RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2900
         (265 letters)



>d1fs0g_ c.49.2.1 (G:) ATP synthase (F1-ATPase), gamma subunit
           {Escherichia coli [TaxId: 562]}
          Length = 230

 Score =  149 bits (376), Expect = 5e-45
 Identities = 83/226 (36%), Positives = 141/226 (62%), Gaps = 3/226 (1%)

Query: 1   MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTD 60
           MV+ASKMRK+Q+RM A+RPY+  ++++I +L   + E ++ + + ++ +KRV  ++++TD
Sbjct: 8   MVAASKMRKSQDRMAASRPYAETMRKVIGHLAHGNLEYKHPYLEDRD-VKRVGYLVVSTD 66

Query: 61  KGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDIL 120
           +GLCG +N N+F+ L+ ++     KG   D  +IG KG++F N +       +T +GD  
Sbjct: 67  RGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIGSKGVSFFNSVGGNVVAQVTGMGDNP 126

Query: 121 YFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPIKNKY 180
             ++L   +K++++ Y    +D +YI+  KFINT+ Q  TIS+LLP              
Sbjct: 127 SLSELIGPVKVMLQAYDEGRLDKLYIVSNKFINTMSQVPTISQLLPLPASD--DDDLKHK 184

Query: 181 SSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMK 226
           S  Y+YE +   L++ L  RY+E+ +YQ + EN+ASEQ +RM+AMK
Sbjct: 185 SWDYLYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMK 230


>d2jdig1 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma subunit
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 272

 Score =  146 bits (370), Expect = 2e-43
 Identities = 68/264 (25%), Positives = 122/264 (46%), Gaps = 19/264 (7%)

Query: 1   MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTD 60
           MV+A+K  + +  +  AR Y V    +                K     K+  II +++D
Sbjct: 25  MVAAAKYARAERELKPARVYGVGSLALY----------EKADIKTPEDKKKHLIIGVSSD 74

Query: 61  KGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLN-EINIKTKLCITQIGDI 119
           +GLCG+I+S++ + +  +   L + G  +    +G K  + L+   + +  +   ++G  
Sbjct: 75  RGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRR 134

Query: 120 LYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPIKNK 179
                  ++I + + +      D   II+ +F + +  K     +               
Sbjct: 135 PPTFGDASVIALELLNSGYE-FDEGSIIFNRFRSVISYKTEEKPIFSLDTI----SSAES 189

Query: 180 YSSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDEL 239
            S Y   + ++L          +  +IY S+ E+  SEQ +RM AM +AS+NA  +ID+L
Sbjct: 190 MSIYDDIDADVL---RNYQEYSLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKL 246

Query: 240 KLIYNKTRQATITKELSEIISGSS 263
            L +N+TRQA ITKEL EIISG++
Sbjct: 247 TLTFNRTRQAVITKELIEIISGAA 270


>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress
           (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 339

 Score = 31.2 bits (69), Expect = 0.11
 Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 3/86 (3%)

Query: 54  IILITTDKGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEINIKTKLCI 113
           I LIT   G+ G   S +   L+ K  E+         F   +    +++  N+   L  
Sbjct: 3   IALIT---GITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMK 59

Query: 114 TQIGDILYFNKLTNLIKILVKDYKNN 139
               D+   + L   I ++  D   N
Sbjct: 60  LHYADLTDASSLRRWIDVIKPDEVYN 85


>d1t6ua_ a.24.22.1 (A:) Nickel-containing superoxide dismutase,
           NiSOD {Streptomyces coelicolor [TaxId: 1902]}
          Length = 117

 Score = 27.5 bits (61), Expect = 0.75
 Identities = 7/54 (12%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 206 IYQSISENIASEQVSRMIAMKSASENADYIIDELKLIYNKTRQATITKELSEII 259
           +Y      I +E V  +    + +++  +     +    K ++A + K    ++
Sbjct: 8   VYDPAQARIEAESVKAVQEKMAGNDDPHFQT---RATVIKEQRAELAKHHVSVL 58


>d1wj5a_ a.4.5.59 (A:) OB fold-containing protein 1, Obfc1 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 120

 Score = 25.6 bits (56), Expect = 3.2
 Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 5/91 (5%)

Query: 157 QKATISKLLPFSDKYLTFPIKNKYSSYYIYETNILVLINKLFIRYIEALIYQSISENIAS 216
             A ++ LL  S+K   F  + K  S+Y  E   L  +  L       + + + S+ +  
Sbjct: 13  DLAGLTSLL--SEKIKEFLQEKKMQSFYQQE---LETVESLQSLASRPVTHSTGSDQVEL 67

Query: 217 EQVSRMIAMKSASENADYIIDELKLIYNKTR 247
           +        +   +NA  ++ E  L++ +  
Sbjct: 68  KDSGTSGVAQRVFKNALQLLQEKGLVFQRDS 98


>d1dlca3 f.1.3.1 (A:61-289) delta-Endotoxin (insectocide),
           N-terminal domain {Bacillus thuringiensis tenebrionis,
           CRYIIIA (BT13) [TaxId: 1444]}
          Length = 229

 Score = 25.6 bits (56), Expect = 5.5
 Identities = 11/65 (16%), Positives = 30/65 (46%)

Query: 196 KLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDELKLIYNKTRQATITKEL 255
           K F+  +EAL+ Q I++   ++ ++ +  +++  E+    +   +     +R       +
Sbjct: 47  KAFMEQVEALMDQKIADYAKNKALAELQGLQNNVEDYVSALSSWQKNPVSSRNPHSQGRI 106

Query: 256 SEIIS 260
            E+ S
Sbjct: 107 RELFS 111


>d1iica1 d.108.1.2 (A:34-218) N-myristoyl transferase, NMT {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 185

 Score = 25.6 bits (56), Expect = 6.3
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 4/42 (9%)

Query: 16  AARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILI 57
           +A P ++ ++      ++ +F C      K+ R KR+  +LI
Sbjct: 117 SAIPVTLGVRGKQVPSVEINFLC----VHKQLRSKRLTPVLI 154


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.377 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 928,411
Number of extensions: 43626
Number of successful extensions: 142
Number of sequences better than 10.0: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 29
Length of query: 265
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 181
Effective length of database: 1,254,276
Effective search space: 227023956
Effective search space used: 227023956
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.0 bits)