Query psy2900
Match_columns 265
No_of_seqs 120 out of 1060
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 20:29:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2900.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2900hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0224 AtpG F0F1-type ATP syn 100.0 1.1E-82 2.4E-87 556.5 11.8 264 1-265 22-286 (287)
2 PRK13427 F0F1 ATP synthase sub 100.0 3.5E-77 7.6E-82 530.7 12.9 263 1-265 26-288 (289)
3 PRK14111 F0F1 ATP synthase sub 100.0 5.3E-76 1.1E-80 523.7 12.1 261 1-265 26-288 (290)
4 PRK13424 F0F1 ATP synthase sub 100.0 1.1E-75 2.3E-80 522.2 12.3 263 1-265 26-289 (291)
5 PRK13423 F0F1 ATP synthase sub 100.0 1.4E-75 3.1E-80 520.5 12.4 261 1-265 26-286 (288)
6 PRK13425 F0F1 ATP synthase sub 100.0 1.8E-75 3.9E-80 520.2 11.7 261 1-265 26-289 (291)
7 PRK13426 F0F1 ATP synthase sub 100.0 5.8E-75 1.2E-79 517.3 13.7 263 1-264 26-290 (291)
8 PRK13422 F0F1 ATP synthase sub 100.0 5.2E-75 1.1E-79 518.9 13.4 263 1-265 26-298 (298)
9 PRK14110 F0F1 ATP synthase sub 100.0 5.8E-75 1.3E-79 517.2 12.2 262 1-265 28-290 (291)
10 PF00231 ATP-synt: ATP synthas 100.0 4.8E-76 1E-80 525.1 4.6 265 1-265 25-290 (290)
11 TIGR01146 ATPsyn_F1gamma ATP s 100.0 4.5E-74 9.7E-79 511.3 13.1 262 1-265 26-287 (287)
12 PRK05621 F0F1 ATP synthase sub 100.0 6.6E-73 1.4E-77 503.2 13.0 259 1-265 26-284 (284)
13 TIGR03323 alt_F1F0_F1_gam alte 100.0 7.3E-73 1.6E-77 502.1 12.7 258 1-265 20-285 (285)
14 KOG1531|consensus 100.0 3.9E-63 8.4E-68 420.8 12.8 249 1-265 53-303 (304)
15 PF00700 Flagellin_C: Bacteria 62.9 9.1 0.0002 27.2 3.0 49 211-259 11-59 (86)
16 PF14156 AbbA_antirepres: Anti 61.0 48 0.001 22.3 6.1 38 212-249 24-63 (63)
17 smart00216 VWD von Willebrand 54.7 4.3 9.2E-05 32.5 0.1 13 59-71 141-153 (162)
18 COG1692 Calcineurin-like phosp 54.2 6.3 0.00014 34.4 1.1 22 56-77 192-213 (266)
19 PRK04456 acetyl-CoA decarbonyl 53.9 6.9 0.00015 36.8 1.4 24 53-76 201-225 (463)
20 PF03598 CdhC: CO dehydrogenas 52.9 7 0.00015 36.4 1.2 25 54-78 200-225 (411)
21 TIGR00316 cdhC CO dehydrogenas 52.1 7.7 0.00017 36.5 1.4 25 53-77 198-223 (458)
22 PF02870 Methyltransf_1N: 6-O- 51.2 9.5 0.00021 26.5 1.5 12 54-65 14-25 (77)
23 PF00094 VWD: von Willebrand f 50.2 6.2 0.00013 31.0 0.4 14 58-71 136-149 (159)
24 PF08967 DUF1884: Domain of un 44.9 13 0.00028 26.7 1.3 36 69-104 8-43 (85)
25 PF10138 vWA-TerF-like: vWA fo 42.0 1.3E+02 0.0028 25.5 7.1 49 52-106 105-153 (200)
26 PF07640 QPP: QPP; InterPro: 41.8 9.2 0.0002 22.9 0.1 11 64-74 11-21 (36)
27 PF10960 DUF2762: Protein of u 40.3 80 0.0017 22.0 4.7 57 191-247 3-59 (71)
28 PRK09529 bifunctional acetyl-C 38.8 16 0.00035 36.4 1.4 25 53-77 499-524 (711)
29 TIGR00282 metallophosphoestera 36.4 18 0.0004 32.0 1.2 27 56-82 193-219 (266)
30 cd01462 VWA_YIEM_type VWA YIEM 35.4 81 0.0018 24.5 4.8 42 53-99 96-137 (152)
31 PF10307 DUF2410: Hypothetical 35.1 1E+02 0.0022 26.0 5.4 81 58-148 46-140 (197)
32 PRK08883 ribulose-phosphate 3- 31.7 96 0.0021 26.5 4.9 50 52-101 130-180 (220)
33 PF14599 zinc_ribbon_6: Zinc-r 30.6 15 0.00033 24.9 -0.2 8 63-70 53-60 (61)
34 PRK05752 uroporphyrinogen-III 30.4 36 0.00078 29.5 2.1 50 51-109 55-104 (255)
35 COG1587 HemD Uroporphyrinogen- 29.3 14 0.00031 31.9 -0.6 50 52-109 51-100 (248)
36 PF12209 SAC3: Leucine permeas 28.4 1.9E+02 0.004 20.6 5.1 33 191-223 40-72 (79)
37 COG1614 CdhC CO dehydrogenase/ 27.9 33 0.00072 31.4 1.4 25 52-76 199-224 (470)
38 PF01866 Diphthamide_syn: Puta 27.4 1.3E+02 0.0028 27.0 5.2 49 50-105 210-258 (307)
39 PF04604 L_biotic_typeA: Type- 26.4 33 0.00072 22.3 0.8 27 225-262 1-27 (51)
40 PF02401 LYTB: LytB protein; 26.3 93 0.002 27.8 4.0 56 55-116 1-61 (281)
41 PF02698 DUF218: DUF218 domain 26.3 52 0.0011 25.8 2.2 64 86-153 36-110 (155)
42 cd07382 MPP_DR1281 Deinococcus 25.9 35 0.00075 30.0 1.2 26 56-81 190-215 (255)
43 COG3377 Uncharacterized conser 25.7 75 0.0016 23.3 2.6 45 50-105 22-68 (95)
44 PF11513 TA0956: Thermoplasma 24.9 2.1E+02 0.0045 21.1 4.8 41 48-88 61-105 (110)
45 PF13277 YmdB: YmdB-like prote 23.2 38 0.00083 29.7 0.9 25 57-81 189-213 (253)
46 PRK09189 uroporphyrinogen-III 22.3 73 0.0016 27.1 2.5 46 53-108 50-95 (240)
47 PF03486 HI0933_like: HI0933-l 21.8 27 0.00059 32.8 -0.3 11 61-71 388-398 (409)
48 TIGR03862 flavo_PP4765 unchara 21.7 31 0.00067 32.1 0.0 11 61-71 349-359 (376)
49 KOG2807|consensus 21.4 2.3E+02 0.005 25.9 5.4 101 50-150 60-173 (378)
50 PRK08073 flgL flagellar hook-a 21.1 1.1E+02 0.0025 27.0 3.6 49 211-259 214-262 (287)
51 cd01458 vWA_ku Ku70/Ku80 N-ter 20.9 1.7E+02 0.0037 24.5 4.5 47 52-99 129-175 (218)
52 PRK09739 hypothetical protein; 20.3 1.9E+02 0.0042 23.8 4.6 40 52-96 5-44 (199)
53 PF07700 HNOB: Heme NO binding 20.2 58 0.0013 26.4 1.4 43 37-80 114-157 (171)
No 1
>COG0224 AtpG F0F1-type ATP synthase, gamma subunit [Energy production and conversion]
Probab=100.00 E-value=1.1e-82 Score=556.46 Aligned_cols=264 Identities=37% Similarity=0.624 Sum_probs=243.3
Q ss_pred CcchhhhhhhhhcccccCCccchhhHHHHHhhhhhhccccccccccccceeEEEEEEecCCccccccchhHHHHHHHhhh
Q psy2900 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTDKGLCGSINSNIFRILIKKIN 80 (265)
Q Consensus 1 mVAaaKlrka~~~~~~~r~Y~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~IvitSDrGLCG~fN~~v~k~~~~~i~ 80 (265)
|||+|||+|+|+++++++||++++.+++.++.+...+..||++......++++|||||||||||||||+||+|.+...++
T Consensus 22 mVaasKl~kaq~~~~a~~pY~e~i~~vl~~l~~~~~~~~~p~~~~~~e~kr~~~IviTSDrGLcG~~Nsni~k~~~~~i~ 101 (287)
T COG0224 22 MVAASKLRKAQERAEAARPYAEKIRKVLGHLASANLELDHPLLKPTREVKRVLYIVITSDRGLCGGFNSNIFKKVENLIK 101 (287)
T ss_pred HHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcccccCCcccccccCCCceEEEEEecCcchhhhhhHHHHHHHHHHHH
Confidence 89999999999999999999999999999999864456689886433488899999999999999999999999999999
Q ss_pred hhhccCCeeeEEEecccccccccccccccceeeeeecceeeehhhhHHHHHHHHhhhcccceeeeehhhHHHHhhhhhhh
Q psy2900 81 ELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKAT 160 (265)
Q Consensus 81 ~~~~~~~~~~l~~iG~K~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~d~v~ivy~~f~s~~~~~~~ 160 (265)
.++.+|.++.+++||+||.++|+++|.++..++.++++.|+|+.+..|++.+++.|.+|++|+++|+||+|+|+++|+|+
T Consensus 102 ~~~~~~~~~~li~iG~Kg~~~f~~~~~~i~~~~~~l~~~p~~~~~~~i~~~~~~~~~~g~~d~v~l~yn~f~n~~sq~~~ 181 (287)
T COG0224 102 ELKNKGKEVKLILIGKKGIDFFKKRGYNILESFTGLGDNPSFEEAIQIADKILDAFLEGEIDELYLVYNKFKNALSQEPT 181 (287)
T ss_pred hhhccCCceEEEEEchHHHHHHHhcCcchhhHhhccccCCCHHHHHHHHHHHHHHHhCCCCceEEEEecccccceeeeee
Confidence 99888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCCceeeeeccccc-eeeEEEechhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhcccccchhhhhhH
Q psy2900 161 ISKLLPFSDKYLTFPIKNKY-SSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDEL 239 (265)
Q Consensus 161 ~~~llP~~~~~~~~~~~~~~-~~~~~~ep~~~~~l~~l~~~yl~~~ly~al~es~asE~~aRm~AM~~At~Na~e~i~~L 239 (265)
+++|||+++.... ...... .|+|.|||+++++++.|+|+|+.++||+||+||.||||+|||+||++|||||+|||++|
T Consensus 182 ~~~llP~~~~~~~-~~~~~~~~~~~efEpd~e~il~~Ll~~Y~~~~iy~alles~asE~aaRm~AM~~ATdNA~~lI~~l 260 (287)
T COG0224 182 VQQLLPLDKIEDE-AEEEEPGLWDYEFEPDAEEILETLLPRYLESQLYGALLESKASEHAARMTAMKNATDNAGDLIKEL 260 (287)
T ss_pred eEEEecCCcccch-hhhccccccceeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9999999743210 001111 27899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccchhhhHHHhhhccCCcCC
Q psy2900 240 KLIYNKTRQATITKELSEIISGSSVV 265 (265)
Q Consensus 240 ~~~yNk~RQ~~IT~El~EIv~Ga~al 265 (265)
++.|||+||++||+||+|||+||+||
T Consensus 261 ~l~yNk~RQa~ITqEL~EIV~Ga~AL 286 (287)
T COG0224 261 TLVYNKARQAAITQELIEIVGGAEAL 286 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 99999999999999999999999996
No 2
>PRK13427 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=3.5e-77 Score=530.74 Aligned_cols=263 Identities=30% Similarity=0.513 Sum_probs=234.1
Q ss_pred CcchhhhhhhhhcccccCCccchhhHHHHHhhhhhhccccccccccccceeEEEEEEecCCccccccchhHHHHHHHhhh
Q psy2900 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTDKGLCGSINSNIFRILIKKIN 80 (265)
Q Consensus 1 mVAaaKlrka~~~~~~~r~Y~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~IvitSDrGLCG~fN~~v~k~~~~~i~ 80 (265)
|||+||+||||+++++.|||++++.++++++++......||++..++..++++|||||||||||||||++|+|.+.+.++
T Consensus 26 mVAasklrka~~~~~~~r~Y~~~i~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~ivitSDrGLcG~fN~~v~k~~~~~i~ 105 (289)
T PRK13427 26 MVSTAKSKKATDRVNAAHPYANKIKELVSSLASLEGVVHSPYLRRPEKIRTVALLIITANRGLCGGFNSNLNRMAKARIA 105 (289)
T ss_pred HHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhCcCcccCCCcccCCccCceEEEEEeCCCCccccccHHHHHHHHHHHH
Confidence 89999999999999999999999999999998642222478663222245678999999999999999999999999998
Q ss_pred hhhccCCeeeEEEecccccccccccccccceeeeeecceeeehhhhHHHHHHHHhhhcccceeeeehhhHHHHhhhhhhh
Q psy2900 81 ELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKAT 160 (265)
Q Consensus 81 ~~~~~~~~~~l~~iG~K~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~d~v~ivy~~f~s~~~~~~~ 160 (265)
++...++++.+++||+||.++|++++.++...+.++++.|+|+++..+++.+++.|.+|++|+|+|+||+|+|+++|+|.
T Consensus 106 ~~~~~~~~~~~~~vG~kg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~d~v~viy~~f~s~~~q~~~ 185 (289)
T PRK13427 106 ELKKKGVNVELHIVGKKGISFFKFAGEKAEKTYTHIDDKSGYKEAEELANLFMERFANESVDAVEIASTVYYSAASQKPE 185 (289)
T ss_pred HHHhCCCcEEEEEEeHHHHHHHHHcCCCceeeecccCCccCHHHHHHHHHHHHHHHHcCCCCEEEEEecccccceeccee
Confidence 76656667889999999999999888889999999988999999999999999999999999999999999999999999
Q ss_pred hhcccccCCceeeeeccccceeeEEEechhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhcccccchhhhhhHH
Q psy2900 161 ISKLLPFSDKYLTFPIKNKYSSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDELK 240 (265)
Q Consensus 161 ~~~llP~~~~~~~~~~~~~~~~~~~~ep~~~~~l~~l~~~yl~~~ly~al~es~asE~~aRm~AM~~At~Na~e~i~~L~ 240 (265)
+++|||+++... .......++|.|||+++++|+.|+|.|+++.||+||+||++|||+|||+||++|||||+||+++|+
T Consensus 186 ~~~llP~~~~~~--~~~~~~~~~~~~ep~~~~vl~~l~~~yl~~~ly~alles~aSE~aaRm~AM~~At~Na~e~i~~L~ 263 (289)
T PRK13427 186 TTRVLPLEPPTA--AAEGSVQDDVVYEPSPEAILESLLPLVVKTAFLKAILEANASEQIARRIAMKSATDAASEMIKLLT 263 (289)
T ss_pred eEEeeCCCcccc--cccccCCCceEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999953210 011111234899999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccchhhhHHHhhhccCCcCC
Q psy2900 241 LIYNKTRQATITKELSEIISGSSVV 265 (265)
Q Consensus 241 ~~yNk~RQ~~IT~El~EIv~Ga~al 265 (265)
++|||+||++||+||+||||||+||
T Consensus 264 l~yNr~RQ~~IT~EL~EIv~Gaeal 288 (289)
T PRK13427 264 RGYNRVRQAKITQEISEIVGGADAL 288 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999986
No 3
>PRK14111 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=5.3e-76 Score=523.69 Aligned_cols=261 Identities=36% Similarity=0.595 Sum_probs=233.3
Q ss_pred CcchhhhhhhhhcccccCCccchhhHHHHHhhhhhhc--cccccccccccceeEEEEEEecCCccccccchhHHHHHHHh
Q psy2900 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFE--CRNLFFKKKNRIKRVAIILITTDKGLCGSINSNIFRILIKK 78 (265)
Q Consensus 1 mVAaaKlrka~~~~~~~r~Y~~~i~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~IvitSDrGLCG~fN~~v~k~~~~~ 78 (265)
|||+||+||+|+++.+.+||++++.+++.++++..+. ..||++..++..++++|||||||||||||||++|+|.+.+.
T Consensus 26 mvAasklrka~~~~~~~~~Y~~~i~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~IvitSDrGLCG~fN~~l~k~~~~~ 105 (290)
T PRK14111 26 MVSASKMRRAQRNVLATRPYADRIRDVMGDLTARTVGAARVGPLLEKRPTVKRVALILVTPDRGLAGSLNANVLRRAIRF 105 (290)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhcccCccccCcccccCccccceEEEEEeCCCCccccccHHHHHHHHHH
Confidence 7999999999999999999999999999999864321 23776632221466889999999999999999999999999
Q ss_pred hhhhhccCCeeeEEEecccccccccccccccceeeeeecceeeehhhhHHHHHHHHhhhcccceeeeehhhHHHHhhhhh
Q psy2900 79 INELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQK 158 (265)
Q Consensus 79 i~~~~~~~~~~~l~~iG~K~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~d~v~ivy~~f~s~~~~~ 158 (265)
++++...|+++.+++||+||.++|+++|.++...+.++++.|+|+++..+++.+++.|.+|++|+|+|+||+|+|+++|+
T Consensus 106 i~~~~~~~~~~~l~~vG~Kg~~~l~~~~~~i~~~~~~~~~~p~~~~~~~i~~~~~~~~~~~~~d~v~iiy~~f~s~~~~~ 185 (290)
T PRK14111 106 ITDERSMGRTVDVIAIGRKGRDFMVRTGQALVAEFTRLGDAPKLEAILPVATSAINGFQSGKYDEVYVLYSEFINTLVQR 185 (290)
T ss_pred HHHHHhCCCceEEEEEehHHHHHHHHcCCCceeeeecCCCCCCHHHHHHHHHHHHHHHHcCCCCEEEEEecccccceeee
Confidence 98766556677899999999999998898888888888889999999999999999999999999999999999999999
Q ss_pred hhhhcccccCCceeeeeccccceeeEEEechhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhcccccchhhhhh
Q psy2900 159 ATISKLLPFSDKYLTFPIKNKYSSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDE 238 (265)
Q Consensus 159 ~~~~~llP~~~~~~~~~~~~~~~~~~~~ep~~~~~l~~l~~~yl~~~ly~al~es~asE~~aRm~AM~~At~Na~e~i~~ 238 (265)
|.++++||+++.. .. .....+|+|||+++++|+.|+|.|+++.||+|++||++|||+|||+||++|||||+||+++
T Consensus 186 ~~~~~llP~~~~~---~~-~~~~~~~~~ep~~~~il~~L~~~yl~~~ly~al~es~aSE~aaRm~AM~~At~Na~e~i~~ 261 (290)
T PRK14111 186 PTIKQLLPIEPPE---IS-TTTVVDYTYEPSPEEVLRALLPRFVEVQLYQAVLESIASEHSARMVAMRNATDNAKELVRD 261 (290)
T ss_pred eeEEEecCCCccc---cc-cccccceeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999996321 11 1122359999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccchhhhHHHhhhccCCcCC
Q psy2900 239 LKLIYNKTRQATITKELSEIISGSSVV 265 (265)
Q Consensus 239 L~~~yNk~RQ~~IT~El~EIv~Ga~al 265 (265)
|+++|||+||++||+||+|||+||+||
T Consensus 262 L~~~yNr~RQ~~IT~El~EIVsGaeal 288 (290)
T PRK14111 262 LTLTYNKARQAAITKEVSEIASGAAAL 288 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999986
No 4
>PRK13424 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=1.1e-75 Score=522.23 Aligned_cols=263 Identities=29% Similarity=0.519 Sum_probs=233.9
Q ss_pred CcchhhhhhhhhcccccCCccchhhHHHHHhhhhhhccccccccccccceeEEEEEEecCCccccccchhHHHHHHHhhh
Q psy2900 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTDKGLCGSINSNIFRILIKKIN 80 (265)
Q Consensus 1 mVAaaKlrka~~~~~~~r~Y~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~IvitSDrGLCG~fN~~v~k~~~~~i~ 80 (265)
|||+||+||+|+++.+.+||++++.+++.++++......||++..++..++.+|||||||||||||||++|+|.++++++
T Consensus 26 mVAasklrka~~~~~~~~~Y~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~IvitSDrGLCG~fN~~v~k~~~~~i~ 105 (291)
T PRK13424 26 MVASAKLRGAQQRIERFRPYAEKFYDMLGDLASRADSSAHPLLEVREEIKTCGIVLITSDRGLCGSFNANLINAALKLAK 105 (291)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhccCcccCcccccccccCcEEEEEEeCCCcccccchHHHHHHHHHHHH
Confidence 79999999999999999999999999999998643222377663322235678999999999999999999999999998
Q ss_pred hhhccCCeeeEEEecccccccccccccccceeeeeecceeeehhhhHHHHHHHHhhhcccceeeeehhhHHHHhhhhhhh
Q psy2900 81 ELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKAT 160 (265)
Q Consensus 81 ~~~~~~~~~~l~~iG~K~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~d~v~ivy~~f~s~~~~~~~ 160 (265)
++...|+++.+++||+||.++|+++|.++...+.+..+.|+|+.+..+++.+++.|.+|++|+|+|+||+|+|+++|+|.
T Consensus 106 ~~~~~~~~~~l~~vG~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~d~v~viy~~f~s~~~~~~~ 185 (291)
T PRK13424 106 QKTAEGKTVKFYCVGKKGRDAIRKTDFEIVTAYADQMTSFDFQLANSIGLEVIDGYLTGELDEVVLVYGEFVSMARQLPI 185 (291)
T ss_pred HHhhCCCceEEEEeeHHHHHHHHHcCCCeeEeeccCCCCCCHHHHHHHHHHHHHHHHcCCCCEEEEEeccccccccCceE
Confidence 76555667789999999999999889899999999989999999999999999999999999999999999999999999
Q ss_pred hhcccccCCceeeeec-cccceeeEEEechhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhcccccchhhhhhH
Q psy2900 161 ISKLLPFSDKYLTFPI-KNKYSSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDEL 239 (265)
Q Consensus 161 ~~~llP~~~~~~~~~~-~~~~~~~~~~ep~~~~~l~~l~~~yl~~~ly~al~es~asE~~aRm~AM~~At~Na~e~i~~L 239 (265)
+++|||+++... .. ......+|+|||+++++|++|+|.|+++.||+|++||++|||+|||+||++|||||+||+++|
T Consensus 186 ~~~llP~~~~~~--~~~~~~~~~~~~~ep~~~~il~~L~~~yl~~~ly~al~es~asE~aaR~~AM~~At~Na~e~i~~L 263 (291)
T PRK13424 186 TLQILPIAPEEA--EEEEAGASSEYIYEPSVEGLLAELLPRFIKVQIYRGLLDTSASEHAARMTAMDNATRNCDDMIGSL 263 (291)
T ss_pred EEEecCCCcccc--cccccccccCeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999963211 01 110122599999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccchhhhHHHhhhccCCcCC
Q psy2900 240 KLIYNKTRQATITKELSEIISGSSVV 265 (265)
Q Consensus 240 ~~~yNk~RQ~~IT~El~EIv~Ga~al 265 (265)
+++|||+||++||+||+|||+||+||
T Consensus 264 ~~~yNr~RQ~~IT~Ei~EIvsGa~al 289 (291)
T PRK13424 264 TLLYNKTRQASITRELMDIVGGAEAL 289 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999986
No 5
>PRK13423 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=1.4e-75 Score=520.48 Aligned_cols=261 Identities=31% Similarity=0.527 Sum_probs=232.9
Q ss_pred CcchhhhhhhhhcccccCCccchhhHHHHHhhhhhhccccccccccccceeEEEEEEecCCccccccchhHHHHHHHhhh
Q psy2900 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTDKGLCGSINSNIFRILIKKIN 80 (265)
Q Consensus 1 mVAaaKlrka~~~~~~~r~Y~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~IvitSDrGLCG~fN~~v~k~~~~~i~ 80 (265)
|||+||+||+|+++.+.+||.+++.+++.++++......||++.+++ .++++||||||||||||+||++|+|.+.+.++
T Consensus 26 mvAaaklrka~~~~~~~~~y~~~i~~~~~~l~~~~~~~~~p~~~~~~-~~~~~~IvitSDrGLCG~fN~~i~k~~~~~i~ 104 (288)
T PRK13423 26 MVSAAKLRRAQENVVAARPYAAKLGEVLGSLAARAGEDAHPLLVPRE-VKKALLVVVTSDRGLCGGFNSNLCKAAERFLK 104 (288)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhccCcccCcccccCC-CceEEEEEEeCCCCCcchhhHHHHHHHHHHHH
Confidence 79999999999999999999999999999998642222377663322 56678999999999999999999999999998
Q ss_pred hhhccCCeeeEEEecccccccccccccccceeeeeecceeeehhhhHHHHHHHHhhhcccceeeeehhhHHHHhhhhhhh
Q psy2900 81 ELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKAT 160 (265)
Q Consensus 81 ~~~~~~~~~~l~~iG~K~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~d~v~ivy~~f~s~~~~~~~ 160 (265)
+.+..|+++.+++||+||.++|+++|.++...+.++++.|+|+.+..+++++++.|.++++|+|+|+||+|+|+++|+|.
T Consensus 105 ~~~~~~~~~~l~~vG~k~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~d~v~iiy~~f~n~~~q~~~ 184 (288)
T PRK13423 105 ENKDEFEEISLTTVGRKGREFLKNRGLIIRKNYGGVVANLTYETAALLAQELIEGYLAGEYDEVYLVYNEFKSVMSQDIT 184 (288)
T ss_pred HHHhcCCceEEEEecHHHHHHHHHcCCCceeeecCcCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEeccccccccccee
Confidence 76555667789999999999999888888888888888899999999999999999999999999999999999999999
Q ss_pred hhcccccCCceeeeeccccceeeEEEechhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhcccccchhhhhhHH
Q psy2900 161 ISKLLPFSDKYLTFPIKNKYSSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDELK 240 (265)
Q Consensus 161 ~~~llP~~~~~~~~~~~~~~~~~~~~ep~~~~~l~~l~~~yl~~~ly~al~es~asE~~aRm~AM~~At~Na~e~i~~L~ 240 (265)
+++|||+++... ......++|+|||+++++|++|+|.|+++.||+|++||++|||+|||+||++|||||+||+++|+
T Consensus 185 ~~~llP~~~~~~---~~~~~~~~~~~ep~~~~vl~~l~~~yl~~~ly~al~es~aSE~aaRm~AM~~At~Na~e~i~~L~ 261 (288)
T PRK13423 185 VQQLLPIDPPEA---ADDEYLPEYIYEPSRDALLAELLPKHVEVQIYRALLESVASEHGARMTAMDSATKNATEMIGKLT 261 (288)
T ss_pred EEEecCCCcccc---cccccccceeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999963211 11111235999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccchhhhHHHhhhccCCcCC
Q psy2900 241 LIYNKTRQATITKELSEIISGSSVV 265 (265)
Q Consensus 241 ~~yNk~RQ~~IT~El~EIv~Ga~al 265 (265)
++|||+||++||+||+|||+||+||
T Consensus 262 l~yNr~RQ~~IT~EL~EIvsGaeal 286 (288)
T PRK13423 262 LQYNRARQAAITTELMEIVSGAEAL 286 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999986
No 6
>PRK13425 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=1.8e-75 Score=520.25 Aligned_cols=261 Identities=30% Similarity=0.484 Sum_probs=231.4
Q ss_pred CcchhhhhhhhhcccccCCccchhhHHHHHhhhhhhccccccccccccceeEEEEEEecCCccccccchhHHHHHHHhhh
Q psy2900 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTDKGLCGSINSNIFRILIKKIN 80 (265)
Q Consensus 1 mVAaaKlrka~~~~~~~r~Y~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~IvitSDrGLCG~fN~~v~k~~~~~i~ 80 (265)
|||+||+||+|+++...+||++++.+++.++++......||++..++..++++|||||||||||||||++|+|.+.+.++
T Consensus 26 mVA~aklrka~~~~~~~~~Y~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ivitSDrGLCG~fN~~v~k~~~~~~~ 105 (291)
T PRK13425 26 MVAAAKLRRAQERAIMARPYAAKLKEMLGSLSAKVDTSLNPLLSPRSEVNKVLVILITSDRGLCGAFNTNIIKLAQKVIH 105 (291)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhccCcccCccccccccCccEEEEEEeCCCcccccchHHHHHHHHHHHH
Confidence 79999999999999999999999999999998642222377653222236678999999999999999999999999987
Q ss_pred hhhc---cCCeeeEEEecccccccccccccccceeeeeecceeeehhhhHHHHHHHHhhhcccceeeeehhhHHHHhhhh
Q psy2900 81 ELES---KGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQ 157 (265)
Q Consensus 81 ~~~~---~~~~~~l~~iG~K~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~d~v~ivy~~f~s~~~~ 157 (265)
++.. .+.++.+++||+||.++|+++|.++...+.++.+.|+|+.+..|++.+++.|.+|++|+|+|+||+|+|+++|
T Consensus 106 ~~~~~~~~~~~~~l~~iG~Kg~~~~~~~~~~i~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~d~v~viy~~f~~~~~~ 185 (291)
T PRK13425 106 EDYAALHAKGGVSMICAGTRGFDFFRKRGYNIVKGYPGVFQNLDFSVAKEIAETASGMYLRGEVDKVVVVYNEFKSVLAP 185 (291)
T ss_pred HhhhhhccCCceEEEEeeHHHHHHHHHcCCCceeeecCcCCCCCHHHHHHHHHHHHHHHHcCCCCEEEEEeccceeceee
Confidence 5432 3446789999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccccCCceeeeeccccceeeEEEechhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhcccccchhhhh
Q psy2900 158 KATISKLLPFSDKYLTFPIKNKYSSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIID 237 (265)
Q Consensus 158 ~~~~~~llP~~~~~~~~~~~~~~~~~~~~ep~~~~~l~~l~~~yl~~~ly~al~es~asE~~aRm~AM~~At~Na~e~i~ 237 (265)
+|.+++|||+++... ... ...+|.|||+++++|++|+|.|+++.||+|++||++|||+|||+||++|||||+||++
T Consensus 186 ~~~~~~llP~~~~~~---~~~-~~~~~~~eP~~~~il~~L~~~yl~~~ly~al~es~aSE~aaRm~AM~~At~Na~e~i~ 261 (291)
T PRK13425 186 NLKSEVLLPITPEKP---GAE-GGSDYIYEPSPAAIIDELVPKHLNTQVWRMMLESNAAEQAARMTAMDSATENAKELLR 261 (291)
T ss_pred eEEEEEeeCCCcccc---ccc-cCCCeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999963211 111 1125899999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhcccchhhhHHHhhhccCCcCC
Q psy2900 238 ELKLIYNKTRQATITKELSEIISGSSVV 265 (265)
Q Consensus 238 ~L~~~yNk~RQ~~IT~El~EIv~Ga~al 265 (265)
+|+++|||+||++||+||+|||+||+||
T Consensus 262 ~L~~~yNr~RQ~~IT~Ei~EIv~Ga~al 289 (291)
T PRK13425 262 TLNISYNRARQAAITKELSEIVAGADAL 289 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999986
No 7
>PRK13426 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=5.8e-75 Score=517.26 Aligned_cols=263 Identities=28% Similarity=0.456 Sum_probs=231.6
Q ss_pred CcchhhhhhhhhcccccCCccchhhHHHHHhhhhhhccccccccccccceeEEEEEEecCCccccccchhHHHHHHHhhh
Q psy2900 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTDKGLCGSINSNIFRILIKKIN 80 (265)
Q Consensus 1 mVAaaKlrka~~~~~~~r~Y~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~IvitSDrGLCG~fN~~v~k~~~~~i~ 80 (265)
|||+||+||+|+++.+.+||++++.++++++++..+...||++..++ .++++|||||||||||||||++|+|.+.++++
T Consensus 26 mVAasklrka~~~~~~~~~Y~~~l~~~l~~l~~~~~~~~~~~~~~~~-~~~~~~IvitSDrGLcG~fN~~v~~~~~~~~~ 104 (291)
T PRK13426 26 MVASAKLHKAQGAIENMLPYQRKLNHILTNFLSADLDVESPFTVERP-VKRVAIVVFSSNTSLCGGFNANIIKLLLQTIG 104 (291)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccCCCCCcccccCC-cceEEEEEEeCCCcccchhhHHHHHHHHHHHH
Confidence 79999999999999999999999999999998753233478763222 46678999999999999999999999999988
Q ss_pred hhhccC-CeeeEEEecccccccccccccccceeeeeecceeeehhhhHHHHHHHHhhhcccceeeeehhhHHHHhhhhhh
Q psy2900 81 ELESKG-NFIDFFVIGQKGLNFLNEINIKTKLCITQIGDILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKA 159 (265)
Q Consensus 81 ~~~~~~-~~~~l~~iG~K~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~d~v~ivy~~f~s~~~~~~ 159 (265)
+....+ .++.+++||+||.++|+++|.++...+.++.+.|+|+++..|++.+++.|.+|++|+|+|+||+|+|+++|+|
T Consensus 105 ~~~~~~~~~~~~~~vG~k~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~d~v~iiy~~f~s~~~q~~ 184 (291)
T PRK13426 105 EYRTLGQDNILIYPVGKKIEEAVKKLGFKVQGDYQTLADKPSYEEAAALAMRLMELFLEGEIDKVELIYHHFKSMGVQVL 184 (291)
T ss_pred HHhhcCCCceEEEEeeHHHHHHHHHcCCCceEeecccCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecccccccccce
Confidence 654333 4678999999999999988999999999988889999999999999999999999999999999999999999
Q ss_pred hhhcccccCCceeeeeccccce-eeEEEechhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhcccccchhhhhh
Q psy2900 160 TISKLLPFSDKYLTFPIKNKYS-SYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDE 238 (265)
Q Consensus 160 ~~~~llP~~~~~~~~~~~~~~~-~~~~~ep~~~~~l~~l~~~yl~~~ly~al~es~asE~~aRm~AM~~At~Na~e~i~~ 238 (265)
.+++|||++............. ++|+|||+++++|+.|+|.||++.||+||+||++|||+|||+||++|||||+||+++
T Consensus 185 ~~~~llPi~~~~~~~~~~~~~~~~~~~~Ep~~e~il~~L~~~yl~~~ly~alles~aSE~aaRm~AM~~At~Na~e~i~~ 264 (291)
T PRK13426 185 TRETYLPIDLSQEKNAEHAGGVANDYIIEPSADTVLNDLIPKLLSLKIYTALLDSNASEHAARMVAMQIATDNANELLQE 264 (291)
T ss_pred eEEEecCCCcccccccccccCCCCceEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999963211000011111 248999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccchhhhHHHhhhccCCcC
Q psy2900 239 LKLIYNKTRQATITKELSEIISGSSV 264 (265)
Q Consensus 239 L~~~yNk~RQ~~IT~El~EIv~Ga~a 264 (265)
|+++|||+||++||+||+||||||+|
T Consensus 265 L~~~yNr~RQ~~IT~El~EIvsGaea 290 (291)
T PRK13426 265 LTLQYNKSRQQAITNELLDIVGGSMA 290 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 99999999999999999999999997
No 8
>PRK13422 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=5.2e-75 Score=518.87 Aligned_cols=263 Identities=36% Similarity=0.564 Sum_probs=229.1
Q ss_pred CcchhhhhhhhhcccccCCccchhhHHHHHhhhhhhccccccccccccceeEEEEEEecCCccccccchhHHHHHHHhhh
Q psy2900 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTDKGLCGSINSNIFRILIKKIN 80 (265)
Q Consensus 1 mVAaaKlrka~~~~~~~r~Y~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~IvitSDrGLCG~fN~~v~k~~~~~i~ 80 (265)
|||+|||||||+++.+.+||++.+.+++.+++....+..||++..+ +.+++++||||||||||||||++|+|.+.+.++
T Consensus 26 mVAasKlrka~~~~~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~IvitSDrGLCG~fN~~v~k~~~~~~~ 104 (298)
T PRK13422 26 LVAASKMRGAIVKMNNVRPYVESANTIIKNVTAASIDYPNPYLFDR-DVKRVGYIVTSTDRGLCGGLNINLFKHVLKEIK 104 (298)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhcCCccCCcccccC-CCceEEEEEEeCCcccccchhHHHHHHHHHHHH
Confidence 8999999999999999999999999999998864212336766322 256678999999999999999999999999988
Q ss_pred hhhccCCeeeEEEecccccccccc-ccccccee--eeeecceeeehhhhHHHHHHHHhhhcccceeeeehhhHHHHhhhh
Q psy2900 81 ELESKGNFIDFFVIGQKGLNFLNE-INIKTKLC--ITQIGDILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQ 157 (265)
Q Consensus 81 ~~~~~~~~~~l~~iG~K~~~~~~~-~~~~i~~~--~~~~~~~~~~~~~~~i~~~l~~~~~~~~~d~v~ivy~~f~s~~~~ 157 (265)
+++..|.++.+++||+||.++|++ ++.++... +.++++.|+|+++..+++.+++.|.+|++|+|+|+||+|+|+++|
T Consensus 105 ~~~~~~~~~~l~~iG~K~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~d~v~iiy~~f~s~~~q 184 (298)
T PRK13422 105 NNIEDRVGVDVCVIGSKAENFFAKLKDVNIVATAHYNDKDKEGSIRAIGGAVKVMLDKFTAGEIDRLYMSSNQFVSTIKQ 184 (298)
T ss_pred HHHhCCCceEEEEEChhHHHHHHHhcCCCceeeeeeccCCCCCCHHHHHHHHHHHHHHHHcCCCCEEEEEeccccCCccc
Confidence 766566677899999999999985 56677776 555557899999999999999999999999999999999999999
Q ss_pred hhhhhcccccCCceeeeec-----ccc--ceeeEEEechhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhcccc
Q psy2900 158 KATISKLLPFSDKYLTFPI-----KNK--YSSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASE 230 (265)
Q Consensus 158 ~~~~~~llP~~~~~~~~~~-----~~~--~~~~~~~ep~~~~~l~~l~~~yl~~~ly~al~es~asE~~aRm~AM~~At~ 230 (265)
+|.+++|||+++ .+.... .+. ..++|+|||+++++|++|+|.||++.||+||+||++|||+|||+||++|||
T Consensus 185 ~~~~~~llP~~~-~~~~~~~~~~~~~~~~~~~~~~~ep~~~~il~~L~~~yl~~~ly~al~eS~aSE~aaRm~AM~~At~ 263 (298)
T PRK13422 185 RPRLQTLLPIQD-IFSAEEIKANKEKATKGHWDYIYERDIEEVLNALCIRYIEAQVRGAILENAACEQAARMMAMKNATD 263 (298)
T ss_pred ceEEEEeeCCCc-ccchhhhcccccccccCCCCeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999952 110000 011 234699999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhHHHhhhcccchhhhHHHhhhccCCcCC
Q psy2900 231 NADYIIDELKLIYNKTRQATITKELSEIISGSSVV 265 (265)
Q Consensus 231 Na~e~i~~L~~~yNk~RQ~~IT~El~EIv~Ga~al 265 (265)
||+||+++|+++|||+||++||+||+|||+||+|+
T Consensus 264 Na~eli~~L~l~yNr~RQa~IT~Ei~EIvsGaeA~ 298 (298)
T PRK13422 264 NASDIIDQLKLDYNKVRQAMITQELAEICSGAAAV 298 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Confidence 99999999999999999999999999999999985
No 9
>PRK14110 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=5.8e-75 Score=517.25 Aligned_cols=262 Identities=29% Similarity=0.475 Sum_probs=230.9
Q ss_pred CcchhhhhhhhhcccccCCccchhhHHHHHhhhhhhccccccccccccceeEEEEEEecCCccccccchhHHHHHHHhhh
Q psy2900 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTDKGLCGSINSNIFRILIKKIN 80 (265)
Q Consensus 1 mVAaaKlrka~~~~~~~r~Y~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~IvitSDrGLCG~fN~~v~k~~~~~i~ 80 (265)
|||+||+||+|+++.+.+||++++.+++.++++......||++..+ ..++.++||||||||||||||++|+|.++++++
T Consensus 28 mVAasklrkaq~~~~~~~~y~~~i~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~IvitSDrGLCG~fNs~vik~~~~~~~ 106 (291)
T PRK14110 28 VVSAAKLRKAQELLYASRPYSEKLYELISDLAAHIDRESHPLLERR-EEKNVDLVIITADRGLAGAFNSNVIKTAERLIQ 106 (291)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhccCCccCcccccC-ccceEEEEEEeCCCCccccccHHHHHHHHHHHH
Confidence 8999999999999999999999999999999875322237765322 246678999999999999999999999999998
Q ss_pred hhhccCCeeeEEEecccccccccccccccceeeeeecce-eeehhhhHHHHHHHHhhhcccceeeeehhhHHHHhhhhhh
Q psy2900 81 ELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDI-LYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKA 159 (265)
Q Consensus 81 ~~~~~~~~~~l~~iG~K~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~i~~~l~~~~~~~~~d~v~ivy~~f~s~~~~~~ 159 (265)
+++..|.++.+++||+||.++|++++.++...+.++.+. ++|+.+..+++.+++.|.+|++|+|+|+||+|+|+++|+|
T Consensus 107 ~~~~~~~~~~l~~iG~Kg~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~l~~~~~~~~~d~v~iiy~~f~s~~~~~~ 186 (291)
T PRK14110 107 EKQSEGVRVNLILIGRKGVQYFSKRGYNIIKSYEDVFRKEINFSVVKEVGGILASRYIEEETDAVYLINNEMITRATYKP 186 (291)
T ss_pred HHHhCCCceEEEEehHHHHHHHHHcCCCceeeeccccCCCCCHHHHHHHHHHHHHHHHcCCCCEEEEEecccccceeeeE
Confidence 765456677899999999999998888888888888765 4999999999999999999999999999999999999999
Q ss_pred hhhcccccCCceeeeeccccceeeEEEechhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhcccccchhhhhhH
Q psy2900 160 TISKLLPFSDKYLTFPIKNKYSSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDEL 239 (265)
Q Consensus 160 ~~~~llP~~~~~~~~~~~~~~~~~~~~ep~~~~~l~~l~~~yl~~~ly~al~es~asE~~aRm~AM~~At~Na~e~i~~L 239 (265)
.++++||+++... .........|.|||+++++|++|+|.||++.||+|++||++|||+|||+||++|||||+||+++|
T Consensus 187 ~~~~llP~~~~~~--~~~~~~~~~~~~ep~~~~vl~~L~~~yl~~~ly~al~es~aSE~aaRm~AM~~At~Na~e~i~~L 264 (291)
T PRK14110 187 KVRKFLPFEVEAQ--EKKLDELSVYNIEVSEEEFLDKLLQLYLNYQLYRALVESNAAEHFARMVAMDNATRNAGELIRKW 264 (291)
T ss_pred EEEEecCCCcccc--ccccCCCCCeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999963210 01001112489999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccchhhhHHHhhhccCCcCC
Q psy2900 240 KLIYNKTRQATITKELSEIISGSSVV 265 (265)
Q Consensus 240 ~~~yNk~RQ~~IT~El~EIv~Ga~al 265 (265)
+++|||+||++||+||+|||+||+||
T Consensus 265 ~l~yNr~RQ~~IT~Ei~EIv~Gaeal 290 (291)
T PRK14110 265 TLIFNKARQEAITTELIDIVNAAEAM 290 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999986
No 10
>PF00231 ATP-synt: ATP synthase This Pfam entry corresponds to chain g; InterPro: IPR000131 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. The ATPase F1 complex gamma subunit forms the central shaft that connects the F0 rotary motor to the F1 catalytic core. The gamma subunit functions as a rotary motor inside the cylinder formed by the alpha(3)beta(3) subunits in the F1 complex []. The best-conserved region of the gamma subunit is its C terminus, which seems to be essential for assembly and catalysis. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0045261 proton-transporting ATP synthase complex, catalytic core F(1); PDB: 3OFN_G 3FKS_P 3OEE_Y 2HLD_Y 3OEH_Y 2XOK_G 3ZRY_G 3OE7_P 2WPD_G 3OAA_e ....
Probab=100.00 E-value=4.8e-76 Score=525.11 Aligned_cols=265 Identities=35% Similarity=0.590 Sum_probs=231.6
Q ss_pred CcchhhhhhhhhcccccCCccchhhHHHHHhhhhhhccccccccccccceeEEEEEEecCCccccccchhHHHHHHHhhh
Q psy2900 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTDKGLCGSINSNIFRILIKKIN 80 (265)
Q Consensus 1 mVAaaKlrka~~~~~~~r~Y~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~IvitSDrGLCG~fN~~v~k~~~~~i~ 80 (265)
|||+||+||+++++.+.+||.+++.+++.++++...+..||++.+++..++++|||||||||||||||++|+|.+.++++
T Consensus 25 mvA~sklrk~~~~~~~~~~y~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ivitSDrGLCG~fN~~v~k~~~~~~~ 104 (290)
T PF00231_consen 25 MVAASKLRKAQKALEAARPYAETIEEILADLLSSISDYQHPLLKKREEVKKVLLIVITSDRGLCGGFNSNVIKAAESFIK 104 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHTTT--SSGS-----SCEEEEEE--STSSSTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccccCcccccccccceEEEEEEecCccccccccHHHHHHHHHHHh
Confidence 79999999999999999999999999999999876566788886554578999999999999999999999999999999
Q ss_pred hhhccCCeeeEEEecccccccccccccccceeeeeecceeeehhhhHHHHHHHHhhhcccceeeeehhhHHHHhhhhhhh
Q psy2900 81 ELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKAT 160 (265)
Q Consensus 81 ~~~~~~~~~~l~~iG~K~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~d~v~ivy~~f~s~~~~~~~ 160 (265)
+....|+++.+++||+||.++|+++|.++...+.++++.|+++++..|++.+++.|.+|++|+|+|+||+|+|+++|+|.
T Consensus 105 ~~~~~g~~~~l~~iG~K~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~d~v~viy~~~~~~~~~~~~ 184 (290)
T PF00231_consen 105 EKDDQGKEVKLIVIGKKGRDFLKKRGYNIIASFNGISSDPTFEEASEIAEKLIDLYESGEIDEVYVIYNKFKSAVSQEPV 184 (290)
T ss_dssp CSCTTTSEEEEEEESHHHHHHHHCSSTTEEEEEESBTSS--HHHHHHHHHHHHHHCCCCS-SEEEEEEEEECSTTEEEEE
T ss_pred hccccCCceEEEEeCcchhhhhhhCCCcceeeeecccchhhHHHHHHHHHHHHhhhhcCCCCeEEEEEEEeccceeeeEE
Confidence 98777788999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCCceee-eeccccceeeEEEechhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhcccccchhhhhhH
Q psy2900 161 ISKLLPFSDKYLT-FPIKNKYSSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDEL 239 (265)
Q Consensus 161 ~~~llP~~~~~~~-~~~~~~~~~~~~~ep~~~~~l~~l~~~yl~~~ly~al~es~asE~~aRm~AM~~At~Na~e~i~~L 239 (265)
+++|||+...... .........+|.|||+++++++.|+|.|+++.||+|++||++|||+|||+||++|||||+||+++|
T Consensus 185 ~~~llP~~~~~~~~~~~~~~~~~~~~~ep~~~~il~~L~~~yl~~~l~~al~eS~asE~~aR~~AM~~At~Na~e~i~~L 264 (290)
T PF00231_consen 185 VEQLLPLEKDIEQSSEEKWPKKSPYEFEPSPEEILDDLLPQYLFAQLYGALLESKASENAARMIAMENATDNAEELIDKL 264 (290)
T ss_dssp EEEESSS-----HHHHHTTTTGGGCCCSSTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeehhhhhccchhhccccccCCCceEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998311100 011222345789999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccchhhhHHHhhhccCCcCC
Q psy2900 240 KLIYNKTRQATITKELSEIISGSSVV 265 (265)
Q Consensus 240 ~~~yNk~RQ~~IT~El~EIv~Ga~al 265 (265)
+++|||+||++||+||+||||||+||
T Consensus 265 ~~~yNr~RQa~IT~Ei~EIvsGaeAl 290 (290)
T PF00231_consen 265 TLEYNRARQAEITQEIIEIVSGAEAL 290 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhhcC
Confidence 99999999999999999999999997
No 11
>TIGR01146 ATPsyn_F1gamma ATP synthase, F1 gamma subunit. This model describes the ATP synthase gamma subunit in bacteria and its equivalents in organelles, namely, mitochondria and chloroplast. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involed in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The gamma subunit is the part of F1 cluster. Surrounding the gamma subunit in a cylinder-like structure are three alpha and three subunits in an alternating fashion. This is the central catalytic unit whose different conformations permit the binding of ADP and inorganic phosphate and release of ATP.
Probab=100.00 E-value=4.5e-74 Score=511.27 Aligned_cols=262 Identities=36% Similarity=0.641 Sum_probs=232.6
Q ss_pred CcchhhhhhhhhcccccCCccchhhHHHHHhhhhhhccccccccccccceeEEEEEEecCCccccccchhHHHHHHHhhh
Q psy2900 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTDKGLCGSINSNIFRILIKKIN 80 (265)
Q Consensus 1 mVAaaKlrka~~~~~~~r~Y~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~IvitSDrGLCG~fN~~v~k~~~~~i~ 80 (265)
|||+||+||+|+++.+.+||++++.+++.++++..+...||++..++ .++.++||||||||||||||++|+|.+.+.++
T Consensus 26 mvA~sklrka~~~~~~~~~Y~~~i~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~ivitSDrGLCG~fN~~v~k~~~~~~~ 104 (287)
T TIGR01146 26 MVAASKLRRAQERAEAARPYAEKIRAVLGNLATKLLNYDHPLLKSRE-VKKVGILVITSDRGLCGGYNSNVLKRVRQRAK 104 (287)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhccCCCCCccccccc-cCeEEEEEEeCCCCccccccHHHHHHHHHHHH
Confidence 79999999999999999999999999999998753222367653222 46678999999999999999999999999998
Q ss_pred hhhccCCeeeEEEecccccccccccccccceeeeeecceeeehhhhHHHHHHHHhhhcccceeeeehhhHHHHhhhhhhh
Q psy2900 81 ELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKAT 160 (265)
Q Consensus 81 ~~~~~~~~~~l~~iG~K~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~d~v~ivy~~f~s~~~~~~~ 160 (265)
+....+.++.+++||+||.++|+++|.++...+.++++.|+|+.+..+++.+++.|.++++|+|+|+||+|+|+++|+|.
T Consensus 105 ~~~~~~~~~~l~~vG~k~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~d~v~viy~~f~~~~~~~~~ 184 (287)
T TIGR01146 105 ELKAAGKEVKLVVIGRKGKSFFKRRGDNIVLSITGLSDQPTFEEASGIADKLLDAFASGEFDEVYIVYNKFVSSISQEPT 184 (287)
T ss_pred HHhccCCceEEEEeeHHHHHHHHHcCCCeeEeecccCCCCCHHHHHHHHHHHHHHHHcCCCCEEEEEecccccceeeeEE
Confidence 76544556789999999999999888899999998888899999999999999999999999999999999999999999
Q ss_pred hhcccccCCceeeeeccccceeeEEEechhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhcccccchhhhhhHH
Q psy2900 161 ISKLLPFSDKYLTFPIKNKYSSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDELK 240 (265)
Q Consensus 161 ~~~llP~~~~~~~~~~~~~~~~~~~~ep~~~~~l~~l~~~yl~~~ly~al~es~asE~~aRm~AM~~At~Na~e~i~~L~ 240 (265)
++++||++..... ... ...++|.|||++++++++|+|.|+++.||+|++||++|||+|||+||++|||||+||+++|+
T Consensus 185 ~~~llP~~~~~~~-~~~-~~~~~~~~ep~~~~vl~~l~~~yl~~~ly~a~~es~asE~aaR~~AM~~At~Na~e~i~~L~ 262 (287)
T TIGR01146 185 VKQLLPLSEQGPD-EGF-KFGQDYIFEPDEEEILDDLLPRYLESQIYGALLESAASEQAARMTAMDNATDNAGDLIKKLT 262 (287)
T ss_pred EEEeeCCCccccc-ccc-cCCCCeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999631100 100 11245999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccchhhhHHHhhhccCCcCC
Q psy2900 241 LIYNKTRQATITKELSEIISGSSVV 265 (265)
Q Consensus 241 ~~yNk~RQ~~IT~El~EIv~Ga~al 265 (265)
++|||+||++||+||+|||+|++||
T Consensus 263 ~~yNr~RQ~~IT~El~EIvsGaeal 287 (287)
T TIGR01146 263 LSYNRARQAAITQELIEIVAGASAL 287 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999996
No 12
>PRK05621 F0F1 ATP synthase subunit gamma; Validated
Probab=100.00 E-value=6.6e-73 Score=503.24 Aligned_cols=259 Identities=40% Similarity=0.687 Sum_probs=233.2
Q ss_pred CcchhhhhhhhhcccccCCccchhhHHHHHhhhhhhccccccccccccceeEEEEEEecCCccccccchhHHHHHHHhhh
Q psy2900 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTDKGLCGSINSNIFRILIKKIN 80 (265)
Q Consensus 1 mVAaaKlrka~~~~~~~r~Y~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~IvitSDrGLCG~fN~~v~k~~~~~i~ 80 (265)
|||+||+||+|+++.+.+||.+++.+++.++++.. ...||++..+ ..++++||||||||||||+||++|+|.+.+.++
T Consensus 26 mvA~skl~k~~~~~~~~~~y~~~i~~~~~~l~~~~-~~~~~~~~~~-~~~~~~~ivitSd~GLCG~fN~~v~k~~~~~~~ 103 (284)
T PRK05621 26 MVAASKLRKAQERAEASRPYAEKIRKVISHLASAS-EYDHPLLVER-EVKRVGYIVVTSDRGLCGGYNSNIIKKVLELIK 103 (284)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhcC-CCCCcccccC-CCceEEEEEEeCCCcccchhhHHHHHHHHHHHH
Confidence 79999999999999999999999999999998753 1236766322 256778999999999999999999999999998
Q ss_pred hhhccCCeeeEEEecccccccccccccccceeeeeecceeeehhhhHHHHHHHHhhhcccceeeeehhhHHHHhhhhhhh
Q psy2900 81 ELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKAT 160 (265)
Q Consensus 81 ~~~~~~~~~~l~~iG~K~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~d~v~ivy~~f~s~~~~~~~ 160 (265)
+.+..|+++.+++||+||.++|+++|.++...+.++++.|+|+.+..+++.+++.|.+|++|+|+|+||+|+|+++|+|.
T Consensus 104 ~~~~~~~~~~l~~iG~k~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~i~viy~~f~~~~~~~~~ 183 (284)
T PRK05621 104 ELEAQGKEVKLIVIGRKGVDFFKRRGINVVAEYTGLGDQPTFEEAIGIAKKLLDAYDNGEFDELYIVYNKFVNTLSQEPT 183 (284)
T ss_pred HHHhcCCceEEEEehHHHHHHHHHcCCCceeeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCEEEEEecccccceecceE
Confidence 76555667789999999999999888888899999888899999999999999999999999999999999999999999
Q ss_pred hhcccccCCceeeeeccccceeeEEEechhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhcccccchhhhhhHH
Q psy2900 161 ISKLLPFSDKYLTFPIKNKYSSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDELK 240 (265)
Q Consensus 161 ~~~llP~~~~~~~~~~~~~~~~~~~~ep~~~~~l~~l~~~yl~~~ly~al~es~asE~~aRm~AM~~At~Na~e~i~~L~ 240 (265)
++++||++.... ... ....|.|||++++++++|+|.|+++.||+|++||++|||+|||+||++|||||+|++++|+
T Consensus 184 ~~~llP~~~~~~---~~~-~~~~~~~ep~~~~vl~~l~~~yl~~~l~~al~es~asE~aaR~~AM~~At~Na~e~i~~L~ 259 (284)
T PRK05621 184 VEQLLPLEKEEE---EEE-TSWDYEYEPDAEEILDALLPRYVESQIYQALLENKASEQAARMTAMKNATDNAGDLIKKLT 259 (284)
T ss_pred EEEeCCCCcccc---ccc-ccCCeeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999963211 100 1235899999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccchhhhHHHhhhccCCcCC
Q psy2900 241 LIYNKTRQATITKELSEIISGSSVV 265 (265)
Q Consensus 241 ~~yNk~RQ~~IT~El~EIv~Ga~al 265 (265)
++|||+||++||+||+|||+||+|+
T Consensus 260 ~~~Nr~RQ~~IT~El~EIvsGaeal 284 (284)
T PRK05621 260 LVYNRARQAAITQEITEIVGGAEAL 284 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999986
No 13
>TIGR03323 alt_F1F0_F1_gam alternate F1F0 ATPase, F1 subunit gamma. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 gamma subunit of this apparent second ATP synthase.
Probab=100.00 E-value=7.3e-73 Score=502.14 Aligned_cols=258 Identities=17% Similarity=0.278 Sum_probs=220.6
Q ss_pred CcchhhhhhhhhcccccCCccchhhHHHHHhhhhhh-ccccccccccccceeEEEEEEecCCccccccchhHHHHHHHhh
Q psy2900 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHF-ECRNLFFKKKNRIKRVAIILITTDKGLCGSINSNIFRILIKKI 79 (265)
Q Consensus 1 mVAaaKlrka~~~~~~~r~Y~~~i~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~IvitSDrGLCG~fN~~v~k~~~~~i 79 (265)
|||+||+||||+++.+.|||++++.+++.++++..+ ...||........++++|||||||||||||||++|+|.+.+.+
T Consensus 20 mVAasklrka~~~~~~~r~Y~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~IvitSDrGLCG~fN~~l~k~~~~~~ 99 (285)
T TIGR03323 20 ALAAVSIRQYEDAVRALDDYYRTVELGLAVCLRRIPLAALSPSGPNQKVSGHTGAIVFGSDQGLVGQFNEVILTFAAEEL 99 (285)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhCCCcccccccccccCCCcEEEEEEECCCcCchHhHHHHHHHHHHHH
Confidence 899999999999999999999999999999886422 1234441111124667899999999999999999999999998
Q ss_pred hhhhccCCeeeEEEecccccccccccccccceeeeeecceeeehhhhHHHHHHHHhhh----cccceeeeehhhHHHHhh
Q psy2900 80 NELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDILYFNKLTNLIKILVKDYK----NNLIDSIYIIYTKFINTL 155 (265)
Q Consensus 80 ~~~~~~~~~~~l~~iG~K~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~l~~~~~----~~~~d~v~ivy~~f~s~~ 155 (265)
++.. .++.+++||+||.++|+++|.++...+.++ +++.++..+++.+++.|. +|++|+|+|+||+|+|++
T Consensus 100 ~~~~---~~~~~~~iG~K~~~~~~~~~~~i~~~~~~~---~~~~~~~~i~~~i~~~~~~~~~~~~~d~v~iiY~~f~s~~ 173 (285)
T TIGR03323 100 ARLP---GEATIWAVGERVASRLEDSGLTIGELFRLP---NSVGAITPLVSELLIEVEARREQGQLAELYLFFNRPSSGG 173 (285)
T ss_pred Hhcc---CCeEEEEECHHHHHHHHHcCCCceEeecCc---CCHHHHHHHHHHHHHHHHhhhhcCCCcEEEEEecccccCc
Confidence 7642 256799999999999998888888777644 467778889999999996 899999999999999999
Q ss_pred hhhhhhhcccccCCceeeeecc--c-cceeeEEEechhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhcccccc
Q psy2900 156 QQKATISKLLPFSDKYLTFPIK--N-KYSSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENA 232 (265)
Q Consensus 156 ~~~~~~~~llP~~~~~~~~~~~--~-~~~~~~~~ep~~~~~l~~l~~~yl~~~ly~al~es~asE~~aRm~AM~~At~Na 232 (265)
+|+|.+++|||++..... ... . .....|+|||+++++|++|+|.|+++.||+||+||++|||+|||+||++|||||
T Consensus 174 ~~~~~~~~llP~~~~~~~-~~~~~~~~~~~~~~~ep~~~~il~~L~~~yl~~~ly~alles~asE~aaRm~AM~~At~Na 252 (285)
T TIGR03323 174 SYEPTCQRLLPLDETWQR-QLATQQWPTKCLPELMGEPEETFSALIREYLFVSLFRACAESLASENASRLAAMQRAEKNI 252 (285)
T ss_pred ccceeeEEeeCCCccccc-cccccccccCCCceecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999521110 100 1 011248999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHhhhcccchhhhHHHhhhccCCcCC
Q psy2900 233 DYIIDELKLIYNKTRQATITKELSEIISGSSVV 265 (265)
Q Consensus 233 ~e~i~~L~~~yNk~RQ~~IT~El~EIv~Ga~al 265 (265)
+||+++|+++|||+||++||+||+||||||+||
T Consensus 253 ~e~i~~L~~~yNr~RQa~IT~Ei~EIvsGaeal 285 (285)
T TIGR03323 253 DELLDDLNRRFHRLRQSAIDEELFDVVSGFEAL 285 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999996
No 14
>KOG1531|consensus
Probab=100.00 E-value=3.9e-63 Score=420.80 Aligned_cols=249 Identities=30% Similarity=0.450 Sum_probs=218.5
Q ss_pred CcchhhhhhhhhcccccCCccchhhHHHHHhhhhhhccccccccccccceeEEEEEEecCCccccccchhHHHHHHHhhh
Q psy2900 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTDKGLCGSINSNIFRILIKKIN 80 (265)
Q Consensus 1 mVAaaKlrka~~~~~~~r~Y~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~IvitSDrGLCG~fN~~v~k~~~~~i~ 80 (265)
||||+|++|||+++++.|||.++..+++.++ +..+|.... ...|+.++|++|||||||||+|+.|.|.++..++
T Consensus 53 mVAaaK~~rAer~~~~ar~~~~~~~~~~~~~-----d~~~p~~e~-~~~kK~~lV~vtsDrGLCGgihssi~K~~r~~l~ 126 (304)
T KOG1531|consen 53 MVAAAKYARAERALKAARPYGEGAVEFFKNI-----DIDVPLTEE-GEVKKVLLVAVTSDRGLCGGIHSSIAKKARRELN 126 (304)
T ss_pred HHHHHHHHHHHHHHhccCccchHHHHHHhhc-----cCCCCcccc-ccccceEEEEEecCCccccchhHHHHHHHHHHHH
Confidence 8999999999999999999999999999876 344565532 2378999999999999999999999999999999
Q ss_pred hhhccCCeeeEEEeccccccccccc-ccccceeeeeecc-eeeehhhhHHHHHHHHhhhcccceeeeehhhHHHHhhhhh
Q psy2900 81 ELESKGNFIDFFVIGQKGLNFLNEI-NIKTKLCITQIGD-ILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQK 158 (265)
Q Consensus 81 ~~~~~~~~~~l~~iG~K~~~~~~~~-~~~i~~~~~~~~~-~~~~~~~~~i~~~l~~~~~~~~~d~v~ivy~~f~s~~~~~ 158 (265)
+... ++++.+++||+|++.+|.+. +.++...+.+++. .|+|+++.-+++.+++.- ++||++.|+||+|+|.++++
T Consensus 127 ~~~~-~~e~~vv~iGdK~ra~l~R~~~~~i~ls~~eig~~pptf~~asvia~~il~~~--~e~d~~~ivyNkF~SvVs~e 203 (304)
T KOG1531|consen 127 DLKG-GKEVRVVIIGDKIRAILLRLHPNSILLSINEIGRAPPTFEDASVIADEILLSG--YEFDKGSIVYNKFKSVVSYE 203 (304)
T ss_pred hccC-CCceEEEEEchhhhhheeecCchhhhhhHhhcCCCCCcHHHHHHHHHHHHhhh--ccccceEEEeecchhheeec
Confidence 8764 77899999999999999876 5567788888875 489999999999988753 69999999999999999999
Q ss_pred hhhhcccccCCceeeeeccccceeeEEEechhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhcccccchhhhhh
Q psy2900 159 ATISKLLPFSDKYLTFPIKNKYSSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDE 238 (265)
Q Consensus 159 ~~~~~llP~~~~~~~~~~~~~~~~~~~~ep~~~~~l~~l~~~yl~~~ly~al~es~asE~~aRm~AM~~At~Na~e~i~~ 238 (265)
|...++||+.... .++. -..|.--.++++..+.|.||..+||++|.||.+||++|||+||+||++||.||+++
T Consensus 204 ~~~~~il~l~~i~---~s~~----l~~~d~iddev~q~~~e~~la~~I~~am~Es~~SE~saRm~AMdnaSkNAgemi~k 276 (304)
T KOG1531|consen 204 TSEKPILPLETIE---ESES----LSCYDSIDDEVLQSLMEYSLANQIYYAMKESATSELSARMNAMDNASKNAGEMIDK 276 (304)
T ss_pred cccccccCHHHhc---cccc----ccchhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCHHHHHHH
Confidence 9999999986321 1111 11244345889999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccchhhhHHHhhhccCCcCC
Q psy2900 239 LKLIYNKTRQATITKELSEIISGSSVV 265 (265)
Q Consensus 239 L~~~yNk~RQ~~IT~El~EIv~Ga~al 265 (265)
|++.|||+||+.||.||+|||+||+||
T Consensus 277 ltl~yNRtRQA~IT~ELieIisGA~al 303 (304)
T KOG1531|consen 277 LTLTYNRTRQAVITNELIEIISGASAL 303 (304)
T ss_pred HhhhhhhhcccchHHHHHHHHhhhhhc
Confidence 999999999999999999999999986
No 15
>PF00700 Flagellin_C: Bacterial flagellin C-terminal helical region; InterPro: IPR001029 Bacterial flagella are responsible for motility and chemotaxis []. They comprise a basal body, a hook and a filament, the latter accounting for 98% of the mass []. Flagellin is the subunit protein that polymerises to form the flagellae [], the subunits being transported through the centre of the filament to the tip, where they then polymerise []. Both the N- and C- termini of the subunit protein, which are alpha-helical in structure [], are required to mediate polymerisation. Although no export or assembly consensus sequences have been identified, Ala, Val, Leu, Ile, Gly, Ser, Thr, Asn, Gln and Asp tend to make up around 90% of the sequence, Cys and Trp being absent []. This entry represents the N and C termini that come together to form the D0 and D1 structural domains []. These domains are responsible for flagellin's ability to polymerise into a filament. ; GO: 0005198 structural molecule activity, 0001539 ciliary or flagellar motility, 0009288 bacterial-type flagellum; PDB: 1ORY_B 3V47_C 1IO1_A 1UCU_A 3A5X_A 3K8V_A 2ZBI_B 3K8W_A.
Probab=62.87 E-value=9.1 Score=27.22 Aligned_cols=49 Identities=10% Similarity=0.173 Sum_probs=45.0
Q ss_pred hhhhhHHHHHHHHhhhcccccchhhhhhHHHhhhcccchhhhHHHhhhc
Q psy2900 211 SENIASEQVSRMIAMKSASENADYIIDELKLIYNKTRQATITKELSEII 259 (265)
Q Consensus 211 ~es~asE~~aRm~AM~~At~Na~e~i~~L~~~yNk~RQ~~IT~El~EIv 259 (265)
+.+..++.++|+..++.+.++.......++-...+.+-.-+++++.+..
T Consensus 11 v~~~~a~lGa~~~~l~~~~~~~~~~~~~l~~~~s~i~d~D~a~~~~~l~ 59 (86)
T PF00700_consen 11 VSSARAQLGARQNRLESAKDRLSNQSENLTASLSNIEDADMAEAITNLT 59 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3467899999999999999999999999999999999999999998864
No 16
>PF14156 AbbA_antirepres: Antirepressor AbbA
Probab=61.03 E-value=48 Score=22.28 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=29.8
Q ss_pred hhhhHH-HHHHHHhhhcccccchhh-hhhHHHhhhcccch
Q psy2900 212 ENIASE-QVSRMIAMKSASENADYI-IDELKLIYNKTRQA 249 (265)
Q Consensus 212 es~asE-~~aRm~AM~~At~Na~e~-i~~L~~~yNk~RQ~ 249 (265)
+.+|+| .++-.+-.++-++|++++ .++|.+.|+|.|++
T Consensus 24 q~YA~Ells~El~DIE~G~K~vD~~~Yk~l~rLydRl~~E 63 (63)
T PF14156_consen 24 QNYASELLSSELNDIENGTKNVDESQYKQLLRLYDRLRNE 63 (63)
T ss_pred HHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHhcC
Confidence 455566 345567899999999976 68899999999975
No 17
>smart00216 VWD von Willebrand factor (vWF) type D domain. Von Willebrand factor contains several type D domains: D1 and D2 are present within the N-terminal propeptide whereas the remaining D domains are required for multimerisation.
Probab=54.74 E-value=4.3 Score=32.48 Aligned_cols=13 Identities=31% Similarity=0.739 Sum_probs=10.7
Q ss_pred cCCccccccchhH
Q psy2900 59 TDKGLCGSINSNI 71 (265)
Q Consensus 59 SDrGLCG~fN~~v 71 (265)
.=+||||.||.+-
T Consensus 141 ~~~GLCGn~ng~~ 153 (162)
T smart00216 141 KTCGLCGNFDGEP 153 (162)
T ss_pred CeeEccCCCCCCc
Confidence 4579999999874
No 18
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=54.22 E-value=6.3 Score=34.39 Aligned_cols=22 Identities=27% Similarity=0.167 Sum_probs=16.0
Q ss_pred EEecCCccccccchhHHHHHHH
Q psy2900 56 LITTDKGLCGSINSNIFRILIK 77 (265)
Q Consensus 56 vitSDrGLCG~fN~~v~k~~~~ 77 (265)
.+-||-|+||+||+-|--.-++
T Consensus 192 ayiTDvGMtG~~dSviG~~~e~ 213 (266)
T COG1692 192 AYITDVGMTGPYDSVIGMNPEE 213 (266)
T ss_pred EEEecCcccccccccccCChhH
Confidence 3459999999999987443333
No 19
>PRK04456 acetyl-CoA decarbonylase/synthase complex subunit beta; Reviewed
Probab=53.94 E-value=6.9 Score=36.84 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=18.6
Q ss_pred EEEEEecCC-ccccccchhHHHHHH
Q psy2900 53 AIILITTDK-GLCGSINSNIFRILI 76 (265)
Q Consensus 53 ~~IvitSDr-GLCG~fN~~v~k~~~ 76 (265)
-+-|||.|| ||||++|=-=.|++-
T Consensus 201 hVCvvtPeR~~lCGaisW~D~rAa~ 225 (463)
T PRK04456 201 HVCVITPDRPSLCGAINWFDGRAAA 225 (463)
T ss_pred eeEEECCCCcccccccchhhhhhhh
Confidence 356789998 999999976666654
No 20
>PF03598 CdhC: CO dehydrogenase/acetyl-CoA synthase complex beta subunit; InterPro: IPR004461 The carbon monoxide dehydrogenase alpha subunit (1.2.99.2 from EC) catalyses the interconversion of CO and CO2 and the synthesis of acteyl-coA from the methylated corrinoid/iron sulphur protein, CO and CoA. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.; GO: 0018492 carbon-monoxide dehydrogenase (acceptor) activity, 0006084 acetyl-CoA metabolic process; PDB: 2Z8Y_O 1MJG_N 3GIT_A 3S2X_B 3I01_O 3I04_N 1OAO_C 1RU3_A.
Probab=52.94 E-value=7 Score=36.35 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=16.4
Q ss_pred EEEEecCC-ccccccchhHHHHHHHh
Q psy2900 54 IILITTDK-GLCGSINSNIFRILIKK 78 (265)
Q Consensus 54 ~IvitSDr-GLCG~fN~~v~k~~~~~ 78 (265)
+=|||.|| ||||++|=-=.|+.-++
T Consensus 200 VCvvtPeR~~lCGaisWlDakAa~ei 225 (411)
T PF03598_consen 200 VCVVTPERPGLCGAISWLDAKAAYEI 225 (411)
T ss_dssp -EEEBTTB--TTSS--HHHHHHHHHH
T ss_pred eEEECCCCcccccccchhhhhhhhcc
Confidence 56789998 99999998777776543
No 21
>TIGR00316 cdhC CO dehydrogenase/CO-methylating acetyl-CoA synthase complex, beta subunit. Nomenclature follows the description for Methanosarcina thermophila. The CO-methylating acetyl-CoA synthase is considered the defining enzyme of the Wood-Ljungdahl pathway, used for acetate catabolism by sulfate reducing bacteria but for acetate biosynthesis by acetogenic bacteria such as oorella thermoacetica (f. Clostridium thermoaceticum).
Probab=52.08 E-value=7.7 Score=36.48 Aligned_cols=25 Identities=36% Similarity=0.549 Sum_probs=19.0
Q ss_pred EEEEEecCC-ccccccchhHHHHHHH
Q psy2900 53 AIILITTDK-GLCGSINSNIFRILIK 77 (265)
Q Consensus 53 ~~IvitSDr-GLCG~fN~~v~k~~~~ 77 (265)
-+-|||.|| ||||++|=-=.|++-+
T Consensus 198 HVCvvtPeR~~lCGaisW~D~rAa~~ 223 (458)
T TIGR00316 198 HVCIVTPDRPSLCGAINWFDARAAAK 223 (458)
T ss_pred eeEEECCCCcccccccchhhhhhhhh
Confidence 356789998 9999999766666543
No 22
>PF02870 Methyltransf_1N: 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain; InterPro: IPR008332 Synonym(s): 6-O-methylguanine-DNA methyltransferase, O-6-methylguanine-DNA-alkyltransferase The repair of DNA containing O6-alkylated guanine is carried out by DNA-[protein]-cysteine S-methyltransferase (2.1.1.63 from EC). The major mutagenic and carcinogenic effect of methylating agents in DNA is the formation of O6-alkylguanine. The alkyl group at the O-6 position is transferred to a cysteine residue in the enzyme []. This is a suicide reaction since the enzyme is irreversibly inactivated and the methylated protein accumulates as a dead-end product. Most, but not all of the methyltransferases are also able to repair O-4-methylthymine. DNA-[protein]-cysteine S-methyltransferases are widely distributed and are found in various prokaryotic and eukaryotic sources []. This group of proteins are characterised by having an N-terminal ribonuclease-like domain associated with 6-O-methylguanine DNA methyltransferase activity (IPR001497 from INTERPRO).; GO: 0003908 methylated-DNA-[protein]-cysteine S-methyltransferase activity, 0006281 DNA repair; PDB: 1SFE_A 1T39_B 1T38_A 1EH7_A 1EH6_A 1YFH_C 1EH8_A 1QNT_A.
Probab=51.22 E-value=9.5 Score=26.50 Aligned_cols=12 Identities=50% Similarity=1.262 Sum_probs=10.8
Q ss_pred EEEEecCCcccc
Q psy2900 54 IILITTDKGLCG 65 (265)
Q Consensus 54 ~IvitSDrGLCG 65 (265)
+.++++++||||
T Consensus 14 l~l~a~e~gL~~ 25 (77)
T PF02870_consen 14 LLLAASEKGLCG 25 (77)
T ss_dssp EEEEEETTCEEE
T ss_pred EEEEEECCeEEE
Confidence 678999999997
No 23
>PF00094 VWD: von Willebrand factor type D domain; InterPro: IPR001846 A family of growth regulators (originally called cef10, connective tissue growth factor, fisp-12, cyr61, or, alternatively, beta IG-M1 and beta IG-M2), all belong to immediate-early genes expressed after induction by growth factors or certain oncogenes. Sequence analysis of this family revealed the presence of four distinct modules. Each module has homologues in other extracellular mosaic proteins such as Von Willebrand factor, slit, thrombospondins, fibrillar collagens, IGF-binding proteins and mucins. Classification and analysis of these modules suggests the location of binding regions and, by analogy to better characterised modules in other proteins, sheds some light onto the structure of this new family []. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. One of the functions of von Willebrand factor (vWF) is to serve as a carrier of clotting factor VIII (FVIII). The native conformation of the D' domain of vWF is not only required for factor VIII (FVIII) binding but also for normal multimerisation and optimal secretion. The interaction between blood clotting factor VIII and VWF is necessary for normal survival of blood clotting factor VIII in blood circulation. The VWFD domain is a highly structured region, in which the first conserved Cys has been found to form a disulphide bridge with the second conserved one [].
Probab=50.18 E-value=6.2 Score=31.00 Aligned_cols=14 Identities=29% Similarity=0.660 Sum_probs=10.9
Q ss_pred ecCCccccccchhH
Q psy2900 58 TTDKGLCGSINSNI 71 (265)
Q Consensus 58 tSDrGLCG~fN~~v 71 (265)
+.=.||||.||.+-
T Consensus 136 g~t~GLCG~~dg~~ 149 (159)
T PF00094_consen 136 GKTCGLCGNFDGEP 149 (159)
T ss_pred cccccccCCCCCCc
Confidence 34469999999874
No 24
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=44.88 E-value=13 Score=26.68 Aligned_cols=36 Identities=33% Similarity=0.519 Sum_probs=25.2
Q ss_pred hhHHHHHHHhhhhhhccCCeeeEEEecccccccccc
Q psy2900 69 SNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNE 104 (265)
Q Consensus 69 ~~v~k~~~~~i~~~~~~~~~~~l~~iG~K~~~~~~~ 104 (265)
.+|+..++..+++++..|-++.++.+|...+.|++.
T Consensus 8 i~il~~ie~~inELk~dG~ePDivL~G~ef~e~~~~ 43 (85)
T PF08967_consen 8 IRILELIEEKINELKEDGFEPDIVLVGPEFYEFLSE 43 (85)
T ss_dssp HHHHHHHHHHHHHHHHTT----EEEE-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEcHHHHHHHHH
Confidence 356677777888888899999999999999999854
No 25
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=41.98 E-value=1.3e+02 Score=25.46 Aligned_cols=49 Identities=31% Similarity=0.518 Sum_probs=31.5
Q ss_pred EEEEEEecCCccccccchhHHHHHHHhhhhhhccCCeeeEEEecccccccccccc
Q psy2900 52 VAIILITTDKGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEIN 106 (265)
Q Consensus 52 ~~~IvitSDrGLCG~fN~~v~k~~~~~i~~~~~~~~~~~l~~iG~K~~~~~~~~~ 106 (265)
..+|+|-||-|. +.+ +.+++.+.+-...+.--.++.||+-...+|++..
T Consensus 105 P~~VlFiTDG~~----~~~--~~~~~~i~~as~~pifwqFVgiG~~~f~fL~kLD 153 (200)
T PF10138_consen 105 PALVLFITDGGP----DDR--RAIEKLIREASDEPIFWQFVGIGDSNFGFLEKLD 153 (200)
T ss_pred CeEEEEEecCCc----cch--HHHHHHHHhccCCCeeEEEEEecCCcchHHHHhh
Confidence 357888888664 333 4444444543333434567899999999998764
No 26
>PF07640 QPP: QPP; InterPro: IPR011507 These Rhodopirellula baltica proteins share a highly conserved sequence, centred around an invariant QPP motif, at their N termini. This motif may represent an export signal.
Probab=41.85 E-value=9.2 Score=22.91 Aligned_cols=11 Identities=55% Similarity=0.921 Sum_probs=8.2
Q ss_pred ccccchhHHHH
Q psy2900 64 CGSINSNIFRI 74 (265)
Q Consensus 64 CG~fN~~v~k~ 74 (265)
||+||.+=.+.
T Consensus 11 cGSiNQQp~~~ 21 (36)
T PF07640_consen 11 CGSINQQPVRA 21 (36)
T ss_pred ccccccCCCcc
Confidence 99999875443
No 27
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=40.29 E-value=80 Score=22.04 Aligned_cols=57 Identities=16% Similarity=0.072 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhcccccchhhhhhHHHhhhccc
Q psy2900 191 LVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDELKLIYNKTR 247 (265)
Q Consensus 191 ~~~l~~l~~~yl~~~ly~al~es~asE~~aRm~AM~~At~Na~e~i~~L~~~yNk~R 247 (265)
++++.-++.+=+++.|+-.|+=...=++.-|-.-++.=-++..++|++++-++|...
T Consensus 3 ~ei~k~~~sQG~fA~LFv~Ll~yvlK~~~~re~~~~~RE~kyq~~I~~lte~~~~~~ 59 (71)
T PF10960_consen 3 EEIIKLALSQGIFAVLFVWLLFYVLKENKKREEKQEEREEKYQEQIEKLTEKLNVIE 59 (71)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888888888888888888885555555556677788888888877654
No 28
>PRK09529 bifunctional acetyl-CoA decarbonylase/synthase complex subunit alpha/beta; Reviewed
Probab=38.80 E-value=16 Score=36.35 Aligned_cols=25 Identities=20% Similarity=0.490 Sum_probs=18.9
Q ss_pred EEEEEecCC-ccccccchhHHHHHHH
Q psy2900 53 AIILITTDK-GLCGSINSNIFRILIK 77 (265)
Q Consensus 53 ~~IvitSDr-GLCG~fN~~v~k~~~~ 77 (265)
-+=|||.|| ||||++|=-=.|++-+
T Consensus 499 hVCvvtPeR~~lCGaiswlD~kaa~e 524 (711)
T PRK09529 499 HVCVVTPERPGLCGAVSWLDAKAAYE 524 (711)
T ss_pred eeEEECCCCCccccccchhhhhhhhc
Confidence 356789998 9999999766666543
No 29
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=36.42 E-value=18 Score=31.96 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=19.3
Q ss_pred EEecCCccccccchhHHHHHHHhhhhh
Q psy2900 56 LITTDKGLCGSINSNIFRILIKKINEL 82 (265)
Q Consensus 56 vitSDrGLCG~fN~~v~k~~~~~i~~~ 82 (265)
..-||-|+||+|||=|=...+..++.+
T Consensus 193 ayitD~Gm~G~~~sviG~~~~~~i~~f 219 (266)
T TIGR00282 193 AYITDVGMTGPFGSVIGANPEQSIKLF 219 (266)
T ss_pred EEEecCCcccCcccCcccChHHHHHHH
Confidence 345899999999997755555555543
No 30
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=35.43 E-value=81 Score=24.46 Aligned_cols=42 Identities=19% Similarity=0.305 Sum_probs=26.2
Q ss_pred EEEEEecCCccccccchhHHHHHHHhhhhhhccCCeeeEEEeccccc
Q psy2900 53 AIILITTDKGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGL 99 (265)
Q Consensus 53 ~~IvitSDrGLCG~fN~~v~k~~~~~i~~~~~~~~~~~l~~iG~K~~ 99 (265)
..|++-|| |+.++.+..++ ......+. .+..+..+.||.-+.
T Consensus 96 ~~ivliTD-G~~~~~~~~~~-~~~~~~~~---~~~~v~~~~~g~~~~ 137 (152)
T cd01462 96 ADIVLITD-GYEGGVSDELL-REVELKRS---RVARFVALALGDHGN 137 (152)
T ss_pred ceEEEECC-CCCCCCCHHHH-HHHHHHHh---cCcEEEEEEecCCCC
Confidence 46777788 77888888876 32332222 244667778887433
No 31
>PF10307 DUF2410: Hypothetical protein (DUF2410); InterPro: IPR018812 This entry represents a family of proteins conserved in fungi whose function is not known. There are two characteristic sequence motifs, GGWW and TGR.
Probab=35.07 E-value=1e+02 Score=26.05 Aligned_cols=81 Identities=15% Similarity=0.226 Sum_probs=46.7
Q ss_pred ecCCccccccchhHHHHHHHhhhhhhccCCeeeEEEeccccccc-------ccccccccceeeeeecce-------eeeh
Q psy2900 58 TTDKGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNF-------LNEINIKTKLCITQIGDI-------LYFN 123 (265)
Q Consensus 58 tSDrGLCG~fN~~v~k~~~~~i~~~~~~~~~~~l~~iG~K~~~~-------~~~~~~~i~~~~~~~~~~-------~~~~ 123 (265)
.-.++--|-+|.+|++.++.-+++ ...+.++..|++=..| +...+.. |..+.=+ .|.+
T Consensus 46 ~~~~~w~gwWNe~Iv~la~~S~~~----~dtltVLLTGR~e~~F~~lI~~ml~s~~L~----Fd~v~LKp~~~~~~sTm~ 117 (197)
T PF10307_consen 46 EEKRAWEGWWNENIVELARLSMQD----PDTLTVLLTGRRESKFSSLIERMLASKGLE----FDAVCLKPENQRFSSTMD 117 (197)
T ss_pred cCcccccchhhHHHHHHHHHhhcC----CCeeEEEEeCCCchhHHHHHHHHHhcCCCC----ccEEEeCcccccCccccH
Confidence 345667789999999999876664 2256778899883222 1222222 2222111 2222
Q ss_pred hhhHHHHHHHHhhhcccceeeeehh
Q psy2900 124 KLTNLIKILVKDYKNNLIDSIYIIY 148 (265)
Q Consensus 124 ~~~~i~~~l~~~~~~~~~d~v~ivy 148 (265)
-=..+...+++.|. .+++|.|+=
T Consensus 118 fK~~~l~~ll~~Y~--~~~eI~IYe 140 (197)
T PF10307_consen 118 FKQAFLEDLLHTYK--NAEEIRIYE 140 (197)
T ss_pred HHHHHHHHHHHhcC--CCCEEEEEc
Confidence 22346667777664 677887753
No 32
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=31.71 E-value=96 Score=26.49 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=31.7
Q ss_pred EEEEEEecCCcccc-ccchhHHHHHHHhhhhhhccCCeeeEEEeccccccc
Q psy2900 52 VAIILITTDKGLCG-SINSNIFRILIKKINELESKGNFIDFFVIGQKGLNF 101 (265)
Q Consensus 52 ~~~IvitSDrGLCG-~fN~~v~k~~~~~i~~~~~~~~~~~l~~iG~K~~~~ 101 (265)
-.++++|.|=|++| .|....++.+.+.-+.....+.+..+.+.|.--.+-
T Consensus 130 D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~~en 180 (220)
T PRK08883 130 DLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKVDN 180 (220)
T ss_pred CeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCCHHH
Confidence 35789999999977 477777776665533322233345566777654433
No 33
>PF14599 zinc_ribbon_6: Zinc-ribbon; PDB: 2K2D_A.
Probab=30.57 E-value=15 Score=24.88 Aligned_cols=8 Identities=50% Similarity=0.970 Sum_probs=3.5
Q ss_pred cccccchh
Q psy2900 63 LCGSINSN 70 (265)
Q Consensus 63 LCG~fN~~ 70 (265)
-||+||+.
T Consensus 53 ~C~SYNT~ 60 (61)
T PF14599_consen 53 HCGSYNTR 60 (61)
T ss_dssp TTS---EE
T ss_pred CCCCcccC
Confidence 49999974
No 34
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=30.44 E-value=36 Score=29.46 Aligned_cols=50 Identities=10% Similarity=0.274 Sum_probs=31.7
Q ss_pred eEEEEEEecCCccccccchhHHHHHHHhhhhhhccCCeeeEEEeccccccccccccccc
Q psy2900 51 RVAIILITTDKGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEINIKT 109 (265)
Q Consensus 51 ~~~~IvitSDrGLCG~fN~~v~k~~~~~i~~~~~~~~~~~l~~iG~K~~~~~~~~~~~i 109 (265)
...||||||=.|. +...+.+.+.........+++||++-.+.+++.|+.+
T Consensus 55 ~~d~iifTS~naV---------~~~~~~l~~~~~~~~~~~~~aVG~~Ta~al~~~G~~~ 104 (255)
T PRK05752 55 RYCAVIVVSKPAA---------RLGLELLDRYWPQPPQQPWFSVGAATAAILQDYGLDV 104 (255)
T ss_pred CCCEEEEECHHHH---------HHHHHHHHhhCCCCcCCEEEEECHHHHHHHHHcCCCc
Confidence 4469999998874 3332222221101113579999999999998888643
No 35
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=29.34 E-value=14 Score=31.91 Aligned_cols=50 Identities=14% Similarity=0.057 Sum_probs=36.4
Q ss_pred EEEEEEecCCccccccchhHHHHHHHhhhhhhccCCeeeEEEeccccccccccccccc
Q psy2900 52 VAIILITTDKGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEINIKT 109 (265)
Q Consensus 52 ~~~IvitSDrGLCG~fN~~v~k~~~~~i~~~~~~~~~~~l~~iG~K~~~~~~~~~~~i 109 (265)
..||++||=.|.+.-|+.-...... . -.+..+++||.+-...+++.|+..
T Consensus 51 ~d~vvfTS~~av~~~~~~l~~~~~~-~-------~~~~~i~aVG~~Ta~~l~~~G~~~ 100 (248)
T COG1587 51 ADWVVFTSPNAVRFFFEALKEQGLD-A-------LKNKKIAAVGEKTAEALRKLGIKV 100 (248)
T ss_pred CCEEEEECHHHHHHHHHHHHhhccc-c-------cccCeEEEEcHHHHHHHHHhCCCC
Confidence 4799999999998876654333322 1 013579999999999999988654
No 36
>PF12209 SAC3: Leucine permease transcriptional regulator helical domain; InterPro: IPR024293 This domain is found in fungal proteins, including the nuclear mRNA export protein SAC3. It has been suggested this domain provides a scaffold within the yeast Sac3:Cdc31:Sus1:Thp1 (TREX-2) complex to integrate interactions between protein complexes to facilitate the coupling of transcription and mRNA export during gene expression [].; PDB: 3FWC_N 3FWB_B.
Probab=28.40 E-value=1.9e+02 Score=20.58 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q psy2900 191 LVLINKLFIRYIEALIYQSISENIASEQVSRMI 223 (265)
Q Consensus 191 ~~~l~~l~~~yl~~~ly~al~es~asE~~aRm~ 223 (265)
+.+-++|+.-|+.-.+|.+.+||+|-+..-|..
T Consensus 40 ~sLs~ELy~AFi~E~~Y~~~leskAd~~~~~~l 72 (79)
T PF12209_consen 40 DSLSEELYDAFIHEQLYQIYLESKADQFYNRNL 72 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677899999999999999999999887754
No 37
>COG1614 CdhC CO dehydrogenase/acetyl-CoA synthase beta subunit [Energy production and conversion]
Probab=27.88 E-value=33 Score=31.38 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=19.2
Q ss_pred EEEEEEecCC-ccccccchhHHHHHH
Q psy2900 52 VAIILITTDK-GLCGSINSNIFRILI 76 (265)
Q Consensus 52 ~~~IvitSDr-GLCG~fN~~v~k~~~ 76 (265)
+-+-|||.|| .|||+.|=-=.|++-
T Consensus 199 ThVCvvtPDRpsLCGaInw~D~rAAa 224 (470)
T COG1614 199 THVCVVTPDRPSLCGAINWFDARAAA 224 (470)
T ss_pred ceeEEecCCcccccccceeecchhhh
Confidence 3466889998 799999977666653
No 38
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=27.40 E-value=1.3e+02 Score=27.00 Aligned_cols=49 Identities=20% Similarity=0.245 Sum_probs=32.1
Q ss_pred eeEEEEEEecCCccccccchhHHHHHHHhhhhhhccCCeeeEEEeccccccccccc
Q psy2900 50 KRVAIILITTDKGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEI 105 (265)
Q Consensus 50 ~~~~~IvitSDrGLCG~fN~~v~k~~~~~i~~~~~~~~~~~l~~iG~K~~~~~~~~ 105 (265)
++++ |+++| |.|+.+-.+++.+++.+++ .|++..++.+|+=-.+.|...
T Consensus 210 ~~~G-Iiv~t---l~~q~~~~~~~~l~~~l~~---~gkk~y~~~~~~i~~~kL~nf 258 (307)
T PF01866_consen 210 KTFG-IIVGT---LGGQGYLELIKRLKKLLKK---AGKKSYTLSVGEINPAKLANF 258 (307)
T ss_dssp -EEE-EEEE----STTT--HHHHHHHHHHHHH---TT-EEEEEEESS--GGGGTTS
T ss_pred CEEE-EEEec---CCCCCCHHHHHHHHHHHHH---cCCEEEEEEECCCCHHHHhcC
Confidence 4444 44554 6788899999999999886 577888899998877776544
No 39
>PF04604 L_biotic_typeA: Type-A lantibiotic; InterPro: IPR007682 Lantibiotics are antibiotic peptides distinguished by the presence of the rare thioether amino acids lanthionine and/or methyllanthionine. They are produced by Gram-positive bacteria as gene-encoded precursor peptides and undergo post-translational modification to generate the mature peptide. Based on their structural and functional features lantibiotics are currently divided into two major groups: the flexible amphiphilic type-A and the rather rigid and globular type-B. Type-A lantibiotics act primarily by pore formation in the bacterial membrane by a mechanism involving the interaction with specific docking molecules such as the membrane precursor lipid II [].; GO: 0019748 secondary metabolic process, 0005576 extracellular region
Probab=26.43 E-value=33 Score=22.32 Aligned_cols=27 Identities=30% Similarity=0.490 Sum_probs=16.5
Q ss_pred hhcccccchhhhhhHHHhhhcccchhhhHHHhhhccCC
Q psy2900 225 MKSASENADYIIDELKLIYNKTRQATITKELSEIISGS 262 (265)
Q Consensus 225 M~~At~Na~e~i~~L~~~yNk~RQ~~IT~El~EIv~Ga 262 (265)
|++.+.++-+.+++++ -+||-.|++|+
T Consensus 1 M~n~~~ea~~~lqevs-----------~eELd~ilGg~ 27 (51)
T PF04604_consen 1 MKNSNMEALNSLQEVS-----------DEELDQILGGA 27 (51)
T ss_pred CcchHHHHHHHHHhcC-----------HHHHHHHhCCC
Confidence 5555554444444443 46899999984
No 40
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=26.31 E-value=93 Score=27.76 Aligned_cols=56 Identities=18% Similarity=0.272 Sum_probs=29.4
Q ss_pred EEEecCCccccccchhHHHHHHHhhhhhhccCCeeeEEEeccccc-----ccccccccccceeeeee
Q psy2900 55 ILITTDKGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGL-----NFLNEINIKTKLCITQI 116 (265)
Q Consensus 55 IvitSDrGLCG~fN~~v~k~~~~~i~~~~~~~~~~~l~~iG~K~~-----~~~~~~~~~i~~~~~~~ 116 (265)
|++..-+|||.|--.-| +.+.+.+++ .+ ..+++.|.-.+ +.|+++|..++....++
T Consensus 1 I~lA~~~GfC~GV~rAi-~~a~~~~~~---~~--~~vy~lG~iIHN~~vv~~L~~~Gv~~v~~~~~~ 61 (281)
T PF02401_consen 1 IILAKPAGFCFGVKRAI-EIAEEALEE---YP--GPVYTLGPIIHNPQVVERLEKRGVKVVDDIDEV 61 (281)
T ss_dssp EEE-TT-SS-HHHHHHH-HHHHHHCCC---HS--S-EEECS-SSS-HHHHHHHHHCTEEEESSGCGS
T ss_pred CEecCCCCcCccHHHHH-HHHHHHHHh---cC--CCEEEecCcccCHHHHHHHHHCCCEEecCcccc
Confidence 56778899999943222 222222222 11 26889998776 44677787776665544
No 41
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=26.27 E-value=52 Score=25.80 Aligned_cols=64 Identities=16% Similarity=0.171 Sum_probs=24.7
Q ss_pred CCeeeEEEeccccc-----------ccccccccccceeeeeecceeeehhhhHHHHHHHHhhhcccceeeeehhhHHHH
Q psy2900 86 GNFIDFFVIGQKGL-----------NFLNEINIKTKLCITQIGDILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFIN 153 (265)
Q Consensus 86 ~~~~~l~~iG~K~~-----------~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~d~v~ivy~~f~s 153 (265)
|....+++.|..+. +++...|++...-+.+.....|++.+.... .++ ....+.++.||=..|..
T Consensus 36 g~~~~il~SGg~~~~~~~~ea~~~~~~l~~~gvp~~~I~~e~~s~~T~ena~~~~-~~~---~~~~~~~iilVT~~~H~ 110 (155)
T PF02698_consen 36 GYAPRILFSGGYGHGDGRSEAEAMRDYLIELGVPEERIILEPKSTNTYENARFSK-RLL---KERGWQSIILVTSPYHM 110 (155)
T ss_dssp HHT--EEEE--SSTTHTS-HHHHHHHHHHHT---GGGEEEE----SHHHHHHHHH-HHH---HT-SSS-EEEE--CCCH
T ss_pred CCCCeEEECCCCCCCCCCCHHHHHHHHHHhcccchheeEccCCCCCHHHHHHHHH-HHH---HhhcCCeEEEECCHHHH
Confidence 33456888895544 333334543222222222345666665433 333 34455788888776653
No 42
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=25.91 E-value=35 Score=29.97 Aligned_cols=26 Identities=27% Similarity=0.179 Sum_probs=18.5
Q ss_pred EEecCCccccccchhHHHHHHHhhhh
Q psy2900 56 LITTDKGLCGSINSNIFRILIKKINE 81 (265)
Q Consensus 56 vitSDrGLCG~fN~~v~k~~~~~i~~ 81 (265)
.+-||=|+||+|++=|=-.-+..++.
T Consensus 190 a~itd~Gm~G~~~sviG~~~~~~i~~ 215 (255)
T cd07382 190 AYITDVGMTGPYDSVIGMKKEAVIER 215 (255)
T ss_pred EEEecCccccCCCcEeeeChHHHHHH
Confidence 46799999999998665444444444
No 43
>COG3377 Uncharacterized conserved protein [Function unknown]
Probab=25.69 E-value=75 Score=23.30 Aligned_cols=45 Identities=18% Similarity=0.362 Sum_probs=30.9
Q ss_pred eeEEEEEEecCCcc--ccccchhHHHHHHHhhhhhhccCCeeeEEEeccccccccccc
Q psy2900 50 KRVAIILITTDKGL--CGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEI 105 (265)
Q Consensus 50 ~~~~~IvitSDrGL--CG~fN~~v~k~~~~~i~~~~~~~~~~~l~~iG~K~~~~~~~~ 105 (265)
++.-++++.+++|. ||..|-....++ | +....++|=|..+-+.+-
T Consensus 22 ~napll~~~~ekgy~mCGyLnv~a~ek~----------g-d~A~rv~GVrt~ddml~A 68 (95)
T COG3377 22 PNAPLLALKGEKGYAMCGYLNVEAAEKV----------G-DTAVRVVGVRTFDDMLSA 68 (95)
T ss_pred CCCcEEEEEccccEEEecceeHHHHHhh----------c-ceeeEEEeeeeHHHHhcc
Confidence 34447899999996 999997754432 2 345667888877766443
No 44
>PF11513 TA0956: Thermoplasma acidophilum protein TA0956; InterPro: IPR021595 TA0956 is a protein from Thermoplasma acidophilum which currently has no known function however the structure has been determined. The protein has a two-layered alpha/beta-sandwich topology and is a putative Elongation factor 1-alpha binding motif. ; PDB: 2K24_A 2JMK_A.
Probab=24.89 E-value=2.1e+02 Score=21.12 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=30.3
Q ss_pred cceeEEEEEEecCCccc-cccc---hhHHHHHHHhhhhhhccCCe
Q psy2900 48 RIKRVAIILITTDKGLC-GSIN---SNIFRILIKKINELESKGNF 88 (265)
Q Consensus 48 ~~~~~~~IvitSDrGLC-G~fN---~~v~k~~~~~i~~~~~~~~~ 88 (265)
..|.++.|||.+|+-+- =+|. .|+-+.+++.++.++..|-.
T Consensus 61 EDKTvGFvviN~dKK~mSvsFsdideNmK~~i~ei~kkykd~Gyk 105 (110)
T PF11513_consen 61 EDKTVGFVVINKDKKMMSVSFSDIDENMKNSIEEIVKKYKDSGYK 105 (110)
T ss_dssp TSEEEEEEEEETTTTEEEEEE-S--CCHHHHHHHHHHHHHCCS-E
T ss_pred CCceeEEEEEecCCeEEEEEecchhHHHHHHHHHHHHHhhcCCce
Confidence 36889999999999874 3555 88877788877777766643
No 45
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=23.17 E-value=38 Score=29.73 Aligned_cols=25 Identities=28% Similarity=0.198 Sum_probs=13.9
Q ss_pred EecCCccccccchhHHHHHHHhhhh
Q psy2900 57 ITTDKGLCGSINSNIFRILIKKINE 81 (265)
Q Consensus 57 itSDrGLCG~fN~~v~k~~~~~i~~ 81 (265)
.-||-|+||+|++=|=-..+..++.
T Consensus 189 YiTDvGMtG~~dsViG~~~e~~i~r 213 (253)
T PF13277_consen 189 YITDVGMTGPYDSVIGMDPEEVIER 213 (253)
T ss_dssp EES---EBEESSSBTTB-HHHHHHH
T ss_pred EEecCccccCcccccccCHHHHHHH
Confidence 3499999999998765444444443
No 46
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=22.33 E-value=73 Score=27.13 Aligned_cols=46 Identities=15% Similarity=0.217 Sum_probs=29.2
Q ss_pred EEEEEecCCccccccchhHHHHHHHhhhhhhccCCeeeEEEecccccccccccccc
Q psy2900 53 AIILITTDKGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEINIK 108 (265)
Q Consensus 53 ~~IvitSDrGLCG~fN~~v~k~~~~~i~~~~~~~~~~~l~~iG~K~~~~~~~~~~~ 108 (265)
.+|+|||-.|.=. +.+...+... .....+++||.+-.+.+.+.|+.
T Consensus 50 d~iifTS~naV~~---------~~~~~~~~~~-~~~~~~~aVG~~Ta~~l~~~G~~ 95 (240)
T PRK09189 50 GAIAVTSAEAVRH---------LAALGERLLP-HLALPLFAVGEATAEAARELGFR 95 (240)
T ss_pred CEEEEECHHHHHH---------HHhcchhhHH-hcCCeEEEEcHHHHHHHHHcCCC
Confidence 5899999888622 1111111110 11356899999999999988865
No 47
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=21.76 E-value=27 Score=32.84 Aligned_cols=11 Identities=36% Similarity=0.703 Sum_probs=7.4
Q ss_pred CccccccchhH
Q psy2900 61 KGLCGSINSNI 71 (265)
Q Consensus 61 rGLCG~fN~~v 71 (265)
-|.|||||=+.
T Consensus 388 dG~~GGYNLq~ 398 (409)
T PF03486_consen 388 DGPCGGYNLQW 398 (409)
T ss_dssp EE-TTTHHHHH
T ss_pred ccCcCchhHhH
Confidence 38899999553
No 48
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=21.68 E-value=31 Score=32.11 Aligned_cols=11 Identities=9% Similarity=-0.003 Sum_probs=8.7
Q ss_pred CccccccchhH
Q psy2900 61 KGLCGSINSNI 71 (265)
Q Consensus 61 rGLCG~fN~~v 71 (265)
-|-|||||=+-
T Consensus 349 dG~~GGYNLq~ 359 (376)
T TIGR03862 349 EAPTGGYLLTA 359 (376)
T ss_pred ccCCCCHHHHH
Confidence 48999999653
No 49
>KOG2807|consensus
Probab=21.36 E-value=2.3e+02 Score=25.94 Aligned_cols=101 Identities=16% Similarity=0.196 Sum_probs=68.7
Q ss_pred eeEEEEEEe-----cCCccccccchhHHHHHHHhhhhhhccCC--eeeEEEeccccccccccccccc------ceeeeee
Q psy2900 50 KRVAIILIT-----TDKGLCGSINSNIFRILIKKINELESKGN--FIDFFVIGQKGLNFLNEINIKT------KLCITQI 116 (265)
Q Consensus 50 ~~~~~Ivit-----SDrGLCG~fN~~v~k~~~~~i~~~~~~~~--~~~l~~iG~K~~~~~~~~~~~i------~~~~~~~ 116 (265)
=|.++|||- .++-|==.+-.+++|.++.++.++-+++. ...++++-++.++.+...+-++ .......
T Consensus 60 iRhl~iviD~S~am~e~Df~P~r~a~~~K~le~Fv~eFFdQNPiSQigii~~k~g~A~~lt~ltgnp~~hI~aL~~~~~~ 139 (378)
T KOG2807|consen 60 IRHLYIVIDCSRAMEEKDFRPSRFANVIKYLEGFVPEFFDQNPISQIGIISIKDGKADRLTDLTGNPRIHIHALKGLTEC 139 (378)
T ss_pred heeEEEEEEhhhhhhhccCCchHHHHHHHHHHHHHHHHhccCchhheeEEEEecchhhHHHHhcCCHHHHHHHHhccccc
Confidence 356777774 35667778889999999999998776653 3457777777777776542222 1233344
Q ss_pred cceeeehhhhHHHHHHHHhhhcccceeeeehhhH
Q psy2900 117 GDILYFNKLTNLIKILVKDYKNNLIDSIYIIYTK 150 (265)
Q Consensus 117 ~~~~~~~~~~~i~~~l~~~~~~~~~d~v~ivy~~ 150 (265)
+..++...+.+++-+.++..-..--.+|-|||..
T Consensus 140 ~g~fSLqNaLe~a~~~Lk~~p~H~sREVLii~ss 173 (378)
T KOG2807|consen 140 SGDFSLQNALELAREVLKHMPGHVSREVLIIFSS 173 (378)
T ss_pred CCChHHHHHHHHHHHHhcCCCcccceEEEEEEee
Confidence 5668888888888887776534444778888853
No 50
>PRK08073 flgL flagellar hook-associated protein FlgL; Validated
Probab=21.10 E-value=1.1e+02 Score=26.99 Aligned_cols=49 Identities=10% Similarity=-0.001 Sum_probs=44.3
Q ss_pred hhhhhHHHHHHHHhhhcccccchhhhhhHHHhhhcccchhhhHHHhhhc
Q psy2900 211 SENIASEQVSRMIAMKSASENADYIIDELKLIYNKTRQATITKELSEII 259 (265)
Q Consensus 211 ~es~asE~~aRm~AM~~At~Na~e~i~~L~~~yNk~RQ~~IT~El~EIv 259 (265)
+....++.++|+.-|+.+.++.++..-.|+...++.+-..+.+++.|..
T Consensus 214 v~~~~a~~Ga~~nrle~~~~~~~~~~~~l~~~~s~i~d~D~a~a~~~l~ 262 (287)
T PRK08073 214 IINRTTEVGGTMNTVETFKTILSEQNLALQENRKEIEDVDLAVAISDLA 262 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 3446789999999999999999999999999999999999999988864
No 51
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=20.92 E-value=1.7e+02 Score=24.46 Aligned_cols=47 Identities=23% Similarity=0.292 Sum_probs=29.6
Q ss_pred EEEEEEecCCccccccchhHHHHHHHhhhhhhccCCeeeEEEeccccc
Q psy2900 52 VAIILITTDKGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGL 99 (265)
Q Consensus 52 ~~~IvitSDrGLCG~fN~~v~k~~~~~i~~~~~~~~~~~l~~iG~K~~ 99 (265)
.-+|+||-+.+-||+ |......+...++++...|.++.++.+|.-..
T Consensus 129 k~IvL~TDg~~p~~~-~~~~~~~~~~~a~~l~~~gI~i~~i~i~~~~~ 175 (218)
T cd01458 129 KRIFLFTNNDDPHGG-DSIKDSQAAVKAEDLKDKGIELELFPLSSPGK 175 (218)
T ss_pred cEEEEECCCCCCCCC-CHHHHHHHHHHHHHHHhCCcEEEEEecCCCCC
Confidence 458899998888884 33333445555566655566666666665543
No 52
>PRK09739 hypothetical protein; Provisional
Probab=20.27 E-value=1.9e+02 Score=23.80 Aligned_cols=40 Identities=8% Similarity=0.215 Sum_probs=29.3
Q ss_pred EEEEEEecCCccccccchhHHHHHHHhhhhhhccCCeeeEEEecc
Q psy2900 52 VAIILITTDKGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQ 96 (265)
Q Consensus 52 ~~~IvitSDrGLCG~fN~~v~k~~~~~i~~~~~~~~~~~l~~iG~ 96 (265)
..+++.+|-|. +|+|..+.+.+.+.+++ .|.++.++-+..
T Consensus 5 kiliI~~sp~~--~s~s~~l~~~~~~~~~~---~g~~v~~~dL~~ 44 (199)
T PRK09739 5 RIYLVWAHPRH--DSLTAKVAEAIHQRAQE---RGHQVEELDLYR 44 (199)
T ss_pred eEEEEEcCCCC--CCcHHHHHHHHHHHHHH---CCCEEEEEEhhh
Confidence 36788898887 89999999998887664 344565554444
No 53
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=20.22 E-value=58 Score=26.42 Aligned_cols=43 Identities=14% Similarity=0.219 Sum_probs=26.3
Q ss_pred ccccccccccccceeEEEEEEecCC-ccccccchhHHHHHHHhhh
Q psy2900 37 ECRNLFFKKKNRIKRVAIILITTDK-GLCGSINSNIFRILIKKIN 80 (265)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~IvitSDr-GLCG~fN~~v~k~~~~~i~ 80 (265)
+...|.+.-....++.+.+-..|.| ||| .|=..+++.+-+.+.
T Consensus 114 ~~~~P~f~~~~~~~~~l~l~Y~S~R~gl~-~~~~Gli~g~A~~f~ 157 (171)
T PF07700_consen 114 DAKPPSFRCEEEDDNELTLHYRSPRPGLC-PYVIGLIRGAAKHFF 157 (171)
T ss_dssp TSS--EEEEEEEETTEEEEEEEESSSSTH-HHHHHHHHHHHHHTT
T ss_pred CCcCCeEEEEECCCCEEEEEEECCCcCHH-HHHHHHHHHHHHHhC
Confidence 3344544322224567899999999 997 566666676665544
Done!