
Query: 61 KGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEINIKTKLCIT--QIG- 117
+GLCG+I+S++ + + + L + G + +G K + L+ + + +T ++G
Sbjct: 100 RGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRSILHRTH-SDQFLVTFKEVGR 158
Query: 118 -DILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPI 176
+ + +++L Y+ D II+ +F + + K + T
Sbjct: 159 RPPTFGDASVIALELLNSGYE---FDEGSIIFNRFRSVISYKTEEKPIFSLD----TISS 211
Query: 177 KNKYSSYYIYETNILVLINKLFIRYIEA-LIYQSISENIASEQVSRMIAMKSASENADYI 235
S Y + ++L + + Y A +IY S+ E+ SEQ +RM AM +AS+NA +
Sbjct: 212 AESMSIYDDIDADVL----RNYQEYSLANIIYYSLKESTTSEQSARMTAMDNASKNASEM 267
Query: 236 IDELKLIYNKTRQATITKELSEIISGSSVV 265
ID+L L +N+TRQA ITKEL EIISG++ +
Sbjct: 268 IDKLTLTFNRTRQAVITKELIEIISGAAAL 297
>pdb|1COW|G Chain G, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|G Chain G, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1BMF|G Chain G, Bovine Mitochondrial F1-Atpase
pdb|1NBM|G Chain G, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1QO1|G Chain G, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|G Chain G, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|G Chain G, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|G Chain G, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|G Chain G, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|G Chain G, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1W0J|G Chain G, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|G Chain G, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|G Chain G, Azide Inhibited Bovine F1-Atpase
pdb|2JIZ|G Chain G, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|N Chain N, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|G Chain G, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|N Chain N, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|G Chain G, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|N Chain N, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|G Chain G, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2WSS|G Chain G, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|P Chain P, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2XND|G Chain G, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 272
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 133/270 (49%), Gaps = 27/270 (10%)
Query: 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTD 60
MV+A+K + + + AR Y V L + + KKK+ II +++D
Sbjct: 25 MVAAAKYARAERELKPARVYGVG-----SLALYEKADIKTPEDKKKH-----LIIGVSSD 74
Query: 61 KGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEINIKTKLCIT--QIG- 117
+GLCG+I+S++ + + + L + G + +G K + L+ + + +T ++G
Sbjct: 75 RGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRSILHRTH-SDQFLVTFKEVGR 133
Query: 118 -DILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPI 176
+ + +++L Y+ D II+ +F + + K + T
Sbjct: 134 RPPTFGDASVIALELLNSGYE---FDEGSIIFNRFRSVISYKTEEKPIFSLD----TISS 186
Query: 177 KNKYSSYYIYETNILVLINKLFIRYIEA-LIYQSISENIASEQVSRMIAMKSASENADYI 235
S Y + ++L + + Y A +IY S+ E+ SEQ +RM AM +AS+NA +
Sbjct: 187 AESMSIYDDIDADVL----RNYQEYSLANIIYYSLKESTTSEQSARMTAMDNASKNASEM 242
Query: 236 IDELKLIYNKTRQATITKELSEIISGSSVV 265
ID+L L +N+TRQA ITKEL EIISG++ +
Sbjct: 243 IDKLTLTFNRTRQAVITKELIEIISGAAAL 272
>pdb|2JDI|G Chain G, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|4ASU|G Chain G, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 273
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 133/270 (49%), Gaps = 27/270 (10%)
Query: 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTD 60
MV+A+K + + + AR Y V L + + KKK+ II +++D
Sbjct: 25 MVAAAKYARAERELKPARVYGVG-----SLALYEKADIKTPEDKKKH-----LIIGVSSD 74
Query: 61 KGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEINIKTKLCIT--QIG- 117
+GLCG+I+S++ + + + L + G + +G K + L+ + + +T ++G
Sbjct: 75 RGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRSILHRTH-SDQFLVTFKEVGR 133
Query: 118 -DILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPI 176
+ + +++L Y+ D II+ +F + + K + T
Sbjct: 134 RPPTFGDASVIALELLNSGYE---FDEGSIIFNRFRSVISYKTEEKPIFSLD----TISS 186
Query: 177 KNKYSSYYIYETNILVLINKLFIRYIEA-LIYQSISENIASEQVSRMIAMKSASENADYI 235
S Y + ++L + + Y A +IY S+ E+ SEQ +RM AM +AS+NA +
Sbjct: 187 AESMSIYDDIDADVL----RNYQEYSLANIIYYSLKESTTSEQSARMTAMDNASKNASEM 242
Query: 236 IDELKLIYNKTRQATITKELSEIISGSSVV 265
ID+L L +N+TRQA ITKEL EIISG++ +
Sbjct: 243 IDKLTLTFNRTRQAVITKELIEIISGAAAL 272
>pdb|1MAB|G Chain G, Rat Liver F1-Atpase
Length = 270
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 131/269 (48%), Gaps = 25/269 (9%)
Query: 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTD 60
MV+A+K + + + AR Y L E + KKK+ II +++D
Sbjct: 22 MVAAAKYARAERELKPARVYGTG-----SLALYEKAEIKGPEDKKKH-----LIIGVSSD 71
Query: 61 KGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEINIKTKL-CITQIG-- 117
+GLCG+I+S++ + + + L + G + IG+K + L + L +G
Sbjct: 72 RGLCGAIHSSVAKQMKNDMAALTAAGKEVMIVGIGEKIKSILYRTHSDQFLVSFKDVGRK 131
Query: 118 DILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPIK 177
+ + +++L Y+ D II+ +F + + K + FS T
Sbjct: 132 PPTFGDASVIALELLNSGYE---FDEGSIIFNQFKSVISYKTEEKPIFSFS----TVVAA 184
Query: 178 NKYSSYYIYETNILVLINKLFIRY-IEALIYQSISENIASEQVSRMIAMKSASENADYII 236
S Y + ++L + + Y + +IY S+ E+ SEQ +RM AM +AS+NA +I
Sbjct: 185 ENMSIYDDIDADVL----QNYQEYNLANIIYYSLKESTTSEQSARMTAMDNASKNASDMI 240
Query: 237 DELKLIYNKTRQATITKELSEIISGSSVV 265
D+L L +N+TRQA ITKEL EIISG++ +
Sbjct: 241 DKLTLTFNRTRQAVITKELIEIISGAAAL 269
>pdb|2F43|G Chain G, Rat Liver F1-atpase
Length = 273
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 131/269 (48%), Gaps = 25/269 (9%)
Query: 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTD 60
MV+A+K + + + AR Y L E + KKK+ II +++D
Sbjct: 25 MVAAAKYARAERELKPARVYGTG-----SLALYEKAEIKGPEDKKKH-----LIIGVSSD 74
Query: 61 KGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEINIKTKL-CITQIG-- 117
+GLCG+I+S++ + + + L + G + IG+K + L + L +G
Sbjct: 75 RGLCGAIHSSVAKQMKNDMAALTAAGKEVMIVGIGEKIKSILYRTHSDQFLVSFKDVGRK 134
Query: 118 DILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPIK 177
+ + +++L Y+ D II+ +F + + K + FS T
Sbjct: 135 PPTFGDASVIALELLNSGYE---FDEGSIIFNQFKSVISYKTEEKPIFSFS----TVVAA 187
Query: 178 NKYSSYYIYETNILVLINKLFIRY-IEALIYQSISENIASEQVSRMIAMKSASENADYII 236
S Y + ++L + + Y + +IY S+ E+ SEQ +RM AM +AS+NA +I
Sbjct: 188 ENMSIYDDIDADVL----QNYQEYNLANIIYYSLKESTTSEQSARMTAMDNASKNASDMI 243
Query: 237 DELKLIYNKTRQATITKELSEIISGSSVV 265
D+L L +N+TRQA ITKEL EIISG++ +
Sbjct: 244 DKLTLTFNRTRQAVITKELIEIISGAAAL 272
>pdb|2XOK|G Chain G, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 311
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 106/213 (49%), Gaps = 14/213 (6%)
Query: 54 IILITTDKGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQK-GLNFLNEINIKTKLC 112
I+ IT+DKGLCGSI+S + + + + +N+ + D IG K + L KL
Sbjct: 107 IVAITSDKGLCGSIHSQLAKAVRRHLNDQPN----ADIVTIGDKIKMQLLRTHPNNIKLS 162
Query: 113 ITQIG-DILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKY 171
I IG D F + + L+ K I I Y +++L + + + F+ K
Sbjct: 163 INGIGKDAPTFQESALIADKLLSVMKAGTYPKISIFYNDPVSSLSFEPSEKPI--FNAKT 220
Query: 172 LTFPIKNKYSSYYIYETNILVLINKLFIRYIEA-LIYQSISENIASEQVSRMIAMKSASE 230
+ + S+ +E + + + Y A + ++++ A+E +R AM +AS+
Sbjct: 221 I-----EQSPSFGKFEIDTDANVPRDLFEYTLANQMLTAMAQGYAAEISARRNAMDNASK 275
Query: 231 NADYIIDELKLIYNKTRQATITKELSEIISGSS 263
NA +I+ ++YN+TRQA IT EL +II+G+S
Sbjct: 276 NAGDMINRYSILYNRTRQAVITNELVDIITGAS 308
>pdb|2HLD|G Chain G, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|P Chain P, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|Y Chain Y, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|3FKS|G Chain G, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|P Chain P, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|Y Chain Y, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|2WPD|G Chain G, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3OEE|G Chain G, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|P Chain P, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|Y Chain Y, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEH|G Chain G, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|P Chain P, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|Y Chain Y, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OFN|G Chain G, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|P Chain P, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|Y Chain Y, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3ZRY|G Chain G, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|4B2Q|G Chain G, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|GG Chain g, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|3ZIA|G Chain G, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|Q Chain Q, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 278
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 106/213 (49%), Gaps = 14/213 (6%)
Query: 54 IILITTDKGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQK-GLNFLNEINIKTKLC 112
I+ IT+DKGLCGSI+S + + + + +N+ + D IG K + L KL
Sbjct: 74 IVAITSDKGLCGSIHSQLAKAVRRHLNDQPN----ADIVTIGDKIKMQLLRTHPNNIKLS 129
Query: 113 ITQIG-DILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKY 171
I IG D F + + L+ K I I Y +++L + + + F+ K
Sbjct: 130 INGIGKDAPTFQESALIADKLLSVMKAGTYPKISIFYNDPVSSLSFEPSEKPI--FNAKT 187
Query: 172 LTFPIKNKYSSYYIYETNILVLINKLFIRYIEA-LIYQSISENIASEQVSRMIAMKSASE 230
+ + S+ +E + + + Y A + ++++ A+E +R AM +AS+
Sbjct: 188 I-----EQSPSFGKFEIDTDANVPRDLFEYTLANQMLTAMAQGYAAEISARRNAMDNASK 242
Query: 231 NADYIIDELKLIYNKTRQATITKELSEIISGSS 263
NA +I+ ++YN+TRQA IT EL +II+G+S
Sbjct: 243 NAGDMINRYSILYNRTRQAVITNELVDIITGAS 275
>pdb|3OE7|G Chain G, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|P Chain P, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|Y Chain Y, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
Length = 278
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 105/213 (49%), Gaps = 14/213 (6%)
Query: 54 IILITTDKGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQK-GLNFLNEINIKTKLC 112
I+ IT+DKGLCGSI+S + + + + +N+ + D IG K + L KL
Sbjct: 74 IVAITSDKGLCGSIHSQLAKAVRRHLNDQPN----ADIVTIGDKIKMQLLRTHPNNIKLS 129
Query: 113 ITQIG-DILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKY 171
I IG D F + + L+ K I I Y +++L + + + F+ K
Sbjct: 130 INGIGKDAPTFQESALIADKLLSVMKAGTYPKISIFYNDPVSSLSFEPSEKPI--FNAKT 187
Query: 172 LTFPIKNKYSSYYIYETNILVLINKLFIRYIEA-LIYQSISENIASEQVSRMIAMKSASE 230
+ + S+ +E + + + Y A + ++++ A+E +R AM +AS+
Sbjct: 188 I-----EQSPSFGKFEIDTDANVPRDLFEYTLANQMLTAMAQGYAAEISARRNAMDNASK 242
Query: 231 NADYIIDELKLIYNKTRQATITKELSEIISGSS 263
NA +I+ ++YN+TRQA IT EL + I+G+S
Sbjct: 243 NAGDMINRYSILYNRTRQAVITNELVDTITGAS 275
>pdb|1OHH|G Chain G, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
Length = 100
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 46/60 (76%)
Query: 206 IYQSISENIASEQVSRMIAMKSASENADYIIDELKLIYNKTRQATITKELSEIISGSSVV 265
I+ S+++ SEQ +RM AM +AS+NA +ID+L L +N+TRQA ITKEL EIISG++ +
Sbjct: 35 IHSSVAKQTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 94
>pdb|3LW7|A Chain A, The Crystal Structure Of An Adenylate Kinase-Related
Protein Bound To Amp From Sulfolobus Solfataricus To
2.3a
pdb|3LW7|B Chain B, The Crystal Structure Of An Adenylate Kinase-Related
Protein Bound To Amp From Sulfolobus Solfataricus To
2.3a
Length = 179
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 65/136 (47%), Gaps = 36/136 (26%)
Query: 52 VAIILITTDKGLCGSINSNIFRIL-------------IKKINELESKGNFIDFFVIGQKG 98
+ +ILIT G+ GS S ++L ++K +E+K G++
Sbjct: 1 IKVILIT---GMPGSGKSEFAKLLKERGAKVIVMSDVVRKRYSIEAK--------PGERL 49
Query: 99 LNF---LNEI---NIKTKLCITQIG----DILYFNKLTNLIKILVKDYKNNLIDSIYIIY 148
++F L EI + +LC+ ++G D++ F+ + +L + V+++K L DS+YI+
Sbjct: 50 MDFAKRLREIYGDGVVARLCVEELGTSNHDLVVFDGVRSLAE--VEEFKRLLGDSVYIVA 107
Query: 149 TKFINTLQQKATISKL 164
++ K I +L
Sbjct: 108 VHSPPKIRYKRMIERL 123
>pdb|3H0K|A Chain A, Crystal Structure Of An Adenylated Kinase Related Protein
From Sulfolobus Solfataricus To 3.25a
pdb|3H0K|B Chain B, Crystal Structure Of An Adenylated Kinase Related Protein
From Sulfolobus Solfataricus To 3.25a
Length = 178
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 64/134 (47%), Gaps = 36/134 (26%)
Query: 54 IILITTDKGLCGSINSNIFRIL-------------IKKINELESKGNFIDFFVIGQKGLN 100
+ILIT G+ GS S ++L ++K +E+K G++ ++
Sbjct: 2 VILIT---GMPGSGKSEFAKLLKERGAKVIVMSDVVRKRYSIEAK--------PGERLMD 50
Query: 101 F---LNEI---NIKTKLCITQIG----DILYFNKLTNLIKILVKDYKNNLIDSIYIIYTK 150
F L EI + +LC+ ++G D++ F+ + +L + V+++K L DS+YI+
Sbjct: 51 FAKRLREIYGDGVVARLCVEELGTSNHDLVVFDGVRSLAE--VEEFKRLLGDSVYIVAVH 108
Query: 151 FINTLQQKATISKL 164
++ K I +L
Sbjct: 109 SPPKIRYKRMIERL 122
>pdb|3S8Y|A Chain A, Bromide Soaked Structure Of An Esterase From The
Oil-Degrading Bacterium Oleispira Antarctica
Length = 280
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 166 PFSDKYLTFPIKNKYSSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAM 225
P+ K T + ++ Y+ ++L+ K +Y+ AL+ Q ++N +EQ+ +
Sbjct: 182 PWGQKAFTAYLGKDTDTWREYDASLLMRAAK---QYVPALVDQGEADNFLAEQLKPEVLE 238
Query: 226 KSASEN 231
+AS N
Sbjct: 239 AAASSN 244
>pdb|3O26|A Chain A, The Structure Of Salutaridine Reductase From Papaver
Somniferum
Length = 311
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 108 KTKLCITQIGDILYFNKLTNLIKILVKDYKNNLIDS 143
+T L I GD L ++ ++ +L+KD+K NLI++
Sbjct: 191 ETALEILGDGDALTEERIDMVVNMLLKDFKENLIET 226
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,276,579
Number of Sequences: 62578
Number of extensions: 230111
Number of successful extensions: 582
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 555
Number of HSP's gapped (non-prelim): 25
length of query: 265
length of database: 14,973,337
effective HSP length: 97
effective length of query: 168
effective length of database: 8,903,271
effective search space: 1495749528
effective search space used: 1495749528
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)