Query psy2901
Match_columns 265
No_of_seqs 120 out of 1060
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 20:30:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2901.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2901hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oaa_G ATP synthase gamma chai 100.0 1.3E-82 4.5E-87 562.8 8.6 262 1-265 25-286 (286)
2 2qe7_G ATP synthase subunit ga 100.0 4.3E-80 1.5E-84 547.1 -6.6 260 1-265 26-285 (286)
3 2xok_G ATP synthase subunit ga 100.0 3.9E-77 1.3E-81 531.1 4.8 250 1-265 58-310 (311)
4 3oee_G ATP synthase subunit ga 100.0 8.4E-77 2.9E-81 523.5 2.7 248 1-265 25-277 (278)
5 2ck3_G ATP synthase subunit ga 100.0 1.8E-76 6.1E-81 519.5 -4.2 246 1-265 25-272 (272)
6 1fs0_G ATP synthase gamma subu 100.0 3.6E-62 1.2E-66 420.7 9.0 223 1-226 8-230 (230)
7 1qw2_A Conserved hypothetical 73.0 2 6.7E-05 31.2 2.3 41 54-105 32-74 (102)
8 1oao_C CODH, carbon monoxide d 38.0 10 0.00035 36.5 1.2 25 54-78 517-542 (729)
9 4e29_A Chimeric WZZB chain len 36.7 1.3E+02 0.0045 25.1 7.8 107 145-253 48-169 (248)
10 3mtu_A Tropomyosin alpha-1 cha 36.4 10 0.00035 25.8 0.7 33 219-251 8-44 (75)
11 2pk8_A Uncharacterized protein 35.5 15 0.00051 26.1 1.5 36 69-104 16-51 (103)
12 3fwb_B Nuclear mRNA export pro 35.5 84 0.0029 19.9 5.1 33 191-223 12-44 (55)
13 1ews_A RK-1 defensin, alpha-de 34.2 9 0.00031 20.7 0.1 10 61-70 16-25 (32)
14 2xus_A Breast cancer metastasi 34.2 21 0.00071 22.2 1.8 42 220-262 7-48 (49)
15 2pbd_V VAsp, vasodilator-stimu 28.3 5.8 0.0002 23.9 -1.4 14 1-14 27-40 (43)
16 3u7r_A NADPH-dependent FMN red 26.2 53 0.0018 26.0 3.5 37 52-94 4-40 (190)
17 3sj5_A Methyl-accepting chemot 25.5 54 0.0018 26.0 3.4 55 36-97 110-164 (188)
18 3tem_A Ribosyldihydronicotinam 24.5 72 0.0025 25.9 4.1 41 52-97 3-43 (228)
19 3fwc_B Nuclear mRNA export pro 21.9 1.8E+02 0.0062 20.0 5.1 33 191-223 42-74 (85)
20 2oqq_A Transcription factor HY 20.7 50 0.0017 19.6 1.6 36 214-249 4-39 (42)
No 1
>3oaa_G ATP synthase gamma chain; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1}
Probab=100.00 E-value=1.3e-82 Score=562.84 Aligned_cols=262 Identities=40% Similarity=0.701 Sum_probs=239.2
Q ss_pred CcchhhhhhhhhcccccCCccchhhHHHHHhhhhhhccccccccccccceeEEEEEEecCCccccccchhHHHHHHHhhh
Q psy2901 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTDKGLCGSINSNIFRILIKKIN 80 (265)
Q Consensus 1 mVAaaKlrka~~~~~~~r~Y~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~IvitSDrGLCG~fN~~v~k~~~~~i~ 80 (265)
|||||||||||+++++.|||++++.+++++++...++..||++..++ .+++++||||||||||||||+||+|.+.+.++
T Consensus 25 mVAaaKlrkaq~~~~~~rpY~~~i~~~l~~l~~~~~~~~~~~~~~~~-~~~~~~IvitSDrGLcG~fN~ni~k~~~~~i~ 103 (286)
T 3oaa_G 25 MVAASKMRKSQDRMAASRPYAETMRKVIGHLAHGNLEYKHPYLEDRD-VKRVGYLVVSTDRGLCGGLNINLFKKLLAEMK 103 (286)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTCCSSCSCCC-CSEEEEEEECCSCCCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhCccccCcccccCC-CCcEEEEEEeCCcccccchhHHHHHHHHHHHH
Confidence 89999999999999999999999999999998765556788885433 78899999999999999999999999999988
Q ss_pred hhhccCCeeeEEEecccccccccccccccceeeeeecceeeehhhhHHHHHHHHhhhcccceeeeehhhHHHHhhhhhhh
Q psy2901 81 ELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKAT 160 (265)
Q Consensus 81 ~~~~~~~~~~l~~iG~K~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~d~v~ivy~~f~s~~~~~~~ 160 (265)
++...|+++.+++||+||.++|++++.++...+.++++.|+|+++..+++.+++.|.+|++|+|+||||+|+|+++|+|.
T Consensus 104 ~~~~~~~~~~l~~vG~Kg~~~~~~~~~~i~~~~~~~~~~p~~~~~~~i~~~~~~~~~~g~~d~v~lvyn~f~s~~~q~~~ 183 (286)
T 3oaa_G 104 TWTDKGVQCDLAMIGSKGVSFFNSVGGNVVAQVTGMGDNPSLSELIGPVKVMLQAYDEGRLDKLYIVSNKFINTMSQVPT 183 (286)
T ss_dssp HHHTTTCEEEEEEESHHHHHHHHHHCCCEEEEECCCTTCCCHHHHHHHHHHHHHHHHTTSCSEEEEEEEEEEETTEEEEE
T ss_pred HHHhCCCceEEEEeeHHHHHHHHHcCCCeEEeeccccCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEccccccccccee
Confidence 77666778899999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCCceeeeeccccceeeEEEechhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhcccccchhhhhhHH
Q psy2901 161 ISKLLPFSDKYLTFPIKNKYSSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDELK 240 (265)
Q Consensus 161 ~~~llP~~~~~~~~~~~~~~~~~~~~ep~~~~~l~~l~~~yl~~~ly~al~es~asE~~aRm~AM~~At~Na~e~i~~L~ 240 (265)
+++|||++.... .......|+|+|||+++++|+.|+|.|+++.||+||+||.||||+|||+||++|||||+|||++|+
T Consensus 184 ~~~lLPl~~~~~--~~~~~~~~~~~~Ep~~~~vl~~Llp~yl~~~iy~alles~aSE~aARm~AM~~At~NA~eli~~Lt 261 (286)
T 3oaa_G 184 ISQLLPLPASDD--DDLKHKSWDYLYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQ 261 (286)
T ss_dssp EEECSSCCCCHH--HHSCCCSCCCEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCcccc--cccccCCCCceeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999999974321 111223468999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccchhhhHHHhhhccCCcCC
Q psy2901 241 LIYNKTRQATITKELSEIISGSSVV 265 (265)
Q Consensus 241 ~~yNk~RQ~~IT~El~EIv~Ga~al 265 (265)
++|||+||++||+||+|||+||+||
T Consensus 262 l~yNr~RQa~IT~El~EIv~Ga~Al 286 (286)
T 3oaa_G 262 LVYNKARQASITQELTEIVSGAAAV 286 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhhC
Confidence 9999999999999999999999996
No 2
>2qe7_G ATP synthase subunit gamma; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP}
Probab=100.00 E-value=4.3e-80 Score=547.10 Aligned_cols=260 Identities=29% Similarity=0.521 Sum_probs=192.1
Q ss_pred CcchhhhhhhhhcccccCCccchhhHHHHHhhhhhhccccccccccccceeEEEEEEecCCccccccchhHHHHHHHhhh
Q psy2901 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTDKGLCGSINSNIFRILIKKIN 80 (265)
Q Consensus 1 mVAaaKlrka~~~~~~~r~Y~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~IvitSDrGLCG~fN~~v~k~~~~~i~ 80 (265)
|||||||||||+++...|||++++.+++.+++....+..||++..+ ..++++|||||||||||||||++|+|.+.+.++
T Consensus 26 mVAaaKlrkaq~~~~~~rpY~~~~~~~l~~l~~~~~~~~~~~~~~~-~~k~~~~IvitsDrGLcG~~N~ni~k~~~~~i~ 104 (286)
T 2qe7_G 26 MVAAAKLRRAQETAENARPYADKIKEVISSIAAGTKDFSHPMLEAR-PVKKTGYMVITSDRGLAGPYNANILRLVSKTIE 104 (286)
T ss_dssp HHHHHHTTSTTTSSSSSSSSTTCC--------------CCSSCSCC-CCSSCCCCCCCCTTCCCTHHHHHHHTGGGTTTT
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCcccccc-ccCcEEEEEEeCCCCcccchhHHHHHHHHHHHH
Confidence 8999999999999999999999999999999876434568887432 257789999999999999999999999999888
Q ss_pred hhhccCCeeeEEEecccccccccccccccceeeeeecceeeehhhhHHHHHHHHhhhcccceeeeehhhHHHHhhhhhhh
Q psy2901 81 ELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKAT 160 (265)
Q Consensus 81 ~~~~~~~~~~l~~iG~K~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~d~v~ivy~~f~s~~~~~~~ 160 (265)
++...|+++.+++||+||.++|+++|.++...+.++++.|+|+++..|++.+++.|..|++|+|+||||+|+|+++|+|.
T Consensus 105 ~~~~~~~~~~~~~iG~Kg~~~~~~~~~~i~~~~~~~~~~p~~~~a~~i~~~i~~~~~~~~~d~v~lvyn~f~s~~~q~~~ 184 (286)
T 2qe7_G 105 ERHQSKDEYVIFAVGRKGRDFFKKRGYPVVEEVTGISDTPSLTEIQDIAQSAIGMFADETFDKLTIFYNEFVSPIVQRPV 184 (286)
T ss_dssp SSCTTSSCCCCCCCSHHHHHHHHSSSSCCSCCCSCCCSSCCSTTTHHHHHHHHHHHSSSSCSCCCCCCCCCSBTTBCCCC
T ss_pred HhhccCCceEEEEechHHHHHHHHcCCCceeeeccCCCCCCHHHHHHHHHHHHHHHhcCCcceEEEEEeecccceeeeeE
Confidence 76666777889999999999999889889999999988999999999999999999999999999999999999999999
Q ss_pred hhcccccCCceeeeeccccceeeEEEechhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhcccccchhhhhhHH
Q psy2901 161 ISKLLPFSDKYLTFPIKNKYSSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDELK 240 (265)
Q Consensus 161 ~~~llP~~~~~~~~~~~~~~~~~~~~ep~~~~~l~~l~~~yl~~~ly~al~es~asE~~aRm~AM~~At~Na~e~i~~L~ 240 (265)
+.+|||++.... .. ...|+|+|||+++++|+.|+|.|+++.||+|++||.||||+|||+||++|||||+|||++|+
T Consensus 185 ~~~lLP~~~~~~---~~-~~~~~y~~Ep~~~~vl~~Ll~~yl~~~iy~al~Es~asE~aaRm~AM~~At~Na~eli~~L~ 260 (286)
T 2qe7_G 185 EKQLLPLTSEEV---LD-GPVSAYEYEPDSESVLEVLLPKYAETLIYSALLDAKASEFGARMTAMGNATDNATEMLETLT 260 (286)
T ss_dssp CCCCSSCCC---------------------------CCCTTSSHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEecCCCcccc---cc-ccCCCceecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999999963211 10 12357999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccchhhhHHHhhhccCCcCC
Q psy2901 241 LIYNKTRQATITKELSEIISGSSVV 265 (265)
Q Consensus 241 ~~yNk~RQ~~IT~El~EIv~Ga~al 265 (265)
++|||+||++||+||+||||||+||
T Consensus 261 l~yNr~RQa~IT~El~EIv~Ga~Al 285 (286)
T 2qe7_G 261 LQFNRARQAAITQEIAEIVAGANAL 285 (286)
T ss_dssp TTTSCC-------------------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHc
Confidence 9999999999999999999999996
No 3
>2xok_G ATP synthase subunit gamma, mitochondrial; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-77 Score=531.14 Aligned_cols=250 Identities=24% Similarity=0.309 Sum_probs=220.4
Q ss_pred CcchhhhhhhhhcccccCCccchhhHHHHHhhhhhhc-cccccccccccceeEEEEEEecCCccccccchhHHHHHHHhh
Q psy2901 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFE-CRNLFFKKKNRIKRVAIILITTDKGLCGSINSNIFRILIKKI 79 (265)
Q Consensus 1 mVAaaKlrka~~~~~~~r~Y~~~i~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~IvitSDrGLCG~fN~~v~k~~~~~i 79 (265)
|||||||||||++++..|||++++.+++.++.....+ ..||+ ..+++++||||||||||||||++|+|.+.+.+
T Consensus 58 mVAasKlrkaq~~~~~~rpY~~~l~~vl~~l~~~~~~~~~~p~-----~~k~~~~IvitSDrGLCG~fNsni~k~~~~~i 132 (311)
T 2xok_G 58 IVASTRLSKAEKAKISAKKMDEAEQLFYKNAETKNLDVEATET-----GAPKELIVAITSDKGLCGSIHSQLAKAVRRHL 132 (311)
T ss_dssp HHHHHHHHHHHHTTTSSTTHHHHHHHHHHHTTCCC----------------CEEEEEECCSCCSSTTHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccCCc-----ccCceEEEEEeCCCcccchhhHHHHHHHHHHH
Confidence 7999999999999999999999999999999865322 24665 14678999999999999999999999999887
Q ss_pred hhhhccCCeeeEEEeccccccccccc-ccccceeeeeecc-eeeehhhhHHHHHHHHhhhcccceeeeehhhHHHHhhhh
Q psy2901 80 NELESKGNFIDFFVIGQKGLNFLNEI-NIKTKLCITQIGD-ILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQ 157 (265)
Q Consensus 80 ~~~~~~~~~~~l~~iG~K~~~~~~~~-~~~i~~~~~~~~~-~~~~~~~~~i~~~l~~~~~~~~~d~v~ivy~~f~s~~~~ 157 (265)
++ .+|++ +++||+||.++|+++ |.++...+.++++ .|+|+++..|++.+++.|.+|++|+|+||||+|+|+++|
T Consensus 133 ~~--~~g~~--l~~VG~Kg~~~~~~~~~~~i~~~~~~~~~~~p~~~~a~~i~~~i~~~~~~g~~d~v~lvYn~f~s~~~q 208 (311)
T 2xok_G 133 ND--QPNAD--IVTIGDKIKMQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKISIFYNDPVSSLSF 208 (311)
T ss_dssp SS--CTTCE--EEEESHHHHHHHHTTSTTTEEEEEESCTTSCCCHHHHHHHHHHHHHTTCCTTCSEEEEEEEECSSSSCC
T ss_pred Hh--cCCCE--EEEechHHHHHHHHhcCCCeEEEecccCCCCCCHHHHHHHHHHHHHHHhcCCcceEEEEeeccccceee
Confidence 75 34544 999999999999984 8889899999987 899999999999999999999999999999999999999
Q ss_pred hhhhhcccccCCceeeeeccccceeeEEEechhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhcccccchhhhh
Q psy2901 158 KATISKLLPFSDKYLTFPIKNKYSSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIID 237 (265)
Q Consensus 158 ~~~~~~llP~~~~~~~~~~~~~~~~~~~~ep~~~~~l~~l~~~yl~~~ly~al~es~asE~~aRm~AM~~At~Na~e~i~ 237 (265)
+|.+++|||++.. ...+ ...+|+||| ++++|+.|+|.|+++.||+|++||.||||+|||+||++|||||+|||+
T Consensus 209 ~p~~~~lLPl~~~----~~~~-~~~~y~~EP-~e~vL~~Llp~yl~~~iy~allEs~ASE~aARm~AM~~AtdNA~eli~ 282 (311)
T 2xok_G 209 EPSEKPIFNAKTI----EQSP-SFGKFEIDT-DANVPRDLFEYTLANQMLTAMAQGYAAEISARRNAMDNASKNAGDMIN 282 (311)
T ss_dssp EEEEEEECCHHHH----HHSG-GGGGSCCCC-CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEccCCccc----cccc-CCCCceeCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998521 1111 113689999 999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhcccchhhhHHHhhhccCCcCC
Q psy2901 238 ELKLIYNKTRQATITKELSEIISGSSVV 265 (265)
Q Consensus 238 ~L~~~yNk~RQ~~IT~El~EIv~Ga~al 265 (265)
+|+++|||+||++||+||+|||+||+||
T Consensus 283 ~Ltl~yNraRQa~IT~EL~EIVsGa~Al 310 (311)
T 2xok_G 283 RYSILYNRTRQAVITNELVDIITGASSL 310 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 9999999999999999999999999996
No 4
>3oee_G ATP synthase subunit gamma; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} SCOP: c.49.2.0 PDB: 2wpd_G* 3fks_G 2hld_G* 3oeh_G* 3ofn_G* 3zry_G* 4b2q_G* 3oe7_G*
Probab=100.00 E-value=8.4e-77 Score=523.45 Aligned_cols=248 Identities=25% Similarity=0.323 Sum_probs=218.8
Q ss_pred CcchhhhhhhhhcccccCCccchhhHHHHHhhhhhhccccccccccc---cceeEEEEEEecCCccccccchhHHHHHHH
Q psy2901 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKN---RIKRVAIILITTDKGLCGSINSNIFRILIK 77 (265)
Q Consensus 1 mVAaaKlrka~~~~~~~r~Y~~~i~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~IvitSDrGLCG~fN~~v~k~~~~ 77 (265)
|||||||||||+++...|||++++.+++.++.. ||+. .++ ..++++|||||||||||||||+||+|.+.+
T Consensus 25 mVAaaKlrkaq~~~~~~rpY~~~~~~~~~~~~~------~~l~-~~~~~~~~~~~~~IvitSDrGLcG~fN~ni~k~~~~ 97 (278)
T 3oee_G 25 IVASTRLSKAEKAKISAKKMDEAEQLFYKNAET------KNLD-VEATETGAPKELIVAITSDKGLCGSIHSQLAKAVRR 97 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------CCC-----------CEEEEEECCSCCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcc------cccc-cccccccCCcEEEEEEeCCccccchhhHHHHHHHHH
Confidence 899999999999999999999999999988421 4532 221 257899999999999999999999999999
Q ss_pred hhhhhhccCCeeeEEEeccccccccccc-ccccceeeeeec-ceeeehhhhHHHHHHHHhhhcccceeeeehhhHHHHhh
Q psy2901 78 KINELESKGNFIDFFVIGQKGLNFLNEI-NIKTKLCITQIG-DILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTL 155 (265)
Q Consensus 78 ~i~~~~~~~~~~~l~~iG~K~~~~~~~~-~~~i~~~~~~~~-~~~~~~~~~~i~~~l~~~~~~~~~d~v~ivy~~f~s~~ 155 (265)
.+++. + ++.+++||+||.++|++. +.++..++.+++ +.|+|+++..|++.+++.|..|++|+|+||||+|+|++
T Consensus 98 ~~~~~---~-~~~l~~vG~Kg~~~~~~~~~~~i~~~~~~~~~~~p~~~~a~~i~~~i~~~~~~g~~d~v~ivyn~f~s~~ 173 (278)
T 3oee_G 98 HLNDQ---P-NADIVTIGDKIKMQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKISIFYNDPVSSL 173 (278)
T ss_dssp HTTSC---T-TCEEEEESHHHHHHHHHHCTTTEEEEECSCSSSCCCHHHHHHHHHHHHHTTCGGGCSEEEEEEEEECSSS
T ss_pred HHHhc---C-CeEEEEEehHHHHHHHHcCCCceEEeeccCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEecccccce
Confidence 88763 3 478999999999999865 456788888884 78999999999999999999999999999999999999
Q ss_pred hhhhhhhcccccCCceeeeeccccceeeEEEechhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhcccccchhh
Q psy2901 156 QQKATISKLLPFSDKYLTFPIKNKYSSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYI 235 (265)
Q Consensus 156 ~~~~~~~~llP~~~~~~~~~~~~~~~~~~~~ep~~~~~l~~l~~~yl~~~ly~al~es~asE~~aRm~AM~~At~Na~e~ 235 (265)
+|+|.+.+|||++... . ....+.|.|||+ +++|+.|+|.|+++.||+||+||.||||+|||+||++|||||+||
T Consensus 174 ~q~~~~~~llP~~~~~----~-~~~~~~y~~eP~-~~vl~~Llp~yl~~~iy~alles~aSE~aARm~AM~~AtdNA~el 247 (278)
T 3oee_G 174 SFEPSEKPIFNAKTIE----Q-SPSFGKFEIDTD-ANVPRDLFEYTLANQMLTAMAQGYAAEISARRNAMDNASKNAGDM 247 (278)
T ss_dssp CEEEEEEEECCHHHHH----S-CTTSTTSCCCSS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeEEEecCCCCccc----c-ccCCCceecCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 9999999999986321 1 112356899999 999999999999999999999999999999999999999999999
Q ss_pred hhhHHHhhhcccchhhhHHHhhhccCCcCC
Q psy2901 236 IDELKLIYNKTRQATITKELSEIISGSSVV 265 (265)
Q Consensus 236 i~~L~~~yNk~RQ~~IT~El~EIv~Ga~al 265 (265)
|++|+++|||+||++||+||+|||+||+||
T Consensus 248 i~~Ltl~yNr~RQa~IT~El~EIv~Ga~Al 277 (278)
T 3oee_G 248 INRYSILYNRTRQAVITNELVDIITGASSL 277 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 999999999999999999999999999996
No 5
>2ck3_G ATP synthase subunit gamma\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: c.49.2.1 PDB: 1cow_G* 1bmf_G* 1e1q_G* 1e1r_G* 1efr_G* 1e79_G* 1h8h_G* 1nbm_G* 1ohh_G* 1qo1_G 1w0j_G* 1w0k_G* 1h8e_G* 2jiz_G* 2jj1_G* 2jj2_G* 2v7q_G* 2wss_G* 2xnd_G* 2w6j_G ...
Probab=100.00 E-value=1.8e-76 Score=519.54 Aligned_cols=246 Identities=28% Similarity=0.397 Sum_probs=153.5
Q ss_pred CcchhhhhhhhhcccccCCccchhhHHHHHhhhhhhccccccccccccceeEEEEEEecCCccccccchhHHHHHHHhhh
Q psy2901 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTDKGLCGSINSNIFRILIKKIN 80 (265)
Q Consensus 1 mVAaaKlrka~~~~~~~r~Y~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~IvitSDrGLCG~fN~~v~k~~~~~i~ 80 (265)
|||||||||||+++...|||++++.+++.++- ..|| + ..+++++||||||||||||||+||+|.+.+.++
T Consensus 25 mVAaaKlrkaq~~~~~~rpY~~~~~~~~~~~~-----~~~~----~-~~k~~~~ivitSDrGLcG~~Nsni~k~~~~~~~ 94 (272)
T 2ck3_G 25 MVAAAKYARAERELKPARVYGVGSLALYEKAD-----IKTP----E-DKKKHLIIGVSSDRGLCGAIHSSVAKQMKSEAA 94 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC-----------------------------CCCCBCCSCCCSSSSHHHHC--------
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHhcc-----ccCc----c-ccCceEEEEEeCCccccccccHHHHHHHHHHHH
Confidence 89999999999999999999999999998871 2244 1 246689999999999999999999999999988
Q ss_pred hhhccCCeeeEEEecccccccccc-cccccceeeeeecc-eeeehhhhHHHHHHHHhhhcccceeeeehhhHHHHhhhhh
Q psy2901 81 ELESKGNFIDFFVIGQKGLNFLNE-INIKTKLCITQIGD-ILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQK 158 (265)
Q Consensus 81 ~~~~~~~~~~l~~iG~K~~~~~~~-~~~~i~~~~~~~~~-~~~~~~~~~i~~~l~~~~~~~~~d~v~ivy~~f~s~~~~~ 158 (265)
++...|+++.+++||+||.++|++ ++.++...+.++++ .|+|+++..+++.+++ ..+++|+|+|+||+|+|+++|+
T Consensus 95 ~~~~~g~~~~l~~vG~K~~~~~~~~~~~~i~~~~~~~~~~~p~~~~a~~i~~~~~~--~~~~~d~v~ivyn~f~s~~~q~ 172 (272)
T 2ck3_G 95 NLAAAGKEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLN--SGYEFDEGSIIFNRFRSVISYK 172 (272)
T ss_dssp ----------CCCBSHHHHHHC----------CBCSCSSSCCCHHHHHHHHHHC------------CCCCCEECSSSCEE
T ss_pred HhhccCCceEEEEecHHHHHHHHhccCCceeeeecccCCCCCCHHHHHHHHHHHHH--ccCCCceEEEEeecccccccee
Confidence 776667678899999999999995 77788888999988 4999999999999988 3579999999999999999999
Q ss_pred hhhhcccccCCceeeeeccccceeeEEEechhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhcccccchhhhhh
Q psy2901 159 ATISKLLPFSDKYLTFPIKNKYSSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDE 238 (265)
Q Consensus 159 ~~~~~llP~~~~~~~~~~~~~~~~~~~~ep~~~~~l~~l~~~yl~~~ly~al~es~asE~~aRm~AM~~At~Na~e~i~~ 238 (265)
|.+.+|||++... .. ..+|+|||+++++++.|+|.|+.+.||+||+||.||||+|||+||++|||||+|||++
T Consensus 173 p~~~~lLPl~~~~---~~----~~~~~~Ep~~~~vl~~llp~y~~~~iy~alles~aSE~aARm~AM~~AtdNA~eli~~ 245 (272)
T 2ck3_G 173 TEEKPIFSLDTIS---SA----ESMSIYDDIDADVLRNYQEYSLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDK 245 (272)
T ss_dssp CC---------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeeccCCCccc---cc----ccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999996321 11 1358999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccchhhhHHHhhhccCCcCC
Q psy2901 239 LKLIYNKTRQATITKELSEIISGSSVV 265 (265)
Q Consensus 239 L~~~yNk~RQ~~IT~El~EIv~Ga~al 265 (265)
|+++|||+||++||+||+||||||+||
T Consensus 246 L~l~yNr~RQa~IT~El~EIv~Ga~Al 272 (272)
T 2ck3_G 246 LTLTFNRTRQAVITKELIEIISGAAAL 272 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhC
Confidence 999999999999999999999999996
No 6
>1fs0_G ATP synthase gamma subunit; coiled coil, epsilon, hydrolase; 2.10A {Escherichia coli} SCOP: c.49.2.1
Probab=100.00 E-value=3.6e-62 Score=420.72 Aligned_cols=223 Identities=37% Similarity=0.666 Sum_probs=197.0
Q ss_pred CcchhhhhhhhhcccccCCccchhhHHHHHhhhhhhccccccccccccceeEEEEEEecCCccccccchhHHHHHHHhhh
Q psy2901 1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTDKGLCGSINSNIFRILIKKIN 80 (265)
Q Consensus 1 mVAaaKlrka~~~~~~~r~Y~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~IvitSDrGLCG~fN~~v~k~~~~~i~ 80 (265)
|||||||||||+++++.|||++++.+++.+++....+..||++..+ ..+++++||||||||||||||+||+|.+.+.++
T Consensus 8 mVAasKlrkaq~~~~~~rpY~~~~~~~l~~l~~~~~~~~~p~~~~r-~~k~~~~IvitSDrGLcG~~Nsni~k~~~~~i~ 86 (230)
T 1fs0_G 8 MVAASKMRKSQDRMAASRPYAETMRKVIGHLAHGNLEYKHPYLEDR-DVKRVGYLVVSTDRGLCGGLNINLFKKLLAEMK 86 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCGGGSCC-CCSEEEEEEECCSSSCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhcCcccCCcccccc-ccCcEEEEEEeCCccccccccHHHHHHHHHHHH
Confidence 8999999999999999999999999999999876434568887532 267889999999999999999999999999998
Q ss_pred hhhccCCeeeEEEecccccccccccccccceeeeeecceeeehhhhHHHHHHHHhhhcccceeeeehhhHHHHhhhhhhh
Q psy2901 81 ELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKAT 160 (265)
Q Consensus 81 ~~~~~~~~~~l~~iG~K~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~d~v~ivy~~f~s~~~~~~~ 160 (265)
++..+|+++.+++||+||.++|+++|.++...+.++++.|+|+++..|++.+++.|.+|++|+|+||||+|+|+++|+|.
T Consensus 87 ~~~~~g~~~~l~~vG~Kg~~~~~~~~~~i~~~~~~~~~~p~~~~a~~i~~~i~~~~~~g~~d~v~lvYn~f~s~~~q~p~ 166 (230)
T 1fs0_G 87 TWTDKGVQCDLAMIGSKGVSFFNSVGGNVVAQVTGMGDNPSLSELIGPVKVMLQAYDEGRLDKLYIVSNKFINTMSQVPT 166 (230)
T ss_dssp HHHHTTCEEEEEEESHHHHHHHHHHCCCEEEEECCCTTCCCSHHHHHHHHHHHHHHHTTSCSCEEEEEEEEEETTEEEEE
T ss_pred HhhcCCCcEEEEEEeHHHHHHHHhCCCceEEeecCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEeeecccEEeeEE
Confidence 87777778899999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCCceeeeeccccceeeEEEechhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhh
Q psy2901 161 ISKLLPFSDKYLTFPIKNKYSSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMK 226 (265)
Q Consensus 161 ~~~llP~~~~~~~~~~~~~~~~~~~~ep~~~~~l~~l~~~yl~~~ly~al~es~asE~~aRm~AM~ 226 (265)
+++|||++.... .......|+|+|||+++++|+.|+|.|+++.||+|++||.||||+|||+||+
T Consensus 167 ~~~lLP~~~~~~--~~~~~~~~~y~~Ep~~~~vl~~Llp~yl~~~iy~alles~aSE~aARm~AM~ 230 (230)
T 1fs0_G 167 ISQLLPLPASDD--DDLKHKSWDYLYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMK 230 (230)
T ss_dssp EEEEESCC---------CCCSCCCEEESCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEecCCChhhc--ccccccCCCeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999963211 1100123579999999999999999999999999999999999999999997
No 7
>1qw2_A Conserved hypothetical protein TA1206; structural genomics, beta/alpha, antiparallel beta sandwich, protein structure initiative; 1.50A {Thermoplasma acidophilum} SCOP: d.249.1.1
Probab=72.96 E-value=2 Score=31.20 Aligned_cols=41 Identities=27% Similarity=0.370 Sum_probs=28.7
Q ss_pred EEEEecCCcc--ccccchhHHHHHHHhhhhhhccCCeeeEEEeccccccccccc
Q psy2901 54 IILITTDKGL--CGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEI 105 (265)
Q Consensus 54 ~IvitSDrGL--CG~fN~~v~k~~~~~i~~~~~~~~~~~l~~iG~K~~~~~~~~ 105 (265)
+++|.+|+|+ ||.+|-.+..++. ++-..++|-+..+-+-..
T Consensus 32 Ll~i~~~kG~imCGalDv~~~ekl~-----------~~Aarv~GV~t~edlL~a 74 (102)
T 1qw2_A 32 LLFIKGSKGYAMCGYLNMETSNKVG-----------DIAVRVMGVKTLDDMLSA 74 (102)
T ss_dssp EEEEECSSCEEECTTCCHHHHHHTT-----------CCEEECCSCCSHHHHHHS
T ss_pred EEEEEeCceEEEecccChhHHHhhc-----------cceEEEEccCCHHHHhhC
Confidence 7899999998 9999988744321 234456677777665433
No 8
>1oao_C CODH, carbon monoxide dehydrogenase/acetyl-COA synthase alpha; oxidoreductase-transferase complex, electron transfer, oxidoreductase; 1.90A {Moorella thermoacetica} SCOP: e.26.1.3 PDB: 2z8y_M 3i01_M 3i04_M 1mjg_M 1ru3_A 3git_A 3s2x_A
Probab=37.98 E-value=10 Score=36.47 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=19.6
Q ss_pred EEEEecCC-ccccccchhHHHHHHHh
Q psy2901 54 IILITTDK-GLCGSINSNIFRILIKK 78 (265)
Q Consensus 54 ~IvitSDr-GLCG~fN~~v~k~~~~~ 78 (265)
+=|||.|| ||||++|=-=.|+..+.
T Consensus 517 VCvvtPeR~~lCGaisWlDaKAa~ei 542 (729)
T 1oao_C 517 VCIVTPERVGLCGAVSWLDAKASYEI 542 (729)
T ss_dssp CEEEBTTBCCTTSCCCHHHHHHHHHH
T ss_pred eEEECCCCcccccccchhhhhhhhcc
Confidence 45789998 99999998777776543
No 9
>4e29_A Chimeric WZZB chain length determinant protein; regulation of LPS O-antigen chain length, inner membran membrane protein; 1.60A {Shigella flexneri} PDB: 4e2c_A 4e2h_A 3b8p_A
Probab=36.71 E-value=1.3e+02 Score=25.10 Aligned_cols=107 Identities=13% Similarity=0.118 Sum_probs=54.7
Q ss_pred eehhhHHHHhhhhhhhhh--cccccCCceeeeecccc--ceeeEEEechhhHHHHHHHHHHHH---HHHHHHHhhhhhHH
Q psy2901 145 YIIYTKFINTLQQKATIS--KLLPFSDKYLTFPIKNK--YSSYYIYETNILVLINKLFIRYIE---ALIYQSISENIASE 217 (265)
Q Consensus 145 ~ivy~~f~s~~~~~~~~~--~llP~~~~~~~~~~~~~--~~~~~~~ep~~~~~l~~l~~~yl~---~~ly~al~es~asE 217 (265)
.-||++|.+.++-..... +-.|-+-... +..+. ..+...|.-+..+--..++..|+. .....-+.+...+.
T Consensus 48 ~~~~~~f~~~~~a~~~~~~~~~~~~kl~I~--~~~k~~~~~~~LSfsA~ta~~Aq~lL~~YI~fv~~~v~~el~~~l~~~ 125 (248)
T 4e29_A 48 ETLIGRFSSAFSALAETLDNQEEPEKLTIE--PSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELERDLKDN 125 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSSCCEEEEE--ECC-----CEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccCceeEEe--cCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788877665443322 3344321000 11111 122334553334455666666665 45666677777888
Q ss_pred HHHHHHhhhccc--------ccchhhhhhHHHhhhcccchhhhH
Q psy2901 218 QVSRMIAMKSAS--------ENADYIIDELKLIYNKTRQATITK 253 (265)
Q Consensus 218 ~~aRm~AM~~At--------~Na~e~i~~L~~~yNk~RQ~~IT~ 253 (265)
-..|+..|+.-. ...+.-|+.|+--.+=++++.|++
T Consensus 126 i~~r~~~l~~ql~~~~~~ak~qr~~rI~rL~~AL~IA~aaGI~k 169 (248)
T 4e29_A 126 IALGRKNLQDSLRTQEVVAQEQKDLRIRQIEEALRYADEAKITQ 169 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 888887777633 333344445555455555555543
No 10
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=36.38 E-value=10 Score=25.77 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=26.7
Q ss_pred HHHHHhhhcccccchhhhhhHHH----hhhcccchhh
Q psy2901 219 VSRMIAMKSASENADYIIDELKL----IYNKTRQATI 251 (265)
Q Consensus 219 ~aRm~AM~~At~Na~e~i~~L~~----~yNk~RQ~~I 251 (265)
.-.|.+|+.=.+|+.+.++.|.. -|+|+|+-+|
T Consensus 8 KkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~ 44 (75)
T 3mtu_A 8 KKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIEL 44 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34688888888999999999887 6779988654
No 11
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=35.50 E-value=15 Score=26.08 Aligned_cols=36 Identities=31% Similarity=0.494 Sum_probs=30.5
Q ss_pred hhHHHHHHHhhhhhhccCCeeeEEEecccccccccc
Q psy2901 69 SNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNE 104 (265)
Q Consensus 69 ~~v~k~~~~~i~~~~~~~~~~~l~~iG~K~~~~~~~ 104 (265)
..|+..++..+++++..|-++.++.+|.-.+.|++.
T Consensus 16 irIl~~ieekinELk~dG~ePDIiL~G~eayef~~e 51 (103)
T 2pk8_A 16 IRILGEIEEKMNELKMDGFNPDIILFGREAYNFLSN 51 (103)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEcHHHHHHHHH
Confidence 456777888888888899999999999999999864
No 12
>3fwb_B Nuclear mRNA export protein SAC3; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae}
Probab=35.46 E-value=84 Score=19.86 Aligned_cols=33 Identities=9% Similarity=0.194 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q psy2901 191 LVLINKLFIRYIEALIYQSISENIASEQVSRMI 223 (265)
Q Consensus 191 ~~~l~~l~~~yl~~~ly~al~es~asE~~aRm~ 223 (265)
+.+-++|+.-||.-.||...+||+|-+..-|..
T Consensus 12 ~sLs~eLy~AFihE~lY~~~leskAd~f~~~~l 44 (55)
T 3fwb_B 12 DTMTRELYDAFLHERLYLIYMDSRAELKRNSTL 44 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677899999999999999999988877654
No 13
>1ews_A RK-1 defensin, alpha-defisin; alpha defensin, triple-stranded beta-sheet, antimicrobial protein; NMR {Oryctolagus cuniculus} SCOP: g.9.1.1
Probab=34.25 E-value=9 Score=20.71 Aligned_cols=10 Identities=50% Similarity=0.959 Sum_probs=8.0
Q ss_pred Cccccccchh
Q psy2901 61 KGLCGSINSN 70 (265)
Q Consensus 61 rGLCG~fN~~ 70 (265)
.|-||-||+.
T Consensus 16 dgscglfnsk 25 (32)
T 1ews_A 16 DGSCGLFNSK 25 (32)
T ss_dssp EECCSSSSCS
T ss_pred ccccccccce
Confidence 3779999985
No 14
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=34.16 E-value=21 Score=22.17 Aligned_cols=42 Identities=17% Similarity=0.147 Sum_probs=30.5
Q ss_pred HHHHhhhcccccchhhhhhHHHhhhcccchhhhHHHhhhccCC
Q psy2901 220 SRMIAMKSASENADYIIDELKLIYNKTRQATITKELSEIISGS 262 (265)
Q Consensus 220 aRm~AM~~At~Na~e~i~~L~~~yNk~RQ~~IT~El~EIv~Ga 262 (265)
-|+.||+.=+ ++++.-..|+-++-+-|-+.|-.||.|+-+|-
T Consensus 7 rr~e~ld~l~-~LEkqF~~LkEqlY~ERl~ql~~~Leel~~g~ 48 (49)
T 2xus_A 7 RRSECVSEML-DLEKQFSELKEKLFRERLSQLRLRLEEVGAER 48 (49)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 4566666533 45667778888889999999999999998884
No 15
>2pbd_V VAsp, vasodilator-stimulated phosphoprotein; ternary complex, profilin, actin, poly-proline, loading poly-Pro site, GAB domain, structural protein; HET: HIC ATP; 1.50A {Homo sapiens}
Probab=28.35 E-value=5.8 Score=23.87 Aligned_cols=14 Identities=21% Similarity=0.465 Sum_probs=9.1
Q ss_pred Ccchhhhhhhhhcc
Q psy2901 1 MVSASKMRKTQNRM 14 (265)
Q Consensus 1 mVAaaKlrka~~~~ 14 (265)
++|.|||||.++.-
T Consensus 27 alAgAKLRkV~r~e 40 (43)
T 2pbd_V 27 AIAGAKLRKVSKQE 40 (43)
T ss_dssp HHHTCCCBCCC---
T ss_pred HHhhhhhccccCcc
Confidence 36889999988754
No 16
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=26.17 E-value=53 Score=26.04 Aligned_cols=37 Identities=14% Similarity=0.239 Sum_probs=26.2
Q ss_pred EEEEEEecCCccccccchhHHHHHHHhhhhhhccCCeeeEEEe
Q psy2901 52 VAIILITTDKGLCGSINSNIFRILIKKINELESKGNFIDFFVI 94 (265)
Q Consensus 52 ~~~IvitSDrGLCG~fN~~v~k~~~~~i~~~~~~~~~~~l~~i 94 (265)
...|++||-| -|++|..+.+.+.+...+ +.++.++-+
T Consensus 4 ~I~vi~GS~R--~~S~~~~la~~~~~~~~~----~~~~~~idl 40 (190)
T 3u7r_A 4 TVAVMVGSLR--KDSLNHKLMKVLQKLAEG----RLEFHLLHI 40 (190)
T ss_dssp EEEEEESCCS--TTCHHHHHHHHHHHHHTT----TEEEEECCG
T ss_pred EEEEEECCCC--CCCHHHHHHHHHHHhccC----CCEEEEEec
Confidence 4567889999 689999999998776542 434555433
No 17
>3sj5_A Methyl-accepting chemotaxis protein; no or O2-sensing protein, signaling protein; HET: HEM; 1.67A {Caldanaerobacter subterraneus} SCOP: d.278.1.1 PDB: 3nvr_A* 3tf0_A* 1u4h_A* 1u56_A* 3m0b_A* 1u55_A* 3tf1_A* 1xbn_A* 3nvu_A* 3eee_A* 3iqb_A* 3lah_A* 3lai_A*
Probab=25.51 E-value=54 Score=26.04 Aligned_cols=55 Identities=9% Similarity=-0.077 Sum_probs=33.4
Q ss_pred hccccccccccccceeEEEEEEecCCccccccchhHHHHHHHhhhhhhccCCeeeEEEeccc
Q psy2901 36 FECRNLFFKKKNRIKRVAIILITTDKGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQK 97 (265)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~IvitSDrGLCG~fN~~v~k~~~~~i~~~~~~~~~~~l~~iG~K 97 (265)
++...|.+.-.+..+..+.+.-.|.|||| .|=..+++.+.++..+ ++.+-.++.+
T Consensus 110 p~~~~Psf~~~~~~~~~l~l~Y~S~Rgl~-~~~~Gli~~aa~~f~~------~v~i~~~~~~ 164 (188)
T 3sj5_A 110 KGATPPRLIAKPVAKDAIEMEYVSKRKMY-DYFLGLIEGSSKFFKE------EISVEEVERG 164 (188)
T ss_dssp TTCCCCEEEEEEEETTEEEEEEEETTCCH-HHHHHHHHHHHHHHTC------CEEEEEEEEE
T ss_pred CCCCCCeEEEEECCCCEEEEEEECCCCHH-HHHHHHHHHHHHHhCC------CeEEEEeccc
Confidence 33344544322224567899999999995 6777788877666543 3445444443
No 18
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=24.55 E-value=72 Score=25.93 Aligned_cols=41 Identities=10% Similarity=0.195 Sum_probs=31.7
Q ss_pred EEEEEEecCCccccccchhHHHHHHHhhhhhhccCCeeeEEEeccc
Q psy2901 52 VAIILITTDKGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQK 97 (265)
Q Consensus 52 ~~~IvitSDrGLCG~fN~~v~k~~~~~i~~~~~~~~~~~l~~iG~K 97 (265)
..+||.+|-|. +++|..+.+.+.+.+++ .|.++.++-+.+.
T Consensus 3 kiLiI~gspr~--~S~t~~l~~~~~~~l~~---~g~ev~~~dL~~~ 43 (228)
T 3tem_A 3 KVLIVYAHQEP--KSFNGSLKNVAVDELSR---QGCTVTVSDLYAM 43 (228)
T ss_dssp EEEEEECCSCT--TSHHHHHHHHHHHHHHH---HTCEEEEEETTTT
T ss_pred EEEEEEeCCCC--CCHHHHHHHHHHHHHHH---CCCEEEEEEhhhc
Confidence 36788899886 89999999999887765 3557777766654
No 19
>3fwc_B Nuclear mRNA export protein SAC3; gene gating, complex, calcium, cell cycle, cell division, mitosis, mRNA transport, nuclear pore complex, nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=21.91 E-value=1.8e+02 Score=19.98 Aligned_cols=33 Identities=9% Similarity=0.194 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q psy2901 191 LVLINKLFIRYIEALIYQSISENIASEQVSRMI 223 (265)
Q Consensus 191 ~~~l~~l~~~yl~~~ly~al~es~asE~~aRm~ 223 (265)
+.+-++|+.-|+.-.+|...+||+|-+..-|..
T Consensus 42 ~sLs~eLy~AFihE~lY~~~leskAd~f~~~~l 74 (85)
T 3fwc_B 42 DTMTRELYDAFLHERLYLIYMDSRAELKRNSTL 74 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677899999999999999999988877654
No 20
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=20.73 E-value=50 Score=19.64 Aligned_cols=36 Identities=14% Similarity=0.121 Sum_probs=26.7
Q ss_pred hhHHHHHHHHhhhcccccchhhhhhHHHhhhcccch
Q psy2901 214 IASEQVSRMIAMKSASENADYIIDELKLIYNKTRQA 249 (265)
Q Consensus 214 ~asE~~aRm~AM~~At~Na~e~i~~L~~~yNk~RQ~ 249 (265)
+.+|.-+|-.-|+.-..-.++.+..|+.+-.-+||-
T Consensus 4 Yl~eLE~r~k~le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 4 YLSELENRVKDLENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 456666676667666666778888888888888883
Done!