RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2900
(265 letters)
>gnl|CDD|235535 PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated.
Length = 284
Score = 283 bits (727), Expect = 4e-96
Identities = 104/265 (39%), Positives = 165/265 (62%), Gaps = 6/265 (2%)
Query: 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTD 60
MV+ASK+RK Q R A+RPY+ I+++I +L E + ++ +KRV I++T+D
Sbjct: 26 MVAASKLRKAQERAEASRPYAEKIRKVISHLASAS-EYDHPLLVERE-VKRVGYIVVTSD 83
Query: 61 KGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDIL 120
+GLCG NSNI + +++ I ELE++G + VIG+KG++F I T +GD
Sbjct: 84 RGLCGGYNSNIIKKVLELIKELEAQGKEVKLIVIGRKGVDFFKRRGINVVAEYTGLGDQP 143
Query: 121 YFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPIKNKY 180
F + + K L+ Y N D +YI+Y KF+NTL Q+ T+ +LLP + + +
Sbjct: 144 TFEEAIGIAKKLLDAYDNGEFDELYIVYNKFVNTLSQEPTVEQLLPLEKE----EEEEET 199
Query: 181 SSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDELK 240
S Y YE + +++ L RY+E+ IYQ++ EN ASEQ +RM AMK+A++NA +I +L
Sbjct: 200 SWDYEYEPDAEEILDALLPRYVESQIYQALLENKASEQAARMTAMKNATDNAGDLIKKLT 259
Query: 241 LIYNKTRQATITKELSEIISGSSVV 265
L+YN+ RQA IT+E++EI+ G+ +
Sbjct: 260 LVYNRARQAAITQEITEIVGGAEAL 284
>gnl|CDD|215808 pfam00231, ATP-synt, ATP synthase.
Length = 288
Score = 265 bits (679), Expect = 5e-89
Identities = 93/265 (35%), Positives = 160/265 (60%), Gaps = 1/265 (0%)
Query: 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTD 60
MV+ASK+RK Q R+ AARPY+ I+ ++ L + ++ +++ +K+V +I+IT+D
Sbjct: 25 MVAASKLRKAQERLEAARPYAEKIREVLAELAAASEDIKHPLLEQREVVKKVLLIVITSD 84
Query: 61 KGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDIL 120
+GLCG NSN+ + ++ I EL+++G +D VIG+KG +F T +GD
Sbjct: 85 RGLCGGFNSNVIKAALELIKELKAEGKEVDLIVIGKKGRDFFKRRGKNIIAEFTGLGDKP 144
Query: 121 YFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPIKNKY 180
F + + L++ + N D +Y++Y KF+N L Q+ T+ +LLP +
Sbjct: 145 TFEEAAEIADELIELFLNGEYDEVYLVYNKFVNALSQEPTVEQLLPIDIEEEEEEEAESR 204
Query: 181 SSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDELK 240
+ Y YE + +++ L RY+E+ +Y+++ E++ASE +RM AM +A++NA +I +L
Sbjct: 205 AD-YEYEPDAEEVLDALLPRYLESQLYRALLESLASEHAARMTAMDNATDNAKELIKKLT 263
Query: 241 LIYNKTRQATITKELSEIISGSSVV 265
L YN+ RQA IT+EL EI+SG+ +
Sbjct: 264 LQYNRARQAAITQELIEIVSGAEAL 288
>gnl|CDD|223302 COG0224, AtpG, F0F1-type ATP synthase, gamma subunit [Energy
production and conversion].
Length = 287
Score = 250 bits (640), Expect = 4e-83
Identities = 97/265 (36%), Positives = 154/265 (58%)
Query: 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTD 60
MV+ASK+RK Q R AARPY+ I++++ +L + E + K +KRV I+IT+D
Sbjct: 22 MVAASKLRKAQERAEAARPYAEKIRKVLGHLASANLELDHPLLKPTREVKRVLYIVITSD 81
Query: 61 KGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDIL 120
+GLCG NSNIF+ + I EL++KG + +IG+KG++F + T +GD
Sbjct: 82 RGLCGGFNSNIFKKVENLIKELKNKGKEVKLILIGKKGIDFFKKRGYNILESFTGLGDNP 141
Query: 121 YFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPIKNKY 180
F + + ++ + ID +Y++Y KF N L Q+ T+ +LLP +
Sbjct: 142 SFEEAIQIADKILDAFLEGEIDELYLVYNKFKNALSQEPTVQQLLPLDKIEDEAEEEEPG 201
Query: 181 SSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDELK 240
Y +E + ++ L RY+E+ +Y ++ E+ ASE +RM AMK+A++NA +I EL
Sbjct: 202 LWDYEFEPDAEEILETLLPRYLESQLYGALLESKASEHAARMTAMKNATDNAGDLIKELT 261
Query: 241 LIYNKTRQATITKELSEIISGSSVV 265
L+YNK RQA IT+EL EI+ G+ +
Sbjct: 262 LVYNKARQAAITQELIEIVGGAEAL 286
>gnl|CDD|213394 cd12151, F1-ATPase_gamma, mitochondrial ATP synthase gamma subunit.
The F-ATPase is found in bacterial plasma membranes,
mitochondrial inner membranes and in chloroplast
thylakoid membranes. It has also been found in the
archaea Methanosarcina barkeri. It uses a proton
gradient to drive ATP synthesis and hydrolyzes ATP to
build the proton gradient. The extrinisic membrane
domain of F-ATPases is composed of alpha, beta, gamma,
delta, and epsilon (not present in bacteria) subunits
with a stoichiometry of 3:3:1:1:1. Alpha and beta
subunit form the globular catalytic moiety, a hexameric
ring of alternating subunits. Gamma, delta and epsilon
subunits form a stalk, connecting F1 to F0, the integral
membrane proton translocating domain.
Length = 282
Score = 240 bits (615), Expect = 3e-79
Identities = 96/262 (36%), Positives = 159/262 (60%), Gaps = 4/262 (1%)
Query: 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTD 60
MV+A+K+RK Q + AARPY+ ++ ++ LL + + +K +K+V +I+IT+D
Sbjct: 25 MVAAAKLRKAQRALEAARPYAEKLEEVLQRLLS-SLDDEDPPLLEKREVKKVLLIVITSD 83
Query: 61 KGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDIL 120
+GLCG NSNI + + I E + G + V+G+KG ++L L + IGD
Sbjct: 84 RGLCGGFNSNIIKAAEELIKE--ADGKEVKLIVVGKKGRDYLKRRGYNIALPFSDIGDDP 141
Query: 121 YFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPIKNKY 180
+ + ++I+ L+ D+ N ID +YIIY KF + + Q+ + +LLP DK
Sbjct: 142 TYFEAASIIEELILDFLNGEIDEVYIIYNKFKSAISQEPVVEQLLPL-DKEEEEEESEGS 200
Query: 181 SSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDELK 240
S YI+E + +++ L Y+ +L+Y+++ E++ASEQ +RM AM +A++NA +ID+L
Sbjct: 201 RSDYIFEPDPEEVLDALLPFYLASLLYRALLESLASEQAARMTAMDNATDNAGELIDKLT 260
Query: 241 LIYNKTRQATITKELSEIISGS 262
L YN+ RQA IT+EL EI+SG+
Sbjct: 261 LEYNRARQAAITQELIEIVSGA 282
>gnl|CDD|233292 TIGR01146, ATPsyn_F1gamma, ATP synthase, F1 gamma subunit. This
model describes the ATP synthase gamma subunit in
bacteria and its equivalents in organelles, namely,
mitochondria and chloroplast. F1/F0-ATP synthase is a
multisubunit, membrane associated enzyme found in
bacteria and organelles of higher eukaryotes, namely,
mitochondria and chloroplast. This enzyme is principally
involed in the synthesis of ATP from ADP and inorganic
phosphate by coupling the energy derived from the proton
electrochemical gradient across the biological membrane.
A brief description of this multisubunit enzyme complex:
F1 and F0 represent two major clusters of subunits. The
gamma subunit is the part of F1 cluster. Surrounding the
gamma subunit in a cylinder-like structure are three
alpha and three subunits in an alternating fashion. This
is the central catalytic unit whose different
conformations permit the binding of ADP and inorganic
phosphate and release of ATP [Energy metabolism,
ATP-proton motive force interconversion].
Length = 286
Score = 228 bits (584), Expect = 1e-74
Identities = 94/263 (35%), Positives = 158/263 (60%), Gaps = 3/263 (1%)
Query: 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTD 60
MV+ASK+R+ Q R AARPY+ I+ ++ NL + K + +K+V I++IT+D
Sbjct: 25 MVAASKLRRAQERAEAARPYAEKIRAVLGNLASKLLNVDHPLLKSR-EVKKVGILVITSD 83
Query: 61 KGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDIL 120
+GLCG NSN+ + + + EL++ G + VIG+KG +F +T + D
Sbjct: 84 RGLCGGYNSNVLKRVRARAKELKAAGKEVKLVVIGRKGRSFFKRRGDNIVASVTGLSDQP 143
Query: 121 YFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPIKNKY 180
F + + + L+ + + D +YI+Y KF++ + Q+ T+ +LLP S++ K+
Sbjct: 144 TFEEASGIADKLLDAFDSGEFDEVYIVYNKFVSVISQEPTVKQLLPLSEQGPDE--GFKF 201
Query: 181 SSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDELK 240
S YI+E + +++ L RY+E+ IY ++ E+ ASEQ +RM AM +A++NA +I +L
Sbjct: 202 SQDYIFEPDEEEILDDLLPRYLESQIYGALLESAASEQAARMTAMDNATDNAGDLIKKLT 261
Query: 241 LIYNKTRQATITKELSEIISGSS 263
L YN+ RQA IT+EL EI++G+S
Sbjct: 262 LSYNRARQAAITQELIEIVAGAS 284
>gnl|CDD|184515 PRK14111, PRK14111, F0F1 ATP synthase subunit gamma; Provisional.
Length = 290
Score = 206 bits (526), Expect = 7e-66
Identities = 96/265 (36%), Positives = 154/265 (58%), Gaps = 6/265 (2%)
Query: 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNL--LQTHFECRNLFFKKKNRIKRVAIILIT 58
MVSASKMR+ Q + A RPY+ I+ ++ +L +K+ +KRVA+IL+T
Sbjct: 26 MVSASKMRRAQRNVLATRPYADRIRDVMGDLTARTVGAARVGPLLEKRPTVKRVALILVT 85
Query: 59 TDKGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGD 118
D+GL GS+N+N+ R I+ I + S G +D IG+KG +F+ T++GD
Sbjct: 86 PDRGLAGSLNANVLRRAIRFITDERSMGRTVDVIAIGRKGRDFMVRTGQALVAEFTRLGD 145
Query: 119 ILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPIKN 178
+ + + +++ D +Y++Y++FINTL Q+ TI +LLP I
Sbjct: 146 APKLEAILPVATSAINGFQSGKYDEVYVLYSEFINTLVQRPTIKQLLPIEPP----EIST 201
Query: 179 KYSSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDE 238
Y YE + ++ L R++E +YQ++ E+IASE +RM+AM++A++NA ++ +
Sbjct: 202 TTVVDYTYEPSPEEVLRALLPRFVEVQLYQAVLESIASEHSARMVAMRNATDNAKELVRD 261
Query: 239 LKLIYNKTRQATITKELSEIISGSS 263
L L YNK RQA ITKE+SEI SG++
Sbjct: 262 LTLTYNKARQAAITKEVSEIASGAA 286
>gnl|CDD|172049 PRK13427, PRK13427, F0F1 ATP synthase subunit gamma; Provisional.
Length = 289
Score = 166 bits (422), Expect = 2e-50
Identities = 80/263 (30%), Positives = 145/263 (55%), Gaps = 2/263 (0%)
Query: 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTD 60
MVS +K +K +R++AA PY+ IK ++ +L + + ++ +I+ VA+++IT +
Sbjct: 26 MVSTAKSKKATDRVNAAHPYANKIKELVSSLASLEGVVHSPYLRRPEKIRTVALLIITAN 85
Query: 61 KGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDIL 120
+GLCG NSN+ R+ +I EL+ KG ++ ++G+KG++F K + T I D
Sbjct: 86 RGLCGGFNSNLNRMAKARIAELKKKGVNVELHIVGKKGISFFKFAGEKAEKTYTHIDDKS 145
Query: 121 YFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPIKNKY 180
+ + L + ++ + N +D++ I T + + QK +++LP T +
Sbjct: 146 GYKEAEELANLFMERFANESVDAVEIASTVYYSAASQKPETTRVLPLEPP--TAAAEGSV 203
Query: 181 SSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDELK 240
+YE + ++ L ++ ++I E ASEQ++R IAMKSA++ A +I L
Sbjct: 204 QDDVVYEPSPEAILESLLPLVVKTAFLKAILEANASEQIARRIAMKSATDAASEMIKLLT 263
Query: 241 LIYNKTRQATITKELSEIISGSS 263
YN+ RQA IT+E+SEI+ G+
Sbjct: 264 RGYNRVRQAKITQEISEIVGGAD 286
>gnl|CDD|237384 PRK13423, PRK13423, F0F1 ATP synthase subunit gamma; Provisional.
Length = 288
Score = 162 bits (413), Expect = 5e-49
Identities = 83/265 (31%), Positives = 145/265 (54%), Gaps = 10/265 (3%)
Query: 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTD 60
MVSA+K+R+ Q + AARPY+ + ++ +L E + + K+ ++++T+D
Sbjct: 26 MVSAAKLRRAQENVVAARPYAAKLGEVLGSLAARAGEDAHPLLVPREV-KKALLVVVTSD 84
Query: 61 KGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDI- 119
+GLCG NSN+ + + + E + + I +G+KG FL + + G +
Sbjct: 85 RGLCGGFNSNLCKAAERFLKENKDEFEEISLTTVGRKGREFLKN---RGLIIRKNYGGVV 141
Query: 120 --LYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPIK 177
L + L + L++ Y D +Y++Y +F + + Q T+ +LLP
Sbjct: 142 ANLTYETAALLAQELIEGYLAGEYDEVYLVYNEFKSVMSQDITVQQLLPIDPPE---AAD 198
Query: 178 NKYSSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIID 237
++Y YIYE + L+ +L +++E IY+++ E++ASE +RM AM SA++NA +I
Sbjct: 199 DEYLPEYIYEPSRDALLAELLPKHVEVQIYRALLESVASEHGARMTAMDSATKNATEMIG 258
Query: 238 ELKLIYNKTRQATITKELSEIISGS 262
+L L YN+ RQA IT EL EI+SG+
Sbjct: 259 KLTLQYNRARQAAITTELMEIVSGA 283
>gnl|CDD|184046 PRK13422, PRK13422, F0F1 ATP synthase subunit gamma; Provisional.
Length = 298
Score = 160 bits (406), Expect = 6e-48
Identities = 104/275 (37%), Positives = 161/275 (58%), Gaps = 12/275 (4%)
Query: 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTD 60
+V+ASKMR +M+ RPY + II N+ + N + ++ +KRV I+ +TD
Sbjct: 26 LVAASKMRGAIVKMNNVRPYVESANTIIKNVTAASIDYPNPYLFDRD-VKRVGYIVTSTD 84
Query: 61 KGLCGSINSNIFRILIKKI-NELESKGNFIDFFVIGQKGLNF---LNEINIKTKLCITQI 116
+GLCG +N N+F+ ++K+I N +E + +D VIG K NF L ++NI
Sbjct: 85 RGLCGGLNINLFKHVLKEIKNNIEDRVG-VDVCVIGSKAENFFAKLKDVNIVATAHYNDK 143
Query: 117 GDILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPI 176
+ +K+++ + ID +Y+ +F++T++Q+ + LLP D + I
Sbjct: 144 DKEGSIRAIGGAVKVMLDKFTAGEIDRLYMSSNQFVSTIKQRPRLQTLLPIQDIFSAEEI 203
Query: 177 K-NKYSSY-----YIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASE 230
K NK + YIYE +I ++N L IRYIEA + +I EN A EQ +RM+AMK+A++
Sbjct: 204 KANKEKATKGHWDYIYERDIEEVLNALCIRYIEAQVRGAILENAACEQAARMMAMKNATD 263
Query: 231 NADYIIDELKLIYNKTRQATITKELSEIISGSSVV 265
NA IID+LKL YNK RQA IT+EL+EI SG++ V
Sbjct: 264 NASDIIDQLKLDYNKVRQAMITQELAEICSGAAAV 298
>gnl|CDD|172047 PRK13424, PRK13424, F0F1 ATP synthase subunit gamma; Provisional.
Length = 291
Score = 154 bits (391), Expect = 1e-45
Identities = 83/266 (31%), Positives = 145/266 (54%), Gaps = 9/266 (3%)
Query: 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTD 60
MV+++K+R Q R+ RPY+ ++ +L + + + IK I+LIT+D
Sbjct: 26 MVASAKLRGAQQRIERFRPYAEKFYDMLGDLASRADSSAHPLLEVREEIKTCGIVLITSD 85
Query: 61 KGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQ--IGD 118
+GLCGS N+N+ +K + ++G + F+ +G+KG + + KT I
Sbjct: 86 RGLCGSFNANLINAALKLAKQKTAEGKTVKFYCVGKKGRDAIR----KTDFEIVTAYADQ 141
Query: 119 ILYFN-KLTNLIKILVKD-YKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPI 176
+ F+ +L N I + V D Y +D + ++Y +F++ +Q ++LP + +
Sbjct: 142 MTSFDFQLANSIGLEVIDGYLTGELDEVVLVYGEFVSMARQLPITLQILPIAPEEAEEEE 201
Query: 177 KNKYSSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYII 236
S Y IYE ++ L+ +L R+I+ IY+ + + ASE +RM AM +A+ N D +I
Sbjct: 202 AGASSEY-IYEPSVEGLLAELLPRFIKVQIYRGLLDTSASEHAARMTAMDNATRNCDDMI 260
Query: 237 DELKLIYNKTRQATITKELSEIISGS 262
L L+YNKTRQA+IT+EL +I+ G+
Sbjct: 261 GSLTLLYNKTRQASITRELMDIVGGA 286
>gnl|CDD|139564 PRK13425, PRK13425, F0F1 ATP synthase subunit gamma; Provisional.
Length = 291
Score = 138 bits (350), Expect = 1e-39
Identities = 81/266 (30%), Positives = 142/266 (53%), Gaps = 9/266 (3%)
Query: 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTD 60
MV+A+K+R+ Q R ARPY+ +K ++ +L N ++ + +V +ILIT+D
Sbjct: 26 MVAAAKLRRAQERAIMARPYAAKLKEMLGSLSAKVDTSLNPLLSPRSEVNKVLVILITSD 85
Query: 61 KGLCGSINSNIFRILIKKINE----LESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQI 116
+GLCG+ N+NI ++ K I+E L +KG + G +G +F + +
Sbjct: 86 RGLCGAFNTNIIKLAQKVIHEDYAALHAKGG-VSMICAGTRGFDFFRKRGYNIVKGYPGV 144
Query: 117 GDILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPI 176
L F+ + + Y +D + ++Y +F + L LLP + +
Sbjct: 145 FQNLDFSVAKEIAETASGMYLRGEVDKVVVVYNEFKSVLAPNLKSEVLLPITPEKPG--- 201
Query: 177 KNKYSSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYII 236
+ S YIYE + +I++L +++ +++ + E+ A+EQ +RM AM SA+ENA ++
Sbjct: 202 -AEGGSDYIYEPSPAAIIDELVPKHLNTQVWRMMLESNAAEQAARMTAMDSATENAKELL 260
Query: 237 DELKLIYNKTRQATITKELSEIISGS 262
L + YN+ RQA ITKELSEI++G+
Sbjct: 261 RTLNISYNRARQAAITKELSEIVAGA 286
>gnl|CDD|184514 PRK14110, PRK14110, F0F1 ATP synthase subunit gamma; Provisional.
Length = 291
Score = 132 bits (334), Expect = 3e-37
Identities = 79/266 (29%), Positives = 144/266 (54%), Gaps = 10/266 (3%)
Query: 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTD 60
+VSA+K+RK Q ++A+RPYS + +I + L H + + ++ K V +++IT D
Sbjct: 28 VVSAAKLRKAQELLYASRPYSEKLYELI-SDLAAHIDRESHPLLERREEKNVDLVIITAD 86
Query: 61 KGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDI- 119
+GL G+ NSN+ + + I E +S+G ++ +IG+KG+ + ++ I D+
Sbjct: 87 RGLAGAFNSNVIKTAERLIQEKQSEGVRVNLILIGRKGVQYFSKRGYNI---IKSYEDVF 143
Query: 120 ---LYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPI 176
+ F+ + + IL Y D++Y+I + I K + K LPF +
Sbjct: 144 RKEINFSVVKEVGGILASRYIEEETDAVYLINNEMITRATYKPKVRKFLPF-EVEAQEKK 202
Query: 177 KNKYSSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYII 236
++ S Y I E + ++KL Y+ +Y+++ E+ A+E +RM+AM +A+ NA +I
Sbjct: 203 LDELSVYNI-EVSEEEFLDKLLQLYLNYQLYRALVESNAAEHFARMVAMDNATRNAGELI 261
Query: 237 DELKLIYNKTRQATITKELSEIISGS 262
+ LI+NK RQ IT EL +I++ +
Sbjct: 262 RKWTLIFNKARQEAITTELIDIVNAA 287
>gnl|CDD|237385 PRK13426, PRK13426, F0F1 ATP synthase subunit gamma; Provisional.
Length = 291
Score = 131 bits (331), Expect = 8e-37
Identities = 75/267 (28%), Positives = 137/267 (51%), Gaps = 9/267 (3%)
Query: 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTD 60
MV+++K+ K Q + PY + I+ N L + + F ++ +KRVAI++ +++
Sbjct: 26 MVASAKLHKAQGAIENMLPYQRKLNHILTNFLSADLDVESPFTVER-PVKRVAIVVFSSN 84
Query: 61 KGLCGSINSNIFRILIKKINELESKGNF-IDFFVIGQKGLNFLNEINIKTKLCITQIGDI 119
LCG N+NI ++L++ I E + G I + +G+K + ++ K + + D
Sbjct: 85 TSLCGGFNANIIKLLLQTIGEYRTLGQDNILIYPVGKKIEEAVKKLGFKVQGDYQTLADK 144
Query: 120 LYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPI--- 176
+ + L L++ + ID + +IY F + Q T LP L+
Sbjct: 145 PSYEEAAALAMRLMELFLEGEIDKVELIYHHFKSMGVQVLTRETYLPID---LSQEKNAE 201
Query: 177 -KNKYSSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYI 235
++ YI E + ++N L + + IY ++ ++ ASE +RM+AM+ A++NA+ +
Sbjct: 202 HAGGVANDYIIEPSADTVLNDLIPKLLSLKIYTALLDSNASEHAARMVAMQIATDNANEL 261
Query: 236 IDELKLIYNKTRQATITKELSEIISGS 262
+ EL L YNK+RQ IT EL +I+ GS
Sbjct: 262 LQELTLQYNKSRQQAITNELLDIVGGS 288
>gnl|CDD|211807 TIGR03323, alt_F1F0_F1_gam, alternate F1F0 ATPase, F1 subunit
gamma. A small number of taxonomically diverse
prokaryotic species, including Methanosarcina barkeri,
have what appears to be a second ATP synthase, in
addition to the normal F1F0 ATPase in bacteria and A1A0
ATPase in archaea. These enzymes use ion gradients to
synthesize ATP, and in principle may run in either
direction. This model represents the F1 gamma subunit of
this apparent second ATP synthase.
Length = 285
Score = 63.3 bits (154), Expect = 9e-12
Identities = 44/230 (19%), Positives = 100/230 (43%), Gaps = 27/230 (11%)
Query: 45 KKNRIKRVAIILITTDKGLCGSINSNIFRILIKKINELESK-----------GNFIDFFV 93
+K AI+ +D+GL G N I +++ L + D +
Sbjct: 66 QKVSGHTGAIV-FGSDQGLVGQFNEVILTFAAEELATLPGEATIWAVGERVASRLEDSGL 124
Query: 94 IGQKGLNFLNEINIKTKLCITQIGDILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFIN 153
+ N + T ++++ LI++ + + L + +Y+ + + +
Sbjct: 125 TIGELFRLPNSVGAITP-LVSEL-----------LIEVEARREQGQLAE-LYLFFNRPSS 171
Query: 154 TLQQKATISKLLPFSDKYLTFPIKNKYSSYYIYE--TNILVLINKLFIRYIEALIYQSIS 211
+ T +LLP + + ++ + + E + L Y+ ++++ +
Sbjct: 172 GGSYEPTCQRLLPLDETWQRQLATQQWPTKCLPELMGEPEETFSALIREYLFVSLFRACA 231
Query: 212 ENIASEQVSRMIAMKSASENADYIIDELKLIYNKTRQATITKELSEIISG 261
E++ASE SR+ AM+ A +N D ++D+L +++ RQ+ I +EL +++SG
Sbjct: 232 ESLASENASRLAAMQRAEKNIDELLDDLNRRFHRLRQSAIDEELFDVVSG 281
>gnl|CDD|238735 cd01458, vWA_ku, Ku70/Ku80 N-terminal domain. The Ku78 heterodimer
(composed of Ku70 and Ku80) contributes to genomic
integrity through its ability to bind DNA double-strand
breaks (DSB) in a preferred orientation. DSB's are
repaired by either homologues recombination or
non-homologues end joining and facilitate repair by the
non-homologous end-joining pathway (NHEJ). The Ku
heterodimer is required for accurate process that tends
to preserve the sequence at the junction. Ku78 is found
in all three kingdoms of life. However, only the
eukaryotic proteins have a vWA domain fused to them at
their N-termini. The vWA domain is not involved in DNA
binding but may very likey mediate Ku78's interactions
with other proteins. Members of this subgroup lack the
conserved MIDAS motif.
Length = 218
Score = 30.8 bits (70), Expect = 0.52
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Query: 38 CRNLF--FKKKNRIKRVAIILITTDKGLCGSINSNIFRILIKKINELESKGNFIDFFVIG 95
C +LF KKK KR I L T + G +S K +L+ KG ++ F +
Sbjct: 115 CLDLFSKGKKKKSHKR--IFLFTNNDDPHGG-DSIKDSQAAVKAEDLKDKGIELELFPLS 171
Query: 96 QKGLNFLNEINIKTKLCITQ 115
G F K + + +
Sbjct: 172 SPGKKFDVSKFYKDIIALVE 191
>gnl|CDD|163623 cd07380, MPP_CWF19_N, Schizosaccharomyces pombe CWF19 and related
proteins, N-terminal metallophosphatase domain. CWF19
cell cycle control protein (also known as CWF19-like 1
(CWF19L1) in Homo sapiens), N-terminal
metallophosphatase domain. CWF19 contains C-terminal
domains similar to that found in the CwfJ cell cycle
control protein. The metallophosphatase domain
belongs to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a
conserved domain with an active site consisting of two
metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and
acid sphingomyelinases (ASMases). The conserved domain
is a double beta-sheet sandwich with a di-metal active
site made up of residues located at the C-terminal side
of the sheets. This domain is thought to allow for
productive metal coordination.
Length = 150
Score = 28.0 bits (63), Expect = 2.9
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 64 CGSINSNIFRILIKKINELESK-GNFIDFFVIGQ 96
CG +N + L +K+N + K G F +G
Sbjct: 3 CGDVNGR-LKALFEKVNTINKKKGPFDALLCVGD 35
>gnl|CDD|227529 COG5202, COG5202, Predicted membrane protein [Function unknown].
Length = 512
Score = 28.8 bits (64), Expect = 3.0
Identities = 12/60 (20%), Positives = 24/60 (40%)
Query: 167 FSDKYLTFPIKNKYSSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMK 226
S T+ ++ Y S Y+ +V++ I + L + IS + ++ MK
Sbjct: 75 ASISLFTYLLRYFYRSAYMPTVLFIVILGHYKIFHAAQLFEERISTSFDITGSQMVLTMK 134
>gnl|CDD|237023 PRK11921, PRK11921, metallo-beta-lactamase/flavodoxin
domain-containing protein; Provisional.
Length = 394
Score = 28.9 bits (65), Expect = 3.2
Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 132 LVKDYKNNLIDSIYIIYTK-FINTLQQKATISKL 164
L+KD K LID+++ + K F+ L+++ + K+
Sbjct: 37 LIKDEKTVLIDTVWQPFAKEFVENLKKEIDLDKI 70
>gnl|CDD|224389 COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate
transport and metabolism].
Length = 397
Score = 28.5 bits (64), Expect = 3.4
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 189 NILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSAS 229
+I+++ N+L+ Y+ L +SE + V R++ +K
Sbjct: 275 DIVLVCNELYEAYLVVLELVGLSEARLDDAVRRILRVKFKL 315
>gnl|CDD|177730 PLN00116, PLN00116, translation elongation factor EF-2 subunit;
Provisional.
Length = 843
Score = 28.9 bits (65), Expect = 3.5
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 75 LIKKINELESKGNFIDFFVIGQKGLNFLNEI 105
L KKI + + V KG+ +LNEI
Sbjct: 630 LAKKIWCFGPETTGPNMVVDMCKGVQYLNEI 660
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 27.7 bits (62), Expect = 6.4
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 222 MIAMKSASENADYIIDELKLIYNKTRQATITKELSEIIS 260
MIA+ E I DE + QA + K L E+
Sbjct: 135 MIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173
>gnl|CDD|173034 PRK14570, PRK14570, D-alanyl-alanine synthetase A; Provisional.
Length = 364
Score = 27.5 bits (61), Expect = 8.9
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 89 IDFFVIGQKGLNFLNEINIKTKLCITQIGDILYFNKLTNLIKILVKDYKNNLIDSIYIIY 148
IDF + GL +LNEIN I DI F K+ + K +NLID + Y
Sbjct: 296 IDFLIEKDTGLIYLNEINT-----IPGFTDISMFAKMCEHDGLQYKSLVDNLIDLAFQSY 350
Query: 149 TK 150
K
Sbjct: 351 IK 352
>gnl|CDD|234483 TIGR04150, pseudo_rSAM_GG, pseudo-rSAM protein, GG-Bacteroidales
system. Many peptide-modifying radical SAM enzymes have
two 4Fe4S-binding regions, an N-terminal one recognized
by Pfam radical SAM domain-defining model pfam04055 and
a C-terminal one recognized by TIGR04085. Members of
this protein family occur in cassettes with such a
radical SAM family (TIGR04148) and with a peptide
modification target (TIGR04149). Surprisingly, members
of this family show full-length homology to each other,
with several scoring at least borderline hits to both
pfam04055 and TIGR04085, and yet differ in the
presence/absence of a signature CX(3)CX(2)CX(9)C motif.
Instead, members are best-conserved in the
TIGR04085-like C-terminal region. Therefore, this
protein family is designated a pseudo-radical-SAM
protein, which likely works in partnership with a
TIGR04148 family protein.
Length = 407
Score = 27.3 bits (61), Expect = 9.1
Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 27/134 (20%)
Query: 80 NELESKGNFIDFFVIGQKGLNFLNEINI-----------------KTKLCITQIGDILYF 122
++E F ++G+ LN L+EI I K LC T+ +L
Sbjct: 100 RDVERLKEFKKN-LLGENILNNLHEITIYLDGTCNSECPYCSTCYKQILCCTESNQVLSI 158
Query: 123 NKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPIKNKYSS 182
+KL +++ L N I I + F + + + +LL ++Y +
Sbjct: 159 DKLKSILDQL----SYNNIYRINL----FGGNIFKYPYLRELLSLLEQYS-GKKQIYLDY 209
Query: 183 YYIYETNILVLINK 196
YE+++ L+N
Sbjct: 210 KNFYESDLKKLLNN 223
>gnl|CDD|211385 cd11299, O-FucT_plant, GDP-fucose protein O-fucosyltransferase,
plant specific subfamily. Some members of this
plant-specific family of O-fucosyltransferases have been
annotated as auxin-independent growth promotors. The
function of the protein seems unclear.
O-fucosyltransferase-like proteins are GDP-fucose
dependent enzymes with similarities to the family 1
glycosyltransferases (GT1). They are soluble ER proteins
that may be proteolytically cleaved from a
membrane-associated preprotein, and are involved in the
O-fucosylation of protein substrates, the core
fucosylation of growth factor receptors, and other
processes.
Length = 290
Score = 27.1 bits (61), Expect = 9.1
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 6/56 (10%)
Query: 147 IYT--KFINTLQQKATISKLLP--FSDKYLTFPIKN--KYSSYYIYETNILVLINK 196
IY FI +L+ + K LP + K +K SS Y +L L+ K
Sbjct: 51 IYDVDHFIKSLKDDVRVVKKLPEELASKKPEITVKRVPSRSSPSYYLEEVLPLLKK 106
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.138 0.377
Gapped
Lambda K H
0.267 0.0680 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,056,403
Number of extensions: 1276820
Number of successful extensions: 1412
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1362
Number of HSP's successfully gapped: 120
Length of query: 265
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 170
Effective length of database: 6,723,972
Effective search space: 1143075240
Effective search space used: 1143075240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.2 bits)