RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2900
(265 letters)
>3oaa_G ATP synthase gamma chain; rossmann fold, hydrolase,
hydrolase-transport PROT complex; HET: ANP ADP; 3.26A
{Escherichia coli DH1}
Length = 286
Score = 288 bits (740), Expect = 2e-98
Identities = 103/261 (39%), Positives = 171/261 (65%), Gaps = 3/261 (1%)
Query: 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTD 60
MV+ASKMRK+Q+RM A+RPY+ ++++I +L + E ++ + + ++ +KRV ++++TD
Sbjct: 25 MVAASKMRKSQDRMAASRPYAETMRKVIGHLAHGNLEYKHPYLEDRD-VKRVGYLVVSTD 83
Query: 61 KGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDIL 120
+GLCG +N N+F+ L+ ++ KG D +IG KG++F N + +T +GD
Sbjct: 84 RGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIGSKGVSFFNSVGGNVVAQVTGMGDNP 143
Query: 121 YFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPIKNKY 180
++L +K++++ Y +D +YI+ KFINT+ Q TIS+LLP
Sbjct: 144 SLSELIGPVKVMLQAYDEGRLDKLYIVSNKFINTMSQVPTISQLLPLPASDDD--DLKHK 201
Query: 181 SSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDELK 240
S Y+YE + L++ L RY+E+ +YQ + EN+ASEQ +RM+AMK+A++N +I EL+
Sbjct: 202 SWDYLYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQ 261
Query: 241 LIYNKTRQATITKELSEIISG 261
L+YNK RQA+IT+EL+EI+SG
Sbjct: 262 LVYNKARQASITQELTEIVSG 282
>2qe7_G ATP synthase subunit gamma; blockage of ATP hydrolysis, F1-ATPase,
single analysis, thermoalkaliphilic, hydrolase; 3.06A
{Bacillus SP}
Length = 286
Score = 285 bits (731), Expect = 4e-97
Identities = 75/261 (28%), Positives = 142/261 (54%), Gaps = 5/261 (1%)
Query: 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTD 60
MV+A+K+R+ Q ARPY+ IK +I ++ + + + + +K+ ++IT+D
Sbjct: 26 MVAAAKLRRAQETAENARPYADKIKEVISSIAAGTKDFSHPMLEARP-VKKTGYMVITSD 84
Query: 61 KGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDIL 120
+GL G N+NI R++ K I E + F +G+KG +F + +T I D
Sbjct: 85 RGLAGPYNANILRLVSKTIEERHQSKDEYVIFAVGRKGRDFFKKRGYPVVEEVTGISDTP 144
Query: 121 YFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPIKNKY 180
++ ++ + + + + D + I Y +F++ + Q+ +LLP + + + +
Sbjct: 145 SLTEIQDIAQSAIGMFADETFDKLTIFYNEFVSPIVQRPVEKQLLPLTSEE----VLDGP 200
Query: 181 SSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDELK 240
S Y YE + ++ L +Y E LIY ++ + ASE +RM AM +A++NA +++ L
Sbjct: 201 VSAYEYEPDSESVLEVLLPKYAETLIYSALLDAKASEFGARMTAMGNATDNATEMLETLT 260
Query: 241 LIYNKTRQATITKELSEIISG 261
L +N+ RQA IT+E++EI++G
Sbjct: 261 LQFNRARQAAITQEIAEIVAG 281
>2xok_G ATP synthase subunit gamma, mitochondrial; hydrolase, ATP-binding,
F(O), F(1), mitochondr inner membrane, transmembrane;
HET: ANP; 3.01A {Saccharomyces cerevisiae}
Length = 311
Score = 252 bits (646), Expect = 7e-84
Identities = 63/265 (23%), Positives = 119/265 (44%), Gaps = 16/265 (6%)
Query: 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTD 60
+V+++++ K + +A+ + N + + + + I+ IT+D
Sbjct: 58 IVASTRLSKAEKAKISAKKMDEAEQLFYKNAETKNLD----VEATETGAPKELIVAITSD 113
Query: 61 KGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFL-NEINIKTKLCITQIG-D 118
KGLCGSI+S + + + + +N+ + D IG K L KL I IG D
Sbjct: 114 KGLCGSIHSQLAKAVRRHLNDQPN----ADIVTIGDKIKMQLLRTHPNNIKLSINGIGKD 169
Query: 119 ILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPIKN 178
F + + L+ K I I Y +++L + + + ++
Sbjct: 170 APTFQESALIADKLLSVMKAGTYPKISIFYNDPVSSLSFEPSEKPIFNAKT-----IEQS 224
Query: 179 KYSSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDE 238
+ +T+ V LF + + ++++ A+E +R AM +AS+NA +I+
Sbjct: 225 PSFGKFEIDTDANVP-RDLFEYTLANQMLTAMAQGYAAEISARRNAMDNASKNAGDMINR 283
Query: 239 LKLIYNKTRQATITKELSEIISGSS 263
++YN+TRQA IT EL +II+G+S
Sbjct: 284 YSILYNRTRQAVITNELVDIITGAS 308
>2ck3_G ATP synthase subunit gamma\, mitochondrial; hydrolase; HET: ANP
ADP; 1.9A {Bos taurus} SCOP: c.49.2.1 PDB: 1cow_G*
1bmf_G* 1e1q_G* 1e1r_G* 1efr_G* 1e79_G* 1h8h_G* 1nbm_G*
1ohh_G* 1qo1_G 1w0j_G* 1w0k_G* 1h8e_G* 2jiz_G* 2jj1_G*
2jj2_G* 2v7q_G* 2wss_G* 2xnd_G* 2w6j_G ...
Length = 272
Score = 251 bits (643), Expect = 7e-84
Identities = 66/263 (25%), Positives = 116/263 (44%), Gaps = 21/263 (7%)
Query: 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTD 60
MV+A+K + + + AR Y V + K K+ II +++D
Sbjct: 25 MVAAAKYARAERELKPARVYGVGSLALY----------EKADIKTPEDKKKHLIIGVSSD 74
Query: 61 KGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDIL 120
+GLCG+I+S++ + + + L + G + +G K + L+ + + ++
Sbjct: 75 RGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRSILH--RTHSDQFLVTFKEVG 132
Query: 121 YFNKLTNLIKILVKD--YKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPIKN 178
++ + D II+ +F + + K + +
Sbjct: 133 RRPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISYKTEEKPIFSL-------DTIS 185
Query: 179 KYSSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDE 238
S IY+ ++ + +IY S+ E+ SEQ +RM AM +AS+NA +ID+
Sbjct: 186 SAESMSIYDDIDADVLRNYQEYSLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDK 245
Query: 239 LKLIYNKTRQATITKELSEIISG 261
L L +N+TRQA ITKEL EIISG
Sbjct: 246 LTLTFNRTRQAVITKELIEIISG 268
>3oee_G ATP synthase subunit gamma; ATP phosphatase, F1F0 ATPase, ATP
synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A
{Saccharomyces cerevisiae} PDB: 2wpd_G* 3fks_G 2hld_G*
3oeh_G* 3ofn_G* 3zry_G* 3oe7_G*
Length = 278
Score = 251 bits (643), Expect = 8e-84
Identities = 63/265 (23%), Positives = 119/265 (44%), Gaps = 16/265 (6%)
Query: 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTD 60
+V+++++ K + +A+ + N + + + + I+ IT+D
Sbjct: 25 IVASTRLSKAEKAKISAKKMDEAEQLFYKNAETKNLD----VEATETGAPKELIVAITSD 80
Query: 61 KGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFL-NEINIKTKLCITQIG-D 118
KGLCGSI+S + + + + +N+ + D IG K L KL I IG D
Sbjct: 81 KGLCGSIHSQLAKAVRRHLNDQPN----ADIVTIGDKIKMQLLRTHPNNIKLSINGIGKD 136
Query: 119 ILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPIKN 178
F + + L+ K I I Y +++L + + + ++
Sbjct: 137 APTFQESALIADKLLSVMKAGTYPKISIFYNDPVSSLSFEPSEKPIFNAKT-----IEQS 191
Query: 179 KYSSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDE 238
+ +T+ V LF + + ++++ A+E +R AM +AS+NA +I+
Sbjct: 192 PSFGKFEIDTDANVP-RDLFEYTLANQMLTAMAQGYAAEISARRNAMDNASKNAGDMINR 250
Query: 239 LKLIYNKTRQATITKELSEIISGSS 263
++YN+TRQA IT EL +II+G+S
Sbjct: 251 YSILYNRTRQAVITNELVDIITGAS 275
>1fs0_G ATP synthase gamma subunit; coiled coil, epsilon, hydrolase; 2.10A
{Escherichia coli} SCOP: c.49.2.1
Length = 230
Score = 230 bits (590), Expect = 1e-76
Identities = 83/226 (36%), Positives = 141/226 (62%), Gaps = 3/226 (1%)
Query: 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTD 60
MV+ASKMRK+Q+RM A+RPY+ ++++I +L + E ++ + + ++ +KRV ++++TD
Sbjct: 8 MVAASKMRKSQDRMAASRPYAETMRKVIGHLAHGNLEYKHPYLEDRD-VKRVGYLVVSTD 66
Query: 61 KGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDIL 120
+GLCG +N N+F+ L+ ++ KG D +IG KG++F N + +T +GD
Sbjct: 67 RGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIGSKGVSFFNSVGGNVVAQVTGMGDNP 126
Query: 121 YFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPIKNKY 180
++L +K++++ Y +D +YI+ KFINT+ Q TIS+LLP
Sbjct: 127 SLSELIGPVKVMLQAYDEGRLDKLYIVSNKFINTMSQVPTISQLLPLPASDDD--DLKHK 184
Query: 181 SSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMK 226
S Y+YE + L++ L RY+E+ +YQ + EN+ASEQ +RM+AMK
Sbjct: 185 SWDYLYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMK 230
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 58.3 bits (140), Expect = 8e-10
Identities = 35/198 (17%), Positives = 71/198 (35%), Gaps = 46/198 (23%)
Query: 69 SNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEINIKTK-LCI-------TQIGDIL 120
+ I + + E + F V F +I T L + + + ++
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSV-------FPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 121 YFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATI-SKLLPFSDKY-------- 171
NKL ++ K K + I SI IY + L+ + + ++ D Y
Sbjct: 409 --NKLHKY-SLVEKQPKESTI-SIPSIYLELKVKLENEYALHRSIV---DHYNIPKTFDS 461
Query: 172 --LTFPIKNKYSSYYI-Y------ETNILVLINKLFI--RYIEA-LIYQSISENIASEQV 219
L P ++Y +I + + L +F+ R++E + + S + N + +
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521
Query: 220 SRMIAMKSASENADYIID 237
+ + +K YI D
Sbjct: 522 NTLQQLKFYK---PYICD 536
Score = 39.8 bits (92), Expect = 8e-04
Identities = 41/275 (14%), Positives = 90/275 (32%), Gaps = 43/275 (15%)
Query: 5 SKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRI---------KRVAII 55
+ + N Y+V+ + L+ L + + K +
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLK-LRQAL--LEL--RPAKNVLIDGVLGSGKTWVAL 168
Query: 56 LITTDKGLCGSINSNIFRILIKKINELESK-GNFIDFFVIGQKGLNFLNEINIKTKLCIT 114
+ + ++ IF + +K N E+ ++ + KL I
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 115 QIGDILYFNKLTNLIKILVKDYKNNLI--DSIYIIYTKFINTLQQKATISKLLPFSDKYL 172
I +L L+K K Y+N L+ ++ K N I LL K +
Sbjct: 229 SIQA-----ELRRLLKS--KPYENCLLVLLNVQ--NAKAWNAFNLSCKI--LLTTRFKQV 277
Query: 173 TFPIKNKYSSYYIYETNILVLINK----LFIRYIEALIYQSISENIASEQVS-RMIAMKS 227
T + +++ + + + L L ++Y++ Q + + + R +++ +
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD-CRPQDLPREVL--TTNPRRLSIIA 334
Query: 228 ASENADYIIDELKLIYNKTRQATITKELSEIISGS 262
S I + ++ + K L+ II S
Sbjct: 335 ES------IRDGLATWDNWKHVNCDK-LTTIIESS 362
Score = 27.9 bits (61), Expect = 5.1
Identities = 10/79 (12%), Positives = 27/79 (34%), Gaps = 9/79 (11%)
Query: 179 KYSSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDE 238
+Y I ++ + ++ + +S E++ +I K A +
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS----KEEIDHIIMSKDAVSGTLRLFWT 70
Query: 239 LKLIYNKTRQATITKELSE 257
L ++Q + ++ E
Sbjct: 71 L-----LSKQEEMVQKFVE 84
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.003
Identities = 39/242 (16%), Positives = 85/242 (35%), Gaps = 79/242 (32%)
Query: 15 HAARPYSVNIKRIICNLL---QTHFECRNL--FFKKKNRIKRVAIILITTDKGLCGS--I 67
++ RP +++ + LL + F L F K IL +G
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNK---------ILPEPTEGFAADDEP 54
Query: 68 NSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDILYFNKLTN 127
+ EL K F+ + ++ L E + Q +L
Sbjct: 55 TTPA---------ELVGK--FLGY-------VSSLVE-----PSKVGQFDQVL------- 84
Query: 128 LIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPIKNKY--SSYYI 185
+ + +++N + I+ L +KLL +D L +K K +Y
Sbjct: 85 --NLCLTEFENC------YLEGNDIHAL-----AAKLLQENDTTL---VKTKELIKNYI- 127
Query: 186 YETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAM---KSASENADYIIDELKLI 242
++ + F + + +++++ E A +++A+ + ++ DY +EL+ +
Sbjct: 128 ---TARIMAKRPFDKKSNSALFRAVGEGNA-----QLVAIFGGQGNTD--DYF-EELRDL 176
Query: 243 YN 244
Y
Sbjct: 177 YQ 178
>2p4v_A Transcription elongation factor GREB; transcript cleavage,
GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Length = 158
Score = 28.6 bits (65), Expect = 1.1
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 10/40 (25%)
Query: 229 SENADYIIDELKLIYNKTRQATI---TKELSEIISGSSVV 265
SENADY YNK R I + L++ + +V
Sbjct: 43 SENADY-------QYNKKRLREIDRRVRYLTKCMENLKIV 75
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease,
SH3-binding, thiol protease, UBL conjugation pathway,
structural genomics; 2.10A {Homo sapiens} SCOP:
a.118.23.1
Length = 144
Score = 27.0 bits (59), Expect = 3.9
Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 3/121 (2%)
Query: 102 LNEINIKTKLCITQIGDILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATI 161
L ++N KT++ +I Y + + K + + + Y++Y K++ I
Sbjct: 19 LKDLNKKTEVKPEKISTKSYVHSALKIFKTAEECRLDRDEERAYVLYMKYVTVYN---LI 75
Query: 162 SKLLPFSDKYLTFPIKNKYSSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSR 221
K F + F + L L +RY EA + + + E E+ R
Sbjct: 76 KKRPDFKQQQDYFHSILGPGNIKKAVEEAERLSESLKLRYEEAEVRKKLEEKDRQEEAQR 135
Query: 222 M 222
+
Sbjct: 136 L 136
>2ab5_A MRNA maturase; laglidadg endonuclease, group I intron splicing, RNA
binding, protein binding; 2.20A {Saccharomyces
cerevisiae}
Length = 269
Score = 27.3 bits (60), Expect = 4.4
Identities = 19/183 (10%), Positives = 52/183 (28%), Gaps = 14/183 (7%)
Query: 20 YSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTDKGLCGSINSNIFRILIKKI 79
++V K + N++ F + K L+ K
Sbjct: 85 FNVRNKNHLKNIIIPIFNKYPMLTNKHYDYLYFKDNLLKDIKYYNDLSYYLRPIKPFNTT 144
Query: 80 NELESKGNFIDFFVIGQKG------LNFLNEINIKTKLCITQIGDILYFNKLTNLIKILV 133
++ +K F + + + +N+ ++ ++ + + +KI
Sbjct: 145 EDILNKNYFSSWLIGFFEAKSCFSIYKPMNKKMKTASFEVSMNNNMEVMLAIKSYLKINN 204
Query: 134 KDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPIKNKYSSYYIYETNILVL 193
Y N +S + I ++ F + + K Y ++ ++ +
Sbjct: 205 NIYMNEFNNSKMTTKSI--------NDIKNVVMFINNNPIKLLGYKKLQYLLFLKDLRTI 256
Query: 194 INK 196
Sbjct: 257 TKY 259
>1t6u_A Superoxide dismutase [NI]; nickel, 4-helix bundle, hexamer, nisod,
SOD, high resolution, oxidoreductase; 1.30A
{Streptomyces coelicolor} SCOP: a.24.22.1 PDB: 1t6q_A
1t6i_A 3g4z_A 3g4x_A 3g50_A 1q0g_A 1q0f_A 1q0d_A 1q0k_A
1q0m_A
Length = 117
Score = 25.8 bits (56), Expect = 8.1
Identities = 7/56 (12%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 206 IYQSISENIASEQVSRMIAMKSASENADYIIDELKLIYNKTRQATITKELSEIISG 261
+Y I +E V + + +++ + + K ++A + K ++
Sbjct: 8 VYDPAQARIEAESVKAVQEKMAGNDDPHFQT---RATVIKEQRAELAKHHVSVLWS 60
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase;
HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Length = 139
Score = 26.1 bits (58), Expect = 8.3
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 238 ELKLIYNKTRQATIT 252
EL ++YN TR AT+
Sbjct: 95 ELAILYNCTRTATVK 109
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit;
beta-barrel, CAMP-binding, catalytic subunit,
transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B*
3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Length = 154
Score = 26.2 bits (58), Expect = 9.0
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 238 ELKLIYNKTRQATIT 252
EL LIY R AT+
Sbjct: 110 ELALIYGTPRAATVK 124
>2qoj_Z Intron-encoded DNA endonuclease I-ANII; laglidadg homing
endonuclease, hydrolase, intron homing, mitochondrion,
mRNA processing, mRNA splicing; 2.40A {Emericella
nidulans} PDB: 1p8k_Z 3eh8_A 3uvf_A
Length = 254
Score = 26.5 bits (58), Expect = 9.4
Identities = 22/184 (11%), Positives = 54/184 (29%), Gaps = 15/184 (8%)
Query: 20 YSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIIL---ITTDKGLCGSINSNIFRILI 76
+ K + + + FE +F K+ R L I + + L S+ I
Sbjct: 69 LRIRDKNHLKSFILPIFEKYPMFSNKQYDYLRFRNALLSGIISLEDLPDYTRSDEPLNSI 128
Query: 77 KKINELESKGNFIDFFVIGQKGLNFLNEIN----IKTKLCITQIGDILYFNKLTNLIKIL 132
+ I ++ F+ + + + I Q + + + +
Sbjct: 129 ESIINTSYFSAWLVGFIEAEGCFSVYKLNKDDDYLIASFDIAQRDGDILISAIRKYLSFT 188
Query: 133 VKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPIKNKYSSYYIYETNILV 192
K Y + S + + ++ ++ F + NK Y ++ +
Sbjct: 189 TKVYLDKTNCSKLKVTSV--------RSVENIIKFLQNAPVKLLGNKKLQYLLWLKQLRK 240
Query: 193 LINK 196
+
Sbjct: 241 ISRY 244
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.377
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,758,446
Number of extensions: 217959
Number of successful extensions: 439
Number of sequences better than 10.0: 1
Number of HSP's gapped: 413
Number of HSP's successfully gapped: 46
Length of query: 265
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 173
Effective length of database: 4,133,061
Effective search space: 715019553
Effective search space used: 715019553
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.3 bits)