Query psy2902
Match_columns 945
No_of_seqs 614 out of 4386
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 20:32:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2902.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2902hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100|consensus 100.0 2E-111 4E-116 862.1 50.3 566 69-644 34-608 (663)
2 PTZ00186 heat shock 70 kDa pre 100.0 5.2E-90 1.1E-94 810.8 65.9 563 71-643 27-590 (657)
3 KOG0102|consensus 100.0 5.1E-91 1.1E-95 740.4 44.2 563 72-642 28-590 (640)
4 PRK13410 molecular chaperone D 100.0 7.5E-89 1.6E-93 805.3 66.1 566 70-643 1-570 (668)
5 PTZ00400 DnaK-type molecular c 100.0 1.3E-88 2.7E-93 806.9 66.6 567 70-644 40-606 (663)
6 PRK13411 molecular chaperone D 100.0 3.4E-88 7.4E-93 803.2 66.8 566 70-644 1-567 (653)
7 PLN03184 chloroplast Hsp70; Pr 100.0 5.4E-87 1.2E-91 792.9 67.0 565 70-644 38-604 (673)
8 PRK00290 dnaK molecular chaper 100.0 1.1E-86 2.4E-91 792.6 67.9 565 70-644 1-565 (627)
9 PTZ00009 heat shock 70 kDa pro 100.0 5.1E-85 1.1E-89 777.3 68.3 563 72-643 5-578 (653)
10 TIGR02350 prok_dnaK chaperone 100.0 3.5E-85 7.6E-90 778.2 66.6 562 73-644 2-563 (595)
11 CHL00094 dnaK heat shock prote 100.0 4.6E-85 9.9E-90 775.7 66.3 565 70-644 1-567 (621)
12 TIGR01991 HscA Fe-S protein as 100.0 3.8E-84 8.2E-89 762.5 66.0 551 73-644 1-553 (599)
13 PRK05183 hscA chaperone protei 100.0 2.9E-84 6.3E-89 764.6 62.6 562 55-644 6-569 (616)
14 KOG0101|consensus 100.0 2.3E-83 5E-88 715.0 43.6 562 72-644 8-579 (620)
15 PRK01433 hscA chaperone protei 100.0 3.4E-81 7.3E-86 730.8 61.2 539 53-643 4-546 (595)
16 COG0443 DnaK Molecular chapero 100.0 2.8E-79 6.2E-84 709.9 50.8 541 71-643 5-546 (579)
17 PF00012 HSP70: Hsp70 protein; 100.0 3.7E-77 8E-82 718.7 58.0 559 73-642 1-568 (602)
18 KOG0103|consensus 100.0 3.6E-68 7.8E-73 583.9 43.7 560 70-644 1-612 (727)
19 COG0484 DnaJ DnaJ-class molecu 100.0 8.7E-69 1.9E-73 566.4 31.1 353 575-945 14-369 (371)
20 KOG0104|consensus 100.0 1.3E-62 2.7E-67 539.9 43.7 558 72-642 23-699 (902)
21 PRK14288 chaperone protein Dna 100.0 6.2E-58 1.3E-62 505.2 33.3 352 575-945 13-368 (369)
22 PRK14298 chaperone protein Dna 100.0 3.4E-57 7.3E-62 500.1 33.0 353 576-945 16-375 (377)
23 PRK14277 chaperone protein Dna 100.0 6.2E-57 1.3E-61 501.1 33.3 356 575-945 15-385 (386)
24 PRK14287 chaperone protein Dna 100.0 1.3E-56 2.9E-61 495.0 32.8 351 575-945 14-368 (371)
25 PRK14296 chaperone protein Dna 100.0 1.5E-56 3.2E-61 494.1 32.5 337 575-934 14-368 (372)
26 PRK14286 chaperone protein Dna 100.0 1.5E-56 3.2E-61 494.8 32.6 338 575-923 14-358 (372)
27 PRK14276 chaperone protein Dna 100.0 1.9E-56 4E-61 496.2 33.1 352 576-945 15-377 (380)
28 PRK14284 chaperone protein Dna 100.0 3.4E-56 7.4E-61 496.0 33.3 356 576-945 12-386 (391)
29 PRK14297 chaperone protein Dna 100.0 2.7E-56 5.8E-61 495.7 32.1 354 576-945 15-379 (380)
30 PRK10767 chaperone protein Dna 100.0 5.8E-56 1.3E-60 492.8 34.1 357 575-945 14-370 (371)
31 PRK14280 chaperone protein Dna 100.0 5.7E-56 1.2E-60 491.6 33.4 351 576-945 15-373 (376)
32 PRK14301 chaperone protein Dna 100.0 3.7E-56 8E-61 491.9 30.8 346 576-945 15-363 (373)
33 PRK14278 chaperone protein Dna 100.0 8.5E-56 1.8E-60 489.9 33.7 356 575-945 13-375 (378)
34 PRK14300 chaperone protein Dna 100.0 2.1E-55 4.5E-60 486.5 33.0 354 576-945 14-371 (372)
35 PRK14279 chaperone protein Dna 100.0 2.8E-55 6.1E-60 487.3 32.1 335 576-922 20-378 (392)
36 PRK14294 chaperone protein Dna 100.0 3.5E-55 7.6E-60 484.3 32.7 347 576-945 15-363 (366)
37 PRK14285 chaperone protein Dna 100.0 2.5E-55 5.4E-60 483.9 30.9 334 575-923 13-354 (365)
38 PRK14295 chaperone protein Dna 100.0 8.1E-55 1.8E-59 483.2 34.3 349 575-943 19-388 (389)
39 PRK14281 chaperone protein Dna 100.0 6.3E-55 1.4E-59 486.1 32.7 358 576-945 14-396 (397)
40 PRK14289 chaperone protein Dna 100.0 1.5E-53 3.2E-58 475.4 33.4 355 575-945 15-385 (386)
41 PRK14282 chaperone protein Dna 100.0 4.7E-53 1E-57 467.9 33.1 339 575-923 14-364 (369)
42 PTZ00037 DnaJ_C chaperone prot 100.0 4.3E-53 9.2E-58 469.3 29.4 316 576-922 39-366 (421)
43 PRK14293 chaperone protein Dna 100.0 3.5E-52 7.6E-57 461.8 32.1 350 576-941 14-371 (374)
44 PRK14291 chaperone protein Dna 100.0 4.7E-52 1E-56 461.4 32.2 336 575-923 13-371 (382)
45 TIGR02349 DnaJ_bact chaperone 100.0 5E-52 1.1E-56 459.6 31.7 333 576-922 11-353 (354)
46 PRK14292 chaperone protein Dna 100.0 1E-51 2.2E-56 458.9 31.9 351 576-945 13-368 (371)
47 PRK14283 chaperone protein Dna 100.0 1.9E-51 4.1E-56 456.6 33.7 352 575-945 15-376 (378)
48 PRK14290 chaperone protein Dna 100.0 4.2E-51 9E-56 451.7 32.5 336 575-923 13-357 (365)
49 PRK11678 putative chaperone; P 100.0 3.5E-49 7.5E-54 445.7 37.3 341 73-451 2-447 (450)
50 KOG0712|consensus 100.0 1.3E-45 2.9E-50 384.5 21.6 313 576-920 15-337 (337)
51 PRK14299 chaperone protein Dna 100.0 3.4E-37 7.4E-42 330.1 24.0 259 576-922 15-286 (291)
52 PRK10266 curved DNA-binding pr 100.0 7.2E-37 1.6E-41 330.5 25.7 283 575-934 14-301 (306)
53 PRK13928 rod shape-determining 100.0 2.5E-35 5.3E-40 326.9 33.3 310 74-452 6-324 (336)
54 PRK13929 rod-share determining 100.0 6E-35 1.3E-39 322.4 34.6 308 73-449 6-324 (335)
55 PRK13927 rod shape-determining 100.0 6.7E-33 1.5E-37 308.1 34.3 311 71-451 5-324 (334)
56 TIGR00904 mreB cell shape dete 100.0 1.2E-32 2.7E-37 305.1 33.1 310 73-451 4-327 (333)
57 PRK13930 rod shape-determining 100.0 7E-32 1.5E-36 300.5 32.7 310 73-451 10-328 (335)
58 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 8.8E-31 1.9E-35 280.9 22.5 309 73-450 3-320 (326)
59 COG1077 MreB Actin-like ATPase 100.0 1.6E-27 3.5E-32 243.5 27.5 314 72-452 7-332 (342)
60 TIGR02529 EutJ ethanolamine ut 100.0 5E-27 1.1E-31 245.2 23.8 206 176-447 33-238 (239)
61 PRK15080 ethanolamine utilizat 99.9 3.6E-24 7.7E-29 227.9 28.9 203 181-449 65-267 (267)
62 TIGR03835 termin_org_DnaJ term 99.9 1.6E-25 3.5E-30 251.2 17.2 160 689-906 656-816 (871)
63 COG0484 DnaJ DnaJ-class molecu 99.9 3.9E-25 8.4E-30 235.0 8.3 224 596-842 40-347 (371)
64 PRK14285 chaperone protein Dna 99.9 1E-21 2.2E-26 217.1 10.2 171 660-842 98-350 (365)
65 KOG0713|consensus 99.8 7.7E-22 1.7E-26 203.3 7.2 298 576-910 27-328 (336)
66 PRK14298 chaperone protein Dna 99.8 1.3E-21 2.8E-26 217.0 9.2 152 683-842 112-348 (377)
67 TIGR01174 ftsA cell division p 99.8 3.5E-19 7.5E-24 200.6 27.2 195 217-448 157-371 (371)
68 PRK14288 chaperone protein Dna 99.8 3.4E-21 7.4E-26 213.3 9.8 173 661-841 89-341 (369)
69 PRK14282 chaperone protein Dna 99.8 5.7E-21 1.2E-25 212.1 10.3 171 664-842 103-360 (369)
70 PRK14276 chaperone protein Dna 99.8 4.5E-21 9.8E-26 213.5 8.5 151 683-841 117-352 (380)
71 PRK14296 chaperone protein Dna 99.8 8E-21 1.7E-25 210.3 10.3 151 683-841 120-357 (372)
72 PRK14301 chaperone protein Dna 99.8 6.7E-21 1.5E-25 211.3 9.4 152 683-842 115-347 (373)
73 PRK10767 chaperone protein Dna 99.8 1.4E-20 3.1E-25 209.6 10.4 174 660-842 91-345 (371)
74 PRK09472 ftsA cell division pr 99.8 1.2E-18 2.6E-23 198.3 25.5 195 220-450 168-387 (420)
75 PRK14279 chaperone protein Dna 99.8 1.5E-20 3.3E-25 209.6 8.5 172 661-841 122-374 (392)
76 KOG0715|consensus 99.8 2.6E-20 5.6E-25 197.1 8.7 234 576-848 54-288 (288)
77 PRK14277 chaperone protein Dna 99.8 4.3E-20 9.3E-25 206.1 9.3 175 659-842 103-362 (386)
78 PRK14280 chaperone protein Dna 99.8 7.4E-20 1.6E-24 203.5 9.0 152 683-842 114-350 (376)
79 PRK14300 chaperone protein Dna 99.8 9.7E-20 2.1E-24 202.2 9.5 175 660-842 93-349 (372)
80 PRK14286 chaperone protein Dna 99.8 1E-19 2.2E-24 201.9 9.5 174 660-841 98-353 (372)
81 PRK14284 chaperone protein Dna 99.8 1.8E-19 3.8E-24 201.5 9.1 152 683-842 129-363 (391)
82 PRK14287 chaperone protein Dna 99.8 3E-19 6.6E-24 198.0 8.5 152 683-842 109-345 (371)
83 PRK14290 chaperone protein Dna 99.8 4.8E-19 1E-23 196.5 9.9 152 683-842 120-353 (365)
84 PRK14295 chaperone protein Dna 99.8 7E-19 1.5E-23 196.1 10.8 170 660-841 117-368 (389)
85 PRK14294 chaperone protein Dna 99.8 5.7E-19 1.2E-23 196.0 9.5 153 683-843 115-348 (366)
86 PRK14278 chaperone protein Dna 99.8 8.7E-19 1.9E-23 194.8 10.4 152 683-842 110-347 (378)
87 PF01556 CTDII: DnaJ C termina 99.8 1.6E-18 3.5E-23 148.2 8.2 79 837-915 1-81 (81)
88 PRK14281 chaperone protein Dna 99.8 8.7E-19 1.9E-23 196.1 8.1 151 683-841 134-368 (397)
89 PRK14283 chaperone protein Dna 99.7 2.9E-18 6.2E-23 191.2 11.2 169 661-841 98-352 (378)
90 PRK14297 chaperone protein Dna 99.7 3E-18 6.6E-23 191.2 10.7 172 660-841 98-354 (380)
91 TIGR02349 DnaJ_bact chaperone 99.7 5.7E-18 1.2E-22 188.0 8.3 171 660-840 93-348 (354)
92 PRK14289 chaperone protein Dna 99.7 9.1E-18 2E-22 188.0 9.3 171 662-840 98-359 (386)
93 COG0849 ftsA Cell division ATP 99.7 1.9E-15 4.1E-20 166.6 25.8 199 218-452 165-381 (418)
94 PRK14291 chaperone protein Dna 99.7 1.2E-17 2.6E-22 186.2 8.6 141 683-832 127-351 (382)
95 PRK14293 chaperone protein Dna 99.7 3.8E-17 8.3E-22 181.9 8.0 152 683-842 114-351 (374)
96 cd00012 ACTIN Actin; An ubiqui 99.7 1.9E-15 4.1E-20 170.8 19.8 308 74-451 2-347 (371)
97 PRK14292 chaperone protein Dna 99.7 2.9E-16 6.3E-21 175.2 10.5 151 683-841 110-344 (371)
98 PTZ00037 DnaJ_C chaperone prot 99.6 1.7E-16 3.7E-21 177.2 8.5 150 684-839 122-360 (421)
99 KOG0712|consensus 99.6 9.2E-16 2E-20 161.3 9.6 138 685-829 100-324 (337)
100 smart00268 ACTIN Actin. ACTIN 99.6 1.7E-14 3.7E-19 163.3 19.0 303 73-451 3-347 (373)
101 COG4820 EutJ Ethanolamine util 99.6 9E-15 1.9E-19 138.5 10.5 196 188-449 77-272 (277)
102 PRK13917 plasmid segregation p 99.4 7.1E-12 1.5E-16 138.6 21.8 210 203-454 109-339 (344)
103 PTZ00280 Actin-related protein 99.4 1.3E-11 2.8E-16 141.0 24.4 292 73-428 6-337 (414)
104 PTZ00452 actin; Provisional 99.4 5.1E-11 1.1E-15 133.7 21.7 304 72-451 6-349 (375)
105 PRK15027 xylulokinase; Provisi 99.3 1.1E-11 2.3E-16 144.9 16.1 300 130-458 121-441 (484)
106 PF00022 Actin: Actin; InterP 99.3 4.7E-11 1E-15 136.4 20.3 309 73-452 6-368 (393)
107 TIGR02628 fuculo_kin_coli L-fu 99.3 7.2E-12 1.6E-16 145.5 13.0 220 219-457 214-446 (465)
108 PTZ00281 actin; Provisional 99.3 9.8E-11 2.1E-15 131.8 20.0 303 73-451 8-350 (376)
109 PRK10331 L-fuculokinase; Provi 99.3 2.3E-11 5E-16 141.6 14.8 216 221-457 217-442 (470)
110 PTZ00004 actin-2; Provisional 99.3 3.1E-10 6.7E-15 128.0 21.2 301 73-451 8-352 (378)
111 PTZ00466 actin-like protein; P 99.2 3.9E-10 8.4E-15 126.7 20.1 302 73-451 14-354 (380)
112 TIGR01175 pilM type IV pilus a 99.2 2.6E-09 5.7E-14 119.8 24.0 180 216-449 141-347 (348)
113 TIGR01314 gntK_FGGY gluconate 99.2 1.5E-10 3.2E-15 136.2 13.9 223 222-457 215-454 (505)
114 PRK00047 glpK glycerol kinase; 99.1 7.6E-10 1.7E-14 129.9 17.6 205 230-457 236-456 (498)
115 PTZ00294 glycerol kinase-like 99.1 1.5E-09 3.2E-14 127.6 19.1 207 229-458 236-460 (504)
116 PLN02295 glycerol kinase 99.1 7.8E-10 1.7E-14 130.1 16.6 204 230-455 239-463 (512)
117 TIGR03739 PRTRC_D PRTRC system 99.1 3.3E-09 7.1E-14 116.8 19.9 206 203-449 101-318 (320)
118 COG1070 XylB Sugar (pentulose 99.1 5.9E-10 1.3E-14 130.4 14.7 217 216-454 216-451 (502)
119 TIGR01315 5C_CHO_kinase FGGY-f 99.1 2.7E-10 5.8E-15 134.7 11.8 316 128-455 129-494 (541)
120 PF11104 PilM_2: Type IV pilus 99.1 1.4E-09 3.1E-14 121.0 16.3 209 188-449 90-339 (340)
121 PF00684 DnaJ_CXXCXGXG: DnaJ c 99.1 1.5E-10 3.2E-15 94.3 5.8 61 719-779 1-66 (66)
122 TIGR01234 L-ribulokinase L-rib 99.1 5.6E-10 1.2E-14 132.1 12.6 222 221-456 247-488 (536)
123 PRK04123 ribulokinase; Provisi 99.1 6.1E-10 1.3E-14 132.4 12.9 220 222-456 252-491 (548)
124 PRK10939 autoinducer-2 (AI-2) 99.1 5.9E-10 1.3E-14 131.5 11.7 82 371-456 379-461 (520)
125 PRK10266 curved DNA-binding pr 99.0 4.1E-10 8.9E-15 122.3 6.9 73 767-841 198-289 (306)
126 TIGR01311 glycerol_kin glycero 99.0 8.9E-09 1.9E-13 120.8 18.4 203 230-457 231-452 (493)
127 TIGR01312 XylB D-xylulose kina 99.0 6.5E-09 1.4E-13 122.1 15.0 210 223-455 215-441 (481)
128 PRK14299 chaperone protein Dna 98.9 1E-09 2.2E-14 118.3 6.7 128 683-841 127-282 (291)
129 PF06406 StbA: StbA protein; 98.9 1.2E-08 2.5E-13 112.1 13.4 173 233-446 141-316 (318)
130 TIGR00241 CoA_E_activ CoA-subs 98.9 3.9E-08 8.5E-13 104.2 16.8 171 236-448 73-248 (248)
131 KOG0679|consensus 98.9 1.4E-07 3.1E-12 99.2 18.8 181 73-313 13-202 (426)
132 COG4972 PilM Tfp pilus assembl 98.8 4E-07 8.7E-12 94.7 21.2 189 191-432 106-316 (354)
133 PLN02669 xylulokinase 98.8 4.7E-08 1E-12 115.4 16.2 210 216-451 253-492 (556)
134 PF07520 SrfB: Virulence facto 98.8 1.5E-06 3.2E-11 103.7 25.8 337 118-460 331-843 (1002)
135 PF01556 CTDII: DnaJ C termina 98.7 7.2E-09 1.6E-13 88.7 3.4 51 785-835 27-78 (81)
136 COG5277 Actin and related prot 98.6 2.2E-06 4.8E-11 96.9 21.1 191 74-313 9-204 (444)
137 TIGR02627 rhamnulo_kin rhamnul 98.6 1.1E-07 2.3E-12 110.5 10.4 89 365-458 351-440 (454)
138 TIGR03192 benz_CoA_bzdQ benzoy 98.6 6.1E-06 1.3E-10 87.0 21.8 70 378-451 218-288 (293)
139 COG1069 AraB Ribulose kinase [ 98.6 8.1E-07 1.8E-11 98.8 14.9 227 221-459 232-486 (544)
140 COG1924 Activator of 2-hydroxy 98.4 6.1E-06 1.3E-10 87.8 16.7 73 375-451 317-390 (396)
141 PLN03165 chaperone protein dna 98.4 4E-07 8.7E-12 80.8 6.2 59 716-783 41-100 (111)
142 TIGR03286 methan_mark_15 putat 98.4 1.1E-05 2.3E-10 88.5 18.6 70 377-450 332-402 (404)
143 TIGR02259 benz_CoA_red_A benzo 98.4 2.9E-06 6.4E-11 91.4 13.5 69 377-449 358-432 (432)
144 PRK10719 eutA reactivating fac 98.4 2.3E-06 5E-11 94.8 12.7 82 206-304 90-183 (475)
145 KOG0714|consensus 98.3 4.5E-06 9.7E-11 91.7 13.5 104 783-887 198-305 (306)
146 TIGR02261 benz_CoA_red_D benzo 98.3 5.3E-05 1.1E-09 79.0 18.5 70 377-449 188-262 (262)
147 PF08841 DDR: Diol dehydratase 98.2 3.4E-05 7.4E-10 78.5 15.6 196 225-449 103-329 (332)
148 COG0554 GlpK Glycerol kinase [ 98.2 3.2E-05 6.9E-10 85.1 15.2 196 232-454 237-452 (499)
149 PRK13317 pantothenate kinase; 98.2 0.00022 4.7E-09 76.1 21.3 47 404-450 223-273 (277)
150 KOG2517|consensus 98.2 6.1E-05 1.3E-09 84.9 17.5 89 364-455 377-465 (516)
151 PRK10640 rhaB rhamnulokinase; 98.1 2E-05 4.3E-10 91.7 13.1 82 371-457 345-427 (471)
152 KOG0676|consensus 98.1 5.9E-05 1.3E-09 82.3 14.2 116 179-312 75-192 (372)
153 PF00684 DnaJ_CXXCXGXG: DnaJ c 98.0 2.1E-06 4.6E-11 69.9 1.7 46 712-765 11-66 (66)
154 COG4457 SrfB Uncharacterized p 98.0 0.0024 5.1E-08 72.2 24.7 92 364-460 741-855 (1014)
155 PF02782 FGGY_C: FGGY family o 97.8 6.3E-05 1.4E-09 77.0 8.6 83 365-451 113-196 (198)
156 COG1107 Archaea-specific RecJ- 97.5 5.4E-05 1.2E-09 84.1 3.6 14 871-884 258-271 (715)
157 TIGR02642 phage_xxxx uncharact 97.5 0.00013 2.8E-09 71.6 4.9 34 770-804 116-149 (186)
158 KOG0677|consensus 97.3 0.006 1.3E-07 61.4 14.2 223 204-454 101-364 (389)
159 TIGR03835 termin_org_DnaJ term 97.2 0.0011 2.4E-08 77.1 9.5 85 829-915 650-748 (871)
160 KOG0797|consensus 97.1 0.0059 1.3E-07 67.4 13.3 121 178-312 196-322 (618)
161 PLN03165 chaperone protein dna 97.1 0.00029 6.4E-09 62.8 2.8 40 718-768 54-99 (111)
162 KOG0680|consensus 97.1 0.035 7.5E-07 58.1 17.4 99 204-311 93-198 (400)
163 COG1107 Archaea-specific RecJ- 97.1 0.00051 1.1E-08 76.6 4.3 58 702-767 5-80 (715)
164 PF01869 BcrAD_BadFG: BadF/Bad 97.0 0.15 3.3E-06 54.8 22.5 71 376-449 196-271 (271)
165 KOG2813|consensus 96.9 0.001 2.3E-08 68.4 4.5 61 716-790 198-277 (406)
166 PF06277 EutA: Ethanolamine ut 96.6 0.017 3.6E-07 64.8 11.3 72 206-277 87-162 (473)
167 KOG0624|consensus 96.2 0.0046 1E-07 65.0 4.0 58 577-642 406-463 (504)
168 KOG0718|consensus 96.1 0.0025 5.4E-08 69.5 1.9 64 576-647 20-83 (546)
169 TIGR02642 phage_xxxx uncharact 96.1 0.004 8.6E-08 61.3 2.9 28 733-768 99-128 (186)
170 PRK03011 butyrate kinase; Prov 95.5 0.14 3.1E-06 56.9 12.6 46 403-448 295-344 (358)
171 PF14574 DUF4445: Domain of un 94.8 0.66 1.4E-05 52.3 15.1 59 365-424 290-348 (412)
172 PRK10854 exopolyphosphatase; P 94.8 0.39 8.5E-06 56.6 14.1 57 220-276 99-155 (513)
173 PTZ00341 Ring-infected erythro 94.6 0.018 3.9E-07 69.1 2.2 60 576-647 584-643 (1136)
174 KOG2531|consensus 94.5 0.089 1.9E-06 57.8 7.1 57 395-452 434-490 (545)
175 PRK11031 guanosine pentaphosph 94.5 0.39 8.4E-06 56.3 13.0 80 219-307 93-172 (496)
176 COG2214 CbpA DnaJ-class molecu 94.4 0.23 4.9E-06 51.6 10.1 48 789-838 180-227 (237)
177 COG0248 GppA Exopolyphosphatas 94.0 0.73 1.6E-05 53.3 13.6 94 183-277 52-148 (492)
178 KOG2813|consensus 94.0 0.028 6E-07 58.3 1.9 36 715-767 233-268 (406)
179 TIGR00744 ROK_glcA_fam ROK fam 93.9 5.1 0.00011 44.1 19.8 46 228-275 95-140 (318)
180 TIGR00555 panK_eukar pantothen 93.8 0.63 1.4E-05 49.6 11.7 45 403-447 230-278 (279)
181 COG4819 EutA Ethanolamine util 93.4 0.76 1.7E-05 48.6 11.1 71 207-277 90-164 (473)
182 KOG0681|consensus 93.4 0.76 1.7E-05 51.8 11.7 125 176-314 88-217 (645)
183 PF14450 FtsA: Cell division p 93.2 0.18 4E-06 46.7 5.7 50 260-312 1-54 (120)
184 KOG0716|consensus 93.1 0.052 1.1E-06 55.7 2.1 60 577-647 43-102 (279)
185 COG3426 Butyrate kinase [Energ 93.0 1 2.2E-05 46.8 10.9 47 401-447 294-344 (358)
186 PRK09557 fructokinase; Reviewe 92.8 17 0.00037 39.6 21.8 44 230-275 96-139 (301)
187 KOG0713|consensus 92.7 0.063 1.4E-06 57.1 2.1 225 594-834 50-328 (336)
188 KOG0715|consensus 92.3 0.13 2.8E-06 55.2 3.9 67 693-767 158-229 (288)
189 TIGR03706 exo_poly_only exopol 92.2 2.3 4.9E-05 46.5 13.6 54 221-276 89-143 (300)
190 PRK14878 UGMP family protein; 91.9 21 0.00046 39.4 20.8 91 203-304 65-158 (323)
191 PF00370 FGGY_N: FGGY family o 91.6 0.082 1.8E-06 56.0 1.5 21 72-92 1-21 (245)
192 PF13941 MutL: MutL protein 91.4 1 2.2E-05 51.4 9.9 40 236-276 227-266 (457)
193 PTZ00107 hexokinase; Provision 90.7 26 0.00057 40.5 20.6 64 212-275 189-254 (464)
194 COG1548 Predicted transcriptio 89.7 1.7 3.8E-05 44.4 8.6 72 188-277 75-149 (330)
195 COG2971 Predicted N-acetylgluc 89.3 34 0.00075 36.6 20.8 66 381-453 227-293 (301)
196 PRK05082 N-acetylmannosamine k 89.2 36 0.00078 36.8 21.2 41 229-271 95-135 (291)
197 PRK09604 UGMP family protein; 89.1 41 0.00088 37.3 23.2 52 403-454 254-311 (332)
198 KOG1385|consensus 89.0 0.9 1.9E-05 49.9 6.5 78 176-276 151-231 (453)
199 TIGR03123 one_C_unchar_1 proba 88.6 3.4 7.4E-05 45.0 10.7 20 258-277 128-147 (318)
200 PRK09605 bifunctional UGMP fam 88.3 52 0.0011 39.2 21.8 50 404-453 246-301 (535)
201 KOG0719|consensus 88.1 0.26 5.6E-06 49.4 1.6 61 576-645 25-85 (264)
202 COG1940 NagC Transcriptional r 88.1 45 0.00098 36.5 23.5 40 229-269 105-144 (314)
203 PTZ00340 O-sialoglycoprotein e 87.0 54 0.0012 36.3 20.7 92 203-305 70-164 (345)
204 COG2192 Predicted carbamoyl tr 86.7 70 0.0015 37.2 20.7 83 368-454 254-338 (555)
205 PF14450 FtsA: Cell division p 86.5 0.17 3.7E-06 46.9 -0.6 58 186-247 49-119 (120)
206 smart00842 FtsA Cell division 86.2 5.4 0.00012 40.1 10.1 30 218-247 157-186 (187)
207 TIGR03281 methan_mark_12 putat 86.2 3 6.6E-05 44.2 8.2 57 404-462 263-322 (326)
208 KOG0681|consensus 86.1 0.61 1.3E-05 52.6 3.3 48 404-451 559-614 (645)
209 PF07318 DUF1464: Protein of u 85.9 6.2 0.00013 43.0 10.7 52 402-454 259-318 (343)
210 TIGR03723 bact_gcp putative gl 85.7 60 0.0013 35.6 22.8 44 403-446 259-308 (314)
211 PF02541 Ppx-GppA: Ppx/GppA ph 85.7 3.3 7.3E-05 44.8 8.9 77 221-306 75-151 (285)
212 KOG0691|consensus 85.6 0.71 1.5E-05 49.3 3.4 63 575-648 15-77 (296)
213 TIGR00329 gcp_kae1 metallohydr 85.2 63 0.0014 35.3 19.4 95 203-305 69-166 (305)
214 PRK09698 D-allose kinase; Prov 85.0 63 0.0014 35.1 21.6 44 229-275 103-146 (302)
215 KOG2824|consensus 84.8 0.85 1.8E-05 47.3 3.4 45 717-767 230-274 (281)
216 PHA03102 Small T antigen; Revi 84.6 0.69 1.5E-05 44.4 2.5 55 578-647 20-74 (153)
217 smart00709 Zpr1 Duplicated dom 84.1 4 8.8E-05 39.6 7.6 23 783-805 78-100 (160)
218 PF02543 CmcH_NodU: Carbamoylt 83.5 17 0.00036 40.7 13.3 82 368-454 131-216 (360)
219 PLN02666 5-oxoprolinase 83.4 7 0.00015 50.7 11.4 76 370-448 454-531 (1275)
220 COG0533 QRI7 Metal-dependent p 82.5 47 0.001 36.3 15.4 216 178-428 40-286 (342)
221 PRK13310 N-acetyl-D-glucosamin 82.5 79 0.0017 34.4 24.5 46 228-275 94-139 (303)
222 cd03031 GRX_GRX_like Glutaredo 81.8 1.4 3.1E-05 42.2 3.4 23 717-745 100-122 (147)
223 COG1521 Pantothenate kinase ty 81.6 74 0.0016 33.5 16.9 44 372-415 181-224 (251)
224 KOG0717|consensus 79.9 0.73 1.6E-05 51.0 0.8 58 577-644 20-77 (508)
225 KOG2824|consensus 79.6 1.8 4E-05 44.9 3.5 38 734-782 230-275 (281)
226 TIGR00630 uvra excinuclease AB 79.3 1.2 2.7E-05 55.7 2.7 32 735-766 738-770 (924)
227 PF01968 Hydantoinase_A: Hydan 78.8 1.7 3.7E-05 47.1 3.3 43 232-276 53-95 (290)
228 PRK00976 hypothetical protein; 78.6 11 0.00024 41.0 9.2 57 403-461 263-321 (326)
229 COG0178 UvrA Excinuclease ATPa 77.9 1.9 4.2E-05 51.6 3.5 33 734-766 731-764 (935)
230 PF00226 DnaJ: DnaJ domain; I 77.6 0.76 1.6E-05 37.0 0.1 54 576-639 11-64 (64)
231 TIGR00310 ZPR1_znf ZPR1 zinc f 75.0 8.5 0.00018 38.6 6.7 23 783-805 77-100 (192)
232 PF03702 UPF0075: Uncharacteri 74.7 8.1 0.00017 43.1 7.2 73 376-451 260-337 (364)
233 COG5026 Hexokinase [Carbohydra 74.6 7.8 0.00017 43.2 6.8 55 219-277 183-239 (466)
234 PRK09585 anmK anhydro-N-acetyl 72.3 14 0.0003 41.2 8.2 68 381-451 267-338 (365)
235 PF08735 DUF1786: Putative pyr 70.9 61 0.0013 34.0 11.9 103 170-276 81-185 (254)
236 PRK00349 uvrA excinuclease ABC 70.4 2.7 5.8E-05 52.9 2.4 32 735-766 740-772 (943)
237 smart00732 YqgFc Likely ribonu 68.7 4.6 9.9E-05 35.6 3.0 18 73-90 3-20 (99)
238 COG0145 HyuA N-methylhydantoin 68.6 5 0.00011 48.5 4.0 41 236-277 257-297 (674)
239 cd03031 GRX_GRX_like Glutaredo 68.1 5.1 0.00011 38.4 3.3 38 733-781 99-145 (147)
240 PTZ00288 glucokinase 1; Provis 67.4 30 0.00065 39.3 9.7 20 71-90 26-45 (405)
241 KOG0550|consensus 67.1 4.1 8.9E-05 44.9 2.6 27 616-642 414-440 (486)
242 PRK00635 excinuclease ABC subu 66.4 3.5 7.7E-05 54.9 2.4 34 733-766 1607-1641(1809)
243 TIGR00340 zpr1_rel ZPR1-relate 65.3 12 0.00026 36.5 5.2 23 783-805 75-98 (163)
244 COG2377 Predicted molecular ch 64.6 86 0.0019 34.6 11.9 52 401-452 288-344 (371)
245 PLN02914 hexokinase 63.1 3E+02 0.0065 32.2 23.4 64 210-277 198-263 (490)
246 PLN02362 hexokinase 62.0 47 0.001 38.9 10.2 61 210-274 198-260 (509)
247 TIGR03722 arch_KAE1 universal 61.7 2.5E+02 0.0055 30.8 17.8 91 203-304 66-159 (322)
248 PLN02405 hexokinase 60.9 49 0.0011 38.6 10.0 63 211-277 199-263 (497)
249 PF03367 zf-ZPR1: ZPR1 zinc-fi 60.1 14 0.00031 35.9 4.8 33 734-766 2-41 (161)
250 PF03652 UPF0081: Uncharacteri 59.8 9.1 0.0002 36.1 3.3 21 72-92 2-22 (135)
251 PF00480 ROK: ROK family; Int 59.0 52 0.0011 32.5 8.9 44 230-275 91-134 (179)
252 TIGR00143 hypF [NiFe] hydrogen 58.7 19 0.00042 44.0 6.6 48 403-450 658-711 (711)
253 PRK03564 formate dehydrogenase 57.4 9.7 0.00021 41.2 3.4 42 716-765 187-236 (309)
254 KOG1369|consensus 56.7 12 0.00025 43.0 3.9 66 210-279 184-252 (474)
255 PF09538 FYDLN_acid: Protein o 56.4 7 0.00015 35.2 1.8 26 716-741 9-34 (108)
256 cd06007 R3H_DEXH_helicase R3H 56.1 35 0.00076 27.0 5.4 29 206-234 16-44 (59)
257 PRK14101 bifunctional glucokin 54.9 21 0.00046 43.5 6.2 22 226-247 101-122 (638)
258 KOG2708|consensus 54.8 2.5E+02 0.0055 28.7 13.2 73 369-447 224-300 (336)
259 TIGR00630 uvra excinuclease AB 53.2 6.3 0.00014 49.6 1.3 30 716-745 736-771 (924)
260 PRK00294 hscB co-chaperone Hsc 52.0 7.9 0.00017 38.2 1.5 63 572-640 13-75 (173)
261 KOG0721|consensus 51.4 7.9 0.00017 38.9 1.4 60 575-645 109-168 (230)
262 PRK13311 N-acetyl-D-glucosamin 51.3 1.4E+02 0.0031 31.5 11.2 45 229-275 95-139 (256)
263 COG0816 Predicted endonuclease 49.5 16 0.00034 34.7 3.0 21 71-91 2-22 (141)
264 PRK00109 Holliday junction res 49.5 17 0.00036 34.5 3.2 20 72-91 5-24 (138)
265 PRK01356 hscB co-chaperone Hsc 49.2 13 0.00029 36.4 2.6 59 574-640 13-71 (166)
266 PLN02596 hexokinase-like 48.9 5E+02 0.011 30.4 27.2 59 215-277 203-263 (490)
267 PRK04023 DNA polymerase II lar 47.9 12 0.00027 46.0 2.5 55 706-777 617-671 (1121)
268 COG2260 Predicted Zn-ribbon RN 47.8 14 0.00029 28.8 1.8 18 750-767 12-29 (59)
269 TIGR02300 FYDLN_acid conserved 47.1 13 0.00027 34.1 1.8 27 716-742 9-35 (129)
270 PRK14714 DNA polymerase II lar 46.9 13 0.00029 47.0 2.6 48 716-777 667-717 (1337)
271 PF08273 Prim_Zn_Ribbon: Zinc- 46.8 10 0.00023 27.3 1.0 13 734-746 4-16 (40)
272 cd02640 R3H_NRF R3H domain of 46.7 68 0.0015 25.5 5.7 42 193-235 5-46 (60)
273 PF14353 CpXC: CpXC protein 45.9 10 0.00023 35.4 1.3 12 755-766 38-49 (128)
274 PRK00039 ruvC Holliday junctio 45.1 17 0.00038 35.5 2.7 21 70-90 1-21 (164)
275 COG1198 PriA Primosomal protei 43.0 15 0.00033 44.6 2.3 40 387-432 235-274 (730)
276 PRK00349 uvrA excinuclease ABC 42.2 11 0.00024 47.5 1.1 30 716-745 738-773 (943)
277 PF03589 Antiterm: Antitermina 42.1 10 0.00022 33.3 0.5 12 755-766 32-43 (95)
278 PRK05014 hscB co-chaperone Hsc 41.9 11 0.00024 37.2 0.8 61 574-640 12-72 (171)
279 smart00778 Prim_Zn_Ribbon Zinc 41.9 18 0.00039 25.6 1.6 12 734-745 4-15 (37)
280 PRK05978 hypothetical protein; 41.3 12 0.00026 35.7 0.9 26 735-763 35-60 (148)
281 TIGR01562 FdhE formate dehydro 40.9 25 0.00053 38.1 3.3 42 716-765 184-234 (305)
282 COG0178 UvrA Excinuclease ATPa 40.3 12 0.00026 45.2 0.9 28 717-744 731-764 (935)
283 COG5349 Uncharacterized protei 40.1 9.6 0.00021 34.4 0.0 25 735-762 23-47 (126)
284 COG4012 Uncharacterized protei 39.9 1.7E+02 0.0037 30.6 8.7 71 235-314 207-277 (342)
285 PF14353 CpXC: CpXC protein 39.5 25 0.00055 32.8 2.8 13 733-745 38-50 (128)
286 PRK00398 rpoP DNA-directed RNA 39.3 19 0.00042 26.7 1.6 9 756-764 22-30 (46)
287 cd02639 R3H_RRM R3H domain of 39.3 40 0.00088 26.8 3.4 25 899-923 17-41 (60)
288 PF08792 A2L_zn_ribbon: A2L zi 38.9 19 0.00042 24.7 1.3 22 718-739 5-27 (33)
289 KOG0678|consensus 38.6 5.4E+02 0.012 28.1 12.3 96 206-310 108-207 (415)
290 PRK00635 excinuclease ABC subu 38.6 15 0.00033 49.3 1.5 28 717-744 1608-1641(1809)
291 PRK04023 DNA polymerase II lar 38.5 25 0.00054 43.5 3.1 54 694-766 620-674 (1121)
292 PRK13326 pantothenate kinase; 38.3 31 0.00067 36.7 3.5 23 70-92 5-27 (262)
293 PRK05580 primosome assembly pr 37.1 22 0.00048 43.6 2.5 40 717-765 391-431 (679)
294 PRK00292 glk glucokinase; Prov 36.9 30 0.00065 38.0 3.4 49 226-274 86-144 (316)
295 PF03589 Antiterm: Antitermina 36.4 16 0.00035 32.1 0.8 29 717-745 6-44 (95)
296 PF14803 Nudix_N_2: Nudix N-te 36.1 22 0.00048 24.6 1.3 27 736-762 3-29 (34)
297 PRK13321 pantothenate kinase; 35.8 33 0.00072 36.4 3.3 19 73-91 2-20 (256)
298 PF07092 DUF1356: Protein of u 35.6 22 0.00047 36.7 1.8 12 893-904 201-212 (238)
299 cd02641 R3H_Smubp-2_like R3H d 35.5 1.3E+02 0.0027 24.0 5.7 30 206-235 17-46 (60)
300 cd00529 RuvC_resolvase Hollida 35.5 48 0.001 32.1 4.1 17 73-89 2-18 (154)
301 PF13719 zinc_ribbon_5: zinc-r 35.2 19 0.0004 25.5 0.8 11 718-728 4-14 (37)
302 KOG2703|consensus 35.1 43 0.00093 36.8 3.9 22 784-805 118-139 (460)
303 TIGR03655 anti_R_Lar restricti 34.9 38 0.00082 26.1 2.6 10 757-766 28-37 (53)
304 PRK13318 pantothenate kinase; 34.7 35 0.00077 36.2 3.3 19 73-91 2-20 (258)
305 KOG0720|consensus 34.6 18 0.00038 40.6 1.0 55 576-642 246-300 (490)
306 COG1198 PriA Primosomal protei 34.1 32 0.00069 42.0 3.1 25 718-742 446-471 (730)
307 PF03833 PolC_DP2: DNA polymer 33.9 14 0.00029 44.8 0.0 47 716-778 655-701 (900)
308 PF00349 Hexokinase_1: Hexokin 33.7 59 0.0013 33.2 4.6 25 255-279 60-84 (206)
309 PRK14559 putative protein seri 33.1 28 0.00062 41.9 2.5 46 718-776 3-48 (645)
310 PRK00180 acetate kinase A/prop 33.0 2.2E+02 0.0048 32.3 9.3 25 403-427 323-348 (402)
311 PF13453 zf-TFIIB: Transcripti 32.6 45 0.00098 24.0 2.6 9 755-763 19-27 (41)
312 PRK13320 pantothenate kinase; 32.5 43 0.00093 35.3 3.4 21 71-91 2-22 (244)
313 PF03604 DNA_RNApol_7kD: DNA d 32.2 40 0.00086 23.0 2.0 23 719-741 3-25 (32)
314 smart00659 RPOLCX RNA polymera 30.9 33 0.00072 25.3 1.6 21 719-739 5-25 (44)
315 TIGR00714 hscB Fe-S protein as 30.8 28 0.00061 33.8 1.6 60 576-641 2-61 (157)
316 PRK14873 primosome assembly pr 30.8 31 0.00067 42.0 2.3 27 405-431 190-217 (665)
317 PRK13130 H/ACA RNA-protein com 30.7 32 0.0007 26.8 1.6 14 751-764 13-26 (56)
318 TIGR00016 ackA acetate kinase. 30.6 4.4E+02 0.0095 29.9 11.0 25 403-427 327-352 (404)
319 cd02646 R3H_G-patch R3H domain 30.6 1.3E+02 0.0027 23.7 5.0 41 191-234 3-43 (58)
320 cd06007 R3H_DEXH_helicase R3H 30.2 69 0.0015 25.4 3.4 25 899-923 16-40 (59)
321 TIGR00595 priA primosomal prot 29.3 35 0.00076 40.2 2.4 40 717-765 223-263 (505)
322 KOG1794|consensus 29.3 1.4E+02 0.0031 31.8 6.4 66 389-454 247-319 (336)
323 PRK14873 primosome assembly pr 29.1 43 0.00093 40.8 3.1 27 897-923 620-646 (665)
324 PRK03578 hscB co-chaperone Hsc 28.6 25 0.00054 34.9 0.8 61 574-640 17-77 (176)
325 cd02640 R3H_NRF R3H domain of 27.8 78 0.0017 25.2 3.3 24 900-923 18-41 (60)
326 cd02641 R3H_Smubp-2_like R3H d 27.5 75 0.0016 25.2 3.2 24 900-923 18-41 (60)
327 PRK12336 translation initiatio 27.4 2.6E+02 0.0056 28.4 7.9 46 755-801 119-165 (201)
328 cd02639 R3H_RRM R3H domain of 27.0 1.1E+02 0.0023 24.4 4.0 31 205-235 16-46 (60)
329 PF07092 DUF1356: Protein of u 26.9 31 0.00067 35.6 1.2 12 734-745 39-50 (238)
330 smart00271 DnaJ DnaJ molecular 26.1 43 0.00094 26.1 1.7 48 576-633 12-59 (60)
331 PF07066 DUF3882: Lactococcus 26.0 74 0.0016 30.0 3.3 23 70-92 1-28 (159)
332 PF13717 zinc_ribbon_4: zinc-r 25.6 34 0.00073 24.0 0.8 12 717-728 3-14 (36)
333 KOG3803|consensus 25.3 48 0.001 38.4 2.3 71 689-779 311-408 (968)
334 KOG0797|consensus 25.1 30 0.00065 39.4 0.8 51 404-454 527-592 (618)
335 TIGR00250 RNAse_H_YqgF RNAse H 24.9 48 0.001 31.1 2.0 17 74-90 1-17 (130)
336 PRK12380 hydrogenase nickel in 24.6 45 0.00098 30.4 1.7 27 716-743 70-96 (113)
337 TIGR01319 glmL_fam conserved h 24.5 48 0.001 37.9 2.2 61 217-277 193-268 (463)
338 PRK00420 hypothetical protein; 24.5 50 0.0011 29.9 1.9 23 717-739 24-46 (112)
339 PRK07058 acetate kinase; Provi 24.4 3.5E+02 0.0077 30.5 8.8 43 381-427 300-343 (396)
340 PRK14714 DNA polymerase II lar 24.4 62 0.0013 41.4 3.3 59 694-766 661-720 (1337)
341 PF12991 DUF3875: Domain of un 24.4 87 0.0019 24.1 2.8 24 892-915 26-51 (54)
342 COG3809 Uncharacterized protei 24.4 62 0.0013 26.8 2.2 8 756-763 22-29 (88)
343 COG2441 Predicted butyrate kin 23.9 3.2E+02 0.0069 29.0 7.6 52 403-454 273-335 (374)
344 PRK00564 hypA hydrogenase nick 23.9 47 0.001 30.5 1.6 28 716-743 71-98 (117)
345 PF07754 DUF1610: Domain of un 23.7 61 0.0013 20.6 1.6 7 756-762 17-23 (24)
346 TIGR00595 priA primosomal prot 23.3 63 0.0014 38.1 3.0 50 717-779 214-263 (505)
347 PF09723 Zn-ribbon_8: Zinc rib 23.3 65 0.0014 23.4 2.0 8 756-763 27-34 (42)
348 PF09862 DUF2089: Protein of u 23.3 59 0.0013 29.5 2.1 18 758-775 1-18 (113)
349 PRK03681 hypA hydrogenase nick 23.2 49 0.0011 30.2 1.7 27 717-743 71-97 (114)
350 PF07865 DUF1652: Protein of u 23.0 3E+02 0.0066 22.6 5.9 49 542-591 15-66 (69)
351 PLN02377 3-ketoacyl-CoA syntha 22.7 1.6E+02 0.0036 34.5 6.2 57 374-430 164-221 (502)
352 PF08274 PhnA_Zn_Ribbon: PhnA 22.6 41 0.00088 22.6 0.7 22 718-739 4-25 (30)
353 TIGR02707 butyr_kinase butyrat 22.0 74 0.0016 35.5 3.1 44 403-446 293-340 (351)
354 PF14574 DUF4445: Domain of un 22.0 3.8E+02 0.0083 30.6 8.7 55 377-431 57-111 (412)
355 PF03646 FlaG: FlaG protein; 21.5 2.1E+02 0.0046 25.5 5.5 44 541-591 54-98 (107)
356 PRK12408 glucokinase; Provisio 21.3 62 0.0013 35.9 2.3 41 228-268 106-156 (336)
357 KOG1386|consensus 21.3 8E+02 0.017 28.4 10.8 22 256-277 160-181 (501)
358 smart00709 Zpr1 Duplicated dom 21.1 40 0.00086 32.9 0.7 25 854-882 76-100 (160)
359 TIGR00100 hypA hydrogenase nic 20.9 61 0.0013 29.6 1.8 26 717-743 71-96 (115)
360 PLN03173 chalcone synthase; Pr 20.7 2.7E+02 0.0059 31.6 7.3 53 379-431 99-152 (391)
361 PF08392 FAE1_CUT1_RppA: FAE1/ 20.5 2.6E+02 0.0056 30.1 6.6 46 386-431 87-133 (290)
362 PF00349 Hexokinase_1: Hexokin 20.3 91 0.002 31.9 3.1 35 216-250 167-204 (206)
363 PLN03172 chalcone synthase fam 20.2 2.7E+02 0.0059 31.6 7.2 58 374-431 94-152 (393)
364 PF02075 RuvC: Crossover junct 20.1 51 0.0011 31.7 1.2 18 73-90 1-18 (149)
No 1
>KOG0100|consensus
Probab=100.00 E-value=1.9e-111 Score=862.12 Aligned_cols=566 Identities=55% Similarity=0.861 Sum_probs=541.3
Q ss_pred cCCceEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCc
Q psy2902 69 IMSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNE 148 (945)
Q Consensus 69 ~m~~viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~ 148 (945)
-|..+||||+|||||||+++.+|..++|.|.+|++.+||+|+|.++ ++++|.+|.+++..||++++++.|||+|+++++
T Consensus 34 ~~gtvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~d-erLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d 112 (663)
T KOG0100|consen 34 KLGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDD-ERLIGDAAKNQLTSNPENTIFDAKRLIGRKFND 112 (663)
T ss_pred ccceEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccc-hhhhhhHhhcccccCcccceechHHHhCcccCC
Confidence 3688999999999999999999999999999999999999999877 899999999999999999999999999999999
Q ss_pred HHHHhhhcCCCeeEEecCC-CceEEEEC-C--eeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHH
Q psy2902 149 KEVQKDISLMPYKIVKADN-GDAWISVR-G--KKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATK 224 (945)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~--~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~ 224 (945)
+.+++++++|||+++..++ .++-+.+. | +.++|+++++|+|..+++.|+.+++..+.++|+||||||++.||++++
T Consensus 113 ~~vq~Dik~~Pfkvv~k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATK 192 (663)
T KOG0100|consen 113 KSVQKDIKFLPFKVVNKDGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATK 192 (663)
T ss_pred hhhhhhhhcCceEEEcCCCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhhc
Confidence 9999999999999996433 34455555 2 579999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHH
Q psy2902 225 DAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQ 304 (945)
Q Consensus 225 ~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~ 304 (945)
+|..+|||+++++|+||+|||++|+++.. ....++||||+||||||+|++.+ .++.|+++++.|+.++||++||.
T Consensus 193 DAGtIAgLnV~RIiNePTaAAIAYGLDKk-~gEknilVfDLGGGTFDVSlLtI----dnGVFeVlaTnGDThLGGEDFD~ 267 (663)
T KOG0100|consen 193 DAGTIAGLNVVRIINEPTAAAIAYGLDKK-DGEKNILVFDLGGGTFDVSLLTI----DNGVFEVLATNGDTHLGGEDFDQ 267 (663)
T ss_pred ccceeccceEEEeecCccHHHHHhccccc-CCcceEEEEEcCCceEEEEEEEE----cCceEEEEecCCCcccCccchHH
Confidence 99999999999999999999999999986 66789999999999999999999 89999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHH
Q psy2902 305 RIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELIT 384 (945)
Q Consensus 305 ~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~ 384 (945)
++++|+.+.|+++.+.|++.+.+++.+|+.+||++|+.||++.++.+.++.+.++. +++-++||+.||++..+++.
T Consensus 268 rvm~~fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~----DfSEtLtRAkFEElNmDLFr 343 (663)
T KOG0100|consen 268 RVMEYFIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGV----DFSETLTRAKFEELNMDLFR 343 (663)
T ss_pred HHHHHHHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccccc----cccchhhhhHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999988776 89999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHh-CCCCCCCCCCCchhhhhHHHhhhhccC--CCCceEE
Q psy2902 385 RTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFF-GKDPRRDINPDEAVAVGAAIQGSVLSG--DRKDLLL 461 (945)
Q Consensus 385 ~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f-g~~~~~~~~p~~avA~GAa~~a~~~~~--~~~~~~~ 461 (945)
.++.++.++|+++++...+|+.|+||||++|+|.+|++|+++| |++.....||++|||+|||.+|..++| ...++++
T Consensus 344 ~TlkPv~kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGee~t~divL 423 (663)
T KOG0100|consen 344 KTLKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGEEDTGDIVL 423 (663)
T ss_pred HhhHHHHHHHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccccCcCcEEE
Confidence 9999999999999999999999999999999999999999999 888999999999999999999999999 5678999
Q ss_pred EeeccceeeEEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCCCCCCCCcCe
Q psy2902 462 LDVTPLSLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQ 541 (945)
Q Consensus 462 ~~~~~~s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~~~~~~~~~~ 541 (945)
.|++|+++||++.+|.|..||+||+.||+++++.|++..|+|+.+.|++|+|++++..+|+.||.|.+.++||+|+|.|+
T Consensus 424 LDv~pLtlGIETvGGVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpq 503 (663)
T KOG0100|consen 424 LDVNPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQ 503 (663)
T ss_pred EeeccccceeeeecceeeccccCCcccCccccceeeecccCCceEEEEEeeccccccccccccccccccCCCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCccEEEEEeecCCCceeEEEeccC-CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchh
Q psy2902 542 IEVTFDIDANGILHVTAKDKKTGKENKITIKAN-SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSL 620 (945)
Q Consensus 542 i~v~~~~d~~g~l~v~a~~~~~g~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~ 620 (945)
|+|+|++|.||+|+|+|.|+++|++.+++|+++ ..||+|+|++|++++++++++|+..+++.+++|.+|+|.|.+++.+
T Consensus 504 IEVtFevDangiL~VsAeDKgtg~~~kitItNd~~rLt~EdIerMv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi 583 (663)
T KOG0100|consen 504 IEVTFEVDANGILQVSAEDKGTGKKEKITITNDKGRLTPEDIERMVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQI 583 (663)
T ss_pred EEEEEEEccCceEEEEeeccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhcc
Confidence 999999999999999999999999999999976 4699999999999999999999999999999999999999999988
Q ss_pred hh-hhhhhccChhHHHHHHHHhccc
Q psy2902 621 KI-KEAYEVLSDSEKRIIYDQYGHA 644 (945)
Q Consensus 621 ~~-~~~~~~l~~~~k~~~~d~~~~~ 644 (945)
.. +.....|++++|+.+.+...+.
T Consensus 584 ~dkekLg~Kl~~edKe~~e~av~e~ 608 (663)
T KOG0100|consen 584 GDKEKLGGKLSDEDKETIEDAVEEA 608 (663)
T ss_pred CchhHhcccCChhHHHHHHHHHHHH
Confidence 54 4577899999999999987764
No 2
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=5.2e-90 Score=810.77 Aligned_cols=563 Identities=59% Similarity=0.942 Sum_probs=527.1
Q ss_pred CceEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcHH
Q psy2902 71 SKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEKE 150 (945)
Q Consensus 71 ~~viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~~ 150 (945)
+.+||||||||||+||+++++.++++.|..|.+.+||+|+|+++ .+++|..|..+...+|.++++++||+||++++++.
T Consensus 27 ~~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~~~-~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~ 105 (657)
T PTZ00186 27 GDVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGS-EKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEH 105 (657)
T ss_pred ceEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEECCC-CEEEcHHHHHhhhhCchhHHHHHHHHhccccccHH
Confidence 35899999999999999999999999999999999999999855 68999999999999999999999999999999999
Q ss_pred HHhhhcCCCeeEEecCCCceEEEE-CCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHHH
Q psy2902 151 VQKDISLMPYKIVKADNGDAWISV-RGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRI 229 (945)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~ 229 (945)
++.....+||+++...++...+.. .+..++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++||++
T Consensus 106 v~~~~~~~p~~vv~~~~~~~~i~~~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa~~ 185 (657)
T PTZ00186 106 IQKDIKNVPYKIVRAGNGDAWVQDGNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTI 185 (657)
T ss_pred HHHhhccCcEEEEEcCCCceEEEeCCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHHHH
Confidence 999999999999988888777765 4678999999999999999999999999999999999999999999999999999
Q ss_pred cCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHH
Q psy2902 230 AGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309 (945)
Q Consensus 230 AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~ 309 (945)
|||+++++++||+|||++|+... ..+..++|||+||||||+|++++ .++.++++++.|+.++||.+||.+|++|
T Consensus 186 AGl~v~rlInEPtAAAlayg~~~--~~~~~vlV~DlGGGT~DvSil~~----~~g~~~V~at~Gd~~LGG~DfD~~l~~~ 259 (657)
T PTZ00186 186 AGLNVIRVVNEPTAAALAYGMDK--TKDSLIAVYDLGGGTFDISVLEI----AGGVFEVKATNGDTHLGGEDFDLALSDY 259 (657)
T ss_pred cCCCeEEEEcChHHHHHHHhccC--CCCCEEEEEECCCCeEEEEEEEE----eCCEEEEEEecCCCCCCchhHHHHHHHH
Confidence 99999999999999999999876 35689999999999999999999 6789999999999999999999999999
Q ss_pred HHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHH
Q psy2902 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEP 389 (945)
Q Consensus 310 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~ 389 (945)
+.++|...++.++..+.+++.+|+.+||++|+.||....+.+.++.+..+.++..++++.|||++|+++++++++++..+
T Consensus 260 ~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~~ 339 (657)
T PTZ00186 260 ILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIAP 339 (657)
T ss_pred HHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHHH
Confidence 99999998888888889999999999999999999999999998876554434446889999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhccCCCCceEEEeecccee
Q psy2902 390 CRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSL 469 (945)
Q Consensus 390 i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~~~~~~~~~~~~~~~s~ 469 (945)
+.++|++++++..+|+.|+||||+||||.|+++|+++|+.++....||++|||+|||++|+++++..+++.+.|++|++|
T Consensus 340 v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAAi~a~~l~~~~~~~~l~Dv~p~sl 419 (657)
T PTZ00186 340 CKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRGDVKGLVLLDVTPLSL 419 (657)
T ss_pred HHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHHHHHHHhccccCceEEEeeccccc
Confidence 99999999999999999999999999999999999999988888999999999999999999999888999999999999
Q ss_pred eEEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCCCCCCCCcCeEEEEEEEC
Q psy2902 470 GIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549 (945)
Q Consensus 470 gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~~~~~~~~~~i~v~~~~d 549 (945)
||++.++.+.+||++|++||++++.+|++..|||+.+.|.||||++..+.+|..||++.|.++|+.|+|.++|+|+|++|
T Consensus 420 gie~~~g~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe~~~~~~n~~lg~~~l~~ip~~~~G~~~I~Vtf~iD 499 (657)
T PTZ00186 420 GIETLGGVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDID 499 (657)
T ss_pred cceecCCEEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEecccccccccccceEEEcCCCCCCCCCCcEEEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEEeecCCCceeEEEeccCCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhcc
Q psy2902 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVL 629 (945)
Q Consensus 550 ~~g~l~v~a~~~~~g~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l 629 (945)
.||+|+|+|.+..||+..+++|..+.+||++||+++.++++++..+|+..+++.+++|.++.+++..++.+.. . ..+
T Consensus 500 ~nGiL~V~a~d~~tg~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~ 576 (657)
T PTZ00186 500 ANGICHVTAKDKATGKTQNITITANGGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQLGE--W-KYV 576 (657)
T ss_pred CCCEEEEEEEEccCCcEEEEEeccCccCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh--h-ccC
Confidence 9999999999999999999999988889999999999999999999999999999999999999888877741 1 457
Q ss_pred ChhHHHHHHHHhcc
Q psy2902 630 SDSEKRIIYDQYGH 643 (945)
Q Consensus 630 ~~~~k~~~~d~~~~ 643 (945)
+.+++..+.+.+..
T Consensus 577 ~~~~~~~~~~~~~~ 590 (657)
T PTZ00186 577 SDAEKENVKTLVAE 590 (657)
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777666543
No 3
>KOG0102|consensus
Probab=100.00 E-value=5.1e-91 Score=740.41 Aligned_cols=563 Identities=64% Similarity=0.981 Sum_probs=546.4
Q ss_pred ceEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcHHH
Q psy2902 72 KIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEKEV 151 (945)
Q Consensus 72 ~viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~~~ 151 (945)
.++|||+|||+|+++++.+..|.++.|.+|.+.+||+++|..++++++|..|..+...+|.++++.-||++|++++++++
T Consensus 28 ~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~d~ev 107 (640)
T KOG0102|consen 28 KVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFDDPEV 107 (640)
T ss_pred ceeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhccCHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcC
Q psy2902 152 QKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAG 231 (945)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AG 231 (945)
+.+.+..||+++...++++|++..|..++|.++.+++|.+++++|+.+++..+..+|+||||||++.||+++++|.++||
T Consensus 108 q~~~k~vpyKiVk~~ngdaw~e~~G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTkdag~iag 187 (640)
T KOG0102|consen 108 QKDIKQVPYKIVKASNGDAWVEARGKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATKDAGQIAG 187 (640)
T ss_pred HHHHHhCCcceEEccCCcEEEEeCCeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhHhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHH
Q psy2902 232 LEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYIL 311 (945)
Q Consensus 232 l~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~ 311 (945)
++++++++||+|||++|+++.. ....++|||+||||+|++++.+ .++.+++.++.++.++||++||..+++|+.
T Consensus 188 l~vlrvineptaaalaygld~k--~~g~iaV~dLgggtfdisilei----~~gvfevksTngdtflggedfd~~~~~~~v 261 (640)
T KOG0102|consen 188 LNVLRVINEPTAAALAYGLDKK--EDGVIAVFDLGGGTFDISILEI----EDGVFEVKSTNGDTHLGGEDFDNALVRFIV 261 (640)
T ss_pred ceeeccCCccchhHHhhccccc--CCCceEEEEcCCceeeeeeehh----ccceeEEEeccCccccChhHHHHHHHHHHH
Confidence 9999999999999999999985 3788999999999999999999 889999999999999999999999999999
Q ss_pred HHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHHHH
Q psy2902 312 DEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEPCR 391 (945)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~ 391 (945)
..|....+.++..+..++.+|.+++|++|+.||+.....+.+|++..+..++..+++.+||.+||+++.+++++.++++.
T Consensus 262 ~~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~p~~ 341 (640)
T KOG0102|consen 262 SEFKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTIEPCK 341 (640)
T ss_pred HhhhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhccCCCCceEEEeeccceeeE
Q psy2902 392 IAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGI 471 (945)
Q Consensus 392 ~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~~~~~~~~~~~~~~~s~gi 471 (945)
.+|++|++...||+.|+|+||.+|+|.+++.+++.||.......||+++||.|||++++.++|+++++++.|++|+++||
T Consensus 342 ~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava~GAaiqggvl~geVkdvlLLdVtpLsLgi 421 (640)
T KOG0102|consen 342 KALRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVAGGAAIQGGVLSGEVKDVLLLDVTPLSLGI 421 (640)
T ss_pred HHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhccchhhccchhhccccceeeeecchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCCCCCCCCcCeEEEEEEECCC
Q psy2902 472 ETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDIDAN 551 (945)
Q Consensus 472 ~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~~~~~~~~~~i~v~~~~d~~ 551 (945)
++.+|.|..||++|+.||+.++..|++..|+|+.+.|.+|+|++++..+|..+|.|.+.++||.|+|.++|+|+|.+|+|
T Consensus 422 etlggvft~Li~rnttIptkksqvfstaadgqt~V~ikv~qgere~~~dnk~lG~f~l~gipp~pRgvpqieVtfDIdan 501 (640)
T KOG0102|consen 422 ETLGGVFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPRGVPQIEVTFDIDAN 501 (640)
T ss_pred HhhhhhheecccCCcccCchhhhheeecccCCceEEEEeeechhhhhccCcccceeeecccCCCCCCCCceeEEEeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEeecCCCceeEEEeccCCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccCh
Q psy2902 552 GILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSD 631 (945)
Q Consensus 552 g~l~v~a~~~~~g~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~ 631 (945)
||++|+|.|..||+.+++++....+||++||+.|+++++++...|+..++..+.+|.+++.+++..+.+. ++.+.++.
T Consensus 502 GI~~vsA~dk~t~K~qsi~i~~sggLs~~ei~~mV~eaer~~~~d~~~~~~ie~~nka~s~~~~te~~~~--~~~~~~~~ 579 (640)
T KOG0102|consen 502 GIGTVSAKDKGTGKSQSITIASSGGLSKDEIELMVGEAERLASTDKEKREAIETKNKADSIIYDTEKSLK--EFEEKIPA 579 (640)
T ss_pred ceeeeehhhcccCCccceEEeecCCCCHHHHHHHHHHHHHHHhhhHHHHHHhhhhcchhheecCchhhhh--hhhhhCcH
Confidence 9999999999999999999999999999999999999999999999999999999999999999888876 56677777
Q ss_pred hHHHHHHHHhc
Q psy2902 632 SEKRIIYDQYG 642 (945)
Q Consensus 632 ~~k~~~~d~~~ 642 (945)
++..++.+.+.
T Consensus 580 ~~~~~i~~~i~ 590 (640)
T KOG0102|consen 580 EECEKLEEKIS 590 (640)
T ss_pred HHHHHHHHHHH
Confidence 66666666554
No 4
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=7.5e-89 Score=805.32 Aligned_cols=566 Identities=52% Similarity=0.882 Sum_probs=529.3
Q ss_pred CCceEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcH
Q psy2902 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEK 149 (945)
Q Consensus 70 m~~viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~ 149 (945)
|+++||||||||||+||++.+|.+.++.|..|.+.+||+|+|..++++++|..|..+...+|.++++++||+||+++.+
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~- 79 (668)
T PRK13410 1 MGRIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE- 79 (668)
T ss_pred CCcEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh-
Confidence 5678999999999999999999999999999999999999998777899999999999999999999999999998865
Q ss_pred HHHhhhcCCCeeEEecCCCceEEEE--CCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHH
Q psy2902 150 EVQKDISLMPYKIVKADNGDAWISV--RGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAG 227 (945)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa 227 (945)
++.....+||.++...++.+.+.+ .+..++|+++++++|++|++.|+.+++..+.++|||||++|++.||+++++||
T Consensus 80 -~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 158 (668)
T PRK13410 80 -LDPESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAG 158 (668)
T ss_pred -hHHhhccCCeEEEECCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHH
Confidence 455667899999988888887776 45789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHH
Q psy2902 228 RIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRII 307 (945)
Q Consensus 228 ~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~ 307 (945)
+.|||+++++++||+|||++|+... ..+.++||||+||||+|+|++++ .++.++++++.++..+||.+||.+|+
T Consensus 159 ~~AGl~v~~li~EPtAAAlayg~~~--~~~~~vlV~DlGgGT~Dvsv~~~----~~g~~~V~at~gd~~lGG~dfD~~l~ 232 (668)
T PRK13410 159 RIAGLEVERILNEPTAAALAYGLDR--SSSQTVLVFDLGGGTFDVSLLEV----GNGVFEVKATSGDTQLGGNDFDKRIV 232 (668)
T ss_pred HHcCCCeEEEecchHHHHHHhcccc--CCCCEEEEEECCCCeEEEEEEEE----cCCeEEEEEeecCCCCChhHHHHHHH
Confidence 9999999999999999999999876 45788999999999999999999 67899999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHH
Q psy2902 308 DYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTI 387 (945)
Q Consensus 308 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~ 387 (945)
+|+.++|..+++.++..+++++.+|+.+||++|+.||....+.+.++.+..+..++.++...|||++|++++.++++++.
T Consensus 233 ~~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~ 312 (668)
T PRK13410 233 DWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRLL 312 (668)
T ss_pred HHHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHH
Confidence 99999999888888888899999999999999999999999999998876554455688999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhccCCCCceEEEeeccc
Q psy2902 388 EPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPL 467 (945)
Q Consensus 388 ~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~~~~~~~~~~~~~~~ 467 (945)
.+++++|+.+++.+.+|+.|+||||+||||+|+++|++.|+.++....||++|||+|||++|+++++..+++.+.|++|+
T Consensus 313 ~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~~~~~~l~Dv~p~ 392 (668)
T PRK13410 313 RPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGILAGELKDLLLLDVTPL 392 (668)
T ss_pred HHHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHHHHHHhhcccccceeEEeeccc
Confidence 99999999999999999999999999999999999999999888889999999999999999999998899999999999
Q ss_pred eeeEEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCCCCCCCCcCeEEEEEE
Q psy2902 468 SLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFD 547 (945)
Q Consensus 468 s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~~~~~~~~~~i~v~~~ 547 (945)
++|+++.+|.+.+||++|++||++++.+|++..|+|+.+.|.||+|++....+|..||++.|.++|+.+.|.++|+|+|+
T Consensus 393 slgie~~~g~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~I~v~f~ 472 (668)
T PRK13410 393 SLGLETIGGVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAFD 472 (668)
T ss_pred cccceecCCeeEEEEeCCCcccccccccceeccCCCcEEEEEEEeeccccccCCceEEEEEEeCCCCCCCCCCeEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCccEEEEEeecCCCceeEEEeccCCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhh--hhh
Q psy2902 548 IDANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKI--KEA 625 (945)
Q Consensus 548 ~d~~g~l~v~a~~~~~g~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~--~~~ 625 (945)
+|.||+|+|++.+..+|++..++|....+||++||++++++++++..+|+..+++.+++|.+|++++.+++.+.. +++
T Consensus 473 id~nGiL~V~a~d~~tg~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~d~~~~~~~e~kn~~e~~i~~~~~~l~~~~~~~ 552 (668)
T PRK13410 473 IDANGILQVSATDRTTGREQSVTIQGASTLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRALTLIAQAERRLRDAALEF 552 (668)
T ss_pred ECCCcEEEEEEEEcCCCceeeeeecccccCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999999999877889999999999999999999999999999999999999999999862 246
Q ss_pred hhccChhHHHHHHHHhcc
Q psy2902 626 YEVLSDSEKRIIYDQYGH 643 (945)
Q Consensus 626 ~~~l~~~~k~~~~d~~~~ 643 (945)
.+++++++++++...+.+
T Consensus 553 ~~~~~~~~~~~~~~~l~~ 570 (668)
T PRK13410 553 GPYFAERQRRAVESAMRD 570 (668)
T ss_pred hccCCHHHHHHHHHHHHH
Confidence 678888888877666543
No 5
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=1.3e-88 Score=806.91 Aligned_cols=567 Identities=63% Similarity=0.993 Sum_probs=537.6
Q ss_pred CCceEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcH
Q psy2902 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEK 149 (945)
Q Consensus 70 m~~viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~ 149 (945)
|+.+||||||||||+||++.++.++++.|..|++.+||+|+|+.++++++|..|..+...+|.++++++||+||++++++
T Consensus 40 ~~~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 119 (663)
T PTZ00400 40 TGDIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDED 119 (663)
T ss_pred cCcEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcH
Confidence 55689999999999999999999999999999999999999987778999999999999999999999999999999999
Q ss_pred HHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHHH
Q psy2902 150 EVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRI 229 (945)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~ 229 (945)
.++.....+||.++...++...+.+.+..++|+++++++|++|++.|+.+++..+.++|||||++|++.||+++++||+.
T Consensus 120 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~ 199 (663)
T PTZ00400 120 ATKKEQKILPYKIVRASNGDAWIEAQGKKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKI 199 (663)
T ss_pred HHHhhhccCCeEEEecCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHH
Confidence 99999999999999988888899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHH
Q psy2902 230 AGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309 (945)
Q Consensus 230 AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~ 309 (945)
|||+++++++||+|||++|+... ..+..+||||+||||+|+|++++ .++.++++++.|+..+||.+||..|++|
T Consensus 200 AGl~v~~li~EptAAAlay~~~~--~~~~~vlV~DlGgGT~DvSv~~~----~~g~~~v~a~~gd~~LGG~d~D~~l~~~ 273 (663)
T PTZ00400 200 AGLDVLRIINEPTAAALAFGMDK--NDGKTIAVYDLGGGTFDISILEI----LGGVFEVKATNGNTSLGGEDFDQRILNY 273 (663)
T ss_pred cCCceEEEeCchHHHHHHhcccc--CCCcEEEEEeCCCCeEEEEEEEe----cCCeeEEEecccCCCcCHHHHHHHHHHH
Confidence 99999999999999999999875 45789999999999999999998 6788999999999999999999999999
Q ss_pred HHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHH
Q psy2902 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEP 389 (945)
Q Consensus 310 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~ 389 (945)
+.++|.+.++.++..+++++.+|+.+||++|+.||.+..+.+.++.+..+..+..++.+.|||++|+++++++++++.++
T Consensus 274 l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~~~ 353 (663)
T PTZ00400 274 LIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTIEP 353 (663)
T ss_pred HHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHHHH
Confidence 99999988888888889999999999999999999999888888877655444568899999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhccCCCCceEEEeecccee
Q psy2902 390 CRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSL 469 (945)
Q Consensus 390 i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~~~~~~~~~~~~~~~s~ 469 (945)
+.++|+++++.+.+|+.|+||||+|++|+|+++|++.|+.++....||+++||+|||++|+++++..+++.+.|++|++|
T Consensus 354 i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~aa~l~~~~~~~~~~dv~p~sl 433 (663)
T PTZ00400 354 CEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAGVLKGEIKDLLLLDVTPLSL 433 (663)
T ss_pred HHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeeccHHHHHhhcCCccceEEEeccccce
Confidence 99999999999999999999999999999999999999988888999999999999999999999888999999999999
Q ss_pred eEEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCCCCCCCCcCeEEEEEEEC
Q psy2902 470 GIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549 (945)
Q Consensus 470 gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~~~~~~~~~~i~v~~~~d 549 (945)
||++.++.+.+||++|++||++++.+|++..|+|+.+.|.||+|++....+|..||++.|.++|+.+.|.++|+|+|++|
T Consensus 434 gi~~~~g~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id 513 (663)
T PTZ00400 434 GIETLGGVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVD 513 (663)
T ss_pred EEEecCCeeEEEEecCccCCccceeeeeeccCCCceEEEEEEEecCccCCcCceeEEEEEcCCCCCCCCCceEEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEEeecCCCceeEEEeccCCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhcc
Q psy2902 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVL 629 (945)
Q Consensus 550 ~~g~l~v~a~~~~~g~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l 629 (945)
.||+|+|++.+..+|+...++++...++|++++++++++++++..+|+..+++.+++|.+|+++|.+++.+. ++.+.+
T Consensus 514 ~~Gil~v~a~~~~~~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~--e~~~~~ 591 (663)
T PTZ00400 514 ANGIMNISAVDKSTGKKQEITIQSSGGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLS--DLKDKI 591 (663)
T ss_pred CCCCEEEEEEeccCCcEEEEEeeccccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhC
Confidence 999999999999999999999987788999999999999999999999999999999999999999999986 477889
Q ss_pred ChhHHHHHHHHhccc
Q psy2902 630 SDSEKRIIYDQYGHA 644 (945)
Q Consensus 630 ~~~~k~~~~d~~~~~ 644 (945)
+++++.++.+.+.+.
T Consensus 592 s~~ere~i~~~l~~~ 606 (663)
T PTZ00400 592 SDADKDELKQKITKL 606 (663)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999988877654
No 6
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=3.4e-88 Score=803.21 Aligned_cols=566 Identities=56% Similarity=0.894 Sum_probs=530.1
Q ss_pred CCceEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcH
Q psy2902 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEK 149 (945)
Q Consensus 70 m~~viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~ 149 (945)
|+.+||||||||||+||++.+|.+.++.|.+|++.+||+|+|++++++++|..|..+...+|.++++++|||||++++++
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 80 (653)
T PRK13411 1 MGKVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDT 80 (653)
T ss_pred CCcEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccch
Confidence 55689999999999999999999999999999999999999987778999999999999999999999999999999886
Q ss_pred HHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHHH
Q psy2902 150 EVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRI 229 (945)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~ 229 (945)
. .....+||.++...++.+.+.+.+..++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++||+.
T Consensus 81 ~--~~~~~~~~~~v~~~~~~~~~~i~~~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~ 158 (653)
T PRK13411 81 E--EERSRVPYTCVKGRDDTVNVQIRGRNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTI 158 (653)
T ss_pred h--HHhhcCCceEEecCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHHHHH
Confidence 4 34578999999888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHH
Q psy2902 230 AGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309 (945)
Q Consensus 230 AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~ 309 (945)
|||+++++++||+|||++|+.... ..+.++||||+||||+|+|++++ .++.++++++.|+.++||.+||..|++|
T Consensus 159 AGl~v~~li~EPtAAAl~y~~~~~-~~~~~vlV~DlGgGT~dvsi~~~----~~~~~~V~at~gd~~LGG~dfD~~l~~~ 233 (653)
T PRK13411 159 AGLEVLRIINEPTAAALAYGLDKQ-DQEQLILVFDLGGGTFDVSILQL----GDGVFEVKATAGNNHLGGDDFDNCIVDW 233 (653)
T ss_pred cCCCeEEEecchHHHHHHhccccc-CCCCEEEEEEcCCCeEEEEEEEE----eCCEEEEEEEecCCCcCHHHHHHHHHHH
Confidence 999999999999999999988653 35678999999999999999999 6788999999999999999999999999
Q ss_pred HHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHH
Q psy2902 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEP 389 (945)
Q Consensus 310 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~ 389 (945)
+.++|....+.++..+++++.+|+.+||++|+.||....+.+.++.+..+..++.++++.|||++|++++.|+++++..+
T Consensus 234 l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~~~ 313 (653)
T PRK13411 234 LVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEATIEP 313 (653)
T ss_pred HHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHH
Confidence 99999988888888889999999999999999999999999998877654334467899999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhC-CCCCCCCCCCchhhhhHHHhhhhccCCCCceEEEeeccce
Q psy2902 390 CRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFG-KDPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLS 468 (945)
Q Consensus 390 i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg-~~~~~~~~p~~avA~GAa~~a~~~~~~~~~~~~~~~~~~s 468 (945)
+.++|+++++...+|+.|+||||+||+|+|+++|++.|+ ..+....||++|||+|||++|+++++..+++.+.|++|++
T Consensus 314 i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~~~~~~~~dv~p~s 393 (653)
T PRK13411 314 MQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGEVKDLLLLDVTPLS 393 (653)
T ss_pred HHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCCccceeeeecccce
Confidence 999999999999999999999999999999999999996 5677889999999999999999999988899999999999
Q ss_pred eeEEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCCCCCCCCcCeEEEEEEE
Q psy2902 469 LGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDI 548 (945)
Q Consensus 469 ~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~~~~~~~~~~i~v~~~~ 548 (945)
||+++.++.+.+||++|++||++++.+|++..|+|+.+.|.||+|++....+|..||.+.|.++|+.+.|.++|+|+|++
T Consensus 394 lgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~i 473 (653)
T PRK13411 394 LGIETLGEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEI 473 (653)
T ss_pred eeEEecCCceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEcCCCCCCCCCccEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEEeecCCCceeEEEeccCCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhc
Q psy2902 549 DANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEV 628 (945)
Q Consensus 549 d~~g~l~v~a~~~~~g~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~ 628 (945)
|.||+|+|++.+..+|++..+.+....+||++|+++++++++++..+|+..+++.+++|.+|++++.+++.+. +..+.
T Consensus 474 d~~Gil~v~a~d~~t~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~--~~~~~ 551 (653)
T PRK13411 474 DVNGILKVSAQDQGTGREQSIRITNTGGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTLK--ENGEL 551 (653)
T ss_pred CCCCeEEEEEeeccCCceEeeEEeccccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--Hhhcc
Confidence 9999999999999999999888887778999999999999999999999999999999999999999999986 35688
Q ss_pred cChhHHHHHHHHhccc
Q psy2902 629 LSDSEKRIIYDQYGHA 644 (945)
Q Consensus 629 l~~~~k~~~~d~~~~~ 644 (945)
++++++.++.+.+.+.
T Consensus 552 ~~~~er~~i~~~l~~~ 567 (653)
T PRK13411 552 ISEELKQRAEQKVEQL 567 (653)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 8999998888877653
No 7
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=5.4e-87 Score=792.88 Aligned_cols=565 Identities=55% Similarity=0.867 Sum_probs=528.4
Q ss_pred CCceEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcH
Q psy2902 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEK 149 (945)
Q Consensus 70 m~~viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~ 149 (945)
|+.+||||||||||+||++.+|.+.++.|..|++.+||+|+|..++++++|..|..+...+|.++++++|||||+++++
T Consensus 38 ~~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d- 116 (673)
T PLN03184 38 AEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE- 116 (673)
T ss_pred CCCEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch-
Confidence 4458999999999999999999999999999999999999998777899999999999999999999999999999875
Q ss_pred HHHhhhcCCCeeEEecCCCceEEEE--CCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHH
Q psy2902 150 EVQKDISLMPYKIVKADNGDAWISV--RGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAG 227 (945)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa 227 (945)
++.....+||.++...++.+.+.+ .+..++|+++++++|++|++.|+.+++..+.++|||||++|++.||+++++||
T Consensus 117 -~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 195 (673)
T PLN03184 117 -VDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAG 195 (673)
T ss_pred -hhhhhhcCCeEEEecCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 456677899999988888877665 47889999999999999999999999999999999999999999999999999
Q ss_pred HHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHH
Q psy2902 228 RIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRII 307 (945)
Q Consensus 228 ~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~ 307 (945)
+.|||+++++++||+|||++|+... ..+..+||||+||||+|+|++++ .++.++++++.++.++||.+||..|+
T Consensus 196 ~~AGl~v~~li~EPtAAAlayg~~~--~~~~~vlV~DlGgGT~DvSi~~~----~~~~~eVla~~gd~~LGG~dfD~~L~ 269 (673)
T PLN03184 196 RIAGLEVLRIINEPTAASLAYGFEK--KSNETILVFDLGGGTFDVSVLEV----GDGVFEVLSTSGDTHLGGDDFDKRIV 269 (673)
T ss_pred HHCCCCeEEEeCcHHHHHHHhhccc--CCCCEEEEEECCCCeEEEEEEEe----cCCEEEEEEecCCCccCHHHHHHHHH
Confidence 9999999999999999999998876 35678999999999999999998 67899999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHH
Q psy2902 308 DYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTI 387 (945)
Q Consensus 308 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~ 387 (945)
+|+.++|...++.++..+++++.+|+.+||++|+.||.+..+.+.++.+.....+..++++.|||++|++++.++++++.
T Consensus 270 ~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~ 349 (673)
T PLN03184 270 DWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCK 349 (673)
T ss_pred HHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHH
Confidence 99999999888888888999999999999999999999999999888765444344578999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhccCCCCceEEEeeccc
Q psy2902 388 EPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPL 467 (945)
Q Consensus 388 ~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~~~~~~~~~~~~~~~ 467 (945)
.+|.++|+.+++...+|+.|+||||+|++|.|+++|+++||..+....||++|||+|||++|+++++..+++.+.|++|+
T Consensus 350 ~~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~~~~~~~~dv~p~ 429 (673)
T PLN03184 350 TPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGVLAGEVSDIVLLDVTPL 429 (673)
T ss_pred HHHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHHHHHHHHHHHHhccCccceEEEecccc
Confidence 99999999999999999999999999999999999999999888888999999999999999999998889999999999
Q ss_pred eeeEEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCCCCCCCCcCeEEEEEE
Q psy2902 468 SLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFD 547 (945)
Q Consensus 468 s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~~~~~~~~~~i~v~~~ 547 (945)
+|||++.++.+.+||++|++||++++++|++..|+|+.+.|.||+|++....+|..||++.|.++|+.+.|.++|+|+|+
T Consensus 430 slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~ 509 (673)
T PLN03184 430 SLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFD 509 (673)
T ss_pred cceEEecCCeeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccCceEEEEEEeCCCCCCCCCceEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCccEEEEEeecCCCceeEEEeccCCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhh
Q psy2902 548 IDANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYE 627 (945)
Q Consensus 548 ~d~~g~l~v~a~~~~~g~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~ 627 (945)
+|.||+|+|++.+..++++..+++....+||++++++++++++++..+|+..+++.+++|.+|++++.+++++. ++.+
T Consensus 510 id~~GiL~V~a~~~~t~~~~~~~i~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakN~lE~~iy~~r~~l~--e~~~ 587 (673)
T PLN03184 510 IDANGILSVSATDKGTGKKQDITITGASTLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLK--ELGD 587 (673)
T ss_pred eCCCCeEEEEEEecCCCeEEEEEecccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHH--HHhh
Confidence 99999999999999999999999987778999999999999999999999999999999999999999999985 5677
Q ss_pred ccChhHHHHHHHHhccc
Q psy2902 628 VLSDSEKRIIYDQYGHA 644 (945)
Q Consensus 628 ~l~~~~k~~~~d~~~~~ 644 (945)
.++++++.++.+.+.+.
T Consensus 588 ~~~~eer~~l~~~l~~~ 604 (673)
T PLN03184 588 KVPADVKEKVEAKLKEL 604 (673)
T ss_pred hCCHHHHHHHHHHHHHH
Confidence 88999988887776643
No 8
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1.1e-86 Score=792.57 Aligned_cols=565 Identities=71% Similarity=1.074 Sum_probs=533.3
Q ss_pred CCceEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcH
Q psy2902 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEK 149 (945)
Q Consensus 70 m~~viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~ 149 (945)
|+.+||||||||||+||++++|.++++.|..|++.+||+|+|..++++++|..|..+...+|.++++++||+||++ ++
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~ 78 (627)
T PRK00290 1 MGKIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--DE 78 (627)
T ss_pred CCcEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--ch
Confidence 5568999999999999999999999999999999999999998667899999999999999999999999999998 66
Q ss_pred HHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHHH
Q psy2902 150 EVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRI 229 (945)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~ 229 (945)
.++...+.+||.++...++...+.+++..++|+++++++|++|++.|+.+++..+.++|||||++|++.||+++++||+.
T Consensus 79 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa~~ 158 (627)
T PRK00290 79 EVQKDIKLVPYKIVKADNGDAWVEIDGKKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKI 158 (627)
T ss_pred HHHHHhhcCCeEEEEcCCCceEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHH
Confidence 78888889999999988888888999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHH
Q psy2902 230 AGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309 (945)
Q Consensus 230 AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~ 309 (945)
|||+++++++||+|||++|+... ..+.++||||+||||+|+|++++ .++.++++++.++..+||.+||.+|++|
T Consensus 159 AGl~v~~li~EptAAAl~y~~~~--~~~~~vlV~D~GggT~dvsv~~~----~~~~~~vla~~gd~~lGG~d~D~~l~~~ 232 (627)
T PRK00290 159 AGLEVLRIINEPTAAALAYGLDK--KGDEKILVYDLGGGTFDVSILEI----GDGVFEVLSTNGDTHLGGDDFDQRIIDY 232 (627)
T ss_pred cCCceEEEecchHHHHHHhhhcc--CCCCEEEEEECCCCeEEEEEEEE----eCCeEEEEEecCCCCcChHHHHHHHHHH
Confidence 99999999999999999998876 35789999999999999999999 6789999999999999999999999999
Q ss_pred HHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHH
Q psy2902 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEP 389 (945)
Q Consensus 310 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~ 389 (945)
+.++|..+++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+..+..++.++.+.|||++|+++++++++++..+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~~~~ 312 (627)
T PRK00290 233 LADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVERTIEP 312 (627)
T ss_pred HHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHHHHHH
Confidence 99999998888888899999999999999999999999999988877654334468899999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhccCCCCceEEEeecccee
Q psy2902 390 CRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSL 469 (945)
Q Consensus 390 i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~~~~~~~~~~~~~~~s~ 469 (945)
+.++|+.+++...+|+.|+||||+|++|+|++.|++.||.++....||++|||+|||++|+.+++..+++.+.|++|++|
T Consensus 313 i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~GAa~~aa~l~~~~~~~~~~d~~~~sl 392 (627)
T PRK00290 313 CKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAIQGGVLAGDVKDVLLLDVTPLSL 392 (627)
T ss_pred HHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHHhHHHHHHHhcCCccceeeeeccceEE
Confidence 99999999999999999999999999999999999999998888999999999999999999999888999999999999
Q ss_pred eEEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCCCCCCCCcCeEEEEEEEC
Q psy2902 470 GIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549 (945)
Q Consensus 470 gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~~~~~~~~~~i~v~~~~d 549 (945)
||++.++.+.+||++|+++|++++.+|++..|+|+.+.|.||+|++....+|..||++.|.++|+.+.|.++|+|+|++|
T Consensus 393 gi~~~~~~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d 472 (627)
T PRK00290 393 GIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDID 472 (627)
T ss_pred EEEecCCeEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEecccccCcCceEEEEEECCCCCCCCCCceEEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred CCccEEEEEeecCCCceeEEEeccCCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhcc
Q psy2902 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVL 629 (945)
Q Consensus 550 ~~g~l~v~a~~~~~g~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l 629 (945)
.||+|+|++.+..+|+..++++.....+|+++++++++++.++..+|+..+++.+++|.+|++++.+++.++ ++.+.+
T Consensus 473 ~~gil~v~a~~~~~~~~~~~~i~~~~~ls~e~i~~~~~~~~~~~~~d~~~~~~~eakN~le~~i~~~~~~l~--~~~~~~ 550 (627)
T PRK00290 473 ANGIVHVSAKDKGTGKEQSITITASSGLSDEEIERMVKDAEANAEEDKKRKELVEARNQADSLIYQTEKTLK--ELGDKV 550 (627)
T ss_pred CCceEEEEEEEccCCceeEEEeccccccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH--HHhccC
Confidence 999999999999999999999987778999999999999999999999999999999999999999999986 466788
Q ss_pred ChhHHHHHHHHhccc
Q psy2902 630 SDSEKRIIYDQYGHA 644 (945)
Q Consensus 630 ~~~~k~~~~d~~~~~ 644 (945)
+++++.++.+.+.+.
T Consensus 551 ~~~e~~~i~~~l~~~ 565 (627)
T PRK00290 551 PADEKEKIEAAIKEL 565 (627)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999988887654
No 9
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=5.1e-85 Score=777.30 Aligned_cols=563 Identities=52% Similarity=0.834 Sum_probs=520.9
Q ss_pred ceEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcHHH
Q psy2902 72 KIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEKEV 151 (945)
Q Consensus 72 ~viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~~~ 151 (945)
.+||||||||||+||++.++.++++.|..|++.+||+|+|.++ .+++|..|..+...+|.++++++||+||++++++.+
T Consensus 5 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~-~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~ 83 (653)
T PTZ00009 5 PAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDSVV 83 (653)
T ss_pred cEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEECCC-CEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCchhH
Confidence 3799999999999999999999999999999999999999754 689999999999999999999999999999999999
Q ss_pred HhhhcCCCeeEEecCCCceEEEE--CC--eeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHH
Q psy2902 152 QKDISLMPYKIVKADNGDAWISV--RG--KKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAG 227 (945)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa 227 (945)
+...+.+||.++...++...+.+ .+ ..++|+++++++|++|++.|+.+++..+.++|||||++|++.||+++++||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa 163 (653)
T PTZ00009 84 QSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAG 163 (653)
T ss_pred hhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHHHH
Confidence 99999999999887777666554 33 689999999999999999999999999999999999999999999999999
Q ss_pred HHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHH
Q psy2902 228 RIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRII 307 (945)
Q Consensus 228 ~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~ 307 (945)
+.|||+++++++||+|||++|+.......+.++||||+||||+|+|++++ ..+.++++++.++..+||.+||.+|+
T Consensus 164 ~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~----~~~~~~v~a~~gd~~lGG~d~D~~l~ 239 (653)
T PTZ00009 164 TIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTI----EDGIFEVKATAGDTHLGGEDFDNRLV 239 (653)
T ss_pred HHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEE----eCCeEEEEEecCCCCCChHHHHHHHH
Confidence 99999999999999999999988764345788999999999999999999 67889999999999999999999999
Q ss_pred HHHHHHHHHHh-CCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHH
Q psy2902 308 DYILDEFNKIN-GIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRT 386 (945)
Q Consensus 308 ~~l~~~~~~~~-~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i 386 (945)
+|+.++|..++ +.++..+++++.+|+.+||++|+.||.+..+.+.++.+..+. ++++.|||++|++++.++++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~----d~~~~itR~~fe~l~~~l~~~~ 315 (653)
T PTZ00009 240 EFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGI----DYNVTISRARFEELCGDYFRNT 315 (653)
T ss_pred HHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCCc----eEEEEECHHHHHHHHHHHHHHH
Confidence 99999998776 467778899999999999999999999999999888765543 7899999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhC-CCCCCCCCCCchhhhhHHHhhhhccCC----CCceEE
Q psy2902 387 IEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFG-KDPRRDINPDEAVAVGAAIQGSVLSGD----RKDLLL 461 (945)
Q Consensus 387 ~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg-~~~~~~~~p~~avA~GAa~~a~~~~~~----~~~~~~ 461 (945)
...+.++|+.++++..+|+.|+||||+||+|+|+++|+++|+ ..+....||++|||+|||++|+++++. .+++.+
T Consensus 316 ~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~ 395 (653)
T PTZ00009 316 LQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLL 395 (653)
T ss_pred HHHHHHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceEE
Confidence 999999999999999999999999999999999999999996 567788999999999999999999873 567889
Q ss_pred EeeccceeeEEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCCCCCCCCcCe
Q psy2902 462 LDVTPLSLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQ 541 (945)
Q Consensus 462 ~~~~~~s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~~~~~~~~~~ 541 (945)
.|++|++||++..++.+.+||++|++||++++.+|++..|+|+.+.|.||+|++....+|..||++.|.++|+.+.+.++
T Consensus 396 ~dv~p~slgi~~~~~~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~ 475 (653)
T PTZ00009 396 LDVTPLSLGLETAGGVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQ 475 (653)
T ss_pred EeecccccCccccCCceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEecccccCCCCceEEEEEEcCCCCCCCCCce
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999889
Q ss_pred EEEEEEECCCccEEEEEeecCCCceeEEEeccC-CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchh
Q psy2902 542 IEVTFDIDANGILHVTAKDKKTGKENKITIKAN-SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSL 620 (945)
Q Consensus 542 i~v~~~~d~~g~l~v~a~~~~~g~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~ 620 (945)
|+|+|++|.||+|+|++.+..+|+...+++... ..+|+++++++++.+.++..+|+..+++.+++|.+|+++|++++.+
T Consensus 476 i~v~f~id~~Gil~v~~~~~~t~~~~~~~i~~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~eakN~lEs~Iy~~r~~L 555 (653)
T PTZ00009 476 IEVTFDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTL 555 (653)
T ss_pred EEEEEEECCCCeEEEEEecccCCceeeEEEeeccccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999999999999999999988888744 5699999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccChhHHHHHHHHhcc
Q psy2902 621 KIKEAYEVLSDSEKRIIYDQYGH 643 (945)
Q Consensus 621 ~~~~~~~~l~~~~k~~~~d~~~~ 643 (945)
+..++.+.++++++.++.+.+.+
T Consensus 556 ~~~~~~~~~t~ee~~~l~~~l~~ 578 (653)
T PTZ00009 556 QDEKVKGKLSDSDKATIEKAIDE 578 (653)
T ss_pred hhhhhhccCCHHHHHHHHHHHHH
Confidence 75557788898888877666553
No 10
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=3.5e-85 Score=778.17 Aligned_cols=562 Identities=66% Similarity=1.001 Sum_probs=527.9
Q ss_pred eEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcHHHH
Q psy2902 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEKEVQ 152 (945)
Q Consensus 73 viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~~~~ 152 (945)
+||||||||||++|++.+|.+.++.|..|++.+||+|+|..++++++|..|..+...+|.++++++||+||+++ ++++
T Consensus 2 viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~--~~~~ 79 (595)
T TIGR02350 2 IIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRF--DEVT 79 (595)
T ss_pred EEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCc--hHHH
Confidence 79999999999999999999999999999999999999987778999999999999999999999999999988 3466
Q ss_pred hhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCC
Q psy2902 153 KDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGL 232 (945)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl 232 (945)
...+.+||. +..+++...+.+++..++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++||+.|||
T Consensus 80 ~~~~~~~~~-v~~~~~~~~~~v~~~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl 158 (595)
T TIGR02350 80 EEAKRVPYK-VVGDGGDVRVKVDGKEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGL 158 (595)
T ss_pred HHhhcCCee-EEcCCCceEEEECCEEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 777889999 6667788889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHH
Q psy2902 233 EVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILD 312 (945)
Q Consensus 233 ~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~ 312 (945)
+++++++||+|||++|+.... ..+.++||||+||||+|+|++++ .++.++++++.++..+||.+||..|++|+.+
T Consensus 159 ~v~~li~EptAAAl~y~~~~~-~~~~~vlV~D~Gggt~dvsv~~~----~~~~~~v~~~~gd~~lGG~d~D~~l~~~~~~ 233 (595)
T TIGR02350 159 EVLRIINEPTAAALAYGLDKS-KKDEKILVFDLGGGTFDVSILEI----GDGVFEVLSTAGDTHLGGDDFDQRIIDWLAD 233 (595)
T ss_pred ceEEEecchHHHHHHHhhccc-CCCcEEEEEECCCCeEEEEEEEe----cCCeEEEEEecCCcccCchhHHHHHHHHHHH
Confidence 999999999999999987653 45788999999999999999999 6789999999999999999999999999999
Q ss_pred HHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHHHHH
Q psy2902 313 EFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEPCRI 392 (945)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~ 392 (945)
+|.+.++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+..+..+..++++.|||++|+++++++++++.+++.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~i~~ 313 (595)
T TIGR02350 234 EFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEPVRQ 313 (595)
T ss_pred HHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888889999999999999999999999999988877654434457899999999999999999999999999
Q ss_pred HHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhccCCCCceEEEeeccceeeEE
Q psy2902 393 AIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIE 472 (945)
Q Consensus 393 ~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~~~~~~~~~~~~~~~s~gi~ 472 (945)
+|+.+++...+|+.|+||||+|++|+|++.|++.||.++....||++|||+|||++|+.+++..+++.+.|++|++||++
T Consensus 314 ~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~~aa~l~~~~~~~~~~d~~~~~igi~ 393 (595)
T TIGR02350 314 ALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQGGVLKGDVKDVLLLDVTPLSLGIE 393 (595)
T ss_pred HHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHHHHHHhcCCcccceeeecccceeEEE
Confidence 99999999999999999999999999999999999988888999999999999999999999888999999999999999
Q ss_pred EeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCCCCCCCCcCeEEEEEEECCCc
Q psy2902 473 TMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDIDANG 552 (945)
Q Consensus 473 ~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~~~~~~~~~~i~v~~~~d~~g 552 (945)
+.++.+.+||++|++||++++.+|++..|+|+.+.|.||+|++....+|..||++.|.++++.+.+.++|+|+|++|.||
T Consensus 394 ~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~G 473 (595)
T TIGR02350 394 TLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANG 473 (595)
T ss_pred ecCCceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEeecccccccCcEeEEEEECCCCCCCCCCceEEEEEEEcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred cEEEEEeecCCCceeEEEeccCCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChh
Q psy2902 553 ILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDS 632 (945)
Q Consensus 553 ~l~v~a~~~~~g~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~ 632 (945)
+|+|++.+..+|++..+++....++|+++++++++++.++..+|+..+++.+++|.+|+++|.++++++ +..+.++++
T Consensus 474 ~l~v~~~~~~~~~~~~~~i~~~~~ls~~~~~~~~~~~~~~~~~D~~~~~~~e~kn~lEs~iy~~r~~l~--~~~~~~~~~ 551 (595)
T TIGR02350 474 ILHVSAKDKGTGKEQSITITASSGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLK--EAGDKLPAE 551 (595)
T ss_pred eEEEEEEEccCCceEEEEeccccccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH--HhhccCCHH
Confidence 999999999999999999988788999999999999999999999999999999999999999999996 356788999
Q ss_pred HHHHHHHHhccc
Q psy2902 633 EKRIIYDQYGHA 644 (945)
Q Consensus 633 ~k~~~~d~~~~~ 644 (945)
+++++.+.+.+.
T Consensus 552 e~~~l~~~l~~~ 563 (595)
T TIGR02350 552 EKEKIEKAVAEL 563 (595)
T ss_pred HHHHHHHHHHHH
Confidence 999988877653
No 11
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=4.6e-85 Score=775.72 Aligned_cols=565 Identities=58% Similarity=0.900 Sum_probs=527.4
Q ss_pred CCceEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcH
Q psy2902 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEK 149 (945)
Q Consensus 70 m~~viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~ 149 (945)
|+++||||||||||++|++.+|.+.++.|..|.+.+||+|+|.+++++++|..|..+...+|.++++++||+||+.+++
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~- 79 (621)
T CHL00094 1 MGKVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE- 79 (621)
T ss_pred CCceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH-
Confidence 5568999999999999999999999999999999999999998777899999999999999999999999999998764
Q ss_pred HHHhhhcCCCeeEEecCCCceEEEE--CCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHH
Q psy2902 150 EVQKDISLMPYKIVKADNGDAWISV--RGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAG 227 (945)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa 227 (945)
+......+||.++...++.+.+.+ .+..++|+++++++|++|++.|+.+++..+.++|||||++|++.||+++++||
T Consensus 80 -~~~~~~~~~~~v~~~~~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa 158 (621)
T CHL00094 80 -ISEEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAG 158 (621)
T ss_pred -HHhhhhcCCeEEEECCCCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 555667799999987777777655 56789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHH
Q psy2902 228 RIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRII 307 (945)
Q Consensus 228 ~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~ 307 (945)
+.|||+++++++||+|||++|+... ..+..+||||+||||+|+|++++ .++.++++++.++..+||.+||..|+
T Consensus 159 ~~AGl~v~~li~EptAAAlay~~~~--~~~~~vlV~DlGgGT~DvSv~~~----~~~~~~vla~~gd~~lGG~d~D~~l~ 232 (621)
T CHL00094 159 KIAGLEVLRIINEPTAASLAYGLDK--KNNETILVFDLGGGTFDVSILEV----GDGVFEVLSTSGDTHLGGDDFDKKIV 232 (621)
T ss_pred HHcCCceEEEeccHHHHHHHhcccc--CCCCEEEEEEcCCCeEEEEEEEE----cCCEEEEEEEecCCCcChHHHHHHHH
Confidence 9999999999999999999998875 35678999999999999999998 67889999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHH
Q psy2902 308 DYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTI 387 (945)
Q Consensus 308 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~ 387 (945)
+|+.++|.++++.++..+++.+.+|+.+||++|+.||....+.+.++.+..+..++.++...|||++|++++.++++++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~ 312 (621)
T CHL00094 233 NWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCR 312 (621)
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHH
Confidence 99999999988888888899999999999999999999998889888765443344578899999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhccCCCCceEEEeeccc
Q psy2902 388 EPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPL 467 (945)
Q Consensus 388 ~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~~~~~~~~~~~~~~~ 467 (945)
.+++++|+++++...+|+.|+||||+|++|.|+++|+++||.++....||++|||+|||++|+++++..+++.+.|++|+
T Consensus 313 ~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa~ls~~~~~~~~~d~~~~ 392 (621)
T CHL00094 313 IPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVLAGEVKDILLLDVTPL 392 (621)
T ss_pred HHHHHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHHHhcCCccceeeeeeece
Confidence 99999999999999999999999999999999999999999888889999999999999999999998889999999999
Q ss_pred eeeEEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCCCCCCCCcCeEEEEEE
Q psy2902 468 SLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFD 547 (945)
Q Consensus 468 s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~~~~~~~~~~i~v~~~ 547 (945)
+||+++.++.+.+|||+|++||++++.+|++..|+|+.+.|.||+|++....+|..||++.|.++|+.+.|.++|+|+|+
T Consensus 393 ~lgi~~~~~~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~~~~~~~g~~~i~v~f~ 472 (621)
T CHL00094 393 SLGVETLGGVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFD 472 (621)
T ss_pred eeeeeccCCEEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEeeccccCCCCCEEEEEEEeCCCCCCCCCCcEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCccEEEEEeecCCCceeEEEeccCCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhh
Q psy2902 548 IDANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYE 627 (945)
Q Consensus 548 ~d~~g~l~v~a~~~~~g~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~ 627 (945)
+|.||+|+|++.+..+|+...+++....+||+++++++++++.++..+|+..+++.+++|.+|++++.+++++. ++.+
T Consensus 473 id~~Gil~v~~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~le~~i~~~~~~l~--~~~~ 550 (621)
T CHL00094 473 IDANGILSVTAKDKGTGKEQSITIQGASTLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQLK--ELKD 550 (621)
T ss_pred ECCCCeEEEEEeeccCCceeeeeeccchhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHhHHHHHHHHHHHH--HHhc
Confidence 99999999999999999999998887778999999999999999999999999999999999999999999986 3667
Q ss_pred ccChhHHHHHHHHhccc
Q psy2902 628 VLSDSEKRIIYDQYGHA 644 (945)
Q Consensus 628 ~l~~~~k~~~~d~~~~~ 644 (945)
.++++++.++.+.+.+.
T Consensus 551 ~~~~~~~~~~~~~l~~~ 567 (621)
T CHL00094 551 KISEEKKEKIENLIKKL 567 (621)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 88999999988877653
No 12
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=3.8e-84 Score=762.45 Aligned_cols=551 Identities=44% Similarity=0.735 Sum_probs=509.9
Q ss_pred eEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcHHHH
Q psy2902 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEKEVQ 152 (945)
Q Consensus 73 viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~~~~ 152 (945)
+||||||||||+||++.+|.++++.|..|.+.+||+|+|..++.+++|..|..+...+|.++++++||++|+++.+...
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~~- 79 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIKT- 79 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchhh-
Confidence 4899999999999999999999999999999999999998777899999999999999999999999999998876432
Q ss_pred hhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCC
Q psy2902 153 KDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGL 232 (945)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl 232 (945)
...+||.++...++.+.+.+.+..++|+++++++|++|++.|+.+++..+.++|||||++|++.||+++++||+.|||
T Consensus 80 --~~~~~~~~~~~~~~~~~~~~~~~~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl 157 (599)
T TIGR01991 80 --FSILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGL 157 (599)
T ss_pred --cccCCEEEEEcCCCceEEEeCCCEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 567899998888888888887778999999999999999999999999999999999999999999999999999999
Q ss_pred ccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHH
Q psy2902 233 EVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILD 312 (945)
Q Consensus 233 ~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~ 312 (945)
+++++++||+|||++|+... ..+.++||||+||||+|+|++++ .++.++++++.++..+||.+||..|++|+.+
T Consensus 158 ~v~~li~EPtAAAlay~~~~--~~~~~vlV~DlGgGT~DvSi~~~----~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~ 231 (599)
T TIGR01991 158 NVLRLLNEPTAAAVAYGLDK--ASEGIYAVYDLGGGTFDVSILKL----TKGVFEVLATGGDSALGGDDFDHALAKWILK 231 (599)
T ss_pred CceEEecCHHHHHHHHhhcc--CCCCEEEEEEcCCCeEEEEEEEE----cCCeEEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999998876 35788999999999999999999 6788999999999999999999999999997
Q ss_pred HHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHHHHH
Q psy2902 313 EFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEPCRI 392 (945)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~ 392 (945)
++ +.+...++..+.+|+.+||++|+.||....+.+.++. . ..++.++|||++|+++++++++++..++.+
T Consensus 232 ~~----~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~----g~~~~~~itr~efe~l~~~ll~~i~~~i~~ 301 (599)
T TIGR01991 232 QL----GISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--D----GKDFKGKLTRDEFEALIQPLVQKTLSICRR 301 (599)
T ss_pred hh----CCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--C----CcEEEEEEeHHHHHHHHHHHHHHHHHHHHH
Confidence 65 3444567889999999999999999999888887764 2 248899999999999999999999999999
Q ss_pred HHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhccCC--CCceEEEeeccceee
Q psy2902 393 AIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSGD--RKDLLLLDVTPLSLG 470 (945)
Q Consensus 393 ~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~~~--~~~~~~~~~~~~s~g 470 (945)
+|+.+++...+|+.|+||||+|++|+|+++|++.|+..+....||++|||.|||++|+.+++. ..++.+.|++|++||
T Consensus 302 ~L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f~~~~~~~~npdeaVA~GAai~a~~l~~~~~~~~~~l~dv~p~slg 381 (599)
T TIGR01991 302 ALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQADLLAGNRIGNDLLLLDVTPLSLG 381 (599)
T ss_pred HHHHcCCChhhCCEEEEECCcCCChHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHHHhccccccCceEEEEeeeeeeE
Confidence 999999999999999999999999999999999999888889999999999999999999874 357899999999999
Q ss_pred EEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCCCCCCCCcCeEEEEEEECC
Q psy2902 471 IETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDIDA 550 (945)
Q Consensus 471 i~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~~~~~~~~~~i~v~~~~d~ 550 (945)
|++.++.+.+||++|++||++++..|++..|+|+.+.|.||||++..+.+|..||++.|.++|+.+.|.++|+|+|++|.
T Consensus 382 i~~~~g~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~ 461 (599)
T TIGR01991 382 IETMGGLVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDA 461 (599)
T ss_pred EEecCCEEEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCCCCCCCcEEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEEeecCCCceeEEEeccCCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccC
Q psy2902 551 NGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLS 630 (945)
Q Consensus 551 ~g~l~v~a~~~~~g~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~ 630 (945)
||+|+|+|.+..+|++..+.+....++|+++|+++.+++.++..+|+..+++.+.+|.++.+++.+++.+. +..+.++
T Consensus 462 ~gil~V~a~~~~t~~~~~~~i~~~~~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 539 (599)
T TIGR01991 462 DGLLTVSAQEQSTGVEQSIQVKPSYGLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAERILEALQAALA--ADGDLLS 539 (599)
T ss_pred CCeEEEEEEECCCCcEEEEecccccCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HhhccCC
Confidence 99999999999999999999887788999999999999999999999999999999999999998877764 2335788
Q ss_pred hhHHHHHHHHhccc
Q psy2902 631 DSEKRIIYDQYGHA 644 (945)
Q Consensus 631 ~~~k~~~~d~~~~~ 644 (945)
.+++.++.+.+.+.
T Consensus 540 ~~~~~~~~~~l~~~ 553 (599)
T TIGR01991 540 EDERAAIDAAMEAL 553 (599)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887776543
No 13
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=2.9e-84 Score=764.63 Aligned_cols=562 Identities=44% Similarity=0.730 Sum_probs=513.0
Q ss_pred ccccchhhcccccccCCceEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCch
Q psy2902 55 ILDEDLKRILHARRIMSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNT 134 (945)
Q Consensus 55 ~~~~~~~~~~~~~~~m~~viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~ 134 (945)
+.+|.++..+..+.. +||||||||||+||++.+|.++++.+..|++.+||+|+|+++ .+++|..|..+...+|.++
T Consensus 6 ~~~~~~~~~~~~~~~---~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~-~~~vG~~A~~~~~~~p~~t 81 (616)
T PRK05183 6 ISEPGQSAAPHQRRL---AVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLED-GIEVGYEARANAAQDPKNT 81 (616)
T ss_pred ecCCCCCCCcccCCe---EEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCC-CEEEcHHHHHhhHhCchhh
Confidence 345555555666655 899999999999999999999999999999999999999876 4899999999999999999
Q ss_pred hHHHHHhhCCCCCcHHHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCC
Q psy2902 135 IYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAY 214 (945)
Q Consensus 135 i~~~k~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~ 214 (945)
++++||++|+++++ ++.....+||.+....++.+.+.+.+..++|+++++++|++|++.|+.+++..+.++|||||++
T Consensus 82 i~~~KrliG~~~~d--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~ 159 (616)
T PRK05183 82 ISSVKRFMGRSLAD--IQQRYPHLPYQFVASENGMPLIRTAQGLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAY 159 (616)
T ss_pred HHHHHHHhCCCchh--hhhhhhcCCeEEEecCCCceEEEecCCeEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCC
Confidence 99999999998875 3445567899988877888888887778999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCC
Q psy2902 215 FNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGD 294 (945)
Q Consensus 215 ~~~~qr~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~ 294 (945)
|++.||+++++||+.|||+++++++||+|||++|+... ..+.++||||+||||+|+|++++ ..+.++++++.++
T Consensus 160 f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~--~~~~~vlV~DlGGGT~DvSv~~~----~~~~~evlat~gd 233 (616)
T PRK05183 160 FDDAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGLDS--GQEGVIAVYDLGGGTFDISILRL----SKGVFEVLATGGD 233 (616)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhhccc--CCCCEEEEEECCCCeEEEEEEEe----eCCEEEEEEecCC
Confidence 99999999999999999999999999999999998865 34788999999999999999998 6678999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHH
Q psy2902 295 TFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAK 374 (945)
Q Consensus 295 ~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~ 374 (945)
.++||.+||..|++|+.+++. .+...++..+.+|+.+||++|+.||....+.+.++.+ ...|||++
T Consensus 234 ~~lGG~d~D~~l~~~~~~~~~----~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~----------~~~itr~e 299 (616)
T PRK05183 234 SALGGDDFDHLLADWILEQAG----LSPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALW----------QGEITREQ 299 (616)
T ss_pred CCcCHHHHHHHHHHHHHHHcC----CCcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecC----------CCeEcHHH
Confidence 999999999999999998775 3334678889999999999999999998888776421 22499999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhccC
Q psy2902 375 LELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSG 454 (945)
Q Consensus 375 ~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~~ 454 (945)
|++++.++++++..++.++|+++++...+|+.|+||||+|++|+|+++|+++||..+....||++|||+|||++|+.+++
T Consensus 300 fe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAAi~a~~l~~ 379 (616)
T PRK05183 300 FNALIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAIQADILAG 379 (616)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999988888899999999999999999987
Q ss_pred C--CCceEEEeeccceeeEEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCC
Q psy2902 455 D--RKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGI 532 (945)
Q Consensus 455 ~--~~~~~~~~~~~~s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~ 532 (945)
. ..++.+.|++|++|||++.+|.+.+||++|++||+++++.|++..|+|+.+.|.||||++..+.+|..||++.|.++
T Consensus 380 ~~~~~~~~l~dv~p~slgi~~~~g~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i 459 (616)
T PRK05183 380 NKPDSDMLLLDVIPLSLGLETMGGLVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGI 459 (616)
T ss_pred ccccCceEEEeeccccccceecCCeEEEEEeCCCcccccccEEEEeccCCCeEEEEEEecccccccccccEEEEEEeCCC
Confidence 4 45899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCeEEEEEEECCCccEEEEEeecCCCceeEEEeccCCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcce
Q psy2902 533 PPALRGIPQIEVTFDIDANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESL 612 (945)
Q Consensus 533 ~~~~~~~~~i~v~~~~d~~g~l~v~a~~~~~g~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~ 612 (945)
|+.+.|.++|+|+|++|.||+|+|+|.+..+|+...+.++.+.++|+++|+++++++.++..+|+..+++.+.+|.++.+
T Consensus 460 ~~~~~g~~~i~v~f~~d~~Gil~V~a~~~~~~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 539 (616)
T PRK05183 460 PPMAAGAARIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDDEIARMLKDSMSHAEEDMQARALAEQKVEAERV 539 (616)
T ss_pred CCCCCCCccEEEEEEECCCCeEEEEEEEcCCCcEEEecccccccCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987778999999999999999999999999999999999999
Q ss_pred eeeccchhhhhhhhhccChhHHHHHHHHhccc
Q psy2902 613 IHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHA 644 (945)
Q Consensus 613 ~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~ 644 (945)
++.+++.+. +..+.++.+++.++.+.+.+.
T Consensus 540 i~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~ 569 (616)
T PRK05183 540 LEALQAALA--ADGDLLSAAERAAIDAAMAAL 569 (616)
T ss_pred HHHHHHHHH--HhhccCCHHHHHHHHHHHHHH
Confidence 998888875 233578888888888776653
No 14
>KOG0101|consensus
Probab=100.00 E-value=2.3e-83 Score=715.02 Aligned_cols=562 Identities=51% Similarity=0.811 Sum_probs=531.7
Q ss_pred ceEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcHHH
Q psy2902 72 KIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEKEV 151 (945)
Q Consensus 72 ~viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~~~ 151 (945)
.+||||||||+++++++.++..+++.|.+|++.+||+++|.++ +.++|..|..+...+|.++++++|+++|+.++++.+
T Consensus 8 ~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~~-e~~vg~~a~~qv~~np~ntv~~~krliGr~f~d~~v 86 (620)
T KOG0101|consen 8 VAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDT-ERLIGDAAKNQVARNPDNTVFDAKRLIGRFFDDPEV 86 (620)
T ss_pred ceeeEeccCccceeeeEcCCcceeeeccccCccccceeeeccc-ccchhhhhhhhhhcCCcceeeehhhhcCccccchhh
Confidence 4799999999999999999999999999999999999999876 789999999999999999999999999999999999
Q ss_pred HhhhcCCCeeEEecCCCceEEEEC--C--eeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHH
Q psy2902 152 QKDISLMPYKIVKADNGDAWISVR--G--KKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAG 227 (945)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa 227 (945)
+.+++.|||++....++.+.+.+. + +.++|+++.++.|..+++.|+.+++..+.++|+|||++|++.||+++.+|+
T Consensus 87 ~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at~~A~ 166 (620)
T KOG0101|consen 87 QSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAATKDAA 166 (620)
T ss_pred HhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHHHHHHH
Confidence 999999999999666666666653 2 578999999999999999999999999999999999999999999999999
Q ss_pred HHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHH
Q psy2902 228 RIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRII 307 (945)
Q Consensus 228 ~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~ 307 (945)
.+|||+++++++||+|||++|+.........+|+|+|+||||+|++++.+ .++.+.+.++.++.++||.+||+.|+
T Consensus 167 ~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i----~gG~~~vkat~gd~~lGGedf~~~l~ 242 (620)
T KOG0101|consen 167 LIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSL----EGGIFEVKATAGDTHLGGEDFDNKLV 242 (620)
T ss_pred HhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEe----ccchhhhhhhcccccccchhhhHHHH
Confidence 99999999999999999999998877677889999999999999999999 66788999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHH
Q psy2902 308 DYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTI 387 (945)
Q Consensus 308 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~ 387 (945)
+|+..+|.++++.++..+.+++.+|+.+||.+|+.||+...+.+.++.+.++. ++...++|++|+.++.+++..+.
T Consensus 243 ~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~----d~~~~itrarfe~l~~dlf~~~~ 318 (620)
T KOG0101|consen 243 NHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGI----DFYTSITRARFEELNADLFRSTL 318 (620)
T ss_pred HHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccc----cccceeehhhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999998887765 78899999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHh-CCCCCCCCCCCchhhhhHHHhhhhccC----CCCceEEE
Q psy2902 388 EPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFF-GKDPRRDINPDEAVAVGAAIQGSVLSG----DRKDLLLL 462 (945)
Q Consensus 388 ~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f-g~~~~~~~~p~~avA~GAa~~a~~~~~----~~~~~~~~ 462 (945)
+++..+|+++.++..+|+.|+||||++++|.++..+++.| ++......||+++||+|||++|+.+++ ...++++.
T Consensus 319 ~~v~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~li 398 (620)
T KOG0101|consen 319 EPVEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLI 398 (620)
T ss_pred HHHHHHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeee
Confidence 9999999999999999999999999999999999999999 556678899999999999999999988 35788999
Q ss_pred eeccceeeEEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCCCCCCCCcCeE
Q psy2902 463 DVTPLSLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQI 542 (945)
Q Consensus 463 ~~~~~s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~~~~~~~~~~i 542 (945)
|+.|.++||++.++.|.++|++|+.+|+.++++|++..|||+.+.|.||+|++.+.++|..+|.|.+.++|+.|+|.+.|
T Consensus 399 d~~pl~~gve~a~~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEger~~~kdn~~lg~feL~gippaprgvp~I 478 (620)
T KOG0101|consen 399 DVAPLSLGVETAGGVFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQI 478 (620)
T ss_pred ecccccccccccCCcceeeeecccccceeeeeeeeeecCCCCceeEEEEeccccccccccccceeeecCCCccccCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCccEEEEEeecCCCceeEEEeccC-CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhh
Q psy2902 543 EVTFDIDANGILHVTAKDKKTGKENKITIKAN-SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLK 621 (945)
Q Consensus 543 ~v~~~~d~~g~l~v~a~~~~~g~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~ 621 (945)
+|+|.+|.+|+|.|+|.|..||+...++|.+. ..||.++|++|...++.+..+|...+.+.+++|.+|++++.++..++
T Consensus 479 evtfdiD~ngiL~Vta~d~stgK~~~i~i~n~~grls~~~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~~~f~~~~~~~ 558 (620)
T KOG0101|consen 479 EVTFDIDANGILNVTAVDKSTGKENKITITNDKGRLSKEEIERMVQEAEKYKAEDEKQKDKVAAKNSLESYAFNMKATVE 558 (620)
T ss_pred eEEEecCCCcEEEEeeccccCCccceEEEecccceeehhhhhhhhhhhhhccccCHHHHHHHHHHhhHHHHHHhhhhhhh
Confidence 99999999999999999999999999998876 46999999999999999999999999999999999999999888876
Q ss_pred hhhhhhccChhHHHHHHHHhccc
Q psy2902 622 IKEAYEVLSDSEKRIIYDQYGHA 644 (945)
Q Consensus 622 ~~~~~~~l~~~~k~~~~d~~~~~ 644 (945)
. ..+.+++++++++.+.+.+.
T Consensus 559 ~--~~~~i~~~~~~~~~~~~~~~ 579 (620)
T KOG0101|consen 559 D--EKGKINEEDKQKILDKCNEV 579 (620)
T ss_pred h--hccccChhhhhhHHHHHHHH
Confidence 3 33899999999999998765
No 15
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=3.4e-81 Score=730.79 Aligned_cols=539 Identities=38% Similarity=0.582 Sum_probs=475.6
Q ss_pred ccccccchhhcccccccCCceEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCC
Q psy2902 53 LKILDEDLKRILHARRIMSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPK 132 (945)
Q Consensus 53 ~~~~~~~~~~~~~~~~~m~~viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~ 132 (945)
+++.+|.++..++. |..+||||||||||+||++.++.++++.|..|++.+||+|+|+++ .+++|..|
T Consensus 4 ~~~~~~~~~~~~~~---~~~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~~-~~~vG~~A--------- 70 (595)
T PRK01433 4 IEIREPEQADFKQE---RQIAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSN-NFTIGNNK--------- 70 (595)
T ss_pred EEecCCCCCCcccc---CceEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcCC-CEEECchh---------
Confidence 45556655444442 344899999999999999999999999999999999999999755 58999876
Q ss_pred chhHHHHHhhCCCCCcH----HHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEE
Q psy2902 133 NTIYAAKRLIGRKFNEK----EVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAV 208 (945)
Q Consensus 133 ~~i~~~k~llg~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~V 208 (945)
+++++||++|+++++. .+....+ ...........+.+.+..++|+++++++|++|++.|+.+++..+.++|
T Consensus 71 -ti~~~KrliG~~~~~~~~~~~~~~~~k----~~~~~~~~~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~aV 145 (595)
T PRK01433 71 -GLRSIKRLFGKTLKEILNTPALFSLVK----DYLDVNSSELKLNFANKQLRIPEIAAEIFIYLKNQAEEQLKTNITKAV 145 (595)
T ss_pred -hHHHHHHHhCCCchhhccchhhHhhhh----heeecCCCeeEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCcceEE
Confidence 7899999999988752 2222211 112223344566778899999999999999999999999999999999
Q ss_pred EEcCCCCCHHHHHHHHHHHHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEE
Q psy2902 209 ITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEV 288 (945)
Q Consensus 209 itVPa~~~~~qr~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~v 288 (945)
||||++|++.||+++++||+.|||+++++++||+|||++|+... .....+||||+||||+|+|++++ .++.+++
T Consensus 146 ITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~--~~~~~vlV~DlGGGT~DvSi~~~----~~~~~~V 219 (595)
T PRK01433 146 ITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNK--NQKGCYLVYDLGGGTFDVSILNI----QEGIFQV 219 (595)
T ss_pred EEECCCCCHHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHhccc--CCCCEEEEEECCCCcEEEEEEEE----eCCeEEE
Confidence 99999999999999999999999999999999999999998875 34568999999999999999999 6789999
Q ss_pred EEecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEE
Q psy2902 289 LSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNL 368 (945)
Q Consensus 289 l~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~ 368 (945)
+++.|+.++||++||.+|++|+.++|.. ..+.. .+..||++|+.||....... ..+
T Consensus 220 ~at~gd~~lGG~d~D~~l~~~~~~~~~~------~~~~~----~~~~~ekaK~~LS~~~~~~~--------------~~~ 275 (595)
T PRK01433 220 IATNGDNMLGGNDIDVVITQYLCNKFDL------PNSID----TLQLAKKAKETLTYKDSFNN--------------DNI 275 (595)
T ss_pred EEEcCCcccChHHHHHHHHHHHHHhcCC------CCCHH----HHHHHHHHHHhcCCCccccc--------------ceE
Confidence 9999999999999999999999988742 12222 23459999999998664211 168
Q ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHh
Q psy2902 369 KITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQ 448 (945)
Q Consensus 369 ~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~ 448 (945)
+|||++|+++++++++++..+++++|++++ ..+|+.|+||||+|++|+|+++|++.|+.++....||++|||+|||++
T Consensus 276 ~itr~efe~l~~~l~~~~~~~i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~ 353 (595)
T PRK01433 276 SINKQTLEQLILPLVERTINIAQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQ 353 (595)
T ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHHhhcC--cccCcEEEEECCcccChhHHHHHHHHhCCCceecCCchHHHHHHHHHH
Confidence 999999999999999999999999999998 568999999999999999999999999998888999999999999999
Q ss_pred hhhccCCCCceEEEeeccceeeEEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEE
Q psy2902 449 GSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFN 528 (945)
Q Consensus 449 a~~~~~~~~~~~~~~~~~~s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~ 528 (945)
|+.+++...++++.|++|+++||++.+|.+.+||++|++||+++++.|++..|+|+.+.|.||||++....+|..||++.
T Consensus 354 a~~l~~~~~~~~l~Dv~p~slgi~~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~ 433 (595)
T PRK01433 354 AENLIAPHTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFE 433 (595)
T ss_pred HHHhhCCccceEEEEecccceEEEecCCEEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEeccccccCCCcEEEEEE
Confidence 99998877889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCCCcCeEEEEEEECCCccEEEEEeecCCCceeEEEeccCCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhccc
Q psy2902 529 LEGIPPALRGIPQIEVTFDIDANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNH 608 (945)
Q Consensus 529 i~~~~~~~~~~~~i~v~~~~d~~g~l~v~a~~~~~g~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~ 608 (945)
|.++|+.+.|.++|+|+|++|.||+|+|+|.+..||+...+.|+.+.++|++|+++++++++++..+|...+++.+.+|.
T Consensus 434 l~~i~~~~~g~~~i~vtf~id~~Gil~V~a~~~~t~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~~~ 513 (595)
T PRK01433 434 LKGLPPMKAGSIRAEVTFAIDADGILSVSAYEKISNTSHAIEVKPNHGIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIE 513 (595)
T ss_pred EcCCCCCCCCCccEEEEEEECCCCcEEEEEEEcCCCcEEEEEecCCCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998777899999999999999999999999999999999
Q ss_pred CcceeeeccchhhhhhhhhccChhHHHHHHHHhcc
Q psy2902 609 GESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGH 643 (945)
Q Consensus 609 ~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~ 643 (945)
++.+++..++.++ +..+.++.+++.++.+.+..
T Consensus 514 ~~~~~~~~~~~~~--~~~~~l~~~~~~~i~~~~~~ 546 (595)
T PRK01433 514 AEALIFNIERAIA--ELTTLLSESEISIINSLLDN 546 (595)
T ss_pred HHHHHHHHHHHHH--HhhccCCHHHHHHHHHHHHH
Confidence 9999988888775 34456788888887776554
No 16
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-79 Score=709.88 Aligned_cols=541 Identities=63% Similarity=0.932 Sum_probs=510.3
Q ss_pred CceEEEEcCccceEEEEEeCC-ceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcH
Q psy2902 71 SKIIGIDLGTTNSCVSIIEGS-QPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEK 149 (945)
Q Consensus 71 ~~viGID~GTt~s~va~~~~~-~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~ 149 (945)
+.+||||||||||+||+++++ .+.++.|..|.+.+||+|+|..++++++|..|..++..+|.++++.+||++|+...
T Consensus 5 ~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~-- 82 (579)
T COG0443 5 KKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSN-- 82 (579)
T ss_pred ceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCC--
Confidence 358999999999999999988 79999999999999999999987789999999999999999999999999998611
Q ss_pred HHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHHH
Q psy2902 150 EVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRI 229 (945)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~ 229 (945)
.....+.+.++.++|+++++++|++|++.|+.+++..+..+||||||||++.||+++++|++.
T Consensus 83 -----------------~~~~~~~~~~~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A~~i 145 (579)
T COG0443 83 -----------------GLKISVEVDGKKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARI 145 (579)
T ss_pred -----------------CCcceeeeCCeeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 112456677789999999999999999999999999999999999999999999999999999
Q ss_pred cCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHH
Q psy2902 230 AGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309 (945)
Q Consensus 230 AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~ 309 (945)
|||+++++++||+|||++|+.+.. .+..|||||+||||||+|++++ ..+.++++++.++.++||++||.+|++|
T Consensus 146 aGl~vlrlinEPtAAAlayg~~~~--~~~~vlV~DlGGGTfDvSll~~----~~g~~ev~at~gd~~LGGddfD~~l~~~ 219 (579)
T COG0443 146 AGLNVLRLINEPTAAALAYGLDKG--KEKTVLVYDLGGGTFDVSLLEI----GDGVFEVLATGGDNHLGGDDFDNALIDY 219 (579)
T ss_pred cCCCeEEEecchHHHHHHhHhccC--CCcEEEEEEcCCCCEEEEEEEE----cCCEEEEeecCCCcccCchhHHHHHHHH
Confidence 999999999999999999999884 7889999999999999999999 5679999999999999999999999999
Q ss_pred HHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHH
Q psy2902 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEP 389 (945)
Q Consensus 310 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~ 389 (945)
+.++|..+.+.++..+...+.+|+.+||++|+.||+...+.+.+++...+ .++..++||++||.++.+++.++...
T Consensus 220 ~~~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~----~~~~~~ltR~~~E~l~~dll~r~~~~ 295 (579)
T COG0443 220 LVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGD----IDLLKELTRAKFEELILDLLERTIEP 295 (579)
T ss_pred HHHHhhccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhcccc----chhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999998888999999999999999999999999999999999877654 36789999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhccCCCCceEEEeecccee
Q psy2902 390 CRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSL 469 (945)
Q Consensus 390 i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~~~~~~~~~~~~~~~s~ 469 (945)
+.++|..++++..+|+.|+||||++|||.|++.+++.|+.++...+||+++||.|||++|+.+++..+++++.|++|+++
T Consensus 296 ~~~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~qa~~l~~~~~d~ll~Dv~plsl 375 (579)
T COG0443 296 VEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQAAVLSGEVPDVLLLDVIPLSL 375 (579)
T ss_pred HHHHHHHcCCChhhCceEEEccceeccHHHHHHHHHHhCccccccCCccHHHHHHHHHHHHhhcCcccCceEEeeeeecc
Confidence 99999999999999999999999999999999999999988999999999999999999999999888999999999999
Q ss_pred eEEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCCCCCCCCcCeEEEEEEEC
Q psy2902 470 GIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549 (945)
Q Consensus 470 gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~~~~~~~~~~i~v~~~~d 549 (945)
|+++.++.+..+|++|+.+|.++...|++..|+|+.+.+.+++|++....+|..+|.|.+.++|+.++|.++|+|+|.+|
T Consensus 376 gie~~~~~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~i~v~f~iD 455 (579)
T COG0443 376 GIETLGGVRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDID 455 (579)
T ss_pred ccccCcchhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEecchhhcccCceeEEEECCCCCCCCCCCCceEEEeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEEeecCCCceeEEEeccCCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhcc
Q psy2902 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVL 629 (945)
Q Consensus 550 ~~g~l~v~a~~~~~g~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l 629 (945)
.||+++|++.+..+|+...++|..+.++++++|+.|.+.++.+.+.|+..++..+.+|+++.+++..++.+. +.. .+
T Consensus 456 ~~gi~~v~a~~~~~~k~~~i~i~~~~~ls~~~i~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~--~~~-~~ 532 (579)
T COG0443 456 ANGILNVTAKDLGTGKEQSITIKASSGLSDEEIERMVEDAEANAALDKKFRELVEARNEAESLIYSLEKALK--EIV-KV 532 (579)
T ss_pred CCcceEeeeecccCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHh--hhc-cC
Confidence 999999999999999999999998888999999999999999999999999999999999999998877775 344 77
Q ss_pred ChhHHHHHHHHhcc
Q psy2902 630 SDSEKRIIYDQYGH 643 (945)
Q Consensus 630 ~~~~k~~~~d~~~~ 643 (945)
+.++++++.+.+.+
T Consensus 533 ~~~~~~~~~~~~~~ 546 (579)
T COG0443 533 SEEEKEKIEEAITD 546 (579)
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888777665
No 17
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=3.7e-77 Score=718.71 Aligned_cols=559 Identities=47% Similarity=0.777 Sum_probs=504.8
Q ss_pred eEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcHHHH
Q psy2902 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEKEVQ 152 (945)
Q Consensus 73 viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~~~~ 152 (945)
|||||||||||+||++.++.++++.+..|++.+||+|+|.++ ++++|..|...+.++|.++++++|+|||++++++.++
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~~-~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~ 79 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSDN-ERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQ 79 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEESS-CEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHH
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccccccceeeEeee-cccCCcchhhhcccccccccccccccccccccccccc
Confidence 699999999999999999999999999999999999999876 8899999999999999999999999999999999999
Q ss_pred hhhcCCCeeEEecCCCceEEEEC--Ce--eeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHH
Q psy2902 153 KDISLMPYKIVKADNGDAWISVR--GK--KLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGR 228 (945)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~ 228 (945)
.+...+||.++..+++...+.+. +. .++|+++++++|++|++.++.+++..+.++|||||++|++.||+++++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~ 159 (602)
T PF00012_consen 80 KEKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAE 159 (602)
T ss_dssp HHHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHH
T ss_pred hhhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhccccccc
Confidence 99999999999888888877764 54 899999999999999999999999999999999999999999999999999
Q ss_pred HcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHH
Q psy2902 229 IAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIID 308 (945)
Q Consensus 229 ~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~ 308 (945)
.|||+++++++||+|||++|+..... .++++||||+||||+|++++++ .++.+++++..++..+||.+||.+|++
T Consensus 160 ~agl~~~~li~Ep~Aaa~~y~~~~~~-~~~~vlv~D~Gggt~dvs~~~~----~~~~~~v~~~~~~~~lGG~~~D~~l~~ 234 (602)
T PF00012_consen 160 LAGLNVLRLINEPTAAALAYGLERSD-KGKTVLVVDFGGGTFDVSVVEF----SNGQFEVLATAGDNNLGGRDFDEALAE 234 (602)
T ss_dssp HTT-EEEEEEEHHHHHHHHTTTTSSS-SEEEEEEEEEESSEEEEEEEEE----ETTEEEEEEEEEETTCSHHHHHHHHHH
T ss_pred ccccccceeecccccccccccccccc-cccceeccccccceEeeeehhc----ccccccccccccccccccceecceeec
Confidence 99999999999999999999877753 6889999999999999999999 567999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcC--CcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHH
Q psy2902 309 YILDEFNKINGIDLRKDSIALQRIKASAERAKIELSS--SKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRT 386 (945)
Q Consensus 309 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~--~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i 386 (945)
|+.++|...++.+...+++.+.+|+.+||++|+.||. .....+.++.+.... .++.+.|||++|++++.++++++
T Consensus 235 ~~~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~---~~~~~~itr~~fe~l~~~~~~~~ 311 (602)
T PF00012_consen 235 YLLEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDG---EDFSITITREEFEELCEPLLERI 311 (602)
T ss_dssp HHHHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTT---EEEEEEEEHHHHHHHTHHHHHHT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccc---cccccccccceeccccccccccc
Confidence 9999999998888888999999999999999999999 555566666555421 58999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhccC--CCCceEEEee
Q psy2902 387 IEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSG--DRKDLLLLDV 464 (945)
Q Consensus 387 ~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~~--~~~~~~~~~~ 464 (945)
..++.++|++++.+..+|+.|+|+||+|++|+|++.|++.|+..+....||++|||+|||++|+.+++ ..+++.+.|+
T Consensus 312 ~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~~~~~~~~~~~~~~d~ 391 (602)
T PF00012_consen 312 IEPIEKALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAAILSGSFRVKDIKIIDV 391 (602)
T ss_dssp HHHHHHHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHHHHHTSCSSTSSCESEB
T ss_pred ccccccccccccccccccceeEEecCcccchhhhhhhhhccccccccccccccccccccccchhhhcccccccccccccc
Confidence 99999999999999999999999999999999999999999987888999999999999999999987 5678889999
Q ss_pred ccceeeEEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCCCCCCCCcCeEEE
Q psy2902 465 TPLSLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEV 544 (945)
Q Consensus 465 ~~~s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~~~~~~~~~~i~v 544 (945)
+|++|||++.++.+.+++++|+++|...+..|.+..++|+.+.|.||+|+.....+|..||++.|.++++.+.+.++|+|
T Consensus 392 ~~~~~~i~~~~~~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v 471 (602)
T PF00012_consen 392 TPFSIGIEVSNGKFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESSSFEDNKKIGSYTISGIPPAPKGKPKIKV 471 (602)
T ss_dssp ESSEEEEEETTTEEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEES-SSSSTTSSEEEE
T ss_pred ccccccccccccccccccccccccccccccccchhccccccccceeeeccccccccccccccccccccccccccccceee
Confidence 99999999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred EEEECCCccEEEEEeecCCCceeEEEeccCCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhh
Q psy2902 545 TFDIDANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKE 624 (945)
Q Consensus 545 ~~~~d~~g~l~v~a~~~~~g~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~ 624 (945)
+|++|.+|+|+|++.+..++....+++.....+++++++++.++++++...|+..++..+++|.+|++++.+++.++.
T Consensus 472 ~f~ld~~Gil~V~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~e~kn~lE~~i~~~r~~l~~-- 549 (602)
T PF00012_consen 472 TFELDENGILSVEAAEVETGKEEEVTVKKKETLSKEEIEELKKKLEEMDEEDEERRERAEAKNELESYIYELRDKLEE-- 549 (602)
T ss_dssp EEEEETTSEEEEEEEETTTTEEEEEEEESSSSSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred EEeeeeeeehhhhhcccccccccccccccccccccccccccccccchhhhhhhhhhhccccHHHHHHHHHHHHHHHHh--
Confidence 999999999999999999999988898877679999999999999999999999999999999999999999998863
Q ss_pred hhhccChhHH-HHHHHHhc
Q psy2902 625 AYEVLSDSEK-RIIYDQYG 642 (945)
Q Consensus 625 ~~~~l~~~~k-~~~~d~~~ 642 (945)
.++.+..+++ .++.+...
T Consensus 550 ~~~~~~~~~~~~~l~~~~~ 568 (602)
T PF00012_consen 550 DKDFVSEEEKKKKLKETSD 568 (602)
T ss_dssp CGGGSTHHHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHH
Confidence 3788887776 45444433
No 18
>KOG0103|consensus
Probab=100.00 E-value=3.6e-68 Score=583.91 Aligned_cols=560 Identities=31% Similarity=0.511 Sum_probs=506.9
Q ss_pred CCceEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcH
Q psy2902 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEK 149 (945)
Q Consensus 70 m~~viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~ 149 (945)
|+ ++|||||..+|.+|+.+.++.++|.|+.+++.+|++++|..+ .+++|.+|..+...++.+++..+||++|+++++|
T Consensus 1 ms-vvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg~K-~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP 78 (727)
T KOG0103|consen 1 MS-VVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGPK-NRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDP 78 (727)
T ss_pred CC-ceeeeccccceeeeeeccCCceeeeeccccccCcceeeeccc-cceeeeccccceeecccccchhhhhhhccccCCh
Confidence 45 899999999999999999999999999999999999999876 7899999999999999999999999999999999
Q ss_pred HHHhhhcCCCeeEEecCCCceEEEEC----CeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHH
Q psy2902 150 EVQKDISLMPYKIVKADNGDAWISVR----GKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKD 225 (945)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~ 225 (945)
+++.+...+|+.++...++.+.+.++ .+.+++++|++|+|.+++..++..+..++.++||+||+||++.||.++.+
T Consensus 79 ~~q~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravld 158 (727)
T KOG0103|consen 79 EVQREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLD 158 (727)
T ss_pred HhhhcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHh
Confidence 99999999999999999999888875 35799999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCccceecchhHHHHHHhccCCC-----CCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchH
Q psy2902 226 AGRIAGLEVKRIINEPTAAALAFGLDKS-----GKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGE 300 (945)
Q Consensus 226 Aa~~AGl~~v~li~Ep~AAAl~~~~~~~-----~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~ 300 (945)
||+.|||+.+++++|.+|+|++|+..+. ...+.+|+++|+|.+++.++++.+ ..+.+.++++.++..+||.
T Consensus 159 AA~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF----~kG~lkvl~ta~D~~lGgr 234 (727)
T KOG0103|consen 159 AARIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAF----TKGKLKVLATAFDRKLGGR 234 (727)
T ss_pred HHhhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeee----ccCcceeeeeecccccccc
Confidence 9999999999999999999999998765 234678999999999999999999 8899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHH
Q psy2902 301 DFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVD 380 (945)
Q Consensus 301 ~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~ 380 (945)
+||+.|.+|+.++|+.+++++++.++++..||+.+||++|+.||++....++++.++.+. +.+..|+|++||+++.
T Consensus 235 ~fDe~L~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~----dvs~~i~ReEfEel~~ 310 (727)
T KOG0103|consen 235 DFDEALIDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDK----DVSSKIKREEFEELSA 310 (727)
T ss_pred hHHHHHHHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecc----hhhhhccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998876 7889999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhccC--CCCc
Q psy2902 381 ELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSG--DRKD 458 (945)
Q Consensus 381 ~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~~--~~~~ 458 (945)
|+++++..++..+|+++++...||+.|.+|||+||+|.|.++|+++||++..+++|.++|||+|||+++|++|+ ++.+
T Consensus 311 plL~rv~~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~ALqcAIlSP~frVRe 390 (727)
T KOG0103|consen 311 PLLERVEVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAALQCAILSPTFRVRE 390 (727)
T ss_pred HHHHhhhHHHHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHHHHHHhcCcccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997 6788
Q ss_pred eEEEeeccceeeEEEe----C-CEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecC-cccccCCceEEEEEEcCC
Q psy2902 459 LLLLDVTPLSLGIETM----G-GIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGE-REMVSGNKILGEFNLEGI 532 (945)
Q Consensus 459 ~~~~~~~~~s~gi~~~----~-~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~-~~~~~~~~~lg~~~i~~~ 532 (945)
+.+.|+.|+++.+.|. + +....+|++|.++|..+..+|.... .|++.++++. ...+.....|++|.+.++
T Consensus 391 f~v~Di~pysIs~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~~Rk~----~F~lea~yt~~~~lp~~~~kI~~~~i~~v 466 (727)
T KOG0103|consen 391 FSVEDIVPYSISLRWVKQGEDGGSVTEVFPKGHPSPSVKLLTFNRKG----PFTLEAKYTKVNKLPYPKPKIEKWTITGV 466 (727)
T ss_pred cceecccceeEEEEeccccccCCCceeeecCCCCCCCceEEEEEecC----ceEEEEEeccccccCCCCCceeeEEeccc
Confidence 9999999999999864 3 5557899999999999888887654 4888888876 444445678999999998
Q ss_pred CCCCC-CcCeEEEEEEECCCccEEEEEee----------------------------cCCCc----eeEEEec--cCCCC
Q psy2902 533 PPALR-GIPQIEVTFDIDANGILHVTAKD----------------------------KKTGK----ENKITIK--ANSGL 577 (945)
Q Consensus 533 ~~~~~-~~~~i~v~~~~d~~g~l~v~a~~----------------------------~~~g~----~~~~~i~--~~~~~ 577 (945)
.+... ...++.|.+.++.+|+++|.-.- +..++ .+.+.+. ...++
T Consensus 467 ~~~~~ge~skVKvkvr~n~~Gi~~i~sA~~~e~~~veev~~~~~e~~~~~~~~~~~~~~~~k~kvk~~~L~~~~~~~~~l 546 (727)
T KOG0103|consen 467 TPSEDGEFSKVKVKVRLNEHGIDTIESATLIEDIEVEEVPEEPMEYDDAAKMLERIAPAENKKKVKKVDLPIEAYTKGAL 546 (727)
T ss_pred ccCccccccceeEEEEEcCccceeeecceeecccchhccccchhhhhcchhhhhhhccccccceeeeccccceeeecccc
Confidence 77666 45679999999999999886310 00111 1223332 22469
Q ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccc
Q psy2902 578 TEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHA 644 (945)
Q Consensus 578 ~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~ 644 (945)
+.++++..++++.+|...|+...++...+|.+|+|+|++++++. ..|.++.++.++.++...+.+.
T Consensus 547 ~~~~l~~~~e~E~~M~~qD~~~~Et~D~KNaleeyVY~~R~kl~-~~y~~f~~~a~~e~~~~~l~~~ 612 (727)
T KOG0103|consen 547 ITDELELYIEKENKMILQDKLEKETVDAKNALEEYVYDMRDKLS-DKYEDFITDAEREKLKKMLTDT 612 (727)
T ss_pred CHHHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHHHHHHHHHhh-hhhhhhcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 4777889999998887777654
No 19
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-69 Score=566.44 Aligned_cols=353 Identities=50% Similarity=0.877 Sum_probs=312.5
Q ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCCC
Q psy2902 575 SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSS 654 (945)
Q Consensus 575 ~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~~ 654 (945)
..-|++||.++.++++..+++|++. . ...+.++|++|++||++|||++||++||++|+.+++++++|++
T Consensus 14 k~As~~EIKkAYRkLA~kyHPD~n~---------g--~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~gg~ 82 (371)
T COG0484 14 KDASEEEIKKAYRKLAKKYHPDRNP---------G--DKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFGGF 82 (371)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCC---------C--CHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcCCC
Confidence 3568999999999999999999854 1 1134468999999999999999999999999999874333221
Q ss_pred -cccccccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCccccccCcCc
Q psy2902 655 -ASAEASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSP 733 (945)
Q Consensus 655 -~~~~~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~~~ 733 (945)
+++++.+|+|+|++|||++.+ .+.++.++.+|.|+.+.|+++|++++.|.++.+.+++..+|+.|+|+|....+..
T Consensus 83 g~~~fgg~~~DIF~~~FgGg~~---~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~ 159 (371)
T COG0484 83 GFGGFGGDFGDIFEDFFGGGGG---GRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDP 159 (371)
T ss_pred CcCCCCCCHHHHHHHhhcCCCc---ccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCC
Confidence 121222677888888863322 1222344678999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCceEeEee--ceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCCCCC
Q psy2902 734 ISCFTCSGQGQVRMQQ--GFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGL 811 (945)
Q Consensus 734 ~~C~~C~G~G~~~~~~--~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~~~~ 811 (945)
.+|++|+|+|++++.+ |+++++.+|+.|+|.|++++++|..|+|.|.+.+.++++|+||+|+.+|++|++.|+|++..
T Consensus 160 ~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ir~~g~G~~g~ 239 (371)
T COG0484 160 KTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAGP 239 (371)
T ss_pred CcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECCCCCCCCCCCCeEeeeeEEEEECCCCCccCCEEEEecCcccCC
Confidence 9999999999998888 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCCCCCCcEEEECCCCcCCCCCC
Q psy2902 812 NGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRSS 891 (945)
Q Consensus 812 ~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~~~~g~~~~i~g~G~~~~~~~ 891 (945)
+++++|||||.|.|++|+.|.|+|+|||++++|++.+|+||++++||||||.+.+.||+++|+|+++||+|+|||..++.
T Consensus 240 ~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~~~l~ip~Gtq~G~~~rl~gkG~p~~~~~ 319 (371)
T COG0484 240 NGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRVKLKIPAGTQTGEVFRLRGKGMPKLRSG 319 (371)
T ss_pred CCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCCEEEecCCCCccCcEEEEcCCCccccCCC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred CCccEEEEEEEECCCCCCHHHHHHHHHHHHhhhcCCCCCCCcchhHHHHhhhcC
Q psy2902 892 IPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRTKTVLNKVKNFF 945 (945)
Q Consensus 892 ~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (945)
.+|||||+++|.+|+.||++|+++|++|+++..+ ...++| ++|.++|+||
T Consensus 320 ~~GDl~v~v~v~~P~~ls~~q~~lL~~~~~~~~~-~~~~~~---~~~~k~k~~f 369 (371)
T COG0484 320 GRGDLYVRVKVETPKNLSDEQKELLEEFAKSLGE-GPEQSP---GFFDKLKNFF 369 (371)
T ss_pred CcCCEEEEEEEEcCCCCCHHHHHHHHHHHHhhcc-ccccCh---hhhHHhHhhc
Confidence 7899999999999999999999999999998632 223233 8999999997
No 20
>KOG0104|consensus
Probab=100.00 E-value=1.3e-62 Score=539.88 Aligned_cols=558 Identities=28% Similarity=0.439 Sum_probs=482.5
Q ss_pred ceEEEEcCccceEEEEEeCCce-EEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcHH
Q psy2902 72 KIIGIDLGTTNSCVSIIEGSQP-KVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEKE 150 (945)
Q Consensus 72 ~viGID~GTt~s~va~~~~~~~-~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~~ 150 (945)
++++||+||.+++|+++.+|-| +++.|..++|++|++|+|. +++++||.+|.....++|..++.+++.|||+...++.
T Consensus 23 AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk-~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~~~ 101 (902)
T KOG0104|consen 23 AVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFK-GGERIFGEAAASMATRFPQSTYRQLKDLLGKSLDDPT 101 (902)
T ss_pred hheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEec-CCceehhhhhhhhhhcCcHHHHHHHHHHhCcccCCcH
Confidence 4799999999999999999987 7888999999999999997 5589999999999999999999999999999999998
Q ss_pred HHhhhcCCC-eeEEecC-CCceEEEECC-eeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHH
Q psy2902 151 VQKDISLMP-YKIVKAD-NGDAWISVRG-KKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAG 227 (945)
Q Consensus 151 ~~~~~~~~~-~~~~~~~-~~~~~~~~~~-~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa 227 (945)
+....+.+| |.++.++ ...+.|.+.+ ..|+++++++|+|.+.+..|+.+...++.++|||||.+|++.+|.++.+||
T Consensus 102 v~ly~~~~p~~e~v~d~~rstV~F~i~d~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all~Aa 181 (902)
T KOG0104|consen 102 VDLYQKRFPFFELVEDPQRSTVVFKISDQEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALLQAA 181 (902)
T ss_pred HHHHHhcCCceeecccCccceEEEEeCCccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHHHHHHH
Confidence 877777766 5677664 7788999988 799999999999999999999999999999999999999999999999999
Q ss_pred HHcCCccceecchhHHHHHHhccCCC---CCCCceEEEEEeCCcceEEEEEEEEeec------CCceEEEEEecCCCCCc
Q psy2902 228 RIAGLEVKRIINEPTAAALAFGLDKS---GKSDRNIVVYDLGGGTFDVSIIEIADVD------GEKQFEVLSTNGDTFLG 298 (945)
Q Consensus 228 ~~AGl~~v~li~Ep~AAAl~~~~~~~---~~~~~~vlVvD~GggT~dvsv~~~~~~~------~~~~~~vl~~~~~~~lG 298 (945)
++||+++++||+|.+|||+.|++.+. ...+++++|||||+|++.++++.+.... ....+++++.+++..||
T Consensus 182 ~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~tLG 261 (902)
T KOG0104|consen 182 QIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDRTLG 261 (902)
T ss_pred HhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCCccc
Confidence 99999999999999999999998864 4568899999999999999999986431 23689999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhC--CCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHH
Q psy2902 299 GEDFDQRIIDYILDEFNKING--IDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLE 376 (945)
Q Consensus 299 G~~iD~~l~~~l~~~~~~~~~--~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e 376 (945)
|..|+.+|.+|+.+.|.+..+ .++..+++++++|.++|+++|..||++..+.+.++.+.++. |+...|||++||
T Consensus 262 G~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~ddi----DFr~kvTRe~fE 337 (902)
T KOG0104|consen 262 GLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDDI----DFRLKVTREEFE 337 (902)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhcc----ccccceeHHHHH
Confidence 999999999999999998876 46788999999999999999999999999999999998876 899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCC-CCCCCCCCCchhhhhHHHhhhhccC-
Q psy2902 377 LLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK-DPRRDINPDEAVAVGAAIQGSVLSG- 454 (945)
Q Consensus 377 ~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~-~~~~~~~p~~avA~GAa~~a~~~~~- 454 (945)
++|.++..++..+|.++|..+.++.++|+.|+|.||++|+|.||+.|.+..+. ++...+|.|||+|+||+++||.++.
T Consensus 338 elc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LSks 417 (902)
T KOG0104|consen 338 ELCADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLSKS 417 (902)
T ss_pred HHHHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999975 5678899999999999999999987
Q ss_pred -CCCceEEEeeccceeeEEEeCC--------EEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEE
Q psy2902 455 -DRKDLLLLDVTPLSLGIETMGG--------IMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILG 525 (945)
Q Consensus 455 -~~~~~~~~~~~~~s~gi~~~~~--------~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg 525 (945)
.++++.+.|.+.|+|-++.... ....+|+++.++|..++.+|+.+.|+ |.+.+-.+.-. ..+-
T Consensus 418 FKvKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysdd---f~~~~n~~~~~-----~nl~ 489 (902)
T KOG0104|consen 418 FKVKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDD---FPFNINYGDLG-----QNLT 489 (902)
T ss_pred ccccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCCc---cccccchhhhc-----cCcc
Confidence 6788999999999998875432 23468999999999988878766653 44444333211 2234
Q ss_pred EEEEcCCCCC----CC---CcCeEEEEEEECCCccEEEEEeecC---------------------C--------------
Q psy2902 526 EFNLEGIPPA----LR---GIPQIEVTFDIDANGILHVTAKDKK---------------------T-------------- 563 (945)
Q Consensus 526 ~~~i~~~~~~----~~---~~~~i~v~~~~d~~g~l~v~a~~~~---------------------~-------------- 563 (945)
++.++++... +. ....|.++|.+|.+|++.|+..+.. +
T Consensus 490 ~velsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~evv~e~~~~~d~~~~~st~~K~~~~~e~e~~~~~~~~~e 569 (902)
T KOG0104|consen 490 TVELSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVVFEKQKEEDSGDKKSTLSKLGSTSEGEETSDDSVQEE 569 (902)
T ss_pred EEEEecchHHHHhcccchhhccCceEEEEEcCcCceEEeeeeEEEeccCCcccchhhhhhhccccccccccccccccchh
Confidence 6667665432 11 1235999999999999988742110 0
Q ss_pred ---------Cc--------------------------------------eeEEEeccCC----CCcHHHHHHHHHHHHHh
Q psy2902 564 ---------GK--------------------------------------ENKITIKANS----GLTEEEIKKMVQSAEAN 592 (945)
Q Consensus 564 ---------g~--------------------------------------~~~~~i~~~~----~~~~~~i~~~~~~~~~~ 592 (945)
++ .+.+.|+..+ .|++..+....++++.+
T Consensus 570 ~ae~k~~ep~e~se~~ee~~~d~s~e~k~e~~t~e~~~~~~~~~~~~p~~~~~~i~~~~~~~~~l~~~~~~~~~~kl~d~ 649 (902)
T KOG0104|consen 570 DAEEKGLEPSERSELEEEAEEDASQEDKTEKETSEAQKPTEKKETPAPMVVRLQIQETYPDLPVLNENALDAAVAKLEDF 649 (902)
T ss_pred hhhhhccCccccccccccccccccccccccccchhccCcchhhcccCcceeEeeeeeecccccCCchhHHHHHHHHHHHH
Confidence 00 0124555433 48899999999999999
Q ss_pred HHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhc
Q psy2902 593 AEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYG 642 (945)
Q Consensus 593 ~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~ 642 (945)
...++..-++.++-|.+|.+++.++..+...++.++..++|+..+.+.+.
T Consensus 650 ~~~e~~k~~re~a~N~LE~~l~e~q~~l~d~ey~e~at~EEk~~L~~~~~ 699 (902)
T KOG0104|consen 650 VQKEKEKSEREEASNELEAFLFELQDKLDDDEYAEVATEEEKKILKKKVS 699 (902)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHhcCchHhhhcCHHHHHHHHHHHH
Confidence 99999999999999999999999999998888889999999988776554
No 21
>PRK14288 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.2e-58 Score=505.25 Aligned_cols=352 Identities=34% Similarity=0.625 Sum_probs=294.5
Q ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCCC
Q psy2902 575 SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSS 654 (945)
Q Consensus 575 ~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~~ 654 (945)
...|++||.+..++++..+++|+.. .+. .+.++|.+|++||++|+|+++|++||++|+.+++.+.++ +
T Consensus 13 ~~As~~eIkkayrkla~k~HPD~~~---------~~~--~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~~~-~ 80 (369)
T PRK14288 13 KHSNQETIKKSYRKLALKYHPDRNA---------GDK--EAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAGAS-Q 80 (369)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCC---------Ccc--HHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCCCC-c
Confidence 3478999999999999999999732 111 234578899999999999999999999998877532111 1
Q ss_pred cccccccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCccccccCcCcc
Q psy2902 655 ASAEASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPI 734 (945)
Q Consensus 655 ~~~~~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~~~~ 734 (945)
++ + .+|.+.|++||+++||+++.......+.++.|+.++|+++|+++|.|+++.+.+.+...|+.|+|+|.... ...
T Consensus 81 ~~-~-~~~f~~~~~~F~~~fg~g~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~-~~~ 157 (369)
T PRK14288 81 SD-F-SDFFEDLGSFFEDAFGFGARGSKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDK-ALE 157 (369)
T ss_pred cc-c-ccchhhHHHHHHhhcCCCCcccCcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCC-CCc
Confidence 11 1 11112233455554442211111122356889999999999999999999999999999999999999875 568
Q ss_pred cCCCCCCCceEeEeeceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCCCCCCCC
Q psy2902 735 SCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLNGG 814 (945)
Q Consensus 735 ~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~ 814 (945)
+|+.|+|+|.+.+..|+++++.+|+.|.|+|+++.++|..|.|.|.+.+.++++|.||+|+++|++|+|+|+|++.++ +
T Consensus 158 ~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l~g~G~~~~~-~ 236 (369)
T PRK14288 158 TCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKGNEYEK-G 236 (369)
T ss_pred CCCCCCCCcEEEEEeceEEEEEecCCCCCCceEccccCccCCCcceEEEEEEEEEecCCCCCCCCEEEEccCccCCCC-C
Confidence 999999999998888999999999999999999999999999999999999999999999999999999999999664 6
Q ss_pred CCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCe-EEEEeCCCCCCCcEEEECCCCcCCCCCCCC
Q psy2902 815 SNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGK-AFFVIPEGTQSGKIFRLRGKGIKNIRSSIP 893 (945)
Q Consensus 815 ~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~-~~~~i~~~~~~g~~~~i~g~G~~~~~~~~~ 893 (945)
.+|||||+|++++|+.|+|+|+||+++++|+|.|||+|+++.|+||||+ +.+.||++++||++++|+|+|||..+...+
T Consensus 237 ~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~~~~g~~~~i~g~G~p~~~~~~~ 316 (369)
T PRK14288 237 KRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDRQTFAFRNEGVKHPESSYR 316 (369)
T ss_pred CCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCCCCCCcEEEEcCCCCCCCCCCCC
Confidence 7899999999999999999999999999999999999999999999997 688899999999999999999997665568
Q ss_pred ccEEEEEEEECCCCCCHHHHHHHHHHHHhhhcCCCCCCCcc---hhHHHHhhhcC
Q psy2902 894 GDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRT---KTVLNKVKNFF 945 (945)
Q Consensus 894 Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 945 (945)
|||||+|+|.+|+.|+++|+++|++|+..... ..+|+. .++++.+++||
T Consensus 317 GDL~v~~~v~~P~~ls~~q~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 368 (369)
T PRK14288 317 GSLIVELQVIYPKSLNKEQQELLEKLHASFGY---EGEPHKSVLETCISKIKDWF 368 (369)
T ss_pred CCEEEEEEEECCCCCCHHHHHHHHHHHhhcCc---ccCccccchhhHHHHHHHhh
Confidence 99999999999999999999999999976321 223444 68899888887
No 22
>PRK14298 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.4e-57 Score=500.08 Aligned_cols=353 Identities=41% Similarity=0.726 Sum_probs=297.0
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCCC-
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSS- 654 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~~- 654 (945)
..|.+||.+..++++...++|+... -.+.++|.++++||++|+|+++|++||++|+.|++.+.++.+
T Consensus 16 ~a~~~eik~ayr~la~~~HPD~~~~------------~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~~ 83 (377)
T PRK14298 16 DASVEDIKKAYRKLAMKYHPDKNKE------------PDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAEDI 83 (377)
T ss_pred CCCHHHHHHHHHHHHHHhCccccCC------------hhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCcccc
Confidence 4688999999999999999997321 112357788999999999999999999999887763221110
Q ss_pred -cccccccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCccccccCcCc
Q psy2902 655 -ASAEASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSP 733 (945)
Q Consensus 655 -~~~~~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~~~ 733 (945)
++.++.+|+|+|++|||+. +.+ ..+++.++.|++++|+++|++++.|.++.+.+.+...|+.|+|+|.......
T Consensus 84 ~~~~~~~~~~d~f~~~Fgg~----~~~-~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~ 158 (377)
T PRK14298 84 FRGADFGGFGDIFEMFFGGG----GRR-GRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSP 158 (377)
T ss_pred cccCCcCcchhhhHhhhcCC----Ccc-CCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCCCC
Confidence 0011123556666666531 111 1123456889999999999999999999999999999999999999988888
Q ss_pred ccCCCCCCCceEeEee----ceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCCC
Q psy2902 734 ISCFTCSGQGQVRMQQ----GFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEP 809 (945)
Q Consensus 734 ~~C~~C~G~G~~~~~~----~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~~ 809 (945)
.+|+.|+|+|.+.... |+++++.+|+.|+|.|+++.++|..|.|.|.+.+.++++|+||||+++|++|+|+|+|++
T Consensus 159 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~~~g~G~~ 238 (377)
T PRK14298 159 KRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGADSGLRLKLSGEGEA 238 (377)
T ss_pred CcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccEEEEEEEEEecCCCCCCCCCEEEEecccCC
Confidence 9999999999875443 667889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCCCCCCcEEEECCCCcCCCC
Q psy2902 810 GLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIR 889 (945)
Q Consensus 810 ~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~~~~g~~~~i~g~G~~~~~ 889 (945)
.+.++.+|||||+|++++|+.|+|+|+||+++++|+|.||++|+++.|+||||++.+.||+++++|++++|+|+|||..+
T Consensus 239 ~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~~lri~g~G~p~~~ 318 (377)
T PRK14298 239 GSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGKVKMNIPPGTQTHSVFRLKDKGMPRLH 318 (377)
T ss_pred CCCCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCCCCEEEEeCCCcccCCEEEECCCCCCCCC
Confidence 77777899999999999999999999999999999999999999999999999988999999999999999999999766
Q ss_pred CCCCccEEEEEEEECCCCCCHHHHHHHHHHHHhhhcCCCC-CCCcchhHHHHhhhcC
Q psy2902 890 SSIPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFK-HNPRTKTVLNKVKNFF 945 (945)
Q Consensus 890 ~~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 945 (945)
++.+|||||+|+|.+|+.|+++++++|+++++......++ ..++..++|.++++||
T Consensus 319 ~~~~GDL~V~~~V~~P~~ls~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (377)
T PRK14298 319 GHGKGDQLVKVIVKTPTKLTQEQKELLREFDELSNGKNPSKAGKKKKGIFDKVKDAF 375 (377)
T ss_pred CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhcccccccccCcccccHHHHHHHHh
Confidence 5668999999999999999999999999998753211111 2245568999999887
No 23
>PRK14277 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.2e-57 Score=501.12 Aligned_cols=356 Identities=46% Similarity=0.830 Sum_probs=300.4
Q ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCC-
Q psy2902 575 SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGS- 653 (945)
Q Consensus 575 ~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~- 653 (945)
...|.+||.+..++++...++|+.. .+. .+.++|.++++||++|+|+++|++||.+|+.+++++..++
T Consensus 15 ~~a~~~eik~ayr~la~~~HPD~~~---------~~~--~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~ 83 (386)
T PRK14277 15 RNATEEEIKKAYRRLAKKYHPDLNP---------GDK--EAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFGQG 83 (386)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCcCC---------Cch--HHHHHHHHHHHHHHHhCCHHHHHHHHhhccccccccccccC
Confidence 3578999999999999999999732 111 2335788999999999999999999999988775321110
Q ss_pred --C-cc----cc---cccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCC
Q psy2902 654 --S-AS----AE---ASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCY 723 (945)
Q Consensus 654 --~-~~----~~---~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~ 723 (945)
+ ++ ++ .++|.|+|++||+++||+++.+ ...++.++.|+++.|+++|+++|.|.++.+.+.+.+.|+.|+
T Consensus 84 ~~~~~g~~~~~~~~~~~~~~d~f~~~F~~~fgg~~~~-~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~~C~ 162 (386)
T PRK14277 84 GFGQGGFGGGGFDFDFGGFGDIFEDIFGDFFGTGRRR-AETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCK 162 (386)
T ss_pred CcCCCCccccCccccccchhHHHHHhhcccccCCCcC-CCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCCCCC
Confidence 0 11 00 1235577888888766532211 112245688999999999999999999999999999999999
Q ss_pred ccccccCcCcccCCCCCCCceEeEe----eceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCe
Q psy2902 724 GNGAKKGTSPISCFTCSGQGQVRMQ----QGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNM 799 (945)
Q Consensus 724 G~G~~~~~~~~~C~~C~G~G~~~~~----~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~ 799 (945)
|+|........+|+.|+|+|.+... .|+++...+|+.|+|.|.++.++|..|.|.|.+.+.++++|+||+|+++|+
T Consensus 163 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~ 242 (386)
T PRK14277 163 GSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKVNIPAGIDDGQ 242 (386)
T ss_pred CCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCCcEEeeeeEEEEecCCCccCCc
Confidence 9999988888999999999987433 377777789999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCCCCCCcEEE
Q psy2902 800 RIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFR 879 (945)
Q Consensus 800 ~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~~~~g~~~~ 879 (945)
+++|+|+|++.+.++.+|||||+|++++|+.|+|+|+||+++++|+|.||++|+++.|+||||++.+.||+++++|++++
T Consensus 243 ~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~~r 322 (386)
T PRK14277 243 MITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGKVKFTIPEGTQTGTKFR 322 (386)
T ss_pred EEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCCEEEEECCCCCCCCEEE
Confidence 99999999997766678999999999999999999999999999999999999999999999998889999999999999
Q ss_pred ECCCCcCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHHHHhhhcCCCCCCCcchhHHHHhhhcC
Q psy2902 880 LRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRTKTVLNKVKNFF 945 (945)
Q Consensus 880 i~g~G~~~~~~~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (945)
|+|+|||..+++.+|||||+|+|.||+.||++|+++|++|++.... ....+.++++.++++||
T Consensus 323 i~g~G~p~~~~~~~GDL~v~~~V~~P~~Ls~~qk~~l~~l~~~~~~---~~~~~~~~~~~~~~~~~ 385 (386)
T PRK14277 323 LRGKGIPHLRGRGRGDQIVKVYIEVPKKLTEKQKELLREFEKLSGE---EGTESRKSFFQRMKDAF 385 (386)
T ss_pred ECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHHHHHHHHhhccc---ccCcccccHHHHHHHhh
Confidence 9999999766566899999999999999999999999999865321 12335568999999997
No 24
>PRK14287 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.3e-56 Score=495.04 Aligned_cols=351 Identities=39% Similarity=0.735 Sum_probs=297.8
Q ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCCC
Q psy2902 575 SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSS 654 (945)
Q Consensus 575 ~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~~ 654 (945)
...|.+||.+..++++..+++|+.. . -.+.++|.++++||++|+|+++|++||++|+.+++.+.++++
T Consensus 14 ~~a~~~eik~ayr~la~~~HpD~~~---------~---~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~~~ 81 (371)
T PRK14287 14 RNASVDEVKKAYRKLARKYHPDVNK---------A---PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGGGG 81 (371)
T ss_pred CCCCHHHHHHHHHHHHHHHCcCCCC---------C---hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCCCC
Confidence 3578899999999999999999631 1 123357889999999999999999999999887754321111
Q ss_pred cccccccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCccccccCcCcc
Q psy2902 655 ASAEASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPI 734 (945)
Q Consensus 655 ~~~~~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~~~~ 734 (945)
++ ++.+|.|+|++||++. ++. + ..+.+.++.|++++|+++|+++|.|.++.+.+.+...|+.|+|+|........
T Consensus 82 ~~-~f~~~~d~f~~~fgg~--~~~-~-~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~ 156 (371)
T PRK14287 82 AG-DFGGFSDIFDMFFGGG--GGR-R-NPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPE 156 (371)
T ss_pred Cc-cccchHHHHHhhhccc--cCC-C-CCCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCc
Confidence 11 1123556777777532 111 1 11223468899999999999999999999999999999999999999888888
Q ss_pred cCCCCCCCceEeEe----eceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCCCC
Q psy2902 735 SCFTCSGQGQVRMQ----QGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPG 810 (945)
Q Consensus 735 ~C~~C~G~G~~~~~----~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~~~ 810 (945)
+|+.|+|+|.+.+. .|+++.+.+|+.|.|+|+++.++|..|.|.+.+.+.++++|.||+|+++|++|+|+|+|++.
T Consensus 157 ~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~ 236 (371)
T PRK14287 157 TCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVSGQGEAG 236 (371)
T ss_pred ccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEEEccCCcCC
Confidence 99999999987543 37778889999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCCCCCCcEEEECCCCcCCCCC
Q psy2902 811 LNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRS 890 (945)
Q Consensus 811 ~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~~~~g~~~~i~g~G~~~~~~ 890 (945)
++++.+|||||+|++++|+.|+|+|+||++++.|+|.||++|++++|+|+||++.+.||+++++|+++||+|+|||..++
T Consensus 237 ~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g~~~ri~g~G~p~~~~ 316 (371)
T PRK14287 237 VNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGKVKLKIPAGTQTGTSFRLRGKGVPNVHG 316 (371)
T ss_pred CCCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCCEEEEECCCccCCcEEEEcCCCccCCCC
Confidence 77678899999999999999999999999999999999999999999999999889999999999999999999998665
Q ss_pred CCCccEEEEEEEECCCCCCHHHHHHHHHHHHhhhcCCCCCCCcchhHHHHhhhcC
Q psy2902 891 SIPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRTKTVLNKVKNFF 945 (945)
Q Consensus 891 ~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (945)
+.+|||||+|+|.+|+.|+++|+++|++|++... ...+++..+++..+|+||
T Consensus 317 ~~~GDL~V~~~v~~P~~l~~~q~~ll~~l~~~~~---~~~~~~~~~~~~~~~~~~ 368 (371)
T PRK14287 317 RGQGDQHVQVRVVTPKNLTEKEKELMREFAGMSG---GRPDEQNDGFFAKVKRAF 368 (371)
T ss_pred CCCCCEEEEEEEEcCCCCCHHHHHHHHHHHhhhc---cccCcccccHHHHHHHHh
Confidence 6689999999999999999999999999986532 122455668999999886
No 25
>PRK14296 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.5e-56 Score=494.10 Aligned_cols=337 Identities=32% Similarity=0.596 Sum_probs=282.8
Q ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCC-CC
Q psy2902 575 SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMS-GS 653 (945)
Q Consensus 575 ~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~-g~ 653 (945)
...|++||.+..++++..+++|+. . + -.+.++|.++++||++|+|++||++||.+|+.+++.+.+ ++
T Consensus 14 ~~a~~~eik~ayrkla~~~HPD~n---------~-~--~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~~~~~ 81 (372)
T PRK14296 14 KTASEQEIRQAYRKLAKQYHPDLN---------K-S--PDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSSGFSS 81 (372)
T ss_pred CCCCHHHHHHHHHHHHHHHCcCCC---------C-C--chHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCCCcCc
Confidence 346889999999999999999973 1 1 124468899999999999999999999999887653211 11
Q ss_pred C-ccc----------ccccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCC
Q psy2902 654 S-ASA----------EASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSC 722 (945)
Q Consensus 654 ~-~~~----------~~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C 722 (945)
+ +++ ++.+|+|+|++|| |+++. ..+++.++.|+++.+.++|++++.|.++.+.+.+...|+.|
T Consensus 82 ~~~~~~~~~~~~~~~g~~~f~d~f~~~f----ggg~~--~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C 155 (372)
T PRK14296 82 NFGDFEDLFSNMGSSGFSSFTNIFSDFF----GSNKS--DYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKC 155 (372)
T ss_pred CCCccccccccccccccccchhhhhhhc----CCCcc--CCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCC
Confidence 1 110 0112344444444 32211 11234568899999999999999999999999999999999
Q ss_pred CccccccCcCcccCCCCCCCceEeEee--ce--eeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCC
Q psy2902 723 YGNGAKKGTSPISCFTCSGQGQVRMQQ--GF--FSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENN 798 (945)
Q Consensus 723 ~G~G~~~~~~~~~C~~C~G~G~~~~~~--~~--~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g 798 (945)
+|+|........+|+.|+|+|.+.+.+ |+ ++.+.+|+.|+|+|+++.++|..|.|.|.+.+.++++|.||+|+++|
T Consensus 156 ~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G 235 (372)
T PRK14296 156 FGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNIPKGIRPN 235 (372)
T ss_pred CCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCceEEEEEEEEEEEECCCCCCC
Confidence 999999888889999999999875433 43 35678999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCCCCCCCCCCccEEEEEEEecCCccccc-CCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCCCCCCcE
Q psy2902 799 MRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERD-GDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKI 877 (945)
Q Consensus 799 ~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~-g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~~~~g~~ 877 (945)
++|+|+|+|++.++++.+|||||+|++++|+.|+|+ |+||+++++|+|.|||+|+++.|+||||++.+.||++++||++
T Consensus 236 ~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tldG~~~v~ip~~t~~g~~ 315 (372)
T PRK14296 236 QQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGDIKYKLPKSINSNEL 315 (372)
T ss_pred CEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCCCCCEEEEECCccCCCcE
Confidence 999999999998766779999999999999999995 8999999999999999999999999999988899999999999
Q ss_pred EEECCCCcCCC-CCCCCccEEEEEEEECCCCCCHHHHHHHHHHHHhhhcCCCCCCCcc
Q psy2902 878 FRLRGKGIKNI-RSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRT 934 (945)
Q Consensus 878 ~~i~g~G~~~~-~~~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (945)
+||+|+|||.. +.+.+|||||+|+|.||+.||++|+++|++|++.. .++||.
T Consensus 316 ~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~~l~~~~-----~~~~~~ 368 (372)
T PRK14296 316 IIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKELIEQIYEQT-----SFNPEN 368 (372)
T ss_pred EEEcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHHHhhc-----CCCchh
Confidence 99999999954 33568999999999999999999999999998752 467775
No 26
>PRK14286 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.5e-56 Score=494.84 Aligned_cols=338 Identities=42% Similarity=0.768 Sum_probs=288.9
Q ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCCC
Q psy2902 575 SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSS 654 (945)
Q Consensus 575 ~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~~ 654 (945)
...|.+||.+..++++..+++|+.. .+ ..+.++|.++++||++|+|+++|++||.+|+.+++.+.++++
T Consensus 14 ~~a~~~eik~ayr~la~~~HPD~~~---------~~--~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~ 82 (372)
T PRK14286 14 KSANDEEIKSAYRKLAIKYHPDKNK---------GN--KESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGGFG 82 (372)
T ss_pred CCCCHHHHHHHHHHHHHHHCcCCCC---------Cc--hHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCCCC
Confidence 3468899999999999999999732 11 123458889999999999999999999999987753221111
Q ss_pred -ccc--c---cccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCccccc
Q psy2902 655 -ASA--E---ASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAK 728 (945)
Q Consensus 655 -~~~--~---~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~ 728 (945)
+++ + ..+|.|+|++||++.++++.......++.++.|++++|+++|++++.|+++.+.+.+.+.|+.|+|+|..
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~ffgg~~~~~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~ 162 (372)
T PRK14286 83 QGAYTDFSDIFGDFGDIFGDFFGGGRGGGSGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGAS 162 (372)
T ss_pred CCCcccccccccchhhHHHHhhCCCccCCCcccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcCCCcC
Confidence 110 0 1245566777776422111001111224568899999999999999999999999999999999999999
Q ss_pred cCcCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCC
Q psy2902 729 KGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGE 808 (945)
Q Consensus 729 ~~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~ 808 (945)
......+|+.|+|+|.+....|+++++.+|+.|+|.|+++.++|..|.|.|.+.+.++++|+||+|+++|++|+|+|+|+
T Consensus 163 ~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~ 242 (372)
T PRK14286 163 KGSSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPGVETGSRLKVSGEGE 242 (372)
T ss_pred CCCCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEecccCCCCCCCcEEecceEEEEEECCCCCCCCEEEECCccc
Confidence 88888899999999999888899899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCe-EEEEeCCCCCCCcEEEECCCCcCC
Q psy2902 809 PGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGK-AFFVIPEGTQSGKIFRLRGKGIKN 887 (945)
Q Consensus 809 ~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~-~~~~i~~~~~~g~~~~i~g~G~~~ 887 (945)
+.+++..+|||||+|++++|+.|+|+|+||+++++|+|.||++|+++.|+||||+ +.+.||+++++|+++||+|+|||.
T Consensus 243 ~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g~~~g~~~ri~G~G~P~ 322 (372)
T PRK14286 243 AGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEGTESGQVFRLKGHGMPY 322 (372)
T ss_pred cCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCCccCCCcEEEECCCCCCC
Confidence 9887677899999999999999999999999999999999999999999999997 678899999999999999999998
Q ss_pred CCCCCCccEEEEEEEECCCCCCHHHHHHHHHHHHhh
Q psy2902 888 IRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETSI 923 (945)
Q Consensus 888 ~~~~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~ 923 (945)
.+.+.+|||||+|+|.||+.||++|+++|++|++..
T Consensus 323 ~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~~~~ 358 (372)
T PRK14286 323 LGAYGKGDQHVIVKIEIPKKITRRQRELIEEFARES 358 (372)
T ss_pred CCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 665678999999999999999999999999999763
No 27
>PRK14276 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.9e-56 Score=496.24 Aligned_cols=352 Identities=40% Similarity=0.714 Sum_probs=296.4
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCC--C
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSG--S 653 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g--~ 653 (945)
..|.+||.+..++++...++|+. .. ..+.++|.++++||++|+|+++|++||.+|+.+++.+.++ +
T Consensus 15 ~a~~~eik~ayr~la~~~HpD~~---------~~---~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~~~~ 82 (380)
T PRK14276 15 DASQDEIKKAYRKLSKKYHPDIN---------KE---PGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGGAG 82 (380)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCC---------CC---cCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCCCCC
Confidence 57899999999999998999863 21 1234578899999999999999999999999887643211 0
Q ss_pred C-ccc----ccccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCccccc
Q psy2902 654 S-ASA----EASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAK 728 (945)
Q Consensus 654 ~-~~~----~~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~ 728 (945)
+ +++ +..+|.|+|++||++. +.......+.++.|+.+.|+++|++++.|+++.+.+.+...|+.|+|+|..
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~~fgg~----~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~ 158 (380)
T PRK14276 83 GFGGFDGSGGFGGFEDIFSSFFGGG----GARRNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAK 158 (380)
T ss_pred CCCCccccccccchhhHHHHHhCcc----ccccCcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCcccC
Confidence 1 111 1123556666666531 111111223568899999999999999999999999999999999999999
Q ss_pred cCcCcccCCCCCCCceEeEe----eceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEc
Q psy2902 729 KGTSPISCFTCSGQGQVRMQ----QGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRST 804 (945)
Q Consensus 729 ~~~~~~~C~~C~G~G~~~~~----~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~ 804 (945)
......+|+.|+|+|.+.+. .|+++.+.+|+.|+|.|+++.++|..|.|.|.+.+.++++|+||+|+++|++++|+
T Consensus 159 ~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~ 238 (380)
T PRK14276 159 PGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAGVETGQQIRLQ 238 (380)
T ss_pred CCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCceEEEEEEEEEEEeCCCccCCcEEEEe
Confidence 88888899999999987544 37777889999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCCCCCCcEEEECCCC
Q psy2902 805 GNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKG 884 (945)
Q Consensus 805 g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~~~~g~~~~i~g~G 884 (945)
|+|++.++++.+|||||+|++++|+.|+|+|+||+++++|+|.||++|++++|+|+||++.+.||+++++|++++|+|+|
T Consensus 239 G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tldg~i~v~ip~g~~~g~~~~i~g~G 318 (380)
T PRK14276 239 GQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHGDVELKIPAGTQTGKKFRLRGKG 318 (380)
T ss_pred ccccCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCCCcEEEEECCCCCCCCEEEECCCC
Confidence 99999877667899999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred cCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHHHHhhhcCCCCCCCcchhHHHHhhhcC
Q psy2902 885 IKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRTKTVLNKVKNFF 945 (945)
Q Consensus 885 ~~~~~~~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (945)
||..+.+.+|||||+|+|.||+.||++|+++|++|+....+ ...+++..+++.++|+||
T Consensus 319 ~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 377 (380)
T PRK14276 319 APKLRGGGNGDQHVTVNIVTPTKLNDAQKEALKAFAKASGE--KDVNPKKKGFFDKVKDAF 377 (380)
T ss_pred cCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhccc--cccCcccccHHHHHHHHh
Confidence 99866566899999999999999999999999999875321 012345568899999886
No 28
>PRK14284 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.4e-56 Score=496.02 Aligned_cols=356 Identities=38% Similarity=0.706 Sum_probs=297.0
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCC-CC
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSG-SS 654 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g-~~ 654 (945)
..|++||.+..++++..+++|+.. .+. .+.++|.++++||++|+|+++|++||++++.++..+.++ ++
T Consensus 12 ~a~~~eikkayr~la~~~HPD~~~---------~~~--~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~~~ 80 (391)
T PRK14284 12 TASPEEIKKAYRKLAVKYHPDKNP---------GDA--EAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGFGG 80 (391)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCC---------Cch--HHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCcCC
Confidence 478999999999999999998732 111 134578889999999999999999999998876422111 00
Q ss_pred ccc-------------cc---ccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeecccccc
Q psy2902 655 ASA-------------EA---SNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDI 718 (945)
Q Consensus 655 ~~~-------------~~---~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~ 718 (945)
+++ ++ ..+.|+|++||+++.+..+......++.++.+++++|+++|+++|.|+++.+.+.+...
T Consensus 81 ~g~~~~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~g~~~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~ 160 (391)
T PRK14284 81 AGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGMRGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGYKS 160 (391)
T ss_pred CCcCcccchhhhccccccccccccccchhhhccCccccccccccCCCcCCCCCeEEEEEEEHHHHhCCeeEEEEEeeecc
Confidence 110 00 01134555555432100000111122356889999999999999999999999999999
Q ss_pred CCCCCccccccCcCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCC
Q psy2902 719 CKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENN 798 (945)
Q Consensus 719 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g 798 (945)
|+.|+|+|........+|+.|+|+|.+....|+++++.+|+.|+|.|+++.++|..|.|.|.+.+.++++|+||||+++|
T Consensus 161 C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G 240 (391)
T PRK14284 161 CDACSGSGANSSQGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRSVHVHIPAGVDSG 240 (391)
T ss_pred CCCCcccccCCCCCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccCCcCCCCCCcceecceEEEEEEECCCCCCC
Confidence 99999999998888899999999999988889999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCC--CeEEEEeCCCCCCCc
Q psy2902 799 MRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLN--GKAFFVIPEGTQSGK 876 (945)
Q Consensus 799 ~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~--g~~~~~i~~~~~~g~ 876 (945)
++|+|+|+|++.++++.+|||||+|++++|+.|+|+|+||+++++|+|.||++|++++|+||| +.+.+.||+++++|+
T Consensus 241 ~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~i~v~Ip~g~~~g~ 320 (391)
T PRK14284 241 MRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCRLTIPEGIQSGT 320 (391)
T ss_pred CEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcEEEEEECCccCCCe
Confidence 999999999998877789999999999999999999999999999999999999999999999 567889999999999
Q ss_pred EEEECCCCcCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHHHHhhhcCCCCCCCcchhHHHHhhhcC
Q psy2902 877 IFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRTKTVLNKVKNFF 945 (945)
Q Consensus 877 ~~~i~g~G~~~~~~~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (945)
+++|+|+|||..+++.+|||||+|+|.+|+.|+++|+++|++|++...+ ..+++..++|.++++||
T Consensus 321 ~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~l~~~~~~---~~~~~~~~~~~~~~~~~ 386 (391)
T PRK14284 321 ILKVRGQGFPNVHGKGRGDLLVRISVETPQNLSEEQKELLRQFAATEKA---ENFPKKRSFLDKIKGFF 386 (391)
T ss_pred EEEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhccc---ccCcccccHHHHHHHHH
Confidence 9999999999866567899999999999999999999999999875321 22456679999999886
No 29
>PRK14297 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.7e-56 Score=495.73 Aligned_cols=354 Identities=39% Similarity=0.734 Sum_probs=298.1
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCC-CCC
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMS-GSS 654 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~-g~~ 654 (945)
..|.+||.+..++++...++|+.. ... .+.++|.++++||++|+|+++|++||++|+.+++.+++ +++
T Consensus 15 ~a~~~~ik~ayr~la~~~HPD~~~---------~~~--~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~~~~~~ 83 (380)
T PRK14297 15 GASDDEIKKAFRKLAIKYHPDKNK---------GNK--EAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGFGSG 83 (380)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCC---------CcH--HHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccCCCCCC
Confidence 468899999999999989998732 111 23457888999999999999999999999988763211 111
Q ss_pred c--ccc---cccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCcccccc
Q psy2902 655 A--SAE---ASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKK 729 (945)
Q Consensus 655 ~--~~~---~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~ 729 (945)
+ ++. ..+|.|+|++||++.+++.+ .+...+.++.|++++|+++|+++|.|+++.+.+.+...|+.|+|+|...
T Consensus 84 ~~~~~~~~~~~~~~d~f~~~fgg~~g~~~--~~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~ 161 (380)
T PRK14297 84 GFGGFDFSDMGGFGDIFDSFFGGGFGSSS--RRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKP 161 (380)
T ss_pred CCCCcCcccccchhHHHHHHhccCccccc--cccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCcccccccC
Confidence 1 111 02355777777765322211 1112235688999999999999999999999999999999999999998
Q ss_pred CcCcccCCCCCCCceEeEe----eceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcC
Q psy2902 730 GTSPISCFTCSGQGQVRMQ----QGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTG 805 (945)
Q Consensus 730 ~~~~~~C~~C~G~G~~~~~----~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g 805 (945)
.....+|+.|+|+|.+.+. .|+++.+.+|+.|+|+|.++.++|..|.|.|.+.+.++++|+||+|+++|++|+|.|
T Consensus 162 ~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~I~l~g 241 (380)
T PRK14297 162 GTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAGVDTGNVIPLRG 241 (380)
T ss_pred CCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCCCCeEEEeEeEEEEEeCCCCCCCcEEEEec
Confidence 8888999999999987543 367788999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCCCCCCcEEEECCCCc
Q psy2902 806 NGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGI 885 (945)
Q Consensus 806 ~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~~~~g~~~~i~g~G~ 885 (945)
+|++.+.++.+|||||+|++++|+.|+|+|+||+++++|+|.|||+|++++|+|+||++.+.||+++++|+++||+|+||
T Consensus 242 ~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~~~v~ip~g~~~g~~~ri~g~G~ 321 (380)
T PRK14297 242 QGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGEVKYEVPAGTQPGTVFRLKGKGV 321 (380)
T ss_pred CccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCCcEEEEECCCcCCCCEEEEcCCCc
Confidence 99997766778999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred CCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHHHHhhhcCCCCCC-CcchhHHHHhhhcC
Q psy2902 886 KNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHN-PRTKTVLNKVKNFF 945 (945)
Q Consensus 886 ~~~~~~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 945 (945)
|..+++.+|||||+|+|.||+.||++|+++|++++..... ..| .+..++|+++|+||
T Consensus 322 p~~~~~~~GDL~v~~~v~~P~~ls~~q~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 379 (380)
T PRK14297 322 PRVNSTGRGNQYVTVIVDIPKKLNSKQKEALTMFMEASGE---TVDGKEKKTIFEKIKKGF 379 (380)
T ss_pred CCCCCCCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHhcCc---ccCccccchHHHHHHHhh
Confidence 9766567899999999999999999999999999986421 111 24568999999997
No 30
>PRK10767 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.8e-56 Score=492.84 Aligned_cols=357 Identities=54% Similarity=0.968 Sum_probs=303.1
Q ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCCC
Q psy2902 575 SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSS 654 (945)
Q Consensus 575 ~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~~ 654 (945)
...|.+||.+..++++...++|+. .... .+.++|.++++||++|+++++|+.||.+++.++..+.++++
T Consensus 14 ~~as~~eik~ayr~la~~~HPD~~---------~~~~--~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~~~ 82 (371)
T PRK10767 14 RNASEDEIKKAYRKLAMKYHPDRN---------PGDK--EAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGGGG 82 (371)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCC---------CCcH--HHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCCCC
Confidence 347889999999999999999963 1111 13357888999999999999999999999887754321111
Q ss_pred cccccccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCccccccCcCcc
Q psy2902 655 ASAEASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPI 734 (945)
Q Consensus 655 ~~~~~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~~~~ 734 (945)
.+ +..+|.|+|++||+++||++++. ..+++.++.|++++|+++|+++|.|.++.+.+.+...|+.|+|+|........
T Consensus 83 ~~-~~~~~~~~f~~~f~~~fgg~~~~-~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~ 160 (371)
T PRK10767 83 FG-GGGGFGDIFGDIFGDIFGGGRGG-GRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPK 160 (371)
T ss_pred CC-CccccccchhhhhhhhccCCccc-cCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCc
Confidence 11 11234555666666665532111 11234578899999999999999999999999999999999999999888888
Q ss_pred cCCCCCCCceEeEeeceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCCCCCCCC
Q psy2902 735 SCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLNGG 814 (945)
Q Consensus 735 ~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~ 814 (945)
+|+.|+|+|.+....|+++++.+|+.|.|+|+++.++|..|.|.|.+.+.++++|.||+|+++|++|+|+|+|++..+++
T Consensus 161 ~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~ 240 (371)
T PRK10767 161 TCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRLSGEGEAGERGG 240 (371)
T ss_pred cCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECCCCCCCCCCCceEeeeeeEEEecCCCCCCCcEEEEecCccCCCCCC
Confidence 99999999999888899899999999999999999999999999999999999999999999999999999999977667
Q ss_pred CCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCCCCCCcEEEECCCCcCCCCCCCCc
Q psy2902 815 SNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRSSIPG 894 (945)
Q Consensus 815 ~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~~~~g~~~~i~g~G~~~~~~~~~G 894 (945)
.+|||||+|++++|+.|+|+|+||++++.|+|.+||+|++++|+||||.+.+.||+++++|++++|+|+|||..+++.+|
T Consensus 241 ~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~G 320 (371)
T PRK10767 241 PAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRVKLKIPEGTQTGKLFRLRGKGVKSVRSGARG 320 (371)
T ss_pred CCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCCcEEEEeCCCCCCCCEEEECCCCcCCCCCCCCC
Confidence 89999999999999999999999999999999999999999999999988899999999999999999999986656789
Q ss_pred cEEEEEEEECCCCCCHHHHHHHHHHHHhhhcCCCCCCCcchhHHHHhhhcC
Q psy2902 895 DLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRTKTVLNKVKNFF 945 (945)
Q Consensus 895 dl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (945)
||||+|+|.+|+.|+++|+++|+++++.+. ....++|+...++.++++||
T Consensus 321 DL~v~~~v~~P~~l~~~~~~ll~~l~~~~~-~~~~~~~~~~~~~~~~~~~~ 370 (371)
T PRK10767 321 DLYCQVVVETPVNLTKRQKELLEEFEESFE-SGEKHSPKSKGFFDKVKDFF 370 (371)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHHHhhhc-cccccCcccccHHHHHHHhh
Confidence 999999999999999999999999997521 12235777778888888886
No 31
>PRK14280 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.7e-56 Score=491.65 Aligned_cols=351 Identities=42% Similarity=0.761 Sum_probs=295.7
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCCC-
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSS- 654 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~~- 654 (945)
..|.+||.+..++++...++|+.. . -.+.++|.++++||++|+|+++|++||.+|+.+++.++++++
T Consensus 15 ~a~~~eik~ayr~la~~~HpD~~~---------~---~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~~ 82 (376)
T PRK14280 15 SASKDEIKKAYRKLSKKYHPDINK---------E---EGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGGGF 82 (376)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCC---------C---ccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCCCC
Confidence 468899999999999999999631 1 123457888999999999999999999999987764321111
Q ss_pred c--ccc-cccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCccccccCc
Q psy2902 655 A--SAE-ASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGT 731 (945)
Q Consensus 655 ~--~~~-~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~ 731 (945)
+ ++. +.+|.|+|++||++. + + +.....+.++.|+.++|+++|+++|.|+++.+.+.+...|+.|+|+|.....
T Consensus 83 ~~~~~~~~~~~~d~f~~~fgg~--~-~-~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~ 158 (376)
T PRK14280 83 GGGDFGGGFGFEDIFSSFFGGG--G-R-RRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGT 158 (376)
T ss_pred CCCCccccccchhhHHHHhCCc--c-c-cCcccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCcccCCCC
Confidence 0 101 114556676666531 1 1 1111223468899999999999999999999999999999999999998888
Q ss_pred CcccCCCCCCCceEeEe----eceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCC
Q psy2902 732 SPISCFTCSGQGQVRMQ----QGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNG 807 (945)
Q Consensus 732 ~~~~C~~C~G~G~~~~~----~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G 807 (945)
...+|+.|+|+|.+.+. .|+++.+.+|+.|+|+|+++.++|..|.|.|.+.+.++++|.||+|+++|++|+|+|+|
T Consensus 159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~i~l~G~G 238 (376)
T PRK14280 159 SKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGVDNGQQIRVSGEG 238 (376)
T ss_pred CCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceEEEEEEEEEEEeCCCCcCCcEEEEcccc
Confidence 88899999999987543 36777888999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCCCCCCcEEEECCCCcCC
Q psy2902 808 EPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKN 887 (945)
Q Consensus 808 ~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~~~~g~~~~i~g~G~~~ 887 (945)
++.++++.+|||||+|++++|+.|+|+|+||+++++|+|.||++|+++.|+||||++.+.||+++++|++++|+|+|||.
T Consensus 239 ~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~g~~~~i~g~G~p~ 318 (376)
T PRK14280 239 EPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGKVKLKIPAGTQTGTQFRLKGKGVPN 318 (376)
T ss_pred cCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCceEEEEECCCCCCCcEEEEcCCCCCC
Confidence 99877678899999999999999999999999999999999999999999999999888999999999999999999998
Q ss_pred CCCCCCccEEEEEEEECCCCCCHHHHHHHHHHHHhhhcCCCCCCCcchhHHHHhhhcC
Q psy2902 888 IRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRTKTVLNKVKNFF 945 (945)
Q Consensus 888 ~~~~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (945)
..++.+|||||+|+|.||+.||++|+++|++|++... ...+++..+++..+++||
T Consensus 319 ~~~~~~GDL~v~~~v~~P~~Ls~~q~~~l~~l~~~~~---~~~~~~~~~~~~~~~~~~ 373 (376)
T PRK14280 319 VRGYGQGDQYVVVRVVTPTKLTDRQKELLREFAELSG---EEIDEQPSSFFDKAKRAF 373 (376)
T ss_pred CCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhcc---cccCcccccHHHHHHHHh
Confidence 6555789999999999999999999999999986532 112344458888888886
No 32
>PRK14301 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.7e-56 Score=491.87 Aligned_cols=346 Identities=44% Similarity=0.791 Sum_probs=292.6
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCCCc
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSA 655 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~~~ 655 (945)
..|.+||.+..++++...++|+.. .. ..+.++|.++++||++|+|+++|++||.+++.|+++++++++.
T Consensus 15 ~a~~~~ik~ayr~la~~~HPD~~~---------~~--~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~~~~g~ 83 (373)
T PRK14301 15 DASEDEIKKAYRKLALQYHPDRNP---------DN--PEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNGGFGGF 83 (373)
T ss_pred CCCHHHHHHHHHHHHHHhCCCcCC---------CC--hHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCCCCCCc
Confidence 578899999999999999999732 11 1234578889999999999999999999998877532111110
Q ss_pred ccc---cccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCccccccCcC
Q psy2902 656 SAE---ASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTS 732 (945)
Q Consensus 656 ~~~---~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~~ 732 (945)
... ++.|.|+|++||++. +++ ..+...+.++.|+++.|+++|++++.|+++.+.+.+...|+.|+|+|......
T Consensus 84 ~~~~~~~~~f~d~f~~~fg~g--~~~-~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~ 160 (373)
T PRK14301 84 SSAEDIFSHFSDIFGDLFGFS--GGG-SRRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTS 160 (373)
T ss_pred ccccccccchHHHHHHHhhcc--Ccc-cccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcccCCCCC
Confidence 000 123344555555311 111 01112245688999999999999999999999999999999999999998888
Q ss_pred cccCCCCCCCceEeEeeceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCCCCCC
Q psy2902 733 PISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLN 812 (945)
Q Consensus 733 ~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~~~~~ 812 (945)
..+|+.|+|+|.+....|+++.+.+|+.|+|.|+++.++|..|.|.|.+.+.++++|+||+|+++|++|+|+|+|++.++
T Consensus 161 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~ 240 (373)
T PRK14301 161 PETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLRLRGEGEPGVH 240 (373)
T ss_pred CcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecCCCCCCCCCCceeccceEEEEEeCCCCcCCCEEEEeccccCCCC
Confidence 88999999999998888988899999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCCCCCCcEEEECCCCcCCCCCCC
Q psy2902 813 GGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRSSI 892 (945)
Q Consensus 813 ~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~~~~g~~~~i~g~G~~~~~~~~ 892 (945)
++.+|||||+|++++|+.|+|+|+||+++++|+|.+|++|++++|+||||++.+.||+++++|++++|+|+|||..+.+.
T Consensus 241 ~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~ 320 (373)
T PRK14301 241 GGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDPVTLDIPKGTQSGEVFRLRGKGLPYLGSSQ 320 (373)
T ss_pred CCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCccEEEEECCCcCCCcEEEEcCCCCCCCCCCC
Confidence 67789999999999999999999999999999999999999999999999988899999999999999999999866667
Q ss_pred CccEEEEEEEECCCCCCHHHHHHHHHHHHhhhcCCCCCCCcchhHHHHhhhcC
Q psy2902 893 PGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRTKTVLNKVKNFF 945 (945)
Q Consensus 893 ~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (945)
+|||||+|+|.+|+.|+++|+++|++|+... ..+| ++++++||
T Consensus 321 ~GDL~I~~~V~~P~~l~~~q~~~l~~l~~~~-----~~~~-----~~~~~~~~ 363 (373)
T PRK14301 321 KGDLLVEVSVVTPTKLTKRQEELLREFEALE-----EEKP-----LEKVKKFF 363 (373)
T ss_pred CCCEEEEEEEECCCCCCHHHHHHHHHHHhhc-----ccCH-----HHHHHHHH
Confidence 8999999999999999999999999999763 2234 46777775
No 33
>PRK14278 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.5e-56 Score=489.88 Aligned_cols=356 Identities=33% Similarity=0.612 Sum_probs=293.6
Q ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCCC
Q psy2902 575 SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSS 654 (945)
Q Consensus 575 ~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~~ 654 (945)
...|.+||.+..++++..+++|+... ..+.++|.++++||++|+|+++|++||.+|+.+...+..+++
T Consensus 13 ~~a~~~eik~ayr~la~~~hpD~~~~------------~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~g 80 (378)
T PRK14278 13 RNASDAEIKRAYRKLARELHPDVNPD------------EEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGGG 80 (378)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCc------------HHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCCC
Confidence 35789999999999999999987321 123357888999999999999999999998753321111111
Q ss_pred cccccccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCccccccCcCcc
Q psy2902 655 ASAEASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPI 734 (945)
Q Consensus 655 ~~~~~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~~~~ 734 (945)
+++++.+|.|+|++||+++ + .+ +.....+.++.|+++.|+++|++++.|.++.+.+.+...|+.|+|+|........
T Consensus 81 ~~~~f~~~~d~f~~ffgg~-g-~~-~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~ 157 (378)
T PRK14278 81 FGGGFGGLGDVFEAFFGGG-A-AS-RGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPV 157 (378)
T ss_pred CCcCcCchhHHHHHHhCCC-C-CC-CCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCce
Confidence 0111123556777777532 1 11 1111123468899999999999999999999999999999999999999888888
Q ss_pred cCCCCCCCceEeEe----eceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCCCC
Q psy2902 735 SCFTCSGQGQVRMQ----QGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPG 810 (945)
Q Consensus 735 ~C~~C~G~G~~~~~----~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~~~ 810 (945)
+|+.|+|+|.+.+. .|+++.+.+|+.|+|.|+++.++|..|.|.|.+.+.++++|.||||+++|++|+|+|+|++.
T Consensus 158 ~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~ 237 (378)
T PRK14278 158 TCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKIPAGVGDGMRIRLAAQGEVG 237 (378)
T ss_pred ecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCceeEecceEEEEEECCCCCCCcEEEEccCcCCC
Confidence 99999999987543 36677788999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecC-CCeEEEEeCCCCCCCcEEEECCCCcCCCC
Q psy2902 811 LNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTL-NGKAFFVIPEGTQSGKIFRLRGKGIKNIR 889 (945)
Q Consensus 811 ~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l-~g~~~~~i~~~~~~g~~~~i~g~G~~~~~ 889 (945)
++++.+|||||+|++++|+.|+|+|+||+++++|+|.+|++|+++.|+|| +|.+.+.||+++++|++++|+|+|||..+
T Consensus 238 ~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g~~~g~~lrl~g~G~p~~~ 317 (378)
T PRK14278 238 PGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPGTQPGSVITLRGRGMPHLR 317 (378)
T ss_pred CCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCCCcCCCcEEEECCCCCCCCC
Confidence 87777899999999999999999999999999999999999999999999 56678899999999999999999999765
Q ss_pred CCCCccEEEEEEEECCCCCCHHHHHHHHHHHHhhhcCCC--CCCCcchhHHHHhhhcC
Q psy2902 890 SSIPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGF--KHNPRTKTVLNKVKNFF 945 (945)
Q Consensus 890 ~~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 945 (945)
.+.+|||||+|+|.||+.||++|+++|++++.......+ ..+++..++++++++||
T Consensus 318 ~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (378)
T PRK14278 318 SGGRGDLHAHVEVVVPTRLDHEDIELLRELKALRGREVAEVRSTHAQGGLFSRLRETF 375 (378)
T ss_pred CCCCCCEEEEEEEEcCCCCCHHHHHHHHHHHhhcCccccccccCcccccHHHHHHHHh
Confidence 567899999999999999999999999999864211100 11335568999999887
No 34
>PRK14300 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.1e-55 Score=486.45 Aligned_cols=354 Identities=40% Similarity=0.792 Sum_probs=299.2
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCC--CCC
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNM--SGS 653 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~--~g~ 653 (945)
..|.+||.+..++++..+++|+. .. -.+.++|.++++||++|+++++|++||.+|+.+++.+. +++
T Consensus 14 ~as~~eik~ayr~la~~~HPD~~---------~~---~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~~ 81 (372)
T PRK14300 14 TASQADLKKAYLKLAKQYHPDTT---------DA---KDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGGG 81 (372)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCC---------CC---cCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccccCCC
Confidence 46789999999999998898862 11 11334788899999999999999999999988775321 111
Q ss_pred Cc-ccccccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCccccccCcC
Q psy2902 654 SA-SAEASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTS 732 (945)
Q Consensus 654 ~~-~~~~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~~ 732 (945)
++ +++..+|+++|++||+++|++++.+.....+.++.++++.|.++|++++.|+++.+.+.+...|+.|+|+|......
T Consensus 82 g~~~~~~~~~~~~f~~~f~~~~gg~~~~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~ 161 (372)
T PRK14300 82 GNHGGFHPDINDIFGDFFSDFMGGSRRSRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGET 161 (372)
T ss_pred CCCCccccchhhhHHHHHHhhcCCCCCCCCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCCC
Confidence 10 11112455777778877655321111111124678999999999999999999999999999999999999998888
Q ss_pred cccCCCCCCCceEeEeeceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCCCCCC
Q psy2902 733 PISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLN 812 (945)
Q Consensus 733 ~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~~~~~ 812 (945)
..+|+.|+|+|.+.+..|+++++.+|+.|+|.|+++.++|..|.|.|.+.+.++++|.||+|+++|++|+|+|+|++..+
T Consensus 162 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~ 241 (372)
T PRK14300 162 VTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHTGEGEAGIR 241 (372)
T ss_pred CccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeCCCCCCCCCceEEEeeEEEEEEECCCCCCCcEEEEeccccCCCC
Confidence 89999999999998888999999999999999999999999999999999999999999999999999999999999777
Q ss_pred CCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCC-eEEEEeCCCCCCCcEEEECCCCcCCCCCC
Q psy2902 813 GGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNG-KAFFVIPEGTQSGKIFRLRGKGIKNIRSS 891 (945)
Q Consensus 813 ~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g-~~~~~i~~~~~~g~~~~i~g~G~~~~~~~ 891 (945)
++.+|||||+|++++|+.|+|+|+||+++++|+|.+|++|+++.|+|+|| .+.+.||+++++|+++||+|+|||..++.
T Consensus 242 ~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g~~~g~~iri~g~G~p~~~~~ 321 (372)
T PRK14300 242 GGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAGTQNGDQLRLRSKGMSKMRST 321 (372)
T ss_pred CCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCccCCCcEEEECCCCCCCCCCC
Confidence 77899999999999999999999999999999999999999999999998 67788999999999999999999976556
Q ss_pred CCccEEEEEEEECCCCCCHHHHHHHHHHHHhhhcCCCCCCCcchhHHHHhhhcC
Q psy2902 892 IPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRTKTVLNKVKNFF 945 (945)
Q Consensus 892 ~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (945)
.+|||||+|+|.||+.||++|+++|++|++.-.. .. .+...+++++|+||
T Consensus 322 ~~GDL~V~~~v~~P~~ls~~qk~~l~~l~~~~~~---~~-~~~~~~~~~~~~~~ 371 (372)
T PRK14300 322 IRGDMLTHIHVEVPKNLSKRQRELLEEFKKESIN---EK-ENDGSFFNKMKSLW 371 (372)
T ss_pred CCCCEEEEEEEECCCCCCHHHHHHHHHHHhhccc---cc-cccccHHHHHHHhc
Confidence 7899999999999999999999999999864210 11 13447889999987
No 35
>PRK14279 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.8e-55 Score=487.30 Aligned_cols=335 Identities=36% Similarity=0.684 Sum_probs=283.1
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccc----cCCCCC-
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHA----GIDPNM- 650 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~----g~~~~~- 650 (945)
..|++||.+..++++..+++|+.. .+ ..+.++|.++++||++|+|++||++||.+++. ++.+..
T Consensus 20 ~a~~~eik~ayr~la~~~HPD~~~---------~~--~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~~~~ 88 (392)
T PRK14279 20 DASAEEIKKAYRKLARELHPDANP---------GD--PAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGGRRF 88 (392)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCC---------CC--hHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhccccccccccc
Confidence 467899999999999999999732 11 12345788899999999999999999999864 222110
Q ss_pred -C-CCCccc------ccccccccc-----------cccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEe
Q psy2902 651 -S-GSSASA------EASNFADAF-----------GDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSI 711 (945)
Q Consensus 651 -~-g~~~~~------~~~~f~d~f-----------~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~ 711 (945)
+ ++.+++ ...+|.++| +++|++||++++...+...+.++.|++++|+++|++++.|+++.+
T Consensus 89 ~~~~~~~g~~~~~~~~~~d~~~~f~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~~~~g~di~~~l~ltLee~~~G~~~~v 168 (392)
T PRK14279 89 DGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGGLFNRGGGSARPSRPRRGNDLETETTLDFVEAAKGVTMPL 168 (392)
T ss_pred cCCCCCCCccccccccCcChhhhhcccccccccchhhhhhhhhcCCCcccccCCCCCCCCeEEEEEEEHHHHhCCeEEEE
Confidence 0 000010 012233333 245555554221111112345688999999999999999999999
Q ss_pred eccccccCCCCCccccccCcCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEe
Q psy2902 712 RVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKI 791 (945)
Q Consensus 712 ~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~i 791 (945)
.+.+...|+.|+|+|........+|+.|+|+|.+....|+++++.+|+.|+|+|+++.++|..|.|.|.+.+.++++|.|
T Consensus 169 ~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~~~~~V~I 248 (392)
T PRK14279 169 RLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIEDPCEECKGTGVTTRTRTINVRI 248 (392)
T ss_pred eeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeCCcCCCCCCCeEEEEeeeeEEEe
Confidence 99999999999999999888889999999999998888888899999999999999999999999999999999999999
Q ss_pred ecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCC
Q psy2902 792 PAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEG 871 (945)
Q Consensus 792 p~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~ 871 (945)
|||+++|++|+|+|+|++.++++.+|||||+|++++|+.|+|+|+||+++++|+|.+|++|++++|+|+||++.+.||++
T Consensus 249 p~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~i~v~Ip~g 328 (392)
T PRK14279 249 PPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPVGVKVPAG 328 (392)
T ss_pred CCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCceEEEEECCC
Confidence 99999999999999999988777789999999999999999999999999999999999999999999999988999999
Q ss_pred CCCCcEEEECCCCcCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHHHHh
Q psy2902 872 TQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETS 922 (945)
Q Consensus 872 ~~~g~~~~i~g~G~~~~~~~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~ 922 (945)
+++|+++||+|+|||.. .+.+|||||+|+|.||+.||++|+++|++|+..
T Consensus 329 ~~~g~~iri~g~G~p~~-~~~~GDL~I~~~v~~P~~Ls~~q~~~l~~~~~~ 378 (392)
T PRK14279 329 TADGRILRVRGRGVPKR-SGGAGDLLVTVKVAVPPNLDGAAAEALEAYAEA 378 (392)
T ss_pred CCCCCEEEECCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 99999999999999973 456899999999999999999999999999875
No 36
>PRK14294 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.5e-55 Score=484.31 Aligned_cols=347 Identities=43% Similarity=0.791 Sum_probs=294.7
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCCCc
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSA 655 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~~~ 655 (945)
..|.+||.+..++++..+++|+.. ... .+.+.|.++++||++|+|+++|++||.+|+.|++++..++.+
T Consensus 15 ~a~~~eik~ayr~la~~~HPD~~~---------~~~--~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~~~~~ 83 (366)
T PRK14294 15 DASEEEIKKSYRKLAMKYHPDRNP---------GDK--EAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGFSGFS 83 (366)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCC---------Cch--HHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCCCCcC
Confidence 478899999999999999999732 111 123467788999999999999999999999887632111111
Q ss_pred cc--ccccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCccccccCcCc
Q psy2902 656 SA--EASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSP 733 (945)
Q Consensus 656 ~~--~~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~~~ 733 (945)
++ .+++|+|+|++||+. ++++.......+.++.|++++|+++|+++|.|.++.+.+.+...|+.|+|+|.......
T Consensus 84 ~~~~~~~~~~d~f~~~fg~--g~~~~~~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~ 161 (366)
T PRK14294 84 GFDDIFSSFGDIFEDFFGF--GGGRRGRSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSP 161 (366)
T ss_pred ccccchhhhhhhHHHhhcc--CCCcCCcccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCCCc
Confidence 11 012355666666651 11110011112356889999999999999999999999999999999999999988888
Q ss_pred ccCCCCCCCceEeEeeceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCCCCCCC
Q psy2902 734 ISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLNG 813 (945)
Q Consensus 734 ~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~~~~~~ 813 (945)
.+|+.|+|+|.+....|+++++.+|+.|+|+|+++.++|..|.|.|.+.+.++++|.||+|+++|++|+|+|+|++.+++
T Consensus 162 ~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~ 241 (366)
T PRK14294 162 TTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLRGEGEAGVRG 241 (366)
T ss_pred ccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecCcCCCCCCCceEeecceeEEEecCCCCcCCcEEEEccCccCCCCC
Confidence 99999999999887778888999999999999999999999999999999999999999999999999999999998777
Q ss_pred CCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCCCCCCcEEEECCCCcCCCCCCCC
Q psy2902 814 GSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRSSIP 893 (945)
Q Consensus 814 ~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~~~~g~~~~i~g~G~~~~~~~~~ 893 (945)
+.+|||||+|++++|+.|+|+|+||+++++|+|.|||+|++++|+||||+..+.||+++++|++++|+|+|||..+.+.+
T Consensus 242 ~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~iri~G~G~p~~~~~~~ 321 (366)
T PRK14294 242 GPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGERELKIPKGTQPGDIFRFKGKGIPSLRGGGR 321 (366)
T ss_pred CCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCcEEEEECCCcCCCCEEEECCCCCCCCCCCCC
Confidence 78999999999999999999999999999999999999999999999999889999999999999999999997665568
Q ss_pred ccEEEEEEEECCCCCCHHHHHHHHHHHHhhhcCCCCCCCcchhHHHHhhhcC
Q psy2902 894 GDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRTKTVLNKVKNFF 945 (945)
Q Consensus 894 Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (945)
|||||+|+|.+|+.|+++|+++|++|++... + ..++++++||
T Consensus 322 GDL~V~~~v~~P~~l~~~q~~ll~~~~~~~~------~----~~~~~~~~~~ 363 (366)
T PRK14294 322 GDQIIEVEVKVPTRLTKKQEELLTEFARLES------E----KIGNKLRNLF 363 (366)
T ss_pred CCEEEEEEEECCCCCCHHHHHHHHHHHHhcc------c----cHHHHHHHHh
Confidence 9999999999999999999999999997631 1 4468888887
No 37
>PRK14285 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.5e-55 Score=483.86 Aligned_cols=334 Identities=38% Similarity=0.705 Sum_probs=286.7
Q ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCC--C
Q psy2902 575 SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMS--G 652 (945)
Q Consensus 575 ~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~--g 652 (945)
...|.+||.+..+++....++|+.. ... .+.++|.++++||++|+|+++|++||.+++.+++++++ +
T Consensus 13 ~~a~~~eIk~ayr~la~~~HPD~~~---------~~~--~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~~~~~ 81 (365)
T PRK14285 13 KGASKDEIKKAYRKIAIKYHPDKNK---------GNK--EAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGGFEG 81 (365)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCC---------CCH--HHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCCCccc
Confidence 3578999999999999999999732 111 13357889999999999999999999999887753321 1
Q ss_pred CCcccc-----cccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCcccc
Q psy2902 653 SSASAE-----ASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGA 727 (945)
Q Consensus 653 ~~~~~~-----~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~ 727 (945)
..+++. ..+|+|+|++||++..+ +.+.+.+.++.|++++++++|++++.|.++.+.+.+...|+.|+|+|.
T Consensus 82 ~~~g~~~~~~~~~~~~d~f~~~fgg~~~----~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~ 157 (365)
T PRK14285 82 FSGGFSGFSDIFEDFGDIFDSFFTGNRG----QDKNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKS 157 (365)
T ss_pred cCCCccccccccccHHHHHHHhhcCCcC----CCCCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCccc
Confidence 101110 12344555555543111 111122356889999999999999999999999999999999999999
Q ss_pred ccCcCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCC
Q psy2902 728 KKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNG 807 (945)
Q Consensus 728 ~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G 807 (945)
.......+|+.|+|+|.+.+.+|+++++.+|+.|.|.|+++.++|..|.|.|.+.+.++++|+||||+++|++|+|+|+|
T Consensus 158 ~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G 237 (365)
T PRK14285 158 EKGTSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAGIDDNQQIKMRGKG 237 (365)
T ss_pred CCCCCCccCCCccCceeEEecCceeEEeeecCCCCCcccccCCCCCCCCCCCEEeccEEEEEEECCCCCCCCEEEEeecc
Confidence 98888889999999999988889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCe-EEEEeCCCCCCCcEEEECCCCcC
Q psy2902 808 EPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGK-AFFVIPEGTQSGKIFRLRGKGIK 886 (945)
Q Consensus 808 ~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~-~~~~i~~~~~~g~~~~i~g~G~~ 886 (945)
++.++++.+|||||+|++++|+.|+|+|+||+++++|+|.|||+|++++|+||||+ +.+.||+++++|++++|+|+|||
T Consensus 238 ~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~g~~~g~~irl~GkG~p 317 (365)
T PRK14285 238 SVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKGTENDEQIIIKNEGMP 317 (365)
T ss_pred ccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCCCcCCCcEEEECCCCcc
Confidence 99887677899999999999999999999999999999999999999999999995 67889999999999999999999
Q ss_pred CCCCCCCccEEEEEEEECCCCCCHHHHHHHHHHHHhh
Q psy2902 887 NIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETSI 923 (945)
Q Consensus 887 ~~~~~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~ 923 (945)
..+...+|||||+|+|.+|+.|+++|+++|++|+...
T Consensus 318 ~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l~~l~~~~ 354 (365)
T PRK14285 318 ILHTEKFGNLILIIKIKTPKNLNSNAIKLLENLSKEL 354 (365)
T ss_pred CCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 7665567999999999999999999999999999874
No 38
>PRK14295 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.1e-55 Score=483.15 Aligned_cols=349 Identities=36% Similarity=0.721 Sum_probs=294.1
Q ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHH----hccccCCCCC
Q psy2902 575 SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQ----YGHAGIDPNM 650 (945)
Q Consensus 575 ~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~----~~~~g~~~~~ 650 (945)
...|.+||.+..++++..+++|+.. .. ..+.++|.++++||++|+|+++|++||+ +|+.|+.++.
T Consensus 19 ~~a~~~eik~ayr~la~~~HPD~~~---------~~--~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~~ 87 (389)
T PRK14295 19 KDATEAEIKKAYRKLAREYHPDANK---------GD--AKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPGP 87 (389)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCcCC---------Cc--hhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccCC
Confidence 3578999999999999999999732 11 1234578889999999999999999998 8887775321
Q ss_pred CCC-Ccccc---------------cccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeecc
Q psy2902 651 SGS-SASAE---------------ASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVP 714 (945)
Q Consensus 651 ~g~-~~~~~---------------~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~ 714 (945)
+++ ++++. +.+|++.|+++|+++|++++ + ...+.++.|++++|+++|+++|.|+++.+.+.
T Consensus 88 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~f~d~f~~~fg~~~-~--~~~~~~g~di~~~l~lsLee~~~G~~k~i~~~ 164 (389)
T PRK14295 88 GGGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLFNRGG-R--RTQPRRGADVESEVTLSFTEAIDGATVPLRLT 164 (389)
T ss_pred CCCCCCCCCcccccccccccccccccccccchhhhhcccccCCC-C--CCCCCCCCCEEEEEEEEHHHHhCCceEEEEee
Confidence 100 00000 00111224455555554321 1 12234688999999999999999999999999
Q ss_pred ccccCCCCCccccccCcCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecC
Q psy2902 715 SWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAG 794 (945)
Q Consensus 715 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G 794 (945)
+...|+.|+|+|........+|+.|+|+|.+....|+++++.+|+.|+|+|.++.++|..|.|.|.+.+.++++|+||+|
T Consensus 165 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G 244 (389)
T PRK14295 165 SQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQVRIPAG 244 (389)
T ss_pred ccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEeccCCCCCCCCceEeeeeEEEEEeCCC
Confidence 99999999999999888889999999999988777888889999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCC-eEEEEeCCCCC
Q psy2902 795 IENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNG-KAFFVIPEGTQ 873 (945)
Q Consensus 795 ~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g-~~~~~i~~~~~ 873 (945)
+++|++|+|+|+|++.++++.+|||||+|++++|+.|+|+|+||+++++|+|.+|++|++++|+|||| .+.+.||++++
T Consensus 245 ~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~~v~ip~g~~ 324 (389)
T PRK14295 245 VSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPVTVKLPPGTP 324 (389)
T ss_pred CCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEEEEEECCccC
Confidence 99999999999999987767789999999999999999999999999999999999999999999999 57888999999
Q ss_pred CCcEEEECCCCcCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHHHHhhhcCCCCCCCcchhHHHHhhh
Q psy2902 874 SGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRTKTVLNKVKN 943 (945)
Q Consensus 874 ~g~~~~i~g~G~~~~~~~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 943 (945)
+|+++||+|+|||.. ++.+|||||+|+|.||+.||++|+++|++|+.... .++|+. +++.++|.
T Consensus 325 ~g~~iri~G~G~p~~-~~~~GDL~i~~~v~~P~~Ls~~qk~~l~~l~~~~~----~~~~~~-~~~~~~~~ 388 (389)
T PRK14295 325 NGRVLRVRGKGAVRK-DGTRGDLLVTVEVAVPKDLSGKAREALEAFREATA----DEDPRA-ELFQAAKG 388 (389)
T ss_pred CCcEEEECCCCcCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhcc----Ccchhh-HHHHHhhc
Confidence 999999999999974 45689999999999999999999999999998642 256774 88888875
No 39
>PRK14281 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.3e-55 Score=486.09 Aligned_cols=358 Identities=34% Similarity=0.652 Sum_probs=293.1
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCC--CC
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMS--GS 653 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~--g~ 653 (945)
..|.+||.+..++++..+++|+.. ... .+.++|.++++||++|+|+++|++||.+++.+++++.. ++
T Consensus 14 ~a~~~eikkayr~la~~~HPD~~~---------~~~--~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~~~ 82 (397)
T PRK14281 14 SADKDEIKKAYRKLALKYHPDKNP---------DNK--EAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGGG 82 (397)
T ss_pred CCCHHHHHHHHHHHHHHHCCCcCC---------Cch--HHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccCCC
Confidence 468899999999999999999732 111 12357888999999999999999999999887753211 11
Q ss_pred Cc-cccccccccccc---ccccccC--------------CCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccc
Q psy2902 654 SA-SAEASNFADAFG---DIFGDIF--------------GSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS 715 (945)
Q Consensus 654 ~~-~~~~~~f~d~f~---~~F~~~~--------------g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~ 715 (945)
++ +.++.+|+|+|+ +||++.. +++..+.....+.++.|+++.|+++|++++.|+++.+.+.+
T Consensus 83 ~~~~~~~~~~~d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~r 162 (397)
T PRK14281 83 PGYGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIKK 162 (397)
T ss_pred CCCCcCCCCHHHHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEEEe
Confidence 10 011123455553 5665321 00000000012246889999999999999999999999999
Q ss_pred cccCCCCCccccccCcCcccCCCCCCCceEeEe----eceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEe
Q psy2902 716 WDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQ----QGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKI 791 (945)
Q Consensus 716 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~i 791 (945)
...|+.|+|+|.... ...+|+.|+|+|.+.+. .|+++.+.+|+.|+|.|.++.++|..|.|.|.+.+.++++|+|
T Consensus 163 ~~~C~~C~G~G~~~~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~I 241 (397)
T PRK14281 163 QVPCKECNGTGSKTG-ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIKQGEVTVKVTV 241 (397)
T ss_pred eecCCCCCCcccCCC-CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCccEecceEEEEec
Confidence 999999999999876 57799999999987543 3667778899999999999999999999999999999999999
Q ss_pred ecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCC
Q psy2902 792 PAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEG 871 (945)
Q Consensus 792 p~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~ 871 (945)
|+|+++|++|+|+|+|++.++++.+|||||+|++++|+.|+|+|+||+++++|+|.|||+|++++|+||||++.+.||++
T Consensus 242 p~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g 321 (397)
T PRK14281 242 PAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGAVKLTIPAG 321 (397)
T ss_pred CCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCccEEEEeCCc
Confidence 99999999999999999987767899999999999999999999999999999999999999999999999988999999
Q ss_pred CCCCcEEEECCCCcCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHHHHhhhc-CCCCCCCcchhHHHHhhhcC
Q psy2902 872 TQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETSILE-GGFKHNPRTKTVLNKVKNFF 945 (945)
Q Consensus 872 ~~~g~~~~i~g~G~~~~~~~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 945 (945)
+++|+++||+|+|||..+.+.+|||||+|+|.||+.||++|+++|++|++.... +.....++.+++|+++|+||
T Consensus 322 ~~~G~~~ri~g~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (397)
T PRK14281 322 TQPETMLRIPGKGIGHLRGSGRGDQYVRVNVFVPKEVSHQDKELLKELKKSSHISPNAHNDKEEKSFFEKAKDIF 396 (397)
T ss_pred cCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHHHHHhhcccccccccCcccccHHHHHHHhh
Confidence 999999999999999766567899999999999999999999999999875211 00001345568999999986
No 40
>PRK14289 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.5e-53 Score=475.40 Aligned_cols=355 Identities=37% Similarity=0.660 Sum_probs=296.1
Q ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCCC
Q psy2902 575 SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSS 654 (945)
Q Consensus 575 ~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~~ 654 (945)
...|.+||.+..++++...++|+.. .. ..+.++|.++++||++|+|+++|++||.+|+.+++.+.++++
T Consensus 15 ~~a~~~eik~ayr~la~~~HpD~~~---------~~--~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~~~~~ 83 (386)
T PRK14289 15 KTATVDEIKKAYRKKAIQYHPDKNP---------GD--KEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAGGGG 83 (386)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCC---------CC--hHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCCCCCC
Confidence 3578899999999999999998742 11 123457888899999999999999999999887653211111
Q ss_pred cccccccccccc---cccccccCCCCC-----CCC-CCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCcc
Q psy2902 655 ASAEASNFADAF---GDIFGDIFGSNR-----DRD-NNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGN 725 (945)
Q Consensus 655 ~~~~~~~f~d~f---~~~F~~~~g~~~-----~~~-~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~ 725 (945)
+++.+.+++|+| +++|+++|++.+ .+. ....+.++.++++.|.++|++++.|+++.+.+.+.+.|+.|+|+
T Consensus 84 ~~~~~~~~~~~f~~f~~~fg~~~gg~~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~ 163 (386)
T PRK14289 84 FSGEGMSMEDIFSMFGDIFGGHGGGFGGFGGFGGGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHGT 163 (386)
T ss_pred CCCCCcChhhhhHHhhhhhcccccCcccccccccccccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCCCCC
Confidence 111112233443 333554432210 000 11223468899999999999999999999999999999999999
Q ss_pred ccccCcCcccCCCCCCCceEeEee----ceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEE
Q psy2902 726 GAKKGTSPISCFTCSGQGQVRMQQ----GFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRI 801 (945)
Q Consensus 726 G~~~~~~~~~C~~C~G~G~~~~~~----~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i 801 (945)
|........+|+.|+|+|.+.+.. |+++.+.+|+.|+|.|+++.++|..|.|.|.+.+.++++|+||+|+++|++|
T Consensus 164 G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i 243 (386)
T PRK14289 164 GAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVITVKIPAGVAEGMQL 243 (386)
T ss_pred CCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCCcEEeeeEEEEEEeCCCCCCCCEE
Confidence 999888889999999999986544 7788899999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCCCCCCcEEEEC
Q psy2902 802 RSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLR 881 (945)
Q Consensus 802 ~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~~~~g~~~~i~ 881 (945)
+|+|+|++.+.++.+|||||+|++++|+.|+|+++||++++.|+|.+|++|+++.|+|+||++.+.||+++++|+++||+
T Consensus 244 ~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g~~~ri~ 323 (386)
T PRK14289 244 SMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGKAKVKIEAGTQPGKVLRLR 323 (386)
T ss_pred EEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCCceEEEEECCccCCCcEEEEC
Confidence 99999999776677899999999999999999999999999999999999999999999999889999999999999999
Q ss_pred CCCcCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHHHHhhhcCCCCCCCc---chhHHHHhhhcC
Q psy2902 882 GKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPR---TKTVLNKVKNFF 945 (945)
Q Consensus 882 g~G~~~~~~~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 945 (945)
|+|||..+++.+|||||+|+|.||+.||++|+++|++|++.. .++|+ ..++|.+++.||
T Consensus 324 g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~q~~~l~~l~~~~-----~~~~~~~~~~~~~~~~~~~~ 385 (386)
T PRK14289 324 NKGLPSVNGYGTGDLLVNVSVYIPETLSKEEKQTLEKMENSD-----NFKPTTSIKEKIFKKFKSFF 385 (386)
T ss_pred CCCcCCCCCCCCCcEEEEEEEEeCCCCCHHHHHHHHHHHhhc-----CCCCCcchhhhHHHHHHHhh
Confidence 999997665678999999999999999999999999999852 23455 247899999987
No 41
>PRK14282 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.7e-53 Score=467.92 Aligned_cols=339 Identities=35% Similarity=0.693 Sum_probs=283.0
Q ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCC--
Q psy2902 575 SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSG-- 652 (945)
Q Consensus 575 ~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g-- 652 (945)
...|++||.+..++++..+++|+... ++ ..+.++|.++++||++|+|+++|++||.+++.++.....+
T Consensus 14 ~~a~~~eik~ayr~la~~~HPD~~~~---------~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~~~~ 83 (369)
T PRK14282 14 RNATQEEIKRAYKRLVKEWHPDRHPE---------NR-KEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQETE 83 (369)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCcc---------ch-hHHHHHHHHHHHHHHHhcChhhHHHHhhcCccccccccccCC
Confidence 35789999999999999999997421 10 1134588889999999999999999999998776532111
Q ss_pred CCccccc---cccccccc-ccccccCCCCCCC-CCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCcccc
Q psy2902 653 SSASAEA---SNFADAFG-DIFGDIFGSNRDR-DNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGA 727 (945)
Q Consensus 653 ~~~~~~~---~~f~d~f~-~~F~~~~g~~~~~-~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~ 727 (945)
++++++. .+|+++|+ ++|+.|||+++.+ .....+.++.|+.+.++++|++++.|.++.+.+.+...|+.|+|+|.
T Consensus 84 ~~g~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C~G~G~ 163 (369)
T PRK14282 84 SGGGFFEDIFKDFENIFNRDIFDIFFGERRTQEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGV 163 (369)
T ss_pred CCCcccccccccccccccchhhhHhhcccCCcccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCCCCCccCC
Confidence 1111111 12322221 3444444321110 11122356889999999999999999999999999999999999999
Q ss_pred ccCcCcccCCCCCCCceEeE----eeceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEE
Q psy2902 728 KKGTSPISCFTCSGQGQVRM----QQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRS 803 (945)
Q Consensus 728 ~~~~~~~~C~~C~G~G~~~~----~~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~ 803 (945)
.......+|+.|+|+|.+.. .+|+++.+.+|+.|+|.|+++.++|..|.|.|.+.+.++++|+||+|+.+|++|+|
T Consensus 164 ~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~ 243 (369)
T PRK14282 164 EPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKIPAGVEDGTVLRI 243 (369)
T ss_pred CCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCceeEEEEEEEEEEeCCCCCCCCEEEE
Confidence 98888889999999998743 34778888999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCe-EEEEeCCCCCCCcEEEECC
Q psy2902 804 TGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGK-AFFVIPEGTQSGKIFRLRG 882 (945)
Q Consensus 804 ~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~-~~~~i~~~~~~g~~~~i~g 882 (945)
+|+|++.++++.+|||||+|++++|+.|+|+|+||+++++|+|.||++|++++|+|+||+ +.|.||+++++|++++|+|
T Consensus 244 ~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g~~~g~~iri~G 323 (369)
T PRK14282 244 TGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPGTQPETVFRLKG 323 (369)
T ss_pred ecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCCCcCCCCEEEECC
Confidence 999999877778899999999999999999999999999999999999999999999996 6789999999999999999
Q ss_pred CCcCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHHHHhh
Q psy2902 883 KGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETSI 923 (945)
Q Consensus 883 ~G~~~~~~~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~ 923 (945)
+|||..+.+.+|||||+|+|.+|+.|+.+++++|++|+...
T Consensus 324 kG~p~~~~~~~GDL~V~~~v~~P~~l~~~~~~ll~~l~~~~ 364 (369)
T PRK14282 324 KGLPNMRYGRRGDLIVNVHVEIPKRLSREERKLLKELAKKR 364 (369)
T ss_pred CCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 99997655568999999999999999999999999998763
No 42
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=100.00 E-value=4.3e-53 Score=469.35 Aligned_cols=316 Identities=33% Similarity=0.539 Sum_probs=273.3
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCCCc
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSA 655 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~~~ 655 (945)
..|.+||.+..++++..+++|+.-. .++|.++++||++|+|++||++||.+|+.++..+. +
T Consensus 39 ~As~~eIKkAYrkla~k~HPDk~~~---------------~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~----~ 99 (421)
T PTZ00037 39 DCTTSEIKKAYRKLAIKHHPDKGGD---------------PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGE----Q 99 (421)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCch---------------HHHHHHHHHHHHHhccHHHHHHHhhhcchhcccCC----C
Confidence 4689999999999999999997310 24788999999999999999999999988765221 1
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCccccccCcCccc
Q psy2902 656 SAEASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPIS 735 (945)
Q Consensus 656 ~~~~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~~~~~ 735 (945)
+.+|.|+|+.||+++ ++ ..+..++.|+.+.|+++|+++|.|+++.+.+.+...|+.|+|+|.... ...+
T Consensus 100 ---~~d~~d~f~~~Fggg---~~----~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~-~~~~ 168 (421)
T PTZ00037 100 ---PADASDLFDLIFGGG---RK----PGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKD-AFVD 168 (421)
T ss_pred ---CcchhhhHHHhhccc---cc----cccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCCC-CCcc
Confidence 124567777777532 11 112346889999999999999999999999999999999999998644 5779
Q ss_pred CCCCCCCceEeEe--ec--eeeeeecCCCCCCceEEee--cCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCCC
Q psy2902 736 CFTCSGQGQVRMQ--QG--FFSIQQTCPKCQGAGKVIP--HPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEP 809 (945)
Q Consensus 736 C~~C~G~G~~~~~--~~--~~~~~~~C~~C~G~g~~~~--~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~~ 809 (945)
|+.|+|+|..... .| +++++.+|+.|+|.|++++ ++|..|.|.|.+.+.++++|+||+|+.+|++|+|+|+|++
T Consensus 169 C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I~~~G~Gd~ 248 (421)
T PTZ00037 169 CKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGEADE 248 (421)
T ss_pred CCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEEEEecccCC
Confidence 9999999975322 13 3467889999999999976 8999999999999999999999999999999999999998
Q ss_pred CCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCe-EEEEeCCC--CCCCcEEEECCCCcC
Q psy2902 810 GLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGK-AFFVIPEG--TQSGKIFRLRGKGIK 886 (945)
Q Consensus 810 ~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~-~~~~i~~~--~~~g~~~~i~g~G~~ 886 (945)
.++ +.+|||||+|++++|+.|+|+|+||+++++|+|.|||+|+++.|+||||+ +.+.||++ ++||++++|+|+|||
T Consensus 249 ~~~-~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~pg~~~~I~geGmP 327 (421)
T PTZ00037 249 KPN-EIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVKPGDIKVINNEGMP 327 (421)
T ss_pred CCC-CCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccCCCcEEEeCCCCcc
Confidence 664 67999999999999999999999999999999999999999999999997 57889987 999999999999999
Q ss_pred CCCC-CCCccEEEEEEEECC--CCCCHHHHHHHHHHHHh
Q psy2902 887 NIRS-SIPGDLFCHVTIETP--VQLTEYQKKLLRSLETS 922 (945)
Q Consensus 887 ~~~~-~~~Gdl~v~~~i~~p--~~l~~~~~~~~~~~~~~ 922 (945)
..+. +.+|||||+|+|.|| +.||++|+++|++|+..
T Consensus 328 ~~~~~~~rGDL~V~~~V~~P~~~~Ls~~qk~ll~~l~~~ 366 (421)
T PTZ00037 328 TYKSPFKKGNLYVTFEVIFPVDRKFTNEEKEILKSLFPQ 366 (421)
T ss_pred cCCCCCCCCCEEEEEEEEcCCCCCCCHHHHHHHHHhccC
Confidence 7554 468999999999999 99999999999999864
No 43
>PRK14293 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.5e-52 Score=461.76 Aligned_cols=350 Identities=33% Similarity=0.640 Sum_probs=292.2
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCCCc
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSA 655 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~~~ 655 (945)
..|.+||.+..+++....++|+.. . ..+.++|..+++||++|+++++|++||.+++.|++++. +.++
T Consensus 14 ~a~~~eik~ayr~la~~~HPD~~~---------~---~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~-~~~~ 80 (374)
T PRK14293 14 DADKDELKRAYRRLARKYHPDVNK---------E---PGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAA-GFPD 80 (374)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCC---------C---cCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCC-CcCC
Confidence 578899999999999988988631 1 12345778889999999999999999999988765321 1111
Q ss_pred ccccccccccccccccccCCCCCCC--CCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCccccccCcCc
Q psy2902 656 SAEASNFADAFGDIFGDIFGSNRDR--DNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSP 733 (945)
Q Consensus 656 ~~~~~~f~d~f~~~F~~~~g~~~~~--~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~~~ 733 (945)
.....+|.|+|++||+++.+.+... ....++.++.++++.|.++|++++.|.++.+.+++...|+.|+|+|.......
T Consensus 81 ~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~ 160 (374)
T PRK14293 81 MGDMGGFADIFETFFSGFGGAGGQGGRRRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGP 160 (374)
T ss_pred cccccchHHHHHHHhcccCCCCCCCccccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCC
Confidence 0111245677877886531111000 01122346789999999999999999999999999999999999999888888
Q ss_pred ccCCCCCCCceEeEe----eceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCCC
Q psy2902 734 ISCFTCSGQGQVRMQ----QGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEP 809 (945)
Q Consensus 734 ~~C~~C~G~G~~~~~----~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~~ 809 (945)
.+|+.|+|+|.+.+. +|+++...+|+.|.|.|+++.++|..|.|.|.+.+.++++|+||||+++|++|+|+|+|++
T Consensus 161 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l~g~G~~ 240 (374)
T PRK14293 161 TTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVSGEGDA 240 (374)
T ss_pred eeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCcccccceEEEEEeCCCCCCCCEEEEccCccC
Confidence 899999999987543 3778888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCCCCCCcEEEECCCCcCCCC
Q psy2902 810 GLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIR 889 (945)
Q Consensus 810 ~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~~~~g~~~~i~g~G~~~~~ 889 (945)
...++.+|||||+|++++|+.|+|+|+||+++++|+|.||++|+++.|+|+||++.+.||+++++|+++||+|+|||..+
T Consensus 241 ~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldG~~~i~ip~~~~~g~~~ri~g~G~p~~~ 320 (374)
T PRK14293 241 GLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGPVELTIPAGTQPNTVLTLENKGVPRLG 320 (374)
T ss_pred CCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCCCCEEEEeCCCCCCCCEEEECCCCCCCCC
Confidence 76666789999999999999999999999999999999999999999999999888899999999999999999999755
Q ss_pred C-CCCccEEEEEEEECCCCCCHHHHHHHHHHHHhhhcCCCCCCC-cchhHHHHh
Q psy2902 890 S-SIPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNP-RTKTVLNKV 941 (945)
Q Consensus 890 ~-~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 941 (945)
. +.+|||||+|+|.||+.|+++|+++|++|+....+ -.+| +..+||+.+
T Consensus 321 ~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~l~~~~~~---~~~~~~~~~~~~~~ 371 (374)
T PRK14293 321 NPVARGDHLITVKVKIPTRISDEERELLEKLAKIKGE---RQGKGGIEGFFGGL 371 (374)
T ss_pred CCCCcCCEEEEEEEECCCCCCHHHHHHHHHHHhhccc---cCCccchhhHHHHh
Confidence 4 46899999999999999999999999999976432 2344 466787765
No 44
>PRK14291 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.7e-52 Score=461.41 Aligned_cols=336 Identities=39% Similarity=0.712 Sum_probs=285.1
Q ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCCC
Q psy2902 575 SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSS 654 (945)
Q Consensus 575 ~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~~ 654 (945)
...|.+||.+..++++...++|+.. . ..+.++|.++++||++|+|+++|++||.+++.++..+.++..
T Consensus 13 ~~a~~~~ik~ayr~la~~~HPD~~~---------~---~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~ 80 (382)
T PRK14291 13 RNATQEEIKKAYRRLARKYHPDFNK---------N---PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQ 80 (382)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCC---------C---ccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCccc
Confidence 3468899999999999989998732 1 123457888999999999999999999999887653211110
Q ss_pred --cc---ccccccccccccccc-----ccCCCCCC-CC---CCCCCCCCccceeeccccccccccceeeEeeccccccCC
Q psy2902 655 --AS---AEASNFADAFGDIFG-----DIFGSNRD-RD---NNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICK 720 (945)
Q Consensus 655 --~~---~~~~~f~d~f~~~F~-----~~~g~~~~-~~---~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~ 720 (945)
++ ..+.+|+|+|.+||+ ++|++... +. ....+.++.|+.+.|+++|++++.|.++.+.+.+...|+
T Consensus 81 ~~~~~~~~~~~~~~d~f~~~f~~fg~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~ 160 (382)
T PRK14291 81 GQEGFSDFGGGNIEDILEDVFDIFGFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCE 160 (382)
T ss_pred cccccccccCCCHHHHHHHHHHhccccccccccccccccccccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCC
Confidence 01 112345566666642 22332100 00 012234688999999999999999999999999999999
Q ss_pred CCCccccccCcCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeE
Q psy2902 721 SCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMR 800 (945)
Q Consensus 721 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~ 800 (945)
.|+|+|........+|+.|+|+|.+....|+++.+.+|+.|+|.|. +.++|..|.|.|.+.+.++++|+||||+.+|++
T Consensus 161 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~-~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~ 239 (382)
T PRK14291 161 ACGGTGYDPGSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGV-LREPCSKCNGRGLVIKKETIKVRIPPGVDNGSK 239 (382)
T ss_pred CCccccCCCCCCCccCCCCCCceEEEEecceEEEEecCCCCCCceE-EccCCCCCCCCceEEeeeEEEEEeCCCCCCCCE
Confidence 9999999988888999999999999888888899999999999995 688999999999999999999999999999999
Q ss_pred EEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCe-EEEEeCCCCCCCcEEE
Q psy2902 801 IRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGK-AFFVIPEGTQSGKIFR 879 (945)
Q Consensus 801 i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~-~~~~i~~~~~~g~~~~ 879 (945)
|+|+|+|++.++++.+|||||+|++++|+.|+|+|+||++++.|+|.||++|+++.|+|+||+ +.|.||+++++|++++
T Consensus 240 i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g~~~G~~i~ 319 (382)
T PRK14291 240 LRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPGTKEGDKIR 319 (382)
T ss_pred EEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEEEEEECCccCCCCEEE
Confidence 999999999877778999999999999999999999999999999999999999999999996 6789999999999999
Q ss_pred ECCCCcCCCCCCCCccEEEEEEEECCC--CCC------HHHHHHHHHHHHhh
Q psy2902 880 LRGKGIKNIRSSIPGDLFCHVTIETPV--QLT------EYQKKLLRSLETSI 923 (945)
Q Consensus 880 i~g~G~~~~~~~~~Gdl~v~~~i~~p~--~l~------~~~~~~~~~~~~~~ 923 (945)
|+|+|||..+...+|||||+|+|.||+ .|| ++|+++|++|...+
T Consensus 320 i~G~G~p~~~~~~~GDL~V~~~V~~P~~~~ls~~~~~~~~~~~~~~~l~~~~ 371 (382)
T PRK14291 320 VPGKGMPRLKGSGYGDLVVRVHIDVPKISMLSKLMGDGKKAKKLLKELDKLL 371 (382)
T ss_pred ECCCCCCCCCCCCCCCEEEEEEEEeCCCcCcCccccCCHHHHHHHHHHHhhc
Confidence 999999986655789999999999997 599 99999999998775
No 45
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=100.00 E-value=5e-52 Score=459.60 Aligned_cols=333 Identities=49% Similarity=0.871 Sum_probs=283.2
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCCCc
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSA 655 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~~~ 655 (945)
..|.+||.+..++++...++|+... ..+.++|..+++||++|+|+.+|++||.+++.+++.+.+++++
T Consensus 11 ~a~~~~ik~ayr~la~~~HPD~~~~------------~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~ 78 (354)
T TIGR02349 11 DASEEEIKKAYRKLAKKYHPDRNKD------------KEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGGG 78 (354)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCC------------ccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCCCC
Confidence 4688999999999999888887420 1123577788999999999999999999998877542221111
Q ss_pred cc------ccccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCcccccc
Q psy2902 656 SA------EASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKK 729 (945)
Q Consensus 656 ~~------~~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~ 729 (945)
++ ...+|.|+|+.||++.++++. .....+.++.|++++|+++|+++|.|.++.+.+.+...|+.|+|+|...
T Consensus 79 ~~~~~~~~~~~~~~~~f~~~fg~~~g~~~--~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~ 156 (354)
T TIGR02349 79 GFNGFDIGFFGDFGDIFGDFFGGGGGSGR--RRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKP 156 (354)
T ss_pred CcCCccccCcCchhhhHHHHhccCcccCc--cccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCCC
Confidence 10 112345666666654322111 1112345688999999999999999999999999999999999999988
Q ss_pred CcCcccCCCCCCCceEeEe----eceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcC
Q psy2902 730 GTSPISCFTCSGQGQVRMQ----QGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTG 805 (945)
Q Consensus 730 ~~~~~~C~~C~G~G~~~~~----~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g 805 (945)
.....+|+.|+|+|.+... +|+++.+.+|+.|.|+|+++.++|..|.|.|.+.+.++++|+||+|+++|++|+|+|
T Consensus 157 ~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g 236 (354)
T TIGR02349 157 GTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVDTGQRLRVSG 236 (354)
T ss_pred CCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCCcEecccceEEEEECCCCCCCCEEEEec
Confidence 8888999999999987543 457778889999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCCCCCCcEEEECCCCc
Q psy2902 806 NGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGI 885 (945)
Q Consensus 806 ~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~~~~g~~~~i~g~G~ 885 (945)
+|++..++..+|||||+|++++|+.|+|+|+||++++.|+|.|||+|+++.|+||||.+.+.||+++++|++++|+|+||
T Consensus 237 ~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~~~~i~g~G~ 316 (354)
T TIGR02349 237 KGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDGDVKLKIPAGTQSGTVFRLKGKGV 316 (354)
T ss_pred CccCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCCceEEEEECCcccCCcEEEECCCCc
Confidence 99997766778999999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred CCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHHHHh
Q psy2902 886 KNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETS 922 (945)
Q Consensus 886 ~~~~~~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~ 922 (945)
|..+++.+|||||+|+|.||+.|+++|+++|+++++.
T Consensus 317 p~~~~~~~GDL~i~~~v~~P~~l~~~~~~~l~~~~~~ 353 (354)
T TIGR02349 317 PRLRGNGRGDLLVTVKVETPKNLSKEQKELLEELAEA 353 (354)
T ss_pred CCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 9766557899999999999999999999999999753
No 46
>PRK14292 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1e-51 Score=458.90 Aligned_cols=351 Identities=34% Similarity=0.613 Sum_probs=289.7
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCCCc
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSA 655 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~~~ 655 (945)
..|.+||.+..+++.+..++|+... ..+.+++..+++||++|+|+++|++||.+|+.+..+..++++.
T Consensus 13 ~a~~~~ik~ayr~l~~~~hpD~~~~------------~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~~~~~ 80 (371)
T PRK14292 13 TASADEIKSAYRKLALKYHPDRNKE------------KGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGGDPF 80 (371)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCC------------hhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccCCccc
Confidence 4688999999999999889887421 1233567888999999999999999999998763211111110
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCccccccCc-Ccc
Q psy2902 656 SAEASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGT-SPI 734 (945)
Q Consensus 656 ~~~~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~-~~~ 734 (945)
++++.++.|+|+.||++...++. . ..+++.++.++++.+.++|++++.|+++.+.+.+...|+.|+|+|..... ...
T Consensus 81 ~~~~~d~~d~f~~~fg~~~~~~~-~-~~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~ 158 (371)
T PRK14292 81 GGMGFDPMDIFEQLFGGAGFGGG-R-GRRGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPK 158 (371)
T ss_pred CccCCChHHHHHHhhCCCCcCCC-C-CcccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCc
Confidence 11112344677777764310111 0 11223568899999999999999999999999999999999999987664 478
Q ss_pred cCCCCCCCceEeEe----eceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCCCC
Q psy2902 735 SCFTCSGQGQVRMQ----QGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPG 810 (945)
Q Consensus 735 ~C~~C~G~G~~~~~----~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~~~ 810 (945)
+|+.|+|+|.+.+. .|+++.+.+|+.|+|.|+.+.++|..|.|.|.+.+.++++|.||+|+++|++|+|+|+|++.
T Consensus 159 ~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~G~G~~~ 238 (371)
T PRK14292 159 TCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAGMGNEG 238 (371)
T ss_pred cCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceEEeecceEEEEECCCCCCCcEEEEecCcCCC
Confidence 99999999987543 37777889999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCCCCCCcEEEECCCCcCCCCC
Q psy2902 811 LNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRS 890 (945)
Q Consensus 811 ~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~~~~g~~~~i~g~G~~~~~~ 890 (945)
+++ . |||||+|++++|+.|+|+|+||++++.|+|.+|++|+++.|+||+|+..+.||+++++|++++|+|+|||..++
T Consensus 239 ~~~-~-GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~~~i~g~G~p~~~~ 316 (371)
T PRK14292 239 PGG-N-GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQVIEVKPGTQHGDLHRLRGQGMPRLQG 316 (371)
T ss_pred CCC-C-CCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCCCEEEecCCCcCCCcEEEECCCCCCCCCC
Confidence 654 3 99999999999999999999999999999999999999999999999889999999999999999999998666
Q ss_pred CCCccEEEEEEEECCCCCCHHHHHHHHHHHHhhhcCCCCCCCcchhHHHHhhhcC
Q psy2902 891 SIPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRTKTVLNKVKNFF 945 (945)
Q Consensus 891 ~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (945)
..+|||||+|+|.+|+.|+++|+++|++|+..... ..++++ ..+|.++++||
T Consensus 317 ~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~~~~~~--~~~~~~-~~~~~~~~~~~ 368 (371)
T PRK14292 317 AGTGDLIVEYEIAVPKQLSPEAREALEAYARAVGD--EVPEPH-EGLFDKVGKLF 368 (371)
T ss_pred CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhccc--ccCccc-ccHHHHHHHHh
Confidence 66899999999999999999999999999865311 112344 38889999887
No 47
>PRK14283 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.9e-51 Score=456.59 Aligned_cols=352 Identities=39% Similarity=0.684 Sum_probs=287.8
Q ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCC-
Q psy2902 575 SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGS- 653 (945)
Q Consensus 575 ~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~- 653 (945)
...|.+||.+..++++..+++|+. .. -.+.++|.++++||++|+|+++|++||++|+.|++....++
T Consensus 15 ~~a~~~eik~ayr~la~~~HPD~~---------~~---~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~~~~~~ 82 (378)
T PRK14283 15 RNADKKEIKKAYRKLARKYHPDVS---------EE---EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGFSQEDI 82 (378)
T ss_pred CCCCHHHHHHHHHHHHHHHCcCCC---------CC---ccHHHHHHHHHHHHHHhchhHHHHHHhhhccccccccccccc
Confidence 356889999999999999999963 21 13456888999999999999999999999988765211100
Q ss_pred -Cccccc---cccccccccccccc-CCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCccccc
Q psy2902 654 -SASAEA---SNFADAFGDIFGDI-FGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAK 728 (945)
Q Consensus 654 -~~~~~~---~~f~d~f~~~F~~~-~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~ 728 (945)
...... ..|...|+++|+.+ |++++ ..++.++.+++++|+++|++++.|+++.+.+.+...|+.|+|+|..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~f~~~~fgg~~----~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~~ 158 (378)
T PRK14283 83 FNNINFEDIFQGFGFGIGNIFDMFGFGGGS----RHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAE 158 (378)
T ss_pred ccccCccccccccccchhhhccccccCCCC----CCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCccccC
Confidence 000000 01110122333333 33211 1223467899999999999999999999999999999999999998
Q ss_pred cCcCcccCCCCCCCceEeEe----eceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEc
Q psy2902 729 KGTSPISCFTCSGQGQVRMQ----QGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRST 804 (945)
Q Consensus 729 ~~~~~~~C~~C~G~G~~~~~----~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~ 804 (945)
......+|+.|+|+|.+... .|+++...+|+.|.|.|+.+.++|..|.|.|.+.+.++++|.||+|+++|++++|+
T Consensus 159 ~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~l~ 238 (378)
T PRK14283 159 PGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGVETGSRLRVS 238 (378)
T ss_pred CCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCceeeccceeEEEEECCCCCCCcEEEEe
Confidence 88888899999999987543 36777788999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCCCCCCcEEEECCCC
Q psy2902 805 GNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKG 884 (945)
Q Consensus 805 g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~~~~g~~~~i~g~G 884 (945)
|+|++.+.++.+|||||+|++++|+.|+|+|+||+++++|+|.+|++|++++|+||||.+.+.||+++++|+++||+|+|
T Consensus 239 g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~~~ri~g~G 318 (378)
T PRK14283 239 GEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDGPVELKIPAGTQSGTTFRLKGHG 318 (378)
T ss_pred ccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCCceEEEEeCCCCCCCCEEEECCCC
Confidence 99999876678999999999999999999999999999999999999999999999998788999999999999999999
Q ss_pred cCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHHHHhhhcCCCCCCCcchhHHHHhhhcC
Q psy2902 885 IKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRTKTVLNKVKNFF 945 (945)
Q Consensus 885 ~~~~~~~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (945)
||....+.+|||||+|+|.||+.||++|+++|+++++.... ..+.+..+++..++.||
T Consensus 319 ~p~~~~~~~GdL~v~~~v~~P~~l~~~q~~ll~~~~~~~~~---~~~~~~~~~~~~~~~~~ 376 (378)
T PRK14283 319 MPSLRWSGKGNLYVKVKVVVPKKLSPKQKELLREFASISGD---EIHHVKKGLFDKVKDAI 376 (378)
T ss_pred CCCCCCCCCCCEEEEEEEEeCCCCCHHHHHHHHHHHhhccc---ccCcccccHHHHHHHHh
Confidence 99765567899999999999999999999999999864211 11222336777666553
No 48
>PRK14290 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.2e-51 Score=451.68 Aligned_cols=336 Identities=36% Similarity=0.633 Sum_probs=280.4
Q ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCCC
Q psy2902 575 SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSS 654 (945)
Q Consensus 575 ~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~~ 654 (945)
...|.+||.+..+++....++|+. +.+. ..+.++|.++++||++|+|+++|++||.+|+.++++++++.+
T Consensus 13 ~~a~~~eik~ayr~la~~~HPD~~---------~~~~-~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~~~~ 82 (365)
T PRK14290 13 RNASQEDIKKAFRELAKKWHPDLH---------PGNK-AEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSNFN 82 (365)
T ss_pred CCCCHHHHHHHHHHHHHHHCcCCC---------CCch-hHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCCCcc
Confidence 357899999999999998999862 2211 123457888999999999999999999999987753211111
Q ss_pred -ccc-ccccccccccccccccCCCC---CCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCcccccc
Q psy2902 655 -ASA-EASNFADAFGDIFGDIFGSN---RDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKK 729 (945)
Q Consensus 655 -~~~-~~~~f~d~f~~~F~~~~g~~---~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~ 729 (945)
+++ ...+|.|+|+.||++++++. +.....+....+.|+++.|+++|++++.|+++.+.+.+...|+.|+|+|...
T Consensus 83 ~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~~ 162 (365)
T PRK14290 83 WDNFTHFSDINDIFNQIFGGNFGSDFFSGFGNQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKN 162 (365)
T ss_pred ccccccccchhHHHHHHhcCccccccccccccccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCccccCCC
Confidence 010 11356677877777532210 0000111112378999999999999999999999999999999999999877
Q ss_pred CcCcccCCCCCCCceEeEee--cee--eeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcC
Q psy2902 730 GTSPISCFTCSGQGQVRMQQ--GFF--SIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTG 805 (945)
Q Consensus 730 ~~~~~~C~~C~G~G~~~~~~--~~~--~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g 805 (945)
. ...+|+.|+|+|.+.+.. |++ +.+.+|+.|.|.|+++..+|..|+|.|.+.+.++++|+||+|+.+|++|+|+|
T Consensus 163 ~-~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g 241 (365)
T PRK14290 163 G-KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIPKGATDNLRLRVKG 241 (365)
T ss_pred C-CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEccCCCCCCCCceeEEEeeEEEEEECCCCCCCcEEEEcc
Confidence 5 577999999999875543 554 34689999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCCCCCCcEEEECCCCc
Q psy2902 806 NGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGI 885 (945)
Q Consensus 806 ~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~~~~g~~~~i~g~G~ 885 (945)
+|+. .++.+|||||+|++++|+.|+|+|+||+++++|+|.||++|+++.|+|++|.+.+.||+++++|+++||+|+||
T Consensus 242 ~G~~--~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~i~V~Ip~g~~~g~~iri~g~G~ 319 (365)
T PRK14290 242 KGQS--YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREKYNLKIPEGTQPGEVLKIKGAGM 319 (365)
T ss_pred ccCC--CCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCceEEEEECCccCCCcEEEECCCCC
Confidence 9986 35679999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred CCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHHHHhh
Q psy2902 886 KNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETSI 923 (945)
Q Consensus 886 ~~~~~~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~ 923 (945)
|..+.+.+|||||+|+|.+|+.|+++|+++|++++...
T Consensus 320 p~~~~~~~GDL~V~~~V~~P~~l~~~~~~ll~~~~~~~ 357 (365)
T PRK14290 320 PHLNGHGSGDLLVRINVEVPKRLTSKQKELIREFFDIK 357 (365)
T ss_pred CCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 97665568999999999999999999999999998763
No 49
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=3.5e-49 Score=445.73 Aligned_cols=341 Identities=26% Similarity=0.394 Sum_probs=287.5
Q ss_pred eEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEe----------------------------------------
Q psy2902 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQ---------------------------------------- 112 (945)
Q Consensus 73 viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~---------------------------------------- 112 (945)
++|||||||||++|+++++.++++++..|...+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 6999999999999999999999999999999999999995
Q ss_pred eCCcEEecHHHHHhhhhCCCch--hHHHHHhhCCCCCcHHHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHH
Q psy2902 113 ENGEILVGAPAKRQAVTNPKNT--IYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLR 190 (945)
Q Consensus 113 ~~~~~~~G~~A~~~~~~~~~~~--i~~~k~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~ 190 (945)
+++..++|..|..++..+|..+ +.++|++||...-.+ +....++++++++|+
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~--------------------------~~~~~~e~l~a~iL~ 135 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKP--------------------------QQVALFEDLVCAMML 135 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCCCc--------------------------cceeCHHHHHHHHHH
Confidence 3457789999999999999888 779999998642110 122348999999999
Q ss_pred HHHHHHHHHhCCCCCcEEEEcCCCCC-----HHHHHH---HHHHHHHcCCccceecchhHHHHHHhccCCCCCCCceEEE
Q psy2902 191 KMKKTAEDYLGGEITEAVITVPAYFN-----DAQRQA---TKDAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVV 262 (945)
Q Consensus 191 ~l~~~a~~~~~~~~~~~VitVPa~~~-----~~qr~~---l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlV 262 (945)
+|++.++.+++.++.++|||||++|+ +.||++ |++||+.|||+++.+++||+|||++|+... ..+..+||
T Consensus 136 ~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~--~~~~~vlV 213 (450)
T PRK11678 136 HIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATL--TEEKRVLV 213 (450)
T ss_pred HHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhcccc--CCCCeEEE
Confidence 99999999999999999999999998 777765 799999999999999999999999998654 46788999
Q ss_pred EEeCCcceEEEEEEEEeec---CCceEEEEEecCCCCCchHHHHHHHH-HHHHHHHHHH----hCCCC------------
Q psy2902 263 YDLGGGTFDVSIIEIADVD---GEKQFEVLSTNGDTFLGGEDFDQRII-DYILDEFNKI----NGIDL------------ 322 (945)
Q Consensus 263 vD~GggT~dvsv~~~~~~~---~~~~~~vl~~~~~~~lGG~~iD~~l~-~~l~~~~~~~----~~~~~------------ 322 (945)
+|+||||+|+|++++.... .....+++++.| ..+||++||..|+ +++...|... .+.++
T Consensus 214 ~D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~~~~~~~~ 292 (450)
T PRK11678 214 VDIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAVAIN 292 (450)
T ss_pred EEeCCCeEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchhhhhhhhhh
Confidence 9999999999999984321 123467899887 6899999999997 6777776421 11100
Q ss_pred -----------------------ccCHHHH------------HHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEE
Q psy2902 323 -----------------------RKDSIAL------------QRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLN 367 (945)
Q Consensus 323 -----------------------~~~~~~~------------~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~ 367 (945)
..++..+ .+|+.+||++|+.||....+.+.++.+.. ++.
T Consensus 293 ~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~~------~~~ 366 (450)
T PRK11678 293 DVPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFISD------GLA 366 (450)
T ss_pred ccchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccCC------Ccc
Confidence 0122222 36889999999999999999988876532 467
Q ss_pred EEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHH
Q psy2902 368 LKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAI 447 (945)
Q Consensus 368 ~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~ 447 (945)
..|||++|+++++++++++.++++++|+++++. ++.|+||||+|++|.|++.+++.||.......+|.++||.|+|+
T Consensus 367 ~~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~~sVa~Gla~ 443 (450)
T PRK11678 367 TEISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGSVTAGLAR 443 (450)
T ss_pred eeeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCcchHHHHHHH
Confidence 999999999999999999999999999999876 47999999999999999999999987666678999999999999
Q ss_pred hhhh
Q psy2902 448 QGSV 451 (945)
Q Consensus 448 ~a~~ 451 (945)
+|..
T Consensus 444 ~a~~ 447 (450)
T PRK11678 444 WAQV 447 (450)
T ss_pred HHHh
Confidence 9964
No 50
>KOG0712|consensus
Probab=100.00 E-value=1.3e-45 Score=384.53 Aligned_cols=313 Identities=34% Similarity=0.576 Sum_probs=265.9
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCCCc
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSA 655 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~~~ 655 (945)
.-|++||++..++++...+.|+ ..++.++|++|++||++|||+|||++||++|+.|++.+++|+++
T Consensus 15 ~As~~eikkayrkla~k~HpDk--------------n~~~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~~g~ 80 (337)
T KOG0712|consen 15 DASEEEIKKAYRKLALKYHPDK--------------NPDAGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGGGGF 80 (337)
T ss_pred CcCHHHHHHHHHHHHHHhCCCC--------------CccHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCCCCC
Confidence 4678888888877777666665 33467899999999999999999999999999998654433221
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCccccccCcCccc
Q psy2902 656 SAEASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPIS 735 (945)
Q Consensus 656 ~~~~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~~~~~ 735 (945)
+ . |++||+ ||+.+++ +..++.++.+.++++|+++|.|.+....++++.+|+.|.|+|....... +
T Consensus 81 --~--~----f~~~F~--~g~~~~~----~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~-~ 145 (337)
T KOG0712|consen 81 --G--G----FSQFFG--FGGNGGR----GRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAP-K 145 (337)
T ss_pred --c--c----HHHhcc--CCCcCcc----ccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCC-C
Confidence 1 1 555555 2332222 2223899999999999999999999999999999999999999988755 7
Q ss_pred CCCCCCCceE----eEeecee-eeeecCCCCCCceEE--eecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCC
Q psy2902 736 CFTCSGQGQV----RMQQGFF-SIQQTCPKCQGAGKV--IPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGE 808 (945)
Q Consensus 736 C~~C~G~G~~----~~~~~~~-~~~~~C~~C~G~g~~--~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~ 808 (945)
|+.|.|+|.. .+.+|+. +++..|..|+|.|.. ..+.|..|.|.+.+...+.++|+|++|+.+++++.+.|+++
T Consensus 146 C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki~f~gead 225 (337)
T KOG0712|consen 146 CTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKITFKGEAD 225 (337)
T ss_pred CCCCCCCCceeEEEeccccccccceeEeccCCCccccccccccCcccccchhhhhhheeeccccCCCcccceeeeeeeee
Confidence 9999999975 3445443 578899999999997 56889999999999999999999999999999999999998
Q ss_pred CCCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeEE-EEeCCC--CCCCcEEEECCCCc
Q psy2902 809 PGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAF-FVIPEG--TQSGKIFRLRGKGI 885 (945)
Q Consensus 809 ~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~-~~i~~~--~~~g~~~~i~g~G~ 885 (945)
..+. ..+||+++.+..+.|+.|.|+++||++..+|+|.||++|+.+.+.||||+.+ +.++++ ++||.+++|+|+||
T Consensus 226 ea~g-~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~~~v~~~gm 304 (337)
T KOG0712|consen 226 EAPG-TKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPGDTKRVEGEGM 304 (337)
T ss_pred ecCC-CcCccEEEEecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeChhHEEeecCCCc
Confidence 8655 4599999999999999999999999999999999999999999999999765 456665 89999999999999
Q ss_pred CCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHHH
Q psy2902 886 KNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLE 920 (945)
Q Consensus 886 ~~~~~~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~ 920 (945)
|..+.. .|||||+|+|+||+ +++++...|++++
T Consensus 305 p~~~~~-~g~lyi~~~v~fp~-~~~~~~~~l~~~l 337 (337)
T KOG0712|consen 305 PIFRNP-KGDLYIKFEVKFPK-LSPSQLKMLEDLL 337 (337)
T ss_pred ccccCC-CCcEEEEEEEEcCC-CChHHHHHHHhhC
Confidence 997766 99999999999999 9999999998764
No 51
>PRK14299 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.4e-37 Score=330.12 Aligned_cols=259 Identities=33% Similarity=0.557 Sum_probs=208.2
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCC---
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSG--- 652 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g--- 652 (945)
..|.+||.+..++++...++|+... ..+.++|.++++||++|+++++|++||.+++.+...+..+
T Consensus 15 ~a~~~eik~ayr~la~~~HPD~~~~------------~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~~~ 82 (291)
T PRK14299 15 NASQDEIKKAFKKLARKYHPDVNKS------------PGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGPPP 82 (291)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCC------------hhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCCCC
Confidence 4689999999999999999997321 1234578889999999999999999999998754321111
Q ss_pred -C-C-cccc---ccccccccccccccc--CCCCCC--CCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCC
Q psy2902 653 -S-S-ASAE---ASNFADAFGDIFGDI--FGSNRD--RDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSC 722 (945)
Q Consensus 653 -~-~-~~~~---~~~f~d~f~~~F~~~--~g~~~~--~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C 722 (945)
+ + +++. ..+|+|+|+.|||++ +++.+. ......+..+.|+++++.++|+++++|+++.+.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~g~~~~~~~~~~~~g~dl~~~l~isL~ea~~G~~~~i~l~-------- 154 (291)
T PRK14299 83 GPPGGGDFSGFNVGDFSDFFQQLFGGRGGFGGFGDLFGSVGRRARKGRDLEAELPLTLEEAYRGGEKVVEVA-------- 154 (291)
T ss_pred CCCCCCCccccCcCCHHHHHHHHhCCCCCCCCcccccccccCCCCCCCCEEEEEEecHHHHhCCCeEEEeeC--------
Confidence 0 0 1111 124556666666532 111000 00012235678999999999999999998877531
Q ss_pred CccccccCcCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEE
Q psy2902 723 YGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIR 802 (945)
Q Consensus 723 ~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~ 802 (945)
.++++|+||+|+++|++++
T Consensus 155 -------------------------------------------------------------g~~~~V~Ip~G~~~G~~ir 173 (291)
T PRK14299 155 -------------------------------------------------------------GERLSVRIPPGVREGQVIR 173 (291)
T ss_pred -------------------------------------------------------------CEEEEEecCCCcCCCcEEE
Confidence 1368999999999999999
Q ss_pred EcCCCCCCCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCCCCCCcEEEECC
Q psy2902 803 STGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRG 882 (945)
Q Consensus 803 ~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~~~~g~~~~i~g 882 (945)
++|+|++. |||||+|++++|+.|+|+|+||+++++|++.+|++|++++|+|+||.+.+.||+++++|+++||+|
T Consensus 174 ~~g~G~~~------GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~v~tldG~~~v~ip~~~~~g~~~rl~g 247 (291)
T PRK14299 174 LAGKGRQG------GDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLDGPVEVTIPPRTQAGRKLRLKG 247 (291)
T ss_pred ECCCCCCC------CCEEEEEEEcCCCCeEEECCEEEEEEecCHHHHhCCCEEEEECCCCCEEEEeCCCcCCCCEEEECC
Confidence 99999973 999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred CCcCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHHHHh
Q psy2902 883 KGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETS 922 (945)
Q Consensus 883 ~G~~~~~~~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~ 922 (945)
+|||.. .+.+|||||+|+|.+|+.|+++|+++|++|++.
T Consensus 248 ~G~p~~-~~~~GDL~v~~~V~~P~~l~~~~~~~l~~l~~~ 286 (291)
T PRK14299 248 KGWPRG-PAGRGDQYAEVRITIPTRPTPEEERLYKQLAEL 286 (291)
T ss_pred CCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 999963 456899999999999999999999999999865
No 52
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=100.00 E-value=7.2e-37 Score=330.49 Aligned_cols=283 Identities=31% Similarity=0.509 Sum_probs=220.6
Q ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccc----cCCCCC
Q psy2902 575 SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHA----GIDPNM 650 (945)
Q Consensus 575 ~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~----g~~~~~ 650 (945)
...|.+||.+..+++....++|+. .. ..+...|.++++||++|+++++|+.||.++.. ++....
T Consensus 14 ~~a~~~eik~ayr~la~k~HPD~~---------~~---~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~~~~~~~~~~~ 81 (306)
T PRK10266 14 PTDDLKTIKTAYRRLARKYHPDVS---------KE---PDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQF 81 (306)
T ss_pred CCCCHHHHHHHHHHHHHHHCcCCC---------CC---ccHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccCccccccc
Confidence 357889999999999999999962 11 12345788999999999999999999998754 222111
Q ss_pred CCCCc-ccccccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCcccccc
Q psy2902 651 SGSSA-SAEASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKK 729 (945)
Q Consensus 651 ~g~~~-~~~~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~ 729 (945)
+.+++ .....+|.++|+.||+++ ++. ..+....++.|+.+++.++|+++++|+.+.+.+.+. .
T Consensus 82 ~~~~~~~~~~~~~~~~f~~~~g~~-~~~---~~~~~~~kg~di~~~v~isLee~~~G~~k~i~~~~~----~-------- 145 (306)
T PRK10266 82 QHGDGQSFNAEDFDDIFSSIFGQH-ARQ---SRQRPAARGHDIEIEVAVFLEETLTEHKRTISYNLP----V-------- 145 (306)
T ss_pred ccCCCCCCCCCCHHHHHHHHhCCC-CCC---CCCCCCCCCCceEEEEEEEHHHhcCCceEEEEEecc----c--------
Confidence 10111 111234566666666542 111 111223467899999999999999999888876532 1
Q ss_pred CcCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCCC
Q psy2902 730 GTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEP 809 (945)
Q Consensus 730 ~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~~ 809 (945)
|.|.|... ....++++|+||+|+++|++++++|+|++
T Consensus 146 ---------~~g~G~~~----------------------------------~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~ 182 (306)
T PRK10266 146 ---------YNAFGMIE----------------------------------QEIPKTLNVKIPAGVGNGQRIRLKGQGTP 182 (306)
T ss_pred ---------ccCCCeEE----------------------------------EeeeEEEEEEECCCCcCCcEEEEecCCcC
Confidence 22222210 01124789999999999999999999999
Q ss_pred CCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCCCCCCcEEEECCCCcCCCC
Q psy2902 810 GLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIR 889 (945)
Q Consensus 810 ~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~~~~g~~~~i~g~G~~~~~ 889 (945)
..+++.+|||||+|++++|+.|+|+|+||+++++|++.+|++|++++|+|++|++.+.||+++++|+++||+|+|||..+
T Consensus 183 ~~~~~~~GDl~v~i~v~ph~~f~r~g~DL~~~~~Isl~~al~G~~~~i~~~~g~v~v~ip~g~~~g~~~ri~g~G~p~~~ 262 (306)
T PRK10266 183 GENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKK 262 (306)
T ss_pred CCCCCCCccEEEEEEEcCCCCeEEeCCceEEEEecCHHHHhCCCEEEeeCCCccEEEEeCCCcCCCCEEEECCCCCCCCC
Confidence 87777789999999999999999999999999999999999999999999999988999999999999999999999743
Q ss_pred CCCCccEEEEEEEECCCCCCHHHHHHHHHHHHhhhcCCCCCCCcc
Q psy2902 890 SSIPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRT 934 (945)
Q Consensus 890 ~~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (945)
.+|||||+|+|.+|+.||++|+++|++|+.... .+||+.
T Consensus 263 --~~GdL~v~~~v~~P~~l~~~q~~l~~~l~~~~~----~~~~~~ 301 (306)
T PRK10266 263 --QTGDLYAVLKIVMPPKPDEKTAALWQQLADAQS----SFDPRK 301 (306)
T ss_pred --CCCCEEEEEEEECCCCCCHHHHHHHHHHHhhcc----ccCcch
Confidence 589999999999999999999999999987642 256654
No 53
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=100.00 E-value=2.5e-35 Score=326.86 Aligned_cols=310 Identities=24% Similarity=0.349 Sum_probs=239.1
Q ss_pred EEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCC-c-EEecHHHHHhhhhCCCchhHHHHHhhCCCCCcHHH
Q psy2902 74 IGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENG-E-ILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEKEV 151 (945)
Q Consensus 74 iGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~-~-~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~~~ 151 (945)
+||||||++|+++.. +...++. .||+++++.++ . ..+|.+|.......|.+...
T Consensus 6 ~gIDlGt~~~~i~~~--~~~~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~--------------- 61 (336)
T PRK13928 6 IGIDLGTANVLVYVK--GKGIVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVA--------------- 61 (336)
T ss_pred eEEEcccccEEEEEC--CCCEEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEE---------------
Confidence 899999999999775 4444444 59999998542 3 46899998766555544321
Q ss_pred HhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcC
Q psy2902 152 QKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAG 231 (945)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AG 231 (945)
..++.+..+...+++..+|+++.+.+..........++||||++|++.+|+++.+|++.||
T Consensus 62 -------------------~~pi~~G~i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~~~ag 122 (336)
T PRK13928 62 -------------------IRPLRDGVIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAAEQAG 122 (336)
T ss_pred -------------------EccCCCCeEecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcC
Confidence 1112233456667888888888866543322334579999999999999999999999999
Q ss_pred CccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHH
Q psy2902 232 LEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYIL 311 (945)
Q Consensus 232 l~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~ 311 (945)
++.+.+++||+|||++|+... ..+..++|||+||||||++++.. .. . ...++..+||.+||+.|++++.
T Consensus 123 ~~~~~li~ep~Aaa~~~g~~~--~~~~~~lVvDiGggttdvsvv~~----g~-~----~~~~~~~lGG~did~~i~~~l~ 191 (336)
T PRK13928 123 AKKVYLIEEPLAAAIGAGLDI--SQPSGNMVVDIGGGTTDIAVLSL----GG-I----VTSSSIKVAGDKFDEAIIRYIR 191 (336)
T ss_pred CCceEecccHHHHHHHcCCcc--cCCCeEEEEEeCCCeEEEEEEEe----CC-E----EEeCCcCCHHHHHHHHHHHHHH
Confidence 999999999999999998865 34667999999999999999986 21 1 1235678999999999999999
Q ss_pred HHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcc----eeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHH
Q psy2902 312 DEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQ----TEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTI 387 (945)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~----~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~ 387 (945)
.+|....+ ...||++|+.++.... ..+.+.. .+........+.++|++|++++.+.++++.
T Consensus 192 ~~~~~~~~-------------~~~ae~lK~~~~~~~~~~~~~~~~v~g--~~~~~~~~~~~~i~~~~~~eii~~~~~~i~ 256 (336)
T PRK13928 192 KKYKLLIG-------------ERTAEEIKIKIGTAFPGAREEEMEIRG--RDLVTGLPKTITVTSEEIREALKEPVSAIV 256 (336)
T ss_pred HHhchhcC-------------HHHHHHHHHHhcccccccCCcEEEEec--ccccCCCceEEEECHHHHHHHHHHHHHHHH
Confidence 87753211 3579999999876421 2222211 111111245689999999999999999999
Q ss_pred HHHHHHHHHcCC--CCCCCC-cEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhc
Q psy2902 388 EPCRIAIKDAGI--KVSDIN-DIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVL 452 (945)
Q Consensus 388 ~~i~~~l~~~~~--~~~~i~-~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~ 452 (945)
+.+.+.|+.++. ....++ .|+|+||+|++|.+++++++.|+.++....||+++||+|||+++..+
T Consensus 257 ~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 257 QAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred HHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhch
Confidence 999999998863 345677 79999999999999999999999999888899999999999998754
No 54
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=6e-35 Score=322.38 Aligned_cols=308 Identities=24% Similarity=0.357 Sum_probs=243.0
Q ss_pred eEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCc--EEecHHHHHhhhhCCCchhHHHHHhhCCCCCcHH
Q psy2902 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGE--ILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEKE 150 (945)
Q Consensus 73 viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~--~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~~ 150 (945)
.+||||||+++++ |.++... +.+ .||+|+++.++. ..+|.+|..+..+.|.++...
T Consensus 6 ~~giDlGt~~~~i--~~~~~~~-~~~------~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~------------- 63 (335)
T PRK13929 6 EIGIDLGTANILV--YSKNKGI-ILN------EPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV------------- 63 (335)
T ss_pred eEEEEcccccEEE--EECCCcE-Eec------CCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE-------------
Confidence 5999999999975 5555543 443 499999986544 579999999888888765321
Q ss_pred HHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCC--cEEEEcCCCCCHHHHHHHHHHHH
Q psy2902 151 VQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEIT--EAVITVPAYFNDAQRQATKDAGR 228 (945)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~--~~VitVPa~~~~~qr~~l~~Aa~ 228 (945)
.++....+...++++.+|++++..++..++..+. .+|||||++|++.||+++.+|++
T Consensus 64 ---------------------~pi~~G~I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~a~~ 122 (335)
T PRK13929 64 ---------------------RPMKDGVIADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVK 122 (335)
T ss_pred ---------------------ecCCCCccCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 1122233456689999999999998877776553 79999999999999999999999
Q ss_pred HcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHH
Q psy2902 229 IAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIID 308 (945)
Q Consensus 229 ~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~ 308 (945)
.||++.+.+++||+|||++|+... .....++|+|+|+||+|++++.+ .. .+ ..++..+||.+||+.|.+
T Consensus 123 ~ag~~~~~li~ep~Aaa~~~g~~~--~~~~~~lvvDiG~gtt~v~vi~~----~~-~~----~~~~~~~GG~~id~~l~~ 191 (335)
T PRK13929 123 NCGAKNVHLIEEPVAAAIGADLPV--DEPVANVVVDIGGGTTEVAIISF----GG-VV----SCHSIRIGGDQLDEDIVS 191 (335)
T ss_pred HcCCCeeEeecCHHHHHHhcCCCc--CCCceEEEEEeCCCeEEEEEEEe----CC-EE----EecCcCCHHHHHHHHHHH
Confidence 999999999999999999998765 34677999999999999999986 22 11 234567999999999999
Q ss_pred HHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcc----eeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHH
Q psy2902 309 YILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQ----TEINEPYIAMSNGAPVHLNLKITRAKLELLVDELIT 384 (945)
Q Consensus 309 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~----~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~ 384 (945)
++.+.+.- .. . ...||++|+.++.... ..+.+.. .+........+.+++++|++++.+.+.
T Consensus 192 ~l~~~~~~----~~--~-------~~~AE~iK~~l~~~~~~~~~~~~~v~g--~~~~~~~p~~i~i~~~~~~~~i~~~l~ 256 (335)
T PRK13929 192 FVRKKYNL----LI--G-------ERTAEQVKMEIGYALIEHEPETMEVRG--RDLVTGLPKTITLESKEIQGAMRESLL 256 (335)
T ss_pred HHHHHhCc----Cc--C-------HHHHHHHHHHHcCCCCCCCCceEEEeC--CccCCCCCeEEEEcHHHHHHHHHHHHH
Confidence 99876532 11 1 3579999999987421 1222211 111111235789999999999999999
Q ss_pred HHHHHHHHHHHHcCCCC--CCCC-cEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhh
Q psy2902 385 RTIEPCRIAIKDAGIKV--SDIN-DIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQG 449 (945)
Q Consensus 385 ~i~~~i~~~l~~~~~~~--~~i~-~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a 449 (945)
++.+.+.+.|+.+.... ..++ .|+|+||+|++|.+.+++++.|+.++....||+++||.||+..-
T Consensus 257 ~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 257 HILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred HHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHHH
Confidence 99999999999986443 4577 69999999999999999999999999888999999999999764
No 55
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=6.7e-33 Score=308.09 Aligned_cols=311 Identities=25% Similarity=0.382 Sum_probs=232.5
Q ss_pred CceEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeC-Cc-EEecHHHHHhhhhCCCchhHHHHHhhCCCCCc
Q psy2902 71 SKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQEN-GE-ILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNE 148 (945)
Q Consensus 71 ~~viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~-~~-~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~ 148 (945)
+..|||||||++++++.. +...++ .+||+|++..+ +. .++|.+|..+....|.++.
T Consensus 5 ~~~igIDlGt~~~~i~~~--~~~~~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~------------- 62 (334)
T PRK13927 5 SNDLGIDLGTANTLVYVK--GKGIVL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIV------------- 62 (334)
T ss_pred cceeEEEcCcceEEEEEC--CCcEEE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEE-------------
Confidence 345999999999998443 322233 27999999765 33 5899999887665554431
Q ss_pred HHHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHH
Q psy2902 149 KEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGR 228 (945)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~ 228 (945)
...++....+...+.+..+|+++........ .....+|+|+|++|++.+|+++++|++
T Consensus 63 ---------------------~~~pi~~G~i~d~~~~~~ll~~~~~~~~~~~-~~~~~~vi~vP~~~~~~~r~~~~~a~~ 120 (334)
T PRK13927 63 ---------------------AIRPMKDGVIADFDVTEKMLKYFIKKVHKNF-RPSPRVVICVPSGITEVERRAVRESAL 120 (334)
T ss_pred ---------------------EEecCCCCeecCHHHHHHHHHHHHHHHhhcc-CCCCcEEEEeCCCCCHHHHHHHHHHHH
Confidence 1112222333444556677777776654432 222489999999999999999999999
Q ss_pred HcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHH
Q psy2902 229 IAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIID 308 (945)
Q Consensus 229 ~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~ 308 (945)
.||++.+.+++||+|||++|+... .....++|||+||||+|+++++. .. . ...+...+||.+||+.|.+
T Consensus 121 ~ag~~~~~li~ep~aaa~~~g~~~--~~~~~~lvvDiGggttdvs~v~~----~~-~----~~~~~~~lGG~~id~~l~~ 189 (334)
T PRK13927 121 GAGAREVYLIEEPMAAAIGAGLPV--TEPTGSMVVDIGGGTTEVAVISL----GG-I----VYSKSVRVGGDKFDEAIIN 189 (334)
T ss_pred HcCCCeeccCCChHHHHHHcCCcc--cCCCeEEEEEeCCCeEEEEEEec----CC-e----EeeCCcCChHHHHHHHHHH
Confidence 999999999999999999998765 34566899999999999999976 22 1 1234567999999999999
Q ss_pred HHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcc----eeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHH
Q psy2902 309 YILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQ----TEINEPYIAMSNGAPVHLNLKITRAKLELLVDELIT 384 (945)
Q Consensus 309 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~----~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~ 384 (945)
++.+++.. .. + .+.||++|+.++.... ..+.+.. .+........+.++|++|++++.+.++
T Consensus 190 ~l~~~~~~----~~--~-------~~~ae~iK~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~e~i~~~~~ 254 (334)
T PRK13927 190 YVRRNYNL----LI--G-------ERTAERIKIEIGSAYPGDEVLEMEVRG--RDLVTGLPKTITISSNEIREALQEPLS 254 (334)
T ss_pred HHHHHhCc----Cc--C-------HHHHHHHHHHhhccCCCCCCceEEEeC--cccCCCCCeEEEECHHHHHHHHHHHHH
Confidence 99876632 11 1 3568999999986432 2222211 111111245789999999999999999
Q ss_pred HHHHHHHHHHHHcCCCC--CCCC-cEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhh
Q psy2902 385 RTIEPCRIAIKDAGIKV--SDIN-DIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSV 451 (945)
Q Consensus 385 ~i~~~i~~~l~~~~~~~--~~i~-~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~ 451 (945)
++.+.+.++|+.+.... ..++ .|+|+||+|++|.++++|++.|+.++....||+++||.|||+++..
T Consensus 255 ~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 255 AIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred HHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHHHHhh
Confidence 99999999999886432 2234 5999999999999999999999999988899999999999999864
No 56
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=1.2e-32 Score=305.14 Aligned_cols=310 Identities=26% Similarity=0.360 Sum_probs=229.3
Q ss_pred eEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeC----Cc--EEecHHHHHhhhhCCCchhHHHHHhhCCCC
Q psy2902 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQEN----GE--ILVGAPAKRQAVTNPKNTIYAAKRLIGRKF 146 (945)
Q Consensus 73 viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~----~~--~~~G~~A~~~~~~~~~~~i~~~k~llg~~~ 146 (945)
-+||||||++|++++...+ .++ ..||+|+++.+ .. ..+|.+|.....+.|.+..
T Consensus 4 ~~giDlGt~~s~i~~~~~~--~~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~----------- 63 (333)
T TIGR00904 4 DIGIDLGTANTLVYVKGRG--IVL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIV----------- 63 (333)
T ss_pred eeEEecCcceEEEEECCCC--EEE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEE-----------
Confidence 3999999999998774322 333 27999999854 22 6699999876555554431
Q ss_pred CcHHHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHH
Q psy2902 147 NEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDA 226 (945)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A 226 (945)
...++.+..+...+.+..+++++..............+++|||++|+..+|+++++|
T Consensus 64 -----------------------~~~pi~~G~i~d~~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~~ 120 (333)
T TIGR00904 64 -----------------------AIRPMKDGVIADFEVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAVKES 120 (333)
T ss_pred -----------------------EEecCCCCEEEcHHHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHHHHH
Confidence 111122223334455566667666555432222224899999999999999999999
Q ss_pred HHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHH
Q psy2902 227 GRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRI 306 (945)
Q Consensus 227 a~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l 306 (945)
++.||++.+.+++||+|||++|+... ..+..++|||+|+||+|+++++. ... ...++..+||.+||+.|
T Consensus 121 ~~~ag~~~~~li~ep~aaa~~~g~~~--~~~~~~lVvDiG~gttdvs~v~~----~~~-----~~~~~~~lGG~did~~l 189 (333)
T TIGR00904 121 ALSAGAREVYLIEEPMAAAIGAGLPV--EEPTGSMVVDIGGGTTEVAVISL----GGI-----VVSRSIRVGGDEFDEAI 189 (333)
T ss_pred HHHcCCCeEEEecCHHHHHHhcCCcc--cCCceEEEEEcCCCeEEEEEEEe----CCE-----EecCCccchHHHHHHHH
Confidence 99999999999999999999998754 34567899999999999999986 221 12345679999999999
Q ss_pred HHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcce-----eeeeceeeccCCCCeEEEEEEcHHHHHHHHHH
Q psy2902 307 IDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQT-----EINEPYIAMSNGAPVHLNLKITRAKLELLVDE 381 (945)
Q Consensus 307 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~-----~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~ 381 (945)
++++.+++.. ... .+.||++|+.++..... .+.+.. .+..........++++++.+++.+
T Consensus 190 ~~~l~~~~~~----~~~---------~~~ae~lK~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~e~i~~ 254 (333)
T TIGR00904 190 INYIRRTYNL----LIG---------EQTAERIKIEIGSAYPLNDEPRKMEVRG--RDLVTGLPRTIEITSVEVREALQE 254 (333)
T ss_pred HHHHHHHhcc----cCC---------HHHHHHHHHHHhccccccccccceeecC--ccccCCCCeEEEECHHHHHHHHHH
Confidence 9999876531 111 45799999999764321 122111 110011123568999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCC-CCC-C-cEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhh
Q psy2902 382 LITRTIEPCRIAIKDAGIKV-SDI-N-DIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSV 451 (945)
Q Consensus 382 ~i~~i~~~i~~~l~~~~~~~-~~i-~-~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~ 451 (945)
.+.++.+.+.+.|+.+.... .++ + .|+|+||+|++|.++++|++.|+.++....||+++||.||++++..
T Consensus 255 ~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 255 PVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred HHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHHHHHHhC
Confidence 99999999999999876542 233 3 6999999999999999999999999998999999999999998753
No 57
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=7e-32 Score=300.47 Aligned_cols=310 Identities=25% Similarity=0.334 Sum_probs=234.5
Q ss_pred eEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeC-C-cEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcHH
Q psy2902 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQEN-G-EILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEKE 150 (945)
Q Consensus 73 viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~-~-~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~~ 150 (945)
.+||||||++++++++..+ .++ .+||+|++... + ..++|.+|.......|.+.-
T Consensus 10 ~vgiDlGt~~t~i~~~~~~--~~~-------~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~--------------- 65 (335)
T PRK13930 10 DIGIDLGTANTLVYVKGKG--IVL-------NEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIE--------------- 65 (335)
T ss_pred ceEEEcCCCcEEEEECCCC--EEE-------ecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeE---------------
Confidence 4999999999999886332 232 25999999753 2 36899999876554443321
Q ss_pred HHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHHHc
Q psy2902 151 VQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIA 230 (945)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~A 230 (945)
...++....+...+.+..+|+++.+.+..........+++|+|++|+..+|+++.+|++.+
T Consensus 66 -------------------~~~pi~~G~i~d~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~~e~~ 126 (335)
T PRK13930 66 -------------------AIRPLKDGVIADFEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAAEHA 126 (335)
T ss_pred -------------------EeecCCCCeEcCHHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHHHHHc
Confidence 0112222333445677888888887765544445678999999999999999999999999
Q ss_pred CCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHH
Q psy2902 231 GLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYI 310 (945)
Q Consensus 231 Gl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l 310 (945)
|++.+.+++||+|||++++... .....++|||+|+||+|++++... . .+ ..+...+||.+||+.|.+++
T Consensus 127 g~~~~~lv~ep~AAa~a~g~~~--~~~~~~lVvDiG~gttdvs~v~~g----~-~~----~~~~~~lGG~~id~~l~~~l 195 (335)
T PRK13930 127 GAREVYLIEEPMAAAIGAGLPV--TEPVGNMVVDIGGGTTEVAVISLG----G-IV----YSESIRVAGDEMDEAIVQYV 195 (335)
T ss_pred CCCeEEecccHHHHHHhcCCCc--CCCCceEEEEeCCCeEEEEEEEeC----C-EE----eecCcCchhHHHHHHHHHHH
Confidence 9999999999999999998754 234567999999999999999762 1 11 24567899999999999999
Q ss_pred HHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcce----eeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHH
Q psy2902 311 LDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQT----EINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRT 386 (945)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~----~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i 386 (945)
.+++. ... + ...||++|+.++..... .+.+.. .+........+.+++++|++++.+.++++
T Consensus 196 ~~~~~----~~~--~-------~~~ae~~K~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~e~i~~~~~~i 260 (335)
T PRK13930 196 RRKYN----LLI--G-------ERTAEEIKIEIGSAYPLDEEESMEVRG--RDLVTGLPKTIEISSEEVREALAEPLQQI 260 (335)
T ss_pred HHHhC----CCC--C-------HHHHHHHHHHhhcCcCCCCCceEEEEC--ccCCCCCCeeEEECHHHHHHHHHHHHHHH
Confidence 87653 111 1 35789999999865432 122211 11111123478899999999999999999
Q ss_pred HHHHHHHHHHcCCCC--CCCCc-EEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhh
Q psy2902 387 IEPCRIAIKDAGIKV--SDIND-IILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSV 451 (945)
Q Consensus 387 ~~~i~~~l~~~~~~~--~~i~~-ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~ 451 (945)
.+.+.++|+.+.... ..++. |+|+||+|++|.++++|++.|+.++....+|++++|.|||+.+..
T Consensus 261 ~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~~~~~ 328 (335)
T PRK13930 261 VEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKALEN 328 (335)
T ss_pred HHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhC
Confidence 999999999875332 23454 999999999999999999999999888889999999999999864
No 58
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.97 E-value=8.8e-31 Score=280.92 Aligned_cols=309 Identities=29% Similarity=0.409 Sum_probs=224.1
Q ss_pred eEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCC--cEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcHH
Q psy2902 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENG--EILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEKE 150 (945)
Q Consensus 73 viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~--~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~~ 150 (945)
-+||||||+++.++. .+.-.++. .||+|+++.+. -..+|.+|.....+.|.+.
T Consensus 3 ~igIDLGT~~t~i~~--~~~Giv~~-------epSvVA~~~~~~~i~avG~~A~~m~gktp~~i---------------- 57 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYV--KGKGIVLN-------EPSVVAYDKDTGKILAVGDEAKAMLGKTPDNI---------------- 57 (326)
T ss_dssp EEEEEE-SSEEEEEE--TTTEEEEE-------EES-EEEETTT--EEEESHHHHTTTTS-GTTE----------------
T ss_pred ceEEecCcccEEEEE--CCCCEEEe-------cCcEEEEECCCCeEEEEhHHHHHHhhcCCCcc----------------
Confidence 499999999998733 22222222 29999998753 2448999986655554432
Q ss_pred HHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHHHc
Q psy2902 151 VQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIA 230 (945)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~A 230 (945)
.+..++.+..+...+++..+|+++.+.+.......-..++++||+..++.+|+++.+|+..|
T Consensus 58 ------------------~~~~Pl~~GvI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~~a 119 (326)
T PF06723_consen 58 ------------------EVVRPLKDGVIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAARQA 119 (326)
T ss_dssp ------------------EEE-SEETTEESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHT
T ss_pred ------------------EEEccccCCcccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHc
Confidence 13445566777788999999999999887643445678999999999999999999999999
Q ss_pred CCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHH
Q psy2902 231 GLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYI 310 (945)
Q Consensus 231 Gl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l 310 (945)
|...+.+++||.|||+..+.+- ..+...||+|+||||||++++.. .+.+.- .....||++||+++.+|+
T Consensus 120 Ga~~V~li~ep~AaAiGaGl~i--~~~~g~miVDIG~GtTdiavisl-----ggiv~s----~si~~gG~~~DeaI~~~i 188 (326)
T PF06723_consen 120 GARKVYLIEEPIAAAIGAGLDI--FEPRGSMIVDIGGGTTDIAVISL-----GGIVAS----RSIRIGGDDIDEAIIRYI 188 (326)
T ss_dssp T-SEEEEEEHHHHHHHHTT--T--TSSS-EEEEEE-SS-EEEEEEET-----TEEEEE----EEES-SHHHHHHHHHHHH
T ss_pred CCCEEEEecchHHHHhcCCCCC--CCCCceEEEEECCCeEEEEEEEC-----CCEEEE----EEEEecCcchhHHHHHHH
Confidence 9999999999999999998876 45677899999999999999985 222211 123569999999999999
Q ss_pred HHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcc----eeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHH
Q psy2902 311 LDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQ----TEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRT 386 (945)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~----~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i 386 (945)
+++|.-..+ ...||++|+.+++... ..+.+. ..+......-.+.++-+++.+++.+.+..+
T Consensus 189 r~~y~l~Ig-------------~~tAE~iK~~~g~~~~~~~~~~~~v~--Grd~~tGlP~~~~i~~~ev~~ai~~~~~~I 253 (326)
T PF06723_consen 189 REKYNLLIG-------------ERTAEKIKIEIGSASPPEEEESMEVR--GRDLITGLPKSIEITSSEVREAIEPPVDQI 253 (326)
T ss_dssp HHHHSEE---------------HHHHHHHHHHH-BSS--HHHHEEEEE--EEETTTTCEEEEEEEHHHHHHHHHHHHHHH
T ss_pred HHhhCcccC-------------HHHHHHHHHhcceeeccCCCceEEEE--CccccCCCcEEEEEcHHHHHHHHHHHHHHH
Confidence 999864333 6689999999987532 223332 222223346689999999999999999999
Q ss_pred HHHHHHHHHHcCCCC-CCC--CcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhh
Q psy2902 387 IEPCRIAIKDAGIKV-SDI--NDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGS 450 (945)
Q Consensus 387 ~~~i~~~l~~~~~~~-~~i--~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~ 450 (945)
.+.|+++|+....+. .|| +.|+|+||+|+++.+.+.|++.++.++....+|.++||.||.....
T Consensus 254 ~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 254 VEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHHHh
Confidence 999999999864432 133 4699999999999999999999999999999999999999987654
No 59
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.96 E-value=1.6e-27 Score=243.53 Aligned_cols=314 Identities=26% Similarity=0.371 Sum_probs=240.5
Q ss_pred ceEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeC--Cc--EEecHHHHHhhhhCCCchhHHHHHhhCCCCC
Q psy2902 72 KIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQEN--GE--ILVGAPAKRQAVTNPKNTIYAAKRLIGRKFN 147 (945)
Q Consensus 72 ~viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~--~~--~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~ 147 (945)
.-+|||+||.|+.|..- +. -++.+ -||+|+++.. .. ..+|.+|+...-+.|.+.
T Consensus 7 ~diGIDLGTanTlV~~k--~k-gIVl~------ePSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni------------- 64 (342)
T COG1077 7 NDIGIDLGTANTLVYVK--GK-GIVLN------EPSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNI------------- 64 (342)
T ss_pred ccceeeecccceEEEEc--Cc-eEEec------CceEEEEeecCCCceEEEehHHHHHHhccCCCCc-------------
Confidence 35999999999998554 22 24443 3999999873 22 347888865544444432
Q ss_pred cHHHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhC-CCCCcEEEEcCCCCCHHHHHHHHHH
Q psy2902 148 EKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLG-GEITEAVITVPAYFNDAQRQATKDA 226 (945)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~-~~~~~~VitVPa~~~~~qr~~l~~A 226 (945)
.+.-++.+..+...+++..+|+|+.+....... .....++++||..-++.+|+++++|
T Consensus 65 ---------------------~aiRPmkdGVIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea 123 (342)
T COG1077 65 ---------------------VAIRPMKDGVIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEA 123 (342)
T ss_pred ---------------------eEEeecCCcEeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHH
Confidence 244556677788889999999999998864433 4455799999999999999999999
Q ss_pred HHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHH
Q psy2902 227 GRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRI 306 (945)
Q Consensus 227 a~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l 306 (945)
++.||...+.++.||.|||+..+..-. .+..-+|||+||||+|++++++........+ .+||+.||+++
T Consensus 124 ~~~aGa~~V~lieEp~aAAIGaglpi~--ep~G~mvvDIGgGTTevaVISlggiv~~~Si---------rv~GD~~De~I 192 (342)
T COG1077 124 AESAGAREVYLIEEPMAAAIGAGLPIM--EPTGSMVVDIGGGTTEVAVISLGGIVSSSSV---------RVGGDKMDEAI 192 (342)
T ss_pred HHhccCceEEEeccHHHHHhcCCCccc--CCCCCEEEEeCCCceeEEEEEecCEEEEeeE---------EEecchhhHHH
Confidence 999999999999999999999887653 3445688999999999999998443323333 35999999999
Q ss_pred HHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcce----eeeeceeeccCCCCeEEEEEEcHHHHHHHHHHH
Q psy2902 307 IDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQT----EINEPYIAMSNGAPVHLNLKITRAKLELLVDEL 382 (945)
Q Consensus 307 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~----~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~ 382 (945)
.+|++++|+-..+ ...+|++|......... ....+....+.-....-.++++-+++.+++++.
T Consensus 193 i~yvr~~~nl~IG-------------e~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal~~~ 259 (342)
T COG1077 193 IVYVRKKYNLLIG-------------ERTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEALEEP 259 (342)
T ss_pred HHHHHHHhCeeec-------------HHHHHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHHHHHHHH
Confidence 9999999875544 44689999988765331 111222222211122446899999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCC-C-CCc-EEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhc
Q psy2902 383 ITRTIEPCRIAIKDAGIKVS-D-IND-IILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVL 452 (945)
Q Consensus 383 i~~i~~~i~~~l~~~~~~~~-~-i~~-ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~ 452 (945)
++.+.+.++..|+....+.. | ++. ++|+||+|.+..+.+.+++..+.++....+|.+|||.|+.+....+
T Consensus 260 v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et~~pv~ia~~pL~~Va~G~G~~le~~ 332 (342)
T COG1077 260 LNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEETGVPVIIADDPLTCVAKGTGKALEAL 332 (342)
T ss_pred HHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhccCCeEEECCChHHHHHhccchhhhhh
Confidence 99999999999998654321 2 344 9999999999999999999999999999999999999998877644
No 60
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.95 E-value=5e-27 Score=245.17 Aligned_cols=206 Identities=24% Similarity=0.320 Sum_probs=175.1
Q ss_pred CeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCccceecchhHHHHHHhccCCCCC
Q psy2902 176 GKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFGLDKSGK 255 (945)
Q Consensus 176 ~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~ 255 (945)
+..+...+.++++|+++++.++.+++..+.++|+|||++|++.||+++.+|++.||++++.++.||.|||++|+..
T Consensus 33 ~g~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~---- 108 (239)
T TIGR02529 33 DGIVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK---- 108 (239)
T ss_pred CCeEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC----
Confidence 3445667889999999999999999888999999999999999999999999999999999999999999998643
Q ss_pred CCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHH
Q psy2902 256 SDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKAS 335 (945)
Q Consensus 256 ~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ 335 (945)
..+|+|+||||+|+++++. +.+. . ..+..+||++||+.|.+.+. .+ ..+
T Consensus 109 ---~~~vvDiGggtt~i~i~~~------G~i~--~-~~~~~~GG~~it~~Ia~~~~--------i~-----------~~~ 157 (239)
T TIGR02529 109 ---NGAVVDVGGGTTGISILKK------GKVI--Y-SADEPTGGTHMSLVLAGAYG--------IS-----------FEE 157 (239)
T ss_pred ---CcEEEEeCCCcEEEEEEEC------CeEE--E-EEeeecchHHHHHHHHHHhC--------CC-----------HHH
Confidence 2599999999999999864 2221 1 33567899999998865432 22 468
Q ss_pred HHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccc
Q psy2902 336 AERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTR 415 (945)
Q Consensus 336 ~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ 415 (945)
||++|+.++. .+++.+++.+.++++.+.+.+.|++.+ ++.|+|+||+|+
T Consensus 158 AE~~K~~~~~--------------------------~~~~~~~i~~~~~~i~~~i~~~l~~~~-----~~~v~LtGG~a~ 206 (239)
T TIGR02529 158 AEEYKRGHKD--------------------------EEEIFPVVKPVYQKMASIVKRHIEGQG-----VKDLYLVGGACS 206 (239)
T ss_pred HHHHHHhcCC--------------------------HHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCEEEEECchhc
Confidence 8999986541 356778999999999999999998653 579999999999
Q ss_pred cHHHHHHHHHHhCCCCCCCCCCCchhhhhHHH
Q psy2902 416 MPKVQEKVKEFFGKDPRRDINPDEAVAVGAAI 447 (945)
Q Consensus 416 ~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~ 447 (945)
+|.+++.+++.|+.++..+.||++++|.|||+
T Consensus 207 ipgl~e~l~~~lg~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 207 FSGFADVFEKQLGLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred chhHHHHHHHHhCCCcccCCCCCeehhheeec
Confidence 99999999999999999899999999999986
No 61
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.93 E-value=3.6e-24 Score=227.87 Aligned_cols=203 Identities=27% Similarity=0.368 Sum_probs=173.6
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCccceecchhHHHHHHhccCCCCCCCceE
Q psy2902 181 PPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNI 260 (945)
Q Consensus 181 ~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~v 260 (945)
..+.+...|+++++.++.+++..+..++++||++|+..++.++.+|++.||++...+++||.|++.+|.... .
T Consensus 65 di~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~~-------~ 137 (267)
T PRK15080 65 DFIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGIDN-------G 137 (267)
T ss_pred eHHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCCC-------c
Confidence 357777899999999999988889999999999999999999999999999999999999999999875431 5
Q ss_pred EEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHH
Q psy2902 261 VVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAK 340 (945)
Q Consensus 261 lVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K 340 (945)
+++|+||||||++++.- +.+. . ..+..+||.+||+.|++++. .+ .++||++|
T Consensus 138 ~vvDIGggtt~i~v~~~------g~~~--~-~~~~~~GG~~it~~Ia~~l~--------i~-----------~~eAE~lK 189 (267)
T PRK15080 138 AVVDIGGGTTGISILKD------GKVV--Y-SADEPTGGTHMSLVLAGAYG--------IS-----------FEEAEQYK 189 (267)
T ss_pred EEEEeCCCcEEEEEEEC------CeEE--E-EecccCchHHHHHHHHHHhC--------CC-----------HHHHHHHH
Confidence 89999999999999863 2221 1 24678999999999987652 11 46788888
Q ss_pred HHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHH
Q psy2902 341 IELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQ 420 (945)
Q Consensus 341 ~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~ 420 (945)
+.++ +++++.+++++.++++.+.+++.++.. +++.|+|+||+|++|.++
T Consensus 190 ~~~~--------------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~ 238 (267)
T PRK15080 190 RDPK--------------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFE 238 (267)
T ss_pred hccC--------------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHH
Confidence 7642 246788999999999999999999864 468999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCchhhhhHHHhh
Q psy2902 421 EKVKEFFGKDPRRDINPDEAVAVGAAIQG 449 (945)
Q Consensus 421 ~~l~~~fg~~~~~~~~p~~avA~GAa~~a 449 (945)
+.+++.|+.++....+|+.++|.|||+++
T Consensus 239 e~l~~~lg~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 239 EVFEKQTGLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred HHHHHHhCCCcccCCCchHHHHHHHHhhC
Confidence 99999999999989999999999999874
No 62
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.93 E-value=1.6e-25 Score=251.23 Aligned_cols=160 Identities=21% Similarity=0.232 Sum_probs=138.5
Q ss_pred CccceeeccccccccccceeeEeeccccccCCCCCccccccCcCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEEe
Q psy2902 689 GKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVI 768 (945)
Q Consensus 689 g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~ 768 (945)
..++...++++|+++|.|+++.+.+.+...| |.|
T Consensus 656 ~~dI~y~l~vtLEeLY~G~tKkIKitR~V~~----g~G------------------------------------------ 689 (871)
T TIGR03835 656 NVNLVYEEEVPQILFFNNQIKEIKYTRHTVD----GNT------------------------------------------ 689 (871)
T ss_pred ccceEEecccCHHHHhCCCeEEEEEEEeecc----CCC------------------------------------------
Confidence 4688899999999999999999988664432 111
Q ss_pred ecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHH
Q psy2902 769 PHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFST 848 (945)
Q Consensus 769 ~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~e 848 (945)
.....+.++++|+||+|+++|++|+|+|+|++.+++ .|||||+|++++|+.|+|+|+|||+.++|+|.+
T Consensus 690 ---------~ktvkE~ktLeVkIPpGVkdGqkIRf~GeGDegpgg--~GDLyVvIkVKPHp~FrRdGdDL~~~v~ISL~E 758 (871)
T TIGR03835 690 ---------ESTTNEAITLEIQLPITSQLNISAIFKGFGHDFGNG--CGDLKVVFKVIPSNFFQIKNDGLHVAALVDPLV 758 (871)
T ss_pred ---------cceeeeeEEEEEecCCCCCCCCEEEeccccCCCCCC--CCCEEEEEEEcCCCCeEEECCeEEEEEecCHHH
Confidence 112234568999999999999999999999986443 499999999999999999999999999999999
Q ss_pred HhcCCeEEEecCCCeEEEEeCCCCCCCcEEEECCCCcCCCCCCCCccEEEEEEEE-CCC
Q psy2902 849 AALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIE-TPV 906 (945)
Q Consensus 849 al~G~~~~v~~l~g~~~~~i~~~~~~g~~~~i~g~G~~~~~~~~~Gdl~v~~~i~-~p~ 906 (945)
||+|+++.|+||||++.+.||+++++|+++||+|+|||.. ++.+|||||+|.|. +++
T Consensus 759 ALLGgtIeIpTLDGrVkLkIPpgTqpGqvLRIkGKGMP~~-~~~RGDLyV~f~V~~~~k 816 (871)
T TIGR03835 759 AYNGGIIDVFGPNKLFNVRIPGGIKVNDQVIFKDLGLTKT-KYDKGSLIVHLYYSSVMK 816 (871)
T ss_pred HhcCCEEEeeCCCCCEEEeeCCCCCCCcEEEECCCCCCCC-CCCCCCEEEEEEEeeccc
Confidence 9999999999999998889999999999999999999964 35689999999998 454
No 63
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.9e-25 Score=234.97 Aligned_cols=224 Identities=26% Similarity=0.459 Sum_probs=170.1
Q ss_pred HHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCC-CCCCCCcccccccccccccccccccC
Q psy2902 596 DKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDP-NMSGSSASAEASNFADAFGDIFGDIF 674 (945)
Q Consensus 596 d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~-~~~g~~~~~~~~~f~d~f~~~F~~~~ 674 (945)
++.+++++.++|++...+.+.+++. +||.++.+.-. ..|+.+ +++++++ .+++-|+++|+...++-
T Consensus 40 ~~~AeeKFKEI~eAYEVLsD~eKRa----~YD~fG~~~~~-------~gg~gg~g~~~fgg-~~~DIF~~~FgGg~~~~- 106 (371)
T COG0484 40 DKEAEEKFKEINEAYEVLSDPEKRA----AYDQFGHAGFK-------AGGFGGFGFGGFGG-DFGDIFEDFFGGGGGGR- 106 (371)
T ss_pred CHHHHHHHHHHHHHHHHhCCHHHHH----HhhccCccccc-------cCCcCCCCcCCCCC-CHHHHHHHhhcCCCccc-
Confidence 5666777778888888888777764 58888866544 122222 2333332 45677889995433222
Q ss_pred CCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccc-------------cccCCCCCccccccCc-------Ccc
Q psy2902 675 GSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS-------------WDICKSCYGNGAKKGT-------SPI 734 (945)
Q Consensus 675 g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~-------------~~~C~~C~G~G~~~~~-------~~~ 734 (945)
...+ +.+++.+...+++++|++.+.+.....+......| ..+|+.|+|+|..... .++
T Consensus 107 ~~~~--~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~ 184 (371)
T COG0484 107 RRPN--RPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQ 184 (371)
T ss_pred CCCC--CcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEE
Confidence 2221 24577889999999999999887766666666554 4899999999985433 588
Q ss_pred cCCCCCCCceEeEeeceeeeeecCCCCCCceEE--------------------------------------------eec
Q psy2902 735 SCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKV--------------------------------------------IPH 770 (945)
Q Consensus 735 ~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~--------------------------------------------~~~ 770 (945)
+|+.|+|+|++ +.++|+.|+|.|++ .+|
T Consensus 185 ~C~~C~G~G~~--------i~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ir~~g~G~~g~~Ggp~GDLyv~i~v~~h 256 (371)
T COG0484 185 TCPTCNGTGKI--------IKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAGPNGGPAGDLYVFVHVKPH 256 (371)
T ss_pred ECCCCccceeE--------CCCCCCCCCCCCeEeeeeEEEEECCCCCccCCEEEEecCcccCCCCCCCccEEEEEEeecC
Confidence 99999999999 89999999999972 679
Q ss_pred CCcccCCC---------------ceEeeeeeE----EEEeecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCCcc
Q psy2902 771 PCLDCNGI---------------GRIKRNKTL----EVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVF 831 (945)
Q Consensus 771 ~c~~c~G~---------------g~~~~~~~l----~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~ 831 (945)
+.|.|.|. |...+.++| +|+||+|+++|++++++|+|||..++...|||||+|+|..|..+
T Consensus 257 ~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~~~l~ip~Gtq~G~~~rl~gkG~p~~~~~~~GDl~v~v~v~~P~~l 336 (371)
T COG0484 257 PIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRVKLKIPAGTQTGEVFRLRGKGMPKLRSGGRGDLYVRVKVETPKNL 336 (371)
T ss_pred CCeEECCCceEeccccCHHHHhcCCEEEEEecCCCEEEecCCCCccCcEEEEcCCCccccCCCCcCCEEEEEEEEcCCCC
Confidence 99999994 444444444 89999999999999999999999888888999999999999999
Q ss_pred cccCCCceeEE
Q psy2902 832 ERDGDDLHYEM 842 (945)
Q Consensus 832 ~r~g~dl~~~~ 842 (945)
+.++.+|+.++
T Consensus 337 s~~q~~lL~~~ 347 (371)
T COG0484 337 SDEQKELLEEF 347 (371)
T ss_pred CHHHHHHHHHH
Confidence 98887776544
No 64
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1e-21 Score=217.12 Aligned_cols=171 Identities=25% Similarity=0.413 Sum_probs=135.0
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccc-------------cccCCCCCccc
Q psy2902 660 SNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS-------------WDICKSCYGNG 726 (945)
Q Consensus 660 ~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~-------------~~~C~~C~G~G 726 (945)
+.|+++|+...+... ... ..++.+...++.++|++.+.+.....+......| ...|+.|+|+|
T Consensus 98 d~f~~~fgg~~~~~~-~~~---~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G 173 (365)
T PRK14285 98 DIFDSFFTGNRGQDK-NRK---HEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTSPSICNMCNGSG 173 (365)
T ss_pred HHHHHhhcCCcCCCC-CcC---CCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCcccCCCCCCccCCCccCce
Confidence 446677764333222 211 2356788999999999999999888888777665 36899999999
Q ss_pred cccC-----cCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEE----------------------------------
Q psy2902 727 AKKG-----TSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKV---------------------------------- 767 (945)
Q Consensus 727 ~~~~-----~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~---------------------------------- 767 (945)
.... +.+++|+.|+|.|++ +..+|+.|+|+|.+
T Consensus 174 ~~~~~~G~~~~~~~C~~C~G~G~~--------~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~ 245 (365)
T PRK14285 174 RVMQGGGFFRVTTTCPKCYGNGKI--------ISNPCKSCKGKGSLKKKETIELKIPAGIDDNQQIKMRGKGSVNPDNQQ 245 (365)
T ss_pred eEEecCceeEEeeecCCCCCcccc--------cCCCCCCCCCCCEEeccEEEEEEECCCCCCCCEEEEeeccccCCCCCC
Confidence 7643 357899999999998 78899999999962
Q ss_pred ----------eecCCcccCCCceEee--------------------eeeEEEEeecCCCCCeEEEEcCCCCCCCCCCCCc
Q psy2902 768 ----------IPHPCLDCNGIGRIKR--------------------NKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNG 817 (945)
Q Consensus 768 ----------~~~~c~~c~G~g~~~~--------------------~~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~G 817 (945)
.+|+-|+|+|..+..+ .++++|+||+|+++|++++|+|+|+|.++...+|
T Consensus 246 ~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~g~~~g~~irl~GkG~p~~~~~~~G 325 (365)
T PRK14285 246 YGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKGTENDEQIIIKNEGMPILHTEKFG 325 (365)
T ss_pred CCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCCCcCCCcEEEECCCCccCCCCCCCC
Confidence 6788999999544443 2456899999999999999999999977655679
Q ss_pred cEEEEEEEecCCcccccCCCceeEE
Q psy2902 818 NLYIEIHIKPHKVFERDGDDLHYEM 842 (945)
Q Consensus 818 dl~i~i~v~~~~~~~r~g~dl~~~~ 842 (945)
||||+|+|.+|+.|++++..++.++
T Consensus 326 DL~V~~~v~~P~~l~~~q~~~l~~l 350 (365)
T PRK14285 326 NLILIIKIKTPKNLNSNAIKLLENL 350 (365)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999999999887665543
No 65
>KOG0713|consensus
Probab=99.85 E-value=7.7e-22 Score=203.26 Aligned_cols=298 Identities=27% Similarity=0.364 Sum_probs=211.3
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCCCc
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSA 655 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~~~ 655 (945)
.-|+.||.++.++++...++|+ |+-+. ++..+|++|+.||++|||+++|+.||.+|+.|+.+...++.+
T Consensus 27 ~Asd~eIKkAYRKLALk~HPDk---------Npddp--~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~~~~~~ 95 (336)
T KOG0713|consen 27 NASDQEIKKAYRKLALKYHPDK---------NPDDP--NANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDENKDGEG 95 (336)
T ss_pred CCCHHHHHHHHHHHHHHhCCCC---------CCCCH--HHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhccccccccc
Confidence 3578999999999999888884 44433 345689999999999999999999999999998854211111
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCcccc-ccCcCcc
Q psy2902 656 SAEASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGA-KKGTSPI 734 (945)
Q Consensus 656 ~~~~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~-~~~~~~~ 734 (945)
+..+ .++|+.+|+.|+...++.........|.++...++.++++.|.+..........+.|+. .|+-. .-.....
T Consensus 96 g~~~---~~~f~~~f~dfg~~~~g~~~~e~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~~-~g~~~~~~~~~~~ 171 (336)
T KOG0713|consen 96 GGGG---NDIFSAFFGDFGVTVGGNPLEEALPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKPA-PGTRKCNCRLEMF 171 (336)
T ss_pred CCcc---cchHHHhhcccccccCCCcccCCCCCCceEEeehhhchhhhhcccHHHHHhccCceeec-CcccccCChhhhe
Confidence 1111 36677777665322111111222456788888888888888765433332222222211 00000 0000112
Q ss_pred cCCCCCCCceEeEeeceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCCCCCCCC
Q psy2902 735 SCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLNGG 814 (945)
Q Consensus 735 ~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~ 814 (945)
+|..|.|.... ++ ...|..|.+.++..+..++++.+..|...|....+..+|.|+.- +
T Consensus 172 ~~~~~~g~~~~--------~q-------------~~~~~~~~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~ 229 (336)
T KOG0713|consen 172 TQQEGPGRFQM--------LQ-------------EAVCDECPNVKLVLEEDPLEVEFERGDADGPEEIFELEGEPHID-G 229 (336)
T ss_pred eeccCCChhhh--------hh-------------hhhhccCCccceeecCCceeeeeeecccCCceeeeeccCCccee-c
Confidence 22333333322 11 12344444456667778899999999999999999999999765 6
Q ss_pred CCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeE-EEEeCCCCCCCcEEEECCCCcCCCCC-CC
Q psy2902 815 SNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKA-FFVIPEGTQSGKIFRLRGKGIKNIRS-SI 892 (945)
Q Consensus 815 ~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~-~~~i~~~~~~g~~~~i~g~G~~~~~~-~~ 892 (945)
.+||+++.+..-+|+.|.+++.++++.+.+++.+++.|+..++.++|+.. .+....++.|+..++.+++|||.... ..
T Consensus 230 ~~gD~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~~~~d~~~~~~~r~~~~~p~~~~~~~~~~~~~l~~~~~ 309 (336)
T KOG0713|consen 230 VPGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEILHLDGHYVEVSRKKITWPGARTRKKGEGMPLLKNRNE 309 (336)
T ss_pred ccCCceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHhhccchhhhhhhhhhccccchhhhhhhccchhhhccch
Confidence 79999999999999999999999999999999999999999999999965 45566789999999999999997654 56
Q ss_pred CccEEEEEEEECCC-CCCH
Q psy2902 893 PGDLFCHVTIETPV-QLTE 910 (945)
Q Consensus 893 ~Gdl~v~~~i~~p~-~l~~ 910 (945)
-|.+|++|.+.+|. .++.
T Consensus 310 ~~~~~~t~~~~~~~~~~~~ 328 (336)
T KOG0713|consen 310 KGNLYVTFDVEFPKSSLSD 328 (336)
T ss_pred hcceeEEecccCcccccch
Confidence 79999999999994 4666
No 66
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.3e-21 Score=217.01 Aligned_cols=152 Identities=25% Similarity=0.456 Sum_probs=128.5
Q ss_pred CCCCCCCccceeeccccccccccceeeEeecccc-------------ccCCCCCccccccC---------cCcccCCCCC
Q psy2902 683 NNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSW-------------DICKSCYGNGAKKG---------TSPISCFTCS 740 (945)
Q Consensus 683 ~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~-------------~~C~~C~G~G~~~~---------~~~~~C~~C~ 740 (945)
.++.+...++.++|++.+.+.....+......|. .+|+.|+|+|.... ..+++|+.|+
T Consensus 112 ~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~ 191 (377)
T PRK14298 112 RRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCH 191 (377)
T ss_pred CCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCC
Confidence 4567889999999999999999888888877663 78999999997643 2467999999
Q ss_pred CCceEeEeeceeeeeecCCCCCCceEE--------------------------------------------eecCCcccC
Q psy2902 741 GQGQVRMQQGFFSIQQTCPKCQGAGKV--------------------------------------------IPHPCLDCN 776 (945)
Q Consensus 741 G~G~~~~~~~~~~~~~~C~~C~G~g~~--------------------------------------------~~~~c~~c~ 776 (945)
|+|++ +..+|+.|+|+|.+ .+|+.|+|.
T Consensus 192 G~G~~--------~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~ 263 (377)
T PRK14298 192 GRGQV--------IESPCPVCSGTGKVRKTRKITVNVPAGADSGLRLKLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERV 263 (377)
T ss_pred CCCcc--------cCCCCCCCCCccEEEEEEEEEecCCCCCCCCCEEEEecccCCCCCCCCCcCEEEEEEEecCCCeEEE
Confidence 99998 78899999999972 679999999
Q ss_pred CCceEee---------------e----eeEEEEeecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCC
Q psy2902 777 GIGRIKR---------------N----KTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDD 837 (945)
Q Consensus 777 G~g~~~~---------------~----~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~d 837 (945)
|.++..+ . ..++|+||+|+++|++++++|+|+|..+++.+|||||+|+|.+|+.|++++.+
T Consensus 264 G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~~lri~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~~~~ 343 (377)
T PRK14298 264 GDDIISEIPISFTQAALGADIMVPTLYGKVKMNIPPGTQTHSVFRLKDKGMPRLHGHGKGDQLVKVIVKTPTKLTQEQKE 343 (377)
T ss_pred cCcEEEEEEeCHHHHhCCCeEEEecCCCCEEEEeCCCcccCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHH
Confidence 9555444 2 22579999999999999999999997665568999999999999999999988
Q ss_pred ceeEE
Q psy2902 838 LHYEM 842 (945)
Q Consensus 838 l~~~~ 842 (945)
++.++
T Consensus 344 ll~~l 348 (377)
T PRK14298 344 LLREF 348 (377)
T ss_pred HHHHH
Confidence 77654
No 67
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.84 E-value=3.5e-19 Score=200.61 Aligned_cols=195 Identities=21% Similarity=0.339 Sum_probs=152.5
Q ss_pred HHHHHHHHHHHHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCC
Q psy2902 217 DAQRQATKDAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTF 296 (945)
Q Consensus 217 ~~qr~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~ 296 (945)
....+.+.+|++.|||++..++.||.|+|++|.... .....++|+|+|+||+|++++.- +.+.. .....
T Consensus 157 ~~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~--~~~~~~~vvDiG~gtt~i~i~~~------g~~~~---~~~i~ 225 (371)
T TIGR01174 157 STILRNLVKCVERCGLEVDNIVLSGLASAIAVLTED--EKELGVCLIDIGGGTTDIAVYTG------GSIRY---TKVIP 225 (371)
T ss_pred HHHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcc--hhcCCEEEEEeCCCcEEEEEEEC------CEEEE---Eeeec
Confidence 455678889999999999999999999999986543 34567999999999999999964 22211 22356
Q ss_pred CchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCc------ceeeeeceeeccCCCCeEEEEEE
Q psy2902 297 LGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSK------QTEINEPYIAMSNGAPVHLNLKI 370 (945)
Q Consensus 297 lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~------~~~i~i~~~~~~~~~~~~~~~~i 370 (945)
+||++||+.+.+.+. ...++||++|+.++... ...+.++... .+....+
T Consensus 226 ~GG~~it~~i~~~l~-------------------~~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~i 280 (371)
T TIGR01174 226 IGGNHITKDIAKALR-------------------TPLEEAERIKIKYGCASIPLEGPDENIEIPSVG------ERPPRSL 280 (371)
T ss_pred chHHHHHHHHHHHhC-------------------CCHHHHHHHHHHeeEecccCCCCCCEEEeccCC------CCCCeEE
Confidence 899999998875431 12668999999998642 3344444332 1456899
Q ss_pred cHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCCc-EEEecCccccHHHHHHHHHHhCCCCCC------------CCC
Q psy2902 371 TRAKLELLVDELITRTIEPCR-IAIKDAGIKVSDIND-IILVGGMTRMPKVQEKVKEFFGKDPRR------------DIN 436 (945)
Q Consensus 371 tr~~~e~~~~~~i~~i~~~i~-~~l~~~~~~~~~i~~-ViLvGG~s~~p~v~~~l~~~fg~~~~~------------~~~ 436 (945)
+|++|++++++.++++.+.+. +.|++++.. .+++. |+|+||+|++|.+++.+++.|+.++.. ..+
T Consensus 281 s~~~l~~ii~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P~~~~~~~~~~~~ 359 (371)
T TIGR01174 281 SRKELAEIIEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLPQNIGGLTEDVND 359 (371)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEECCCccCCchhhcCC
Confidence 999999999999999999997 999998776 56777 999999999999999999999876531 126
Q ss_pred CCchhhhhHHHh
Q psy2902 437 PDEAVAVGAAIQ 448 (945)
Q Consensus 437 p~~avA~GAa~~ 448 (945)
|..++|.|.++|
T Consensus 360 p~~~~a~Gl~~~ 371 (371)
T TIGR01174 360 PEYSTAVGLLLY 371 (371)
T ss_pred cHHHHHHHHHhC
Confidence 777888888764
No 68
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=3.4e-21 Score=213.29 Aligned_cols=173 Identities=17% Similarity=0.334 Sum_probs=135.6
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccc------------cccCCCCCccccc
Q psy2902 661 NFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS------------WDICKSCYGNGAK 728 (945)
Q Consensus 661 ~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~------------~~~C~~C~G~G~~ 728 (945)
+|.++|+++||+...+.+.....++.+....+.++|++.+.+.....+......| ..+|+.|+|+|..
T Consensus 89 ~~~~~F~~~fg~g~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~ 168 (369)
T PRK14288 89 DLGSFFEDAFGFGARGSKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDKALETCKQCNGQGQV 168 (369)
T ss_pred hHHHHHHhhcCCCCcccCcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCCCCcCCCCCCCCcEE
Confidence 5677888888743212111223467788999999999999998877777766554 4789999999976
Q ss_pred cC-----cCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEE------------------------------------
Q psy2902 729 KG-----TSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKV------------------------------------ 767 (945)
Q Consensus 729 ~~-----~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~------------------------------------ 767 (945)
.. ...++|+.|+|+|++ +..+|+.|+|.|++
T Consensus 169 ~~~~g~~~~~~~C~~C~G~G~~--------~~~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l~g~G~~~~~~~~GD 240 (369)
T PRK14288 169 FMRQGFMSFAQTCGACQGKGKI--------IKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKGNEYEKGKRGD 240 (369)
T ss_pred EEEeceEEEEEecCCCCCCceE--------ccccCccCCCcceEEEEEEEEEecCCCCCCCCEEEEccCccCCCCCCCCC
Confidence 42 246699999999998 78889999999862
Q ss_pred -------eecCCcccCCCceEee--------------------eeeEEEEeecCCCCCeEEEEcCCCCCCCCCCCCccEE
Q psy2902 768 -------IPHPCLDCNGIGRIKR--------------------NKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLY 820 (945)
Q Consensus 768 -------~~~~c~~c~G~g~~~~--------------------~~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl~ 820 (945)
.+|+-|+|.|..+..+ .+.++|+||+|+++|++++++|+|+|.+.+..+||||
T Consensus 241 L~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~~~~g~~~~i~g~G~p~~~~~~~GDL~ 320 (369)
T PRK14288 241 LYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDRQTFAFRNEGVKHPESSYRGSLI 320 (369)
T ss_pred EEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCCCCCCcEEEEcCCCCCCCCCCCCCCEE
Confidence 6799999999555444 2346899999999999999999999976655679999
Q ss_pred EEEEEecCCcccccCCCceeE
Q psy2902 821 IEIHIKPHKVFERDGDDLHYE 841 (945)
Q Consensus 821 i~i~v~~~~~~~r~g~dl~~~ 841 (945)
|+|+|..|+.|+.++..++.+
T Consensus 321 v~~~v~~P~~ls~~q~~~l~~ 341 (369)
T PRK14288 321 VELQVIYPKSLNKEQQELLEK 341 (369)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 999999999988877655443
No 69
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=5.7e-21 Score=212.11 Aligned_cols=171 Identities=23% Similarity=0.449 Sum_probs=138.7
Q ss_pred ccccccccccCCC-CCCCCCCCCCCCCccceeeccccccccccceeeEeeccc-------------cccCCCCCcccccc
Q psy2902 664 DAFGDIFGDIFGS-NRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS-------------WDICKSCYGNGAKK 729 (945)
Q Consensus 664 d~f~~~F~~~~g~-~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~-------------~~~C~~C~G~G~~~ 729 (945)
|+|++||+++.++ .......++.+....+.++|++.+.+.....+......| ..+|+.|+|+|...
T Consensus 103 d~f~~~fgg~~~~~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~ 182 (369)
T PRK14282 103 DIFDIFFGERRTQEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIR 182 (369)
T ss_pred hhhhHhhcccCCcccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCCCCCccCCCCCCCCcCCCCCCCcCEEE
Confidence 7888888853222 122233567889999999999999999988888877665 36899999999864
Q ss_pred Cc---------CcccCCCCCCCceEeEeeceeeeeecCCCCCCceEE---------------------------------
Q psy2902 730 GT---------SPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKV--------------------------------- 767 (945)
Q Consensus 730 ~~---------~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~--------------------------------- 767 (945)
.. ++++|+.|+|+|++ +...|+.|+|+|++
T Consensus 183 ~~~~~~~G~~~~~~~C~~C~G~G~~--------~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~ 254 (369)
T PRK14282 183 EERRSFFGVFVSERTCERCGGTGKI--------PGEYCHECGGSGRIRRRVRTTVKIPAGVEDGTVLRITGGGNAGYYGG 254 (369)
T ss_pred EEEEccCcceEEEEECCCCCCccee--------CCCCCCCCCCceeEEEEEEEEEEeCCCCCCCCEEEEecccCCCCCCC
Confidence 32 46799999999998 78899999999962
Q ss_pred -----------eecCCcccCCCceEee--------------------eeeEEEEeecCCCCCeEEEEcCCCCCCCCCCCC
Q psy2902 768 -----------IPHPCLDCNGIGRIKR--------------------NKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSN 816 (945)
Q Consensus 768 -----------~~~~c~~c~G~g~~~~--------------------~~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~ 816 (945)
.+|+.|+|.|..+..+ .++++|+||+|+++|++++|+|+|+|..+.+.+
T Consensus 255 ~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g~~~g~~iri~GkG~p~~~~~~~ 334 (369)
T PRK14282 255 PYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPGTQPETVFRLKGKGLPNMRYGRR 334 (369)
T ss_pred CCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCCCcCCCCEEEECCCCCCCCCCCCC
Confidence 6799999999544443 245689999999999999999999997655568
Q ss_pred ccEEEEEEEecCCcccccCCCceeEE
Q psy2902 817 GNLYIEIHIKPHKVFERDGDDLHYEM 842 (945)
Q Consensus 817 Gdl~i~i~v~~~~~~~r~g~dl~~~~ 842 (945)
|||||+|+|.+|+.|++++.+|+.++
T Consensus 335 GDL~V~~~v~~P~~l~~~~~~ll~~l 360 (369)
T PRK14282 335 GDLIVNVHVEIPKRLSREERKLLKEL 360 (369)
T ss_pred CCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999998887653
No 70
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=4.5e-21 Score=213.49 Aligned_cols=151 Identities=21% Similarity=0.414 Sum_probs=124.7
Q ss_pred CCCCCCCccceeeccccccccccceeeEeeccc-------------cccCCCCCccccccCc---------CcccCCCCC
Q psy2902 683 NNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS-------------WDICKSCYGNGAKKGT---------SPISCFTCS 740 (945)
Q Consensus 683 ~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~-------------~~~C~~C~G~G~~~~~---------~~~~C~~C~ 740 (945)
.++.+....+.++|++.+.+.....+......| ..+|+.|+|+|..... ++++|+.|+
T Consensus 117 ~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~ 196 (380)
T PRK14276 117 RQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCH 196 (380)
T ss_pred CCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCC
Confidence 456788899999999999999888877776655 3789999999986432 367999999
Q ss_pred CCceEeEeeceeeeeecCCCCCCceEE--------------------------------------------eecCCcccC
Q psy2902 741 GQGQVRMQQGFFSIQQTCPKCQGAGKV--------------------------------------------IPHPCLDCN 776 (945)
Q Consensus 741 G~G~~~~~~~~~~~~~~C~~C~G~g~~--------------------------------------------~~~~c~~c~ 776 (945)
|+|++ +..+|+.|+|.|++ .+|+.|+|.
T Consensus 197 G~G~~--------~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~ 268 (380)
T PRK14276 197 GTGKE--------IKEPCQTCHGTGHEKQAHTVSVKIPAGVETGQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERD 268 (380)
T ss_pred CCCcc--------ccCCCCCCCCceEEEEEEEEEEEeCCCccCCcEEEEeccccCCCCCCCCcCEEEEEEEEECcceeee
Confidence 99998 78899999999962 679999999
Q ss_pred CCceEee---------------ee----eEEEEeecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCC
Q psy2902 777 GIGRIKR---------------NK----TLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDD 837 (945)
Q Consensus 777 G~g~~~~---------------~~----~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~d 837 (945)
|..+... .+ .++|+||+|+++|++++++|+|+|..+++.+|||||+|+|..|..++.++..
T Consensus 269 G~DL~~~~~Isl~eAl~G~~~~v~tldg~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ 348 (380)
T PRK14276 269 GSTIYYTLPISFVQAALGDTVEVPTVHGDVELKIPAGTQTGKKFRLRGKGAPKLRGGGNGDQHVTVNIVTPTKLNDAQKE 348 (380)
T ss_pred cceEEEEEecCHHHHhCCCeEEEEcCCCcEEEEECCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHH
Confidence 9544443 22 3579999999999999999999997765668999999999999988877766
Q ss_pred ceeE
Q psy2902 838 LHYE 841 (945)
Q Consensus 838 l~~~ 841 (945)
++.+
T Consensus 349 ~l~~ 352 (380)
T PRK14276 349 ALKA 352 (380)
T ss_pred HHHH
Confidence 5544
No 71
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=8e-21 Score=210.31 Aligned_cols=151 Identities=22% Similarity=0.362 Sum_probs=122.8
Q ss_pred CCCCCCCccceeeccccccccccceeeEeeccc-------------cccCCCCCccccccCc---------CcccCCCCC
Q psy2902 683 NNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS-------------WDICKSCYGNGAKKGT---------SPISCFTCS 740 (945)
Q Consensus 683 ~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~-------------~~~C~~C~G~G~~~~~---------~~~~C~~C~ 740 (945)
.++.+...++.++|++.+.+.....+......| ..+|+.|+|+|..... .+++|+.|+
T Consensus 120 ~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~ 199 (372)
T PRK14296 120 TKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCN 199 (372)
T ss_pred CCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcC
Confidence 356788899999999999999888888776655 3789999999986532 357999999
Q ss_pred CCceEeEeeceeeeeecCCCCCCceEE--------------------------------------------eecCCcccC
Q psy2902 741 GQGQVRMQQGFFSIQQTCPKCQGAGKV--------------------------------------------IPHPCLDCN 776 (945)
Q Consensus 741 G~G~~~~~~~~~~~~~~C~~C~G~g~~--------------------------------------------~~~~c~~c~ 776 (945)
|+|++ +...|+.|+|.|++ .+|+.|+|.
T Consensus 200 G~G~~--------~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~ 271 (372)
T PRK14296 200 GAGKI--------IKNKCKNCKGKGKYLERKKIEVNIPKGIRPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEII 271 (372)
T ss_pred Cccee--------ecccccCCCCceEEEEEEEEEEEECCCCCCCCEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEe
Confidence 99998 78899999999962 679999995
Q ss_pred -CCceEee---------------eee----EEEEeecCCCCCeEEEEcCCCCCCC-CCCCCccEEEEEEEecCCcccccC
Q psy2902 777 -GIGRIKR---------------NKT----LEVKIPAGIENNMRIRSTGNGEPGL-NGGSNGNLYIEIHIKPHKVFERDG 835 (945)
Q Consensus 777 -G~g~~~~---------------~~~----l~v~ip~G~~~g~~i~~~g~G~~~~-~~~~~Gdl~i~i~v~~~~~~~r~g 835 (945)
|..+..+ .++ ++|+||+|+++|++++++|+|||.. +++.+|||||+|+|..|+.++.++
T Consensus 272 ~G~DL~~~~~Isl~eAllG~~~~i~tldG~~~v~ip~~t~~g~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q 351 (372)
T PRK14296 272 NNNDILMTYNISYLDAILGNEIIIKTLDGDIKYKLPKSINSNELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKE 351 (372)
T ss_pred CCCcEEEEEecCHHHHhCCCEEEeeCCCCCEEEEECCccCCCcEEEEcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHH
Confidence 7444433 333 5799999999999999999999944 345689999999999999888777
Q ss_pred CCceeE
Q psy2902 836 DDLHYE 841 (945)
Q Consensus 836 ~dl~~~ 841 (945)
..++.+
T Consensus 352 ~~~l~~ 357 (372)
T PRK14296 352 KELIEQ 357 (372)
T ss_pred HHHHHH
Confidence 665444
No 72
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=6.7e-21 Score=211.28 Aligned_cols=152 Identities=22% Similarity=0.461 Sum_probs=126.3
Q ss_pred CCCCCCCccceeeccccccccccceeeEeecccc-------------ccCCCCCccccccC-----cCcccCCCCCCCce
Q psy2902 683 NNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSW-------------DICKSCYGNGAKKG-----TSPISCFTCSGQGQ 744 (945)
Q Consensus 683 ~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~-------------~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~ 744 (945)
.++.+....+.++|++.+.+.....+......|. ..|+.|+|+|.... +.+++|+.|+|+|+
T Consensus 115 ~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~ 194 (373)
T PRK14301 115 QAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGR 194 (373)
T ss_pred CCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcccCCCCCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceee
Confidence 4667889999999999999998888887776653 68999999998643 24789999999999
Q ss_pred EeEeeceeeeeecCCCCCCceEE--------------------------------------------eecCCcccCCCce
Q psy2902 745 VRMQQGFFSIQQTCPKCQGAGKV--------------------------------------------IPHPCLDCNGIGR 780 (945)
Q Consensus 745 ~~~~~~~~~~~~~C~~C~G~g~~--------------------------------------------~~~~c~~c~G~g~ 780 (945)
+ +...|+.|+|.|++ .+|+-|+|.|..+
T Consensus 195 ~--------~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL 266 (373)
T PRK14301 195 V--------ITHPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLRLRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDL 266 (373)
T ss_pred e--------cCCCCCCCCCCceeccceEEEEEeCCCCcCCCEEEEeccccCCCCCCCCcCEEEEEEEEECCCceeecCcE
Confidence 8 78899999999972 6788999999554
Q ss_pred Eee---------------e----eeEEEEeecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCCceeE
Q psy2902 781 IKR---------------N----KTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYE 841 (945)
Q Consensus 781 ~~~---------------~----~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~ 841 (945)
..+ . ..++|+||+|+++|++++|+|+|+|..+++.+|||||+|+|..|+.++.++.+++.+
T Consensus 267 ~~~~~Isl~eAl~G~~~~v~tldG~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~I~~~V~~P~~l~~~q~~~l~~ 346 (373)
T PRK14301 267 VVTQEISFVQAALGDRIEVPTLDDPVTLDIPKGTQSGEVFRLRGKGLPYLGSSQKGDLLVEVSVVTPTKLTKRQEELLRE 346 (373)
T ss_pred EEEEEecHHHHhCCCeEEEecCCccEEEEECCCcCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 443 2 236899999999999999999999977666689999999999999998887766554
Q ss_pred E
Q psy2902 842 M 842 (945)
Q Consensus 842 ~ 842 (945)
+
T Consensus 347 l 347 (373)
T PRK14301 347 F 347 (373)
T ss_pred H
Confidence 3
No 73
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.4e-20 Score=209.60 Aligned_cols=174 Identities=26% Similarity=0.519 Sum_probs=141.5
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeecccc-------------ccCCCCCccc
Q psy2902 660 SNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSW-------------DICKSCYGNG 726 (945)
Q Consensus 660 ~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~-------------~~C~~C~G~G 726 (945)
+.|+|+|+.||++.++... +...++.+....+.++|++.|.+............|. ..|+.|+|+|
T Consensus 91 ~~f~~~f~~~fgg~~~~~~-~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G 169 (371)
T PRK10767 91 DIFGDIFGDIFGGGRGGGR-QRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAG 169 (371)
T ss_pred cchhhhhhhhccCCccccC-CCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCccCCCCCCee
Confidence 3477889999986432222 2345678899999999999999998888887777653 5899999999
Q ss_pred cccC-----cCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEE----------------------------------
Q psy2902 727 AKKG-----TSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKV---------------------------------- 767 (945)
Q Consensus 727 ~~~~-----~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~---------------------------------- 767 (945)
.... +.+++|+.|+|+|+. +..+|+.|+|+|++
T Consensus 170 ~~~~~~g~~~~~~~C~~C~G~G~~--------~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~ 241 (371)
T PRK10767 170 QVRMQQGFFTVQQTCPTCHGRGKI--------IKDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRLSGEGEAGERGGP 241 (371)
T ss_pred EEEEeeceEEEEEeCCCCCCceeE--------CCCCCCCCCCCceEeeeeeEEEecCCCCCCCcEEEEecCccCCCCCCC
Confidence 7642 246799999999998 78899999999962
Q ss_pred ----------eecCCcccCCCceEee---------------ee----eEEEEeecCCCCCeEEEEcCCCCCCCCCCCCcc
Q psy2902 768 ----------IPHPCLDCNGIGRIKR---------------NK----TLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGN 818 (945)
Q Consensus 768 ----------~~~~c~~c~G~g~~~~---------------~~----~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gd 818 (945)
.+|+.|+|.|.++..+ .+ +++|+||+|+++|++++++|+|+|..+++.+||
T Consensus 242 ~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GD 321 (371)
T PRK10767 242 AGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRVKLKIPEGTQTGKLFRLRGKGVKSVRSGARGD 321 (371)
T ss_pred CcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCCcEEEEeCCCCCCCCEEEECCCCcCCCCCCCCCC
Confidence 6789999999555444 22 468999999999999999999999776667899
Q ss_pred EEEEEEEecCCcccccCCCceeEE
Q psy2902 819 LYIEIHIKPHKVFERDGDDLHYEM 842 (945)
Q Consensus 819 l~i~i~v~~~~~~~r~g~dl~~~~ 842 (945)
|||+|+|.+|+.|++++.+++.++
T Consensus 322 L~v~~~v~~P~~l~~~~~~ll~~l 345 (371)
T PRK10767 322 LYCQVVVETPVNLTKRQKELLEEF 345 (371)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999998887664
No 74
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.82 E-value=1.2e-18 Score=198.26 Aligned_cols=195 Identities=19% Similarity=0.258 Sum_probs=146.2
Q ss_pred HHHHHHHHHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCch
Q psy2902 220 RQATKDAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGG 299 (945)
Q Consensus 220 r~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG 299 (945)
.+.+.+|++.|||++..++.||.|+|++++... ..+..++|+|+||||||++++.- +.+. ......+||
T Consensus 168 ~~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~--e~~~gv~vvDiGggtTdisv~~~------G~l~---~~~~i~~GG 236 (420)
T PRK09472 168 AKNIVKAVERCGLKVDQLIFAGLASSYAVLTED--ERELGVCVVDIGGGTMDIAVYTG------GALR---HTKVIPYAG 236 (420)
T ss_pred HHHHHHHHHHcCCeEeeEEehhhHHHHHhcChh--hhhcCeEEEEeCCCceEEEEEEC------CEEE---EEeeeechH
Confidence 344467999999999999999999999986554 44677999999999999999963 2221 112245699
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCC------cceeeeeceeeccCCCCeEEEEEEcHH
Q psy2902 300 EDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSS------KQTEINEPYIAMSNGAPVHLNLKITRA 373 (945)
Q Consensus 300 ~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~------~~~~i~i~~~~~~~~~~~~~~~~itr~ 373 (945)
+++++.|...+. .. ..+||++|..+... ....+.++.... .....+++.
T Consensus 237 ~~it~dIa~~l~--------i~-----------~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~------~~~~~i~~~ 291 (420)
T PRK09472 237 NVVTSDIAYAFG--------TP-----------PSDAEAIKVRHGCALGSIVGKDESVEVPSVGG------RPPRSLQRQ 291 (420)
T ss_pred HHHHHHHHHHhC--------cC-----------HHHHHHHHHhcceeccccCCCCceeEecCCCC------CCCeEEcHH
Confidence 999988875442 11 56899999776542 223444443211 123588999
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCC------------C
Q psy2902 374 KLELLVDELITRTIEPCRI-------AIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRR------------D 434 (945)
Q Consensus 374 ~~e~~~~~~i~~i~~~i~~-------~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~------------~ 434 (945)
+|.+++.+.++++.+.+.+ .|..++.....++.|+|+||+|++|.+++++++.|+.++.. .
T Consensus 292 ~l~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~P~~~~g~~~~~ 371 (420)
T PRK09472 292 TLAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYA 371 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeCCcccCCChhhc
Confidence 9999999977777777764 45666776667899999999999999999999999866532 2
Q ss_pred CCCCchhhhhHHHhhh
Q psy2902 435 INPDEAVAVGAAIQGS 450 (945)
Q Consensus 435 ~~p~~avA~GAa~~a~ 450 (945)
.+|..++|.|+++|+.
T Consensus 372 ~~P~~ata~Gl~~~~~ 387 (420)
T PRK09472 372 QEPYYSTAVGLLHYGK 387 (420)
T ss_pred CCcHHHHHHHHHHHhh
Confidence 4799999999999986
No 75
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.5e-20 Score=209.56 Aligned_cols=172 Identities=20% Similarity=0.421 Sum_probs=137.0
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccc-------------cccCCCCCcccc
Q psy2902 661 NFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS-------------WDICKSCYGNGA 727 (945)
Q Consensus 661 ~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~-------------~~~C~~C~G~G~ 727 (945)
+|.|+|++||++..++.+.....++.+....+.++|++.+.+.....+......| ..+|+.|+|+|.
T Consensus 122 ~f~d~f~~~fg~~~~~~~~~~~~~g~di~~~l~ltLee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~ 201 (392)
T PRK14279 122 GIGDLFGGLFNRGGGSARPSRPRRGNDLETETTLDFVEAAKGVTMPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGV 201 (392)
T ss_pred chhhhhhhhhcCCCcccccCCCCCCCCeEEEEEEEHHHHhCCeEEEEeeeccccCCCCccccccCCCCCCCCCCCcceEE
Confidence 4778999999854322222233567889999999999999999888877776665 378999999998
Q ss_pred ccCc-----CcccCCCCCCCceEeEeeceeeeeecCCCCCCceEE-----------------------------------
Q psy2902 728 KKGT-----SPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKV----------------------------------- 767 (945)
Q Consensus 728 ~~~~-----~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~----------------------------------- 767 (945)
.... .+++|+.|+|+|++ +..+|+.|+|.|++
T Consensus 202 ~~~~~g~~~~~~~C~~C~G~G~~--------i~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~ 273 (392)
T PRK14279 202 ISRNQGAFGFSEPCTDCRGTGSI--------IEDPCEECKGTGVTTRTRTINVRIPPGVEDGQRIRLAGQGEAGLRGAPS 273 (392)
T ss_pred EEEEecceEEEEecCCCCceeEE--------eCCcCCCCCCCeEEEEeeeeEEEeCCCCCCCcEEEEeCCccCCCCCCCC
Confidence 6432 46899999999998 78899999999962
Q ss_pred ---------eecCCcccCCCceEee---------------e----eeEEEEeecCCCCCeEEEEcCCCCCCCCCCCCccE
Q psy2902 768 ---------IPHPCLDCNGIGRIKR---------------N----KTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNL 819 (945)
Q Consensus 768 ---------~~~~c~~c~G~g~~~~---------------~----~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl 819 (945)
.+|+.|+|.|..+..+ . .+++|+||+|+++|++++++|+|+|.. ++.+|||
T Consensus 274 GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~i~v~Ip~g~~~g~~iri~g~G~p~~-~~~~GDL 352 (392)
T PRK14279 274 GDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPVGVKVPAGTADGRILRVRGRGVPKR-SGGAGDL 352 (392)
T ss_pred CCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCceEEEEECCCCCCCCEEEECCCCCCCC-CCCCCCE
Confidence 6789999999554443 2 236899999999999999999999964 3568999
Q ss_pred EEEEEEecCCcccccCCCceeE
Q psy2902 820 YIEIHIKPHKVFERDGDDLHYE 841 (945)
Q Consensus 820 ~i~i~v~~~~~~~r~g~dl~~~ 841 (945)
||+|+|..|+.++.++..++..
T Consensus 353 ~I~~~v~~P~~Ls~~q~~~l~~ 374 (392)
T PRK14279 353 LVTVKVAVPPNLDGAAAEALEA 374 (392)
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 9999999999888777655544
No 76
>KOG0715|consensus
Probab=99.81 E-value=2.6e-20 Score=197.08 Aligned_cols=234 Identities=33% Similarity=0.605 Sum_probs=192.0
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCCCc
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSA 655 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~~~ 655 (945)
.-|..||......+.+..++|..... .+.++|++|.+||++|++++|++.||.++..+..+
T Consensus 54 ~At~~EIK~Af~~LaKkyHPD~n~~~------------~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~~~------- 114 (288)
T KOG0715|consen 54 NATLSEIKSAFRKLAKKYHPDVNKDK------------EASKKFKEISEAYEILSDEEKRQEYDVYGLEQHGE------- 114 (288)
T ss_pred CCCHHHHHHHHHHHHHhhCCCCCCCc------------chhhHHHHHHHHHHHhcCHHHHHHHHHhhhhcccc-------
Confidence 35788999999999999999985533 45678999999999999999999999998776111
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCccccccCcCccc
Q psy2902 656 SAEASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPIS 735 (945)
Q Consensus 656 ~~~~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~~~~~ 735 (945)
.+++..+.|..+|++ . ......+.+.++.+.+.++++..|..+...+.....|..|.|.|...+.....
T Consensus 115 --~~g~~~~~~~~~~~~----~-----~~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 183 (288)
T KOG0715|consen 115 --FGGNPFDVFLEFFGG----K-----MNKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEEGAKRES 183 (288)
T ss_pred --ccCCccchHHHhhcc----c-----ccccccCcccccccccCHHHHhhccccceEEEeecccccccCcCccccccccc
Confidence 111344566666654 0 01112345677779999999999998999999999999999999999999999
Q ss_pred CCCCCCCceEeE-eeceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCCCCCCCC
Q psy2902 736 CFTCSGQGQVRM-QQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLNGG 814 (945)
Q Consensus 736 C~~C~G~G~~~~-~~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~ 814 (945)
|..|.|+|.... ....+... +|..|.|.|.+....|-.|.|.|.+...+.+.|.+|+|..++.+|++.+.|..
T Consensus 184 ~~~~~~~~~~~~~~~~~f~~~-~~~~c~~~~~~~~~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~~~~~~----- 257 (288)
T KOG0715|consen 184 CKTCSGRGLVSNPKEDPFILY-TCSYCLGRGLVLRDNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFAGHGND----- 257 (288)
T ss_pred chhhhCcccccccccCCccee-ecccccccceeccchHHHhhcchhhhhheeEEeecCcccccccEEEEecCCcc-----
Confidence 999999996532 22333334 99999999999999999999999888889999999999999999999986653
Q ss_pred CCccEEEEEEEecCCcccccCCCceeEEeeCHHH
Q psy2902 815 SNGNLYIEIHIKPHKVFERDGDDLHYEMPISFST 848 (945)
Q Consensus 815 ~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~e 848 (945)
||++.+.|.+++.|+|+|.|++++..|++.|
T Consensus 258 ---~l~v~~~v~~~~~~~r~~~~i~~~~~i~~~~ 288 (288)
T KOG0715|consen 258 ---DLFVRLIVAKSPSFRREGKDILYDAIISFTQ 288 (288)
T ss_pred ---eEEEEEEeccCcccccccCcccccccccccC
Confidence 9999999999999999999999999998753
No 77
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=4.3e-20 Score=206.11 Aligned_cols=175 Identities=25% Similarity=0.457 Sum_probs=138.2
Q ss_pred cccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccc-------------cccCCCCCcc
Q psy2902 659 ASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS-------------WDICKSCYGN 725 (945)
Q Consensus 659 ~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~-------------~~~C~~C~G~ 725 (945)
.+.|.++|+.+|++... .......++.+....+.++|++.|.+.....+......| ..+|+.|+|+
T Consensus 103 ~d~f~~~F~~~fgg~~~-~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~ 181 (386)
T PRK14277 103 GDIFEDIFGDFFGTGRR-RAETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGAKPGSKPVTCPVCHGT 181 (386)
T ss_pred hHHHHHhhcccccCCCc-CCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCCCCCCCCcCCCCCCccCCCCCCE
Confidence 34577888888875322 211223467789999999999999999988888877665 3789999999
Q ss_pred ccccCc---------CcccCCCCCCCceEeEeeceeeeeecCCCCCCceEE-----------------------------
Q psy2902 726 GAKKGT---------SPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKV----------------------------- 767 (945)
Q Consensus 726 G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~----------------------------- 767 (945)
|..... +.++|+.|+|+|.+ +..+|+.|+|+|++
T Consensus 182 G~~~~~~~~~~G~~~~~~~C~~C~G~G~~--------~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~ 253 (386)
T PRK14277 182 GQVRTRQNTPFGRIVNIRTCDRCHGEGKI--------ITDPCNKCGGTGRIRRRRKIKVNIPAGIDDGQMITLRGEGEPG 253 (386)
T ss_pred EEEEEEEeccCceEEEEEECCCCCcceee--------ccCCCCCCCCCcEEeeeeEEEEecCCCccCCcEEEEccccccC
Confidence 976422 35799999999998 78899999999972
Q ss_pred ---------------eecCCcccCCCceEee---------------eee----EEEEeecCCCCCeEEEEcCCCCCCCCC
Q psy2902 768 ---------------IPHPCLDCNGIGRIKR---------------NKT----LEVKIPAGIENNMRIRSTGNGEPGLNG 813 (945)
Q Consensus 768 ---------------~~~~c~~c~G~g~~~~---------------~~~----l~v~ip~G~~~g~~i~~~g~G~~~~~~ 813 (945)
.+|+.|+|.|..+..+ .++ ++|.||+|+++|++++++|+|+|..++
T Consensus 254 ~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~~ri~g~G~p~~~~ 333 (386)
T PRK14277 254 IKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGKVKFTIPEGTQTGTKFRLRGKGIPHLRG 333 (386)
T ss_pred CCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCCEEEEECCCCCCCCEEEECCCCCCCCCC
Confidence 6789999999544443 323 589999999999999999999997665
Q ss_pred CCCccEEEEEEEecCCcccccCCCceeEE
Q psy2902 814 GSNGNLYIEIHIKPHKVFERDGDDLHYEM 842 (945)
Q Consensus 814 ~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~ 842 (945)
+.+|||||+|+|..|..++.++.+++.++
T Consensus 334 ~~~GDL~v~~~V~~P~~Ls~~qk~~l~~l 362 (386)
T PRK14277 334 RGRGDQIVKVYIEVPKKLTEKQKELLREF 362 (386)
T ss_pred CCCCCEEEEEEEEeCCCCCHHHHHHHHHH
Confidence 56899999999999998887776665443
No 78
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=7.4e-20 Score=203.48 Aligned_cols=152 Identities=23% Similarity=0.461 Sum_probs=125.2
Q ss_pred CCCCCCCccceeeccccccccccceeeEeeccc-------------cccCCCCCccccccC---------cCcccCCCCC
Q psy2902 683 NNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS-------------WDICKSCYGNGAKKG---------TSPISCFTCS 740 (945)
Q Consensus 683 ~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~-------------~~~C~~C~G~G~~~~---------~~~~~C~~C~ 740 (945)
.++.+...++.++|++.|.+.....+....+.| ..+|+.|+|+|.... ..+++|+.|+
T Consensus 114 ~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~ 193 (376)
T PRK14280 114 RQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCN 193 (376)
T ss_pred ccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCC
Confidence 356788899999999999999888888777665 368999999997542 2467999999
Q ss_pred CCceEeEeeceeeeeecCCCCCCceEE--------------------------------------------eecCCcccC
Q psy2902 741 GQGQVRMQQGFFSIQQTCPKCQGAGKV--------------------------------------------IPHPCLDCN 776 (945)
Q Consensus 741 G~G~~~~~~~~~~~~~~C~~C~G~g~~--------------------------------------------~~~~c~~c~ 776 (945)
|+|++ +..+|+.|+|+|++ .+|+.|+|.
T Consensus 194 G~G~~--------~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~ 265 (376)
T PRK14280 194 GTGQE--------IKEKCPTCHGKGKVRKRKKINVKIPAGVDNGQQIRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERD 265 (376)
T ss_pred CCCce--------ecCCCCCCCCceEEEEEEEEEEEeCCCCcCCcEEEEcccccCCCCCCCCcCEEEEEEEecCCCeEEe
Confidence 99998 78899999999972 679999999
Q ss_pred CCceEee---------------ee----eEEEEeecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCC
Q psy2902 777 GIGRIKR---------------NK----TLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDD 837 (945)
Q Consensus 777 G~g~~~~---------------~~----~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~d 837 (945)
|..+..+ .+ .++|+||+|+++|++++++|+|+|...+..+|||||+|+|..|..++.++..
T Consensus 266 G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~Ls~~q~~ 345 (376)
T PRK14280 266 GDDIYCEMPLTFAQAALGDEIEVPTLHGKVKLKIPAGTQTGTQFRLKGKGVPNVRGYGQGDQYVVVRVVTPTKLTDRQKE 345 (376)
T ss_pred cCCEEEEEecCHHHHhCCCEEEEecCCceEEEEECCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHH
Confidence 9544443 22 3579999999999999999999997665578999999999999988877766
Q ss_pred ceeEE
Q psy2902 838 LHYEM 842 (945)
Q Consensus 838 l~~~~ 842 (945)
++..+
T Consensus 346 ~l~~l 350 (376)
T PRK14280 346 LLREF 350 (376)
T ss_pred HHHHH
Confidence 55443
No 79
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=9.7e-20 Score=202.25 Aligned_cols=175 Identities=25% Similarity=0.461 Sum_probs=138.6
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccc-------------cccCCCCCccc
Q psy2902 660 SNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS-------------WDICKSCYGNG 726 (945)
Q Consensus 660 ~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~-------------~~~C~~C~G~G 726 (945)
..|.++|+++|++...........++.+....+.++|++.+.+.....+......| ..+|+.|+|+|
T Consensus 93 ~~f~~~f~~~~gg~~~~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G 172 (372)
T PRK14300 93 DIFGDFFSDFMGGSRRSRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVG 172 (372)
T ss_pred hhHHHHHHhhcCCCCCCCCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCCCCccCCCccCeE
Confidence 45778888888753211111122456789999999999999999888888777665 37899999999
Q ss_pred cccCc-----CcccCCCCCCCceEeEeeceeeeeecCCCCCCceEE----------------------------------
Q psy2902 727 AKKGT-----SPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKV---------------------------------- 767 (945)
Q Consensus 727 ~~~~~-----~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~---------------------------------- 767 (945)
..... ...+|+.|+|.|.+ +..+|+.|+|+|++
T Consensus 173 ~~~~~~g~~~~~~~C~~C~G~G~~--------~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~ 244 (372)
T PRK14300 173 ATRMQQGFFTIEQACHKCQGNGQI--------IKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHTGEGEAGIRGGN 244 (372)
T ss_pred EEEEeeceEEEEEeCCCCCccceE--------eCCCCCCCCCceEEEeeEEEEEEECCCCCCCcEEEEeccccCCCCCCC
Confidence 86432 46799999999998 78899999999972
Q ss_pred ----------eecCCcccCCCceEee--------------------eeeEEEEeecCCCCCeEEEEcCCCCCCCCCCCCc
Q psy2902 768 ----------IPHPCLDCNGIGRIKR--------------------NKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNG 817 (945)
Q Consensus 768 ----------~~~~c~~c~G~g~~~~--------------------~~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~G 817 (945)
.+|+-|+|.|..+..+ .+.++|+||+|+++|++++++|+|+|.+++..+|
T Consensus 245 ~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g~~~g~~iri~g~G~p~~~~~~~G 324 (372)
T PRK14300 245 SGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAGTQNGDQLRLRSKGMSKMRSTIRG 324 (372)
T ss_pred CCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCccCCCcEEEECCCCCCCCCCCCCC
Confidence 5788999999544443 2457899999999999999999999976656789
Q ss_pred cEEEEEEEecCCcccccCCCceeEE
Q psy2902 818 NLYIEIHIKPHKVFERDGDDLHYEM 842 (945)
Q Consensus 818 dl~i~i~v~~~~~~~r~g~dl~~~~ 842 (945)
||||+|+|.+|..|+.++..++..+
T Consensus 325 DL~V~~~v~~P~~ls~~qk~~l~~l 349 (372)
T PRK14300 325 DMLTHIHVEVPKNLSKRQRELLEEF 349 (372)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999999888776555443
No 80
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=1e-19 Score=201.88 Aligned_cols=174 Identities=26% Similarity=0.403 Sum_probs=135.1
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeecccc-------------ccCCCCCccc
Q psy2902 660 SNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSW-------------DICKSCYGNG 726 (945)
Q Consensus 660 ~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~-------------~~C~~C~G~G 726 (945)
+-|+++|+.-+++..+++......++.+....+.++|++.|.+.....+......|. .+|+.|+|+|
T Consensus 98 d~f~~ffgg~~~~~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G 177 (372)
T PRK14286 98 DIFGDFFGGGRGGGSGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSG 177 (372)
T ss_pred hHHHHhhCCCccCCCcccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcCCCcCCCCCCccCCCCcCeE
Confidence 446666764332211111112234678899999999999999999888888777653 7899999999
Q ss_pred cccC-----cCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEE----------------------------------
Q psy2902 727 AKKG-----TSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKV---------------------------------- 767 (945)
Q Consensus 727 ~~~~-----~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~---------------------------------- 767 (945)
.... ...++|+.|+|+|++ +..+|+.|+|+|.+
T Consensus 178 ~v~~~~G~~~~~~~C~~C~G~G~~--------~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~ 249 (372)
T PRK14286 178 QIRRTQGFFSVATTCPTCRGKGTV--------ISNPCKTCGGQGLQEKRRTINIKIPPGVETGSRLKVSGEGEAGPNGGP 249 (372)
T ss_pred EEEEEeceEEEEEeCCCCCceeeE--------ecccCCCCCCCcEEecceEEEEEECCCCCCCCEEEECCccccCCCCCC
Confidence 7643 256799999999998 78899999999972
Q ss_pred ----------eecCCcccCCCceEee--------------------eeeEEEEeecCCCCCeEEEEcCCCCCCCCCCCCc
Q psy2902 768 ----------IPHPCLDCNGIGRIKR--------------------NKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNG 817 (945)
Q Consensus 768 ----------~~~~c~~c~G~g~~~~--------------------~~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~G 817 (945)
.+|+.|+|.|.++... .+.++|+||+|+++|++++++|+|+|..+++.+|
T Consensus 250 ~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g~~~g~~~ri~G~G~P~~~~~~~G 329 (372)
T PRK14286 250 HGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEGTESGQVFRLKGHGMPYLGAYGKG 329 (372)
T ss_pred CceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCCccCCCcEEEECCCCCCCCCCCCCC
Confidence 6789999999554443 2346899999999999999999999977656789
Q ss_pred cEEEEEEEecCCcccccCCCceeE
Q psy2902 818 NLYIEIHIKPHKVFERDGDDLHYE 841 (945)
Q Consensus 818 dl~i~i~v~~~~~~~r~g~dl~~~ 841 (945)
||||+|+|..|+.++.++.+++..
T Consensus 330 DL~V~~~V~~P~~Ls~~qk~~l~~ 353 (372)
T PRK14286 330 DQHVIVKIEIPKKITRRQRELIEE 353 (372)
T ss_pred cEEEEEEEECCCCCCHHHHHHHHH
Confidence 999999999999888887666544
No 81
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=1.8e-19 Score=201.54 Aligned_cols=152 Identities=23% Similarity=0.501 Sum_probs=126.9
Q ss_pred CCCCCCCccceeeccccccccccceeeEeeccc-------------cccCCCCCccccccC-----cCcccCCCCCCCce
Q psy2902 683 NNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS-------------WDICKSCYGNGAKKG-----TSPISCFTCSGQGQ 744 (945)
Q Consensus 683 ~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~-------------~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~ 744 (945)
.++.+...++.++|++.+.+.....+......| ..+|+.|+|+|.... ...++|+.|+|.|+
T Consensus 129 ~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~ 208 (391)
T PRK14284 129 RQGASKKVHITLSFEEAAKGVEKELLVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGR 208 (391)
T ss_pred CCCCCeEEEEEEEHHHHhCCeeEEEEEeeeccCCCCcccccCCCCCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCc
Confidence 467788999999999999999888888777665 378999999998643 24679999999999
Q ss_pred EeEeeceeeeeecCCCCCCceEE--------------------------------------------eecCCcccCCCce
Q psy2902 745 VRMQQGFFSIQQTCPKCQGAGKV--------------------------------------------IPHPCLDCNGIGR 780 (945)
Q Consensus 745 ~~~~~~~~~~~~~C~~C~G~g~~--------------------------------------------~~~~c~~c~G~g~ 780 (945)
+ +..+|+.|.|.|++ .+|+.|+|.|..+
T Consensus 209 ~--------~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL 280 (391)
T PRK14284 209 V--------ITDPCSVCRGQGRIKDKRSVHVHIPAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDL 280 (391)
T ss_pred c--------cCCcCCCCCCcceecceEEEEEEECCCCCCCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCE
Confidence 8 78899999999962 6799999999444
Q ss_pred Eee---------------e------eeEEEEeecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCCce
Q psy2902 781 IKR---------------N------KTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLH 839 (945)
Q Consensus 781 ~~~---------------~------~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~ 839 (945)
... . ..++|+||+|+++|++++|+|+|+|..+++.+|||||+|+|..|+.++.++.+++
T Consensus 281 ~~~~~Isl~eAl~G~~~~v~tld~g~~i~v~Ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll 360 (391)
T PRK14284 281 ILELPIGFVDAALGMKKEIPTLLKEGTCRLTIPEGIQSGTILKVRGQGFPNVHGKGRGDLLVRISVETPQNLSEEQKELL 360 (391)
T ss_pred EEEEEecHHHHhCCCeEEEeecCCCcEEEEEECCccCCCeEEEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHH
Confidence 333 2 4568999999999999999999999776567899999999999999988887665
Q ss_pred eEE
Q psy2902 840 YEM 842 (945)
Q Consensus 840 ~~~ 842 (945)
..+
T Consensus 361 ~~l 363 (391)
T PRK14284 361 RQF 363 (391)
T ss_pred HHH
Confidence 544
No 82
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=3e-19 Score=197.95 Aligned_cols=152 Identities=22% Similarity=0.445 Sum_probs=125.5
Q ss_pred CCCCCCCccceeeccccccccccceeeEeeccc-------------cccCCCCCccccccCc---------CcccCCCCC
Q psy2902 683 NNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS-------------WDICKSCYGNGAKKGT---------SPISCFTCS 740 (945)
Q Consensus 683 ~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~-------------~~~C~~C~G~G~~~~~---------~~~~C~~C~ 740 (945)
.++.+...++.++|++.+.+.....+......| ..+|+.|+|+|..... ..++|+.|.
T Consensus 109 ~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~ 188 (371)
T PRK14287 109 RQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCE 188 (371)
T ss_pred CCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCC
Confidence 356788899999999999998887777776554 3789999999976432 367999999
Q ss_pred CCceEeEeeceeeeeecCCCCCCceEE--------------------------------------------eecCCcccC
Q psy2902 741 GQGQVRMQQGFFSIQQTCPKCQGAGKV--------------------------------------------IPHPCLDCN 776 (945)
Q Consensus 741 G~G~~~~~~~~~~~~~~C~~C~G~g~~--------------------------------------------~~~~c~~c~ 776 (945)
|+|.+ +..+|+.|+|.|.+ .+|+.|+|.
T Consensus 189 G~G~~--------~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~ 260 (371)
T PRK14287 189 GTGKI--------IKQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVSGQGEAGVNGGPPGDLYVVFNVKPHEFFERD 260 (371)
T ss_pred CCCcc--------ccccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEEEccCCcCCCCCCCCccEEEEEEEecCCCEEEe
Confidence 99998 78889999999862 679999999
Q ss_pred CCceEee---------------ee----eEEEEeecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCC
Q psy2902 777 GIGRIKR---------------NK----TLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDD 837 (945)
Q Consensus 777 G~g~~~~---------------~~----~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~d 837 (945)
|..+..+ .. .++|+||+|+++|++++++|+|+|..+++.+|||||+|+|..|+.|++++..
T Consensus 261 G~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ 340 (371)
T PRK14287 261 GDDIYCEMPLTFPQVALGDEIEVPTLNGKVKLKIPAGTQTGTSFRLRGKGVPNVHGRGQGDQHVQVRVVTPKNLTEKEKE 340 (371)
T ss_pred cCCeEEEEeccHHHHhCCCEEEEEcCCCCEEEEECCCccCCcEEEEcCCCccCCCCCCCCCEEEEEEEEcCCCCCHHHHH
Confidence 9554443 22 3589999999999999999999997765668999999999999999988876
Q ss_pred ceeEE
Q psy2902 838 LHYEM 842 (945)
Q Consensus 838 l~~~~ 842 (945)
++.++
T Consensus 341 ll~~l 345 (371)
T PRK14287 341 LMREF 345 (371)
T ss_pred HHHHH
Confidence 65554
No 83
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=4.8e-19 Score=196.48 Aligned_cols=152 Identities=24% Similarity=0.429 Sum_probs=128.0
Q ss_pred CCCCCCCccceeeccccccccccceeeEeecccc------------ccCCCCCccccccCc---------CcccCCCCCC
Q psy2902 683 NNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSW------------DICKSCYGNGAKKGT---------SPISCFTCSG 741 (945)
Q Consensus 683 ~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~------------~~C~~C~G~G~~~~~---------~~~~C~~C~G 741 (945)
+++.+....+.++|++.|.+............|. ..|+.|+|+|..... ..++|+.|+|
T Consensus 120 ~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G 199 (365)
T PRK14290 120 NIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGG 199 (365)
T ss_pred CCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCccccCCCCCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCC
Confidence 3467889999999999999988877777776653 689999999976432 2579999999
Q ss_pred CceEeEeeceeeeeecCCCCCCceEE------------------------------------------eecCCcccCCCc
Q psy2902 742 QGQVRMQQGFFSIQQTCPKCQGAGKV------------------------------------------IPHPCLDCNGIG 779 (945)
Q Consensus 742 ~G~~~~~~~~~~~~~~C~~C~G~g~~------------------------------------------~~~~c~~c~G~g 779 (945)
.|.+ ...+|+.|+|+|.+ .+|+-|+|.|..
T Consensus 200 ~G~~--------~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~GDL~v~v~v~~h~~F~R~G~D 271 (365)
T PRK14290 200 RGRI--------PEEKCPRCNGTGTVVVNEDISVKIPKGATDNLRLRVKGKGQSYGGRTGDLYVVLRVNNDPNIQRINDD 271 (365)
T ss_pred ceeE--------ccCCCCCCCCceeEEEeeEEEEEECCCCCCCcEEEEccccCCCCCCCCCEEEEEEEcCCCCEEEecCC
Confidence 9998 78899999999972 678999999955
Q ss_pred eEee-------------------eeeEEEEeecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCCcee
Q psy2902 780 RIKR-------------------NKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHY 840 (945)
Q Consensus 780 ~~~~-------------------~~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~ 840 (945)
+..+ ..+++|+||+|+++|++++++|+|+|.+++..+|||||+|+|.+|+.|++++.+|+.
T Consensus 272 L~~~~~Isl~eAl~G~~~~I~~~~g~i~V~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~V~~P~~l~~~~~~ll~ 351 (365)
T PRK14290 272 LYVDQKINFPQAALGGEIEIKLFREKYNLKIPEGTQPGEVLKIKGAGMPHLNGHGSGDLLVRINVEVPKRLTSKQKELIR 351 (365)
T ss_pred EEEEEEeCHHHHhCCCEEEEEcCCceEEEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence 4443 234689999999999999999999997766678999999999999999999998887
Q ss_pred EE
Q psy2902 841 EM 842 (945)
Q Consensus 841 ~~ 842 (945)
++
T Consensus 352 ~~ 353 (365)
T PRK14290 352 EF 353 (365)
T ss_pred HH
Confidence 64
No 84
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=7e-19 Score=196.07 Aligned_cols=170 Identities=21% Similarity=0.466 Sum_probs=136.7
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeecccc-------------ccCCCCCccc
Q psy2902 660 SNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSW-------------DICKSCYGNG 726 (945)
Q Consensus 660 ~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~-------------~~C~~C~G~G 726 (945)
.+|.|+|++||++. +..... .++.+....+.++|++.+.+.....+......|. .+|+.|+|+|
T Consensus 117 ~~f~d~f~~~fg~~-~~~~~~--~~g~di~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G 193 (389)
T PRK14295 117 GGLGDVFGGLFNRG-GRRTQP--RRGADVESEVTLSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTG 193 (389)
T ss_pred cchhhhhcccccCC-CCCCCC--CCCCCEEEEEEEEHHHHhCCceEEEEeeccccCCCCcccccCCCCCCcCCCCCCCEe
Confidence 34778899989754 222222 3567888999999999999998888887776653 7899999999
Q ss_pred cccC-----cCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEE----------------------------------
Q psy2902 727 AKKG-----TSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKV---------------------------------- 767 (945)
Q Consensus 727 ~~~~-----~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~---------------------------------- 767 (945)
.... ..+++|+.|+|+|++ +..+|+.|.|+|++
T Consensus 194 ~~~~~~g~~~~~~~C~~C~G~G~~--------~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~ 265 (389)
T PRK14295 194 QVSRNSGGFSLSEPCPDCKGRGLI--------ADDPCLVCKGSGRAKSSRTMQVRIPAGVSDGQRIRLRGKGAPGERGGP 265 (389)
T ss_pred EEEEEecceEEEEecCCCcceeEE--------eccCCCCCCCCceEeeeeEEEEEeCCCCCCCCEEEEcccccCCCCCCC
Confidence 8643 246799999999998 78899999999962
Q ss_pred ----------eecCCcccCCCceEee--------------------eeeEEEEeecCCCCCeEEEEcCCCCCCCCCCCCc
Q psy2902 768 ----------IPHPCLDCNGIGRIKR--------------------NKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNG 817 (945)
Q Consensus 768 ----------~~~~c~~c~G~g~~~~--------------------~~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~G 817 (945)
.+|+.|+|.|..+..+ .++++|+||+|+++|++++++|+|+|.. ++.+|
T Consensus 266 ~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~~v~ip~g~~~g~~iri~G~G~p~~-~~~~G 344 (389)
T PRK14295 266 AGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPVTVKLPPGTPNGRVLRVRGKGAVRK-DGTRG 344 (389)
T ss_pred CccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEEEEEECCccCCCcEEEECCCCcCCC-CCCCC
Confidence 6799999999544433 2357899999999999999999999964 35689
Q ss_pred cEEEEEEEecCCcccccCCCceeE
Q psy2902 818 NLYIEIHIKPHKVFERDGDDLHYE 841 (945)
Q Consensus 818 dl~i~i~v~~~~~~~r~g~dl~~~ 841 (945)
||||+|+|..|..++.++..++.+
T Consensus 345 DL~i~~~v~~P~~Ls~~qk~~l~~ 368 (389)
T PRK14295 345 DLLVTVEVAVPKDLSGKAREALEA 368 (389)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHH
Confidence 999999999999888777666554
No 85
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=5.7e-19 Score=195.96 Aligned_cols=153 Identities=25% Similarity=0.433 Sum_probs=128.1
Q ss_pred CCCCCCCccceeeccccccccccceeeEeeccc-------------cccCCCCCccccccCc-----CcccCCCCCCCce
Q psy2902 683 NNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS-------------WDICKSCYGNGAKKGT-----SPISCFTCSGQGQ 744 (945)
Q Consensus 683 ~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~-------------~~~C~~C~G~G~~~~~-----~~~~C~~C~G~G~ 744 (945)
.++.+....+.++|++.+.+.....+......| ..+|+.|+|+|..... .+++|+.|+|+|+
T Consensus 115 ~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~ 194 (366)
T PRK14294 115 RAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGK 194 (366)
T ss_pred CCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCCCcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCe
Confidence 467788999999999999999888888777655 3689999999986432 4789999999999
Q ss_pred EeEeeceeeeeecCCCCCCceEE--------------------------------------------eecCCcccCCCce
Q psy2902 745 VRMQQGFFSIQQTCPKCQGAGKV--------------------------------------------IPHPCLDCNGIGR 780 (945)
Q Consensus 745 ~~~~~~~~~~~~~C~~C~G~g~~--------------------------------------------~~~~c~~c~G~g~ 780 (945)
. +...|+.|+|.|++ .+|+.|+|.|..+
T Consensus 195 ~--------~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL 266 (366)
T PRK14294 195 V--------IVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDV 266 (366)
T ss_pred e--------cCcCCCCCCCceEeecceeEEEecCCCCcCCcEEEEccCccCCCCCCCCCcEEEEEEEccCCcceecCCCE
Confidence 8 78899999999972 6789999999544
Q ss_pred Eee---------------eee----EEEEeecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCCceeE
Q psy2902 781 IKR---------------NKT----LEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYE 841 (945)
Q Consensus 781 ~~~---------------~~~----l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~ 841 (945)
..+ ..+ ++|+||+|+++|++++|+|+|+|.++++.+|||||+|+|.+|+.|++++.+++.+
T Consensus 267 ~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~iri~G~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~ 346 (366)
T PRK14294 267 HCKVPISFVQAALGAQIEVPTLEGERELKIPKGTQPGDIFRFKGKGIPSLRGGGRGDQIIEVEVKVPTRLTKKQEELLTE 346 (366)
T ss_pred EEEEEeCHHHHhCCCeEEEECCCCcEEEEECCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 443 332 4899999999999999999999977655789999999999999999999887765
Q ss_pred Ee
Q psy2902 842 MP 843 (945)
Q Consensus 842 ~~ 843 (945)
+.
T Consensus 347 ~~ 348 (366)
T PRK14294 347 FA 348 (366)
T ss_pred HH
Confidence 43
No 86
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=8.7e-19 Score=194.82 Aligned_cols=152 Identities=24% Similarity=0.421 Sum_probs=125.4
Q ss_pred CCCCCCCccceeeccccccccccceeeEeeccc-------------cccCCCCCccccccCc---------CcccCCCCC
Q psy2902 683 NNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS-------------WDICKSCYGNGAKKGT---------SPISCFTCS 740 (945)
Q Consensus 683 ~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~-------------~~~C~~C~G~G~~~~~---------~~~~C~~C~ 740 (945)
.++.+....+.++|++.+.+.....+......| ..+|+.|+|+|..... ..++|+.|+
T Consensus 110 ~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~ 189 (378)
T PRK14278 110 RPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCR 189 (378)
T ss_pred CCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCC
Confidence 456788899999999999999888888877665 3689999999985422 367999999
Q ss_pred CCceEeEeeceeeeeecCCCCCCceEE--------------------------------------------eecCCcccC
Q psy2902 741 GQGQVRMQQGFFSIQQTCPKCQGAGKV--------------------------------------------IPHPCLDCN 776 (945)
Q Consensus 741 G~G~~~~~~~~~~~~~~C~~C~G~g~~--------------------------------------------~~~~c~~c~ 776 (945)
|+|.+ +..+|+.|+|+|++ .+|+.|+|.
T Consensus 190 G~G~~--------~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~~~~h~~F~R~ 261 (378)
T PRK14278 190 GVGEV--------IPDPCHECAGDGRVRARREITVKIPAGVGDGMRIRLAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRD 261 (378)
T ss_pred cccee--------eCCCCCCCCCceeEecceEEEEEECCCCCCCcEEEEccCcCCCCCCCCCCCEEEEEEECcCCCEEEc
Confidence 99998 78899999999962 678999999
Q ss_pred CCceEee---------------e-----eeEEEEeecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCC
Q psy2902 777 GIGRIKR---------------N-----KTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGD 836 (945)
Q Consensus 777 G~g~~~~---------------~-----~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~ 836 (945)
|.++..+ . ..++|.||+|+++|++++++|+|+|...++.+|||||+|+|..|..++.++.
T Consensus 262 G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g~~~g~~lrl~g~G~p~~~~~~~GDL~V~~~V~~P~~Ls~~qk 341 (378)
T PRK14278 262 GDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPGTQPGSVITLRGRGMPHLRSGGRGDLHAHVEVVVPTRLDHEDI 341 (378)
T ss_pred CCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHH
Confidence 9444333 2 3458999999999999999999999766567899999999999998887776
Q ss_pred CceeEE
Q psy2902 837 DLHYEM 842 (945)
Q Consensus 837 dl~~~~ 842 (945)
.++..+
T Consensus 342 ~~l~~~ 347 (378)
T PRK14278 342 ELLREL 347 (378)
T ss_pred HHHHHH
Confidence 555443
No 87
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=99.76 E-value=1.6e-18 Score=148.23 Aligned_cols=79 Identities=42% Similarity=0.696 Sum_probs=68.7
Q ss_pred CceeEEeeCHHHHhcCCeEEEecCCC-eEEEEeCCCCCCCcEEEECCCCcCCCCCC-CCccEEEEEEEECCCCCCHHHHH
Q psy2902 837 DLHYEMPISFSTAALGGEIEAPTLNG-KAFFVIPEGTQSGKIFRLRGKGIKNIRSS-IPGDLFCHVTIETPVQLTEYQKK 914 (945)
Q Consensus 837 dl~~~~~i~l~eal~G~~~~v~~l~g-~~~~~i~~~~~~g~~~~i~g~G~~~~~~~-~~Gdl~v~~~i~~p~~l~~~~~~ 914 (945)
||+++++|+++||++|++++|+|+|| ...+.+|+++++|+++||+|+|||...++ .+|||||+|+|.+|++||++||+
T Consensus 1 DL~~~~~I~l~~al~G~~i~i~~l~g~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~~qk~ 80 (81)
T PF01556_consen 1 DLYCTIPISLKEALLGGTISIPTLDGKTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSPEQKE 80 (81)
T ss_dssp EEEEEEEEEHHHHHH-EEEEEE-TTS-EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSHHHHH
T ss_pred CeEEEEEeCHHHHhCCCEEEEECCCCCEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHhc
Confidence 78999999999999999999999999 67888999999999999999999987665 89999999999999999999998
Q ss_pred H
Q psy2902 915 L 915 (945)
Q Consensus 915 ~ 915 (945)
|
T Consensus 81 l 81 (81)
T PF01556_consen 81 L 81 (81)
T ss_dssp H
T ss_pred C
Confidence 6
No 88
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=8.7e-19 Score=196.12 Aligned_cols=151 Identities=26% Similarity=0.483 Sum_probs=125.0
Q ss_pred CCCCCCCccceeeccccccccccceeeEeeccc------------cccCCCCCccccccCc---------CcccCCCCCC
Q psy2902 683 NNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS------------WDICKSCYGNGAKKGT---------SPISCFTCSG 741 (945)
Q Consensus 683 ~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~------------~~~C~~C~G~G~~~~~---------~~~~C~~C~G 741 (945)
.++.+....+.++|++.+.+.....+......| ...|+.|+|+|..... .+++|+.|+|
T Consensus 134 ~~g~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G 213 (397)
T PRK14281 134 IPGTDLKIRLKLTLEEIAKGVEKTLKIKKQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGG 213 (397)
T ss_pred CCCCCEEEEEEeEHHHHhCCeEEEEEEEeeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcc
Confidence 457788999999999999999888888777665 3689999999986432 3679999999
Q ss_pred CceEeEeeceeeeeecCCCCCCceEE--------------------------------------------eecCCcccCC
Q psy2902 742 QGQVRMQQGFFSIQQTCPKCQGAGKV--------------------------------------------IPHPCLDCNG 777 (945)
Q Consensus 742 ~G~~~~~~~~~~~~~~C~~C~G~g~~--------------------------------------------~~~~c~~c~G 777 (945)
+|++ +..+|+.|+|.|++ .+|+.|+|.|
T Consensus 214 ~G~~--------~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G 285 (397)
T PRK14281 214 EGRV--------VKDRCPACYGEGIKQGEVTVKVTVPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNG 285 (397)
T ss_pred eeee--------eCCCCCCCCCCccEecceEEEEecCCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEec
Confidence 9998 78899999999972 6789999999
Q ss_pred CceEee---------------ee----eEEEEeecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCCc
Q psy2902 778 IGRIKR---------------NK----TLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDL 838 (945)
Q Consensus 778 ~g~~~~---------------~~----~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl 838 (945)
..+..+ .+ .++|+||+|+++|++++|+|+|+|..+++.+|||||+|+|..|..++.++..+
T Consensus 286 ~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~G~~~ri~g~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~ 365 (397)
T PRK14281 286 DDVIYNLAVSYPDLVLGTKVEVPTLDGAVKLTIPAGTQPETMLRIPGKGIGHLRGSGRGDQYVRVNVFVPKEVSHQDKEL 365 (397)
T ss_pred CCEEEEEEecHHHHhcCCeEEeecCCccEEEEeCCccCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHHH
Confidence 544444 22 25899999999999999999999976656789999999999999888777655
Q ss_pred eeE
Q psy2902 839 HYE 841 (945)
Q Consensus 839 ~~~ 841 (945)
+.+
T Consensus 366 l~~ 368 (397)
T PRK14281 366 LKE 368 (397)
T ss_pred HHH
Confidence 444
No 89
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=2.9e-18 Score=191.21 Aligned_cols=169 Identities=24% Similarity=0.462 Sum_probs=132.3
Q ss_pred ccccccccc-ccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccc-------------cccCCCCCccc
Q psy2902 661 NFADAFGDI-FGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS-------------WDICKSCYGNG 726 (945)
Q Consensus 661 ~f~d~f~~~-F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~-------------~~~C~~C~G~G 726 (945)
+|+|+|+.| |++.. .... .++.+...++.++|+..+.+............| ...|+.|+|+|
T Consensus 98 ~~~~~f~~~~fgg~~-~~~~---~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G 173 (378)
T PRK14283 98 GIGNIFDMFGFGGGS-RHGP---QRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTG 173 (378)
T ss_pred chhhhccccccCCCC-CCCc---cCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCccccCCCCCCccCCCcCCcc
Confidence 355667666 76532 3332 245688899999999999999887777776655 36799999999
Q ss_pred cccCc---------CcccCCCCCCCceEeEeeceeeeeecCCCCCCceEE------------------------------
Q psy2902 727 AKKGT---------SPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKV------------------------------ 767 (945)
Q Consensus 727 ~~~~~---------~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~------------------------------ 767 (945)
..... ...+|+.|+|+|.. +..+|..|+|+|.+
T Consensus 174 ~~~~~~~~~~g~~~~~~~C~~C~G~G~~--------~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~l~g~G~~~~ 245 (378)
T PRK14283 174 QVKQVRNTILGQMMNVTTCPDCQGEGKI--------VEKPCSNCHGKGVVRETKTISVKIPAGVETGSRLRVSGEGEMGD 245 (378)
T ss_pred EEEEEEeccCceEEEEEECCCCCcccee--------cCCCCCCCCCceeeccceeEEEEECCCCCCCcEEEEeccccCCC
Confidence 86422 36799999999998 78899999999962
Q ss_pred --------------eecCCcccCCCceEee---------------ee----eEEEEeecCCCCCeEEEEcCCCCCCCCCC
Q psy2902 768 --------------IPHPCLDCNGIGRIKR---------------NK----TLEVKIPAGIENNMRIRSTGNGEPGLNGG 814 (945)
Q Consensus 768 --------------~~~~c~~c~G~g~~~~---------------~~----~l~v~ip~G~~~g~~i~~~g~G~~~~~~~ 814 (945)
.+|+-|+|.|.++... .+ +++|.||+|+++|++++++|+|+|...++
T Consensus 246 ~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~~~ri~g~G~p~~~~~ 325 (378)
T PRK14283 246 RGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDGPVELKIPAGTQSGTTFRLKGHGMPSLRWS 325 (378)
T ss_pred CCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCCceEEEEeCCCCCCCCEEEECCCCCCCCCCC
Confidence 5688888888443333 33 46899999999999999999999976655
Q ss_pred CCccEEEEEEEecCCcccccCCCceeE
Q psy2902 815 SNGNLYIEIHIKPHKVFERDGDDLHYE 841 (945)
Q Consensus 815 ~~Gdl~i~i~v~~~~~~~r~g~dl~~~ 841 (945)
.+|||||+|+|..|+.++.++..++.+
T Consensus 326 ~~GdL~v~~~v~~P~~l~~~q~~ll~~ 352 (378)
T PRK14283 326 GKGNLYVKVKVVVPKKLSPKQKELLRE 352 (378)
T ss_pred CCCCEEEEEEEEeCCCCCHHHHHHHHH
Confidence 789999999999998888777665544
No 90
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=3e-18 Score=191.16 Aligned_cols=172 Identities=23% Similarity=0.436 Sum_probs=134.0
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccc-------------cccCCCCCccc
Q psy2902 660 SNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS-------------WDICKSCYGNG 726 (945)
Q Consensus 660 ~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~-------------~~~C~~C~G~G 726 (945)
+-|+++|+..|++. +..... ..++.+...++.++|++.+.+.....+......| ..+|+.|+|+|
T Consensus 98 d~f~~~fgg~~g~~-~~~~~~-~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G 175 (380)
T PRK14297 98 DIFDSFFGGGFGSS-SRRRNG-PQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKCGGTG 175 (380)
T ss_pred HHHHHHhccCcccc-ccccCC-CCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCcccccccCCCcCccCCCccCeE
Confidence 44667777545432 211111 2456789999999999999999888888877665 36899999999
Q ss_pred cccC---------cCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEE------------------------------
Q psy2902 727 AKKG---------TSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKV------------------------------ 767 (945)
Q Consensus 727 ~~~~---------~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~------------------------------ 767 (945)
.... ..+++|+.|+|+|.+ +..+|..|+|+|.+
T Consensus 176 ~~~~~~~~~~G~~~~~~~C~~C~G~G~~--------~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~I~l~g~G~~~~ 247 (380)
T PRK14297 176 QIRVQRNTPLGSFVSTTTCDKCGGSGKV--------IEDPCNKCHGKGKVRKNRKIKVNVPAGVDTGNVIPLRGQGEHGK 247 (380)
T ss_pred EEEEEEEcCCceeEEEEeCCCCCCCceE--------cCCCCCCCCCCeEEEeEeEEEEEeCCCCCCCcEEEEecCccCCC
Confidence 7642 247799999999998 78899999999952
Q ss_pred --------------eecCCcccCCCceEee---------------ee----eEEEEeecCCCCCeEEEEcCCCCCCCCCC
Q psy2902 768 --------------IPHPCLDCNGIGRIKR---------------NK----TLEVKIPAGIENNMRIRSTGNGEPGLNGG 814 (945)
Q Consensus 768 --------------~~~~c~~c~G~g~~~~---------------~~----~l~v~ip~G~~~g~~i~~~g~G~~~~~~~ 814 (945)
.+|+-|+|.|..+... .+ +++|+||+|+++|++++++|+|+|..+++
T Consensus 248 ~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~~~v~ip~g~~~g~~~ri~g~G~p~~~~~ 327 (380)
T PRK14297 248 NGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGEVKYEVPAGTQPGTVFRLKGKGVPRVNST 327 (380)
T ss_pred CCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCCcEEEEECCCcCCCCEEEEcCCCcCCCCCC
Confidence 5688899999544443 22 36899999999999999999999976666
Q ss_pred CCccEEEEEEEecCCcccccCCCceeE
Q psy2902 815 SNGNLYIEIHIKPHKVFERDGDDLHYE 841 (945)
Q Consensus 815 ~~Gdl~i~i~v~~~~~~~r~g~dl~~~ 841 (945)
.+|||||+|+|..|..++.++..++..
T Consensus 328 ~~GDL~v~~~v~~P~~ls~~q~~~l~~ 354 (380)
T PRK14297 328 GRGNQYVTVIVDIPKKLNSKQKEALTM 354 (380)
T ss_pred CCCcEEEEEEEEcCCCCCHHHHHHHHH
Confidence 789999999999999888777655443
No 91
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.72 E-value=5.7e-18 Score=188.01 Aligned_cols=171 Identities=24% Similarity=0.463 Sum_probs=132.0
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccc-------------cccCCCCCccc
Q psy2902 660 SNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS-------------WDICKSCYGNG 726 (945)
Q Consensus 660 ~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~-------------~~~C~~C~G~G 726 (945)
+-|+.+|+..++....... ...++.+...++.++|+..|.+.....+......| ...|+.|+|+|
T Consensus 93 ~~f~~~fg~~~g~~~~~~~--~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G 170 (354)
T TIGR02349 93 DIFGDFFGGGGGSGRRRRS--GPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTG 170 (354)
T ss_pred hhHHHHhccCcccCccccC--CCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCCCCccCCCCCCee
Confidence 3355566644432222111 12456788999999999999999888888777665 47899999999
Q ss_pred cccCc---------CcccCCCCCCCceEeEeeceeeeeecCCCCCCceEE------------------------------
Q psy2902 727 AKKGT---------SPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKV------------------------------ 767 (945)
Q Consensus 727 ~~~~~---------~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~------------------------------ 767 (945)
..... ++++|+.|+|+|+. +...|+.|+|+|++
T Consensus 171 ~~~~~~~~~~g~~~~~~~C~~C~G~G~~--------~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~ 242 (354)
T TIGR02349 171 QVRRQQGTPFGFFQQQQTCPTCGGEGKI--------IKEPCSTCKGKGRVKERKTITVKIPAGVDTGQRLRVSGKGNAGE 242 (354)
T ss_pred EEEEEEeccCCceEEEEecCCCCCccee--------cCCCCCCCCCCcEecccceEEEEECCCCCCCCEEEEecCccCCC
Confidence 75422 36799999999998 77899999999972
Q ss_pred --------------eecCCcccCCCceEee---------------e----eeEEEEeecCCCCCeEEEEcCCCCCCCCCC
Q psy2902 768 --------------IPHPCLDCNGIGRIKR---------------N----KTLEVKIPAGIENNMRIRSTGNGEPGLNGG 814 (945)
Q Consensus 768 --------------~~~~c~~c~G~g~~~~---------------~----~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~ 814 (945)
.+|+-|+|.|..+... . .+++|.||+|+++|++++++|+|+|..++.
T Consensus 243 ~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~~~~i~g~G~p~~~~~ 322 (354)
T TIGR02349 243 NGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDGDVKLKIPAGTQSGTVFRLKGKGVPRLRGN 322 (354)
T ss_pred CCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCCceEEEEECCcccCCcEEEECCCCcCCCCCC
Confidence 5688899988544433 2 246899999999999999999999977656
Q ss_pred CCccEEEEEEEecCCcccccCCCcee
Q psy2902 815 SNGNLYIEIHIKPHKVFERDGDDLHY 840 (945)
Q Consensus 815 ~~Gdl~i~i~v~~~~~~~r~g~dl~~ 840 (945)
.+|||||+|+|.+|+.|++++.+++.
T Consensus 323 ~~GDL~i~~~v~~P~~l~~~~~~~l~ 348 (354)
T TIGR02349 323 GRGDLLVTVKVETPKNLSKEQKELLE 348 (354)
T ss_pred CCCCEEEEEEEECCCCCCHHHHHHHH
Confidence 78999999999999999888765543
No 92
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=9.1e-18 Score=187.99 Aligned_cols=171 Identities=26% Similarity=0.480 Sum_probs=130.4
Q ss_pred cccccccccccc-----CCCC-CCCCCCCCCCCCccceeeccccccccccceeeEeeccc-------------cccCCCC
Q psy2902 662 FADAFGDIFGDI-----FGSN-RDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS-------------WDICKSC 722 (945)
Q Consensus 662 f~d~f~~~F~~~-----~g~~-~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~-------------~~~C~~C 722 (945)
|+++|+.+|+++ ++++ ......++.+....+.++|++.+.+.....+....+.| ...|+.|
T Consensus 98 f~~~fg~~~gg~~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C 177 (386)
T PRK14289 98 FGDIFGGHGGGFGGFGGFGGGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHGTGAEGNNGSETCPTC 177 (386)
T ss_pred hhhhhcccccCcccccccccccccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCCCCCCCCCCCCCCcCCCC
Confidence 556666655431 1211 11223467789999999999999999988888877665 3789999
Q ss_pred CccccccCc---------CcccCCCCCCCceEeEeeceeeeeecCCCCCCceEE--------------------------
Q psy2902 723 YGNGAKKGT---------SPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKV-------------------------- 767 (945)
Q Consensus 723 ~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~-------------------------- 767 (945)
+|+|..... ...+|+.|+|+|.+ +...|+.|+|+|.+
T Consensus 178 ~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~--------~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G 249 (386)
T PRK14289 178 KGSGSVTRVQNTILGTMQTQSTCPTCNGEGKI--------IKKKCKKCGGEGIVYGEEVITVKIPAGVAEGMQLSMNGKG 249 (386)
T ss_pred cCeEEEEEEEecccceEEEEEecCCCCccccc--------cCcCCCCCCCCcEEeeeEEEEEEeCCCCCCCCEEEEeccc
Confidence 999987532 36799999999998 77889999999973
Q ss_pred ------------------eecCCcccCCCceEee---------------e----eeEEEEeecCCCCCeEEEEcCCCCCC
Q psy2902 768 ------------------IPHPCLDCNGIGRIKR---------------N----KTLEVKIPAGIENNMRIRSTGNGEPG 810 (945)
Q Consensus 768 ------------------~~~~c~~c~G~g~~~~---------------~----~~l~v~ip~G~~~g~~i~~~g~G~~~ 810 (945)
.+|+-|.++|..+..+ . .+++|.||+|+++|++++++|+|+|.
T Consensus 250 ~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g~~~ri~g~G~p~ 329 (386)
T PRK14289 250 NAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGKAKVKIEAGTQPGKVLRLRNKGLPS 329 (386)
T ss_pred cCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCCceEEEEECCccCCCcEEEECCCCcCC
Confidence 3456677777433332 2 23689999999999999999999997
Q ss_pred CCCCCCccEEEEEEEecCCcccccCCCcee
Q psy2902 811 LNGGSNGNLYIEIHIKPHKVFERDGDDLHY 840 (945)
Q Consensus 811 ~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~ 840 (945)
.+++.+|||||+|+|+.|..++.++..++.
T Consensus 330 ~~~~~~GDL~v~~~v~~P~~l~~~q~~~l~ 359 (386)
T PRK14289 330 VNGYGTGDLLVNVSVYIPETLSKEEKQTLE 359 (386)
T ss_pred CCCCCCCcEEEEEEEEeCCCCCHHHHHHHH
Confidence 766678999999999999888777655443
No 93
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.71 E-value=1.9e-15 Score=166.59 Aligned_cols=199 Identities=25% Similarity=0.414 Sum_probs=159.2
Q ss_pred HHHHHHHHHHHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCC
Q psy2902 218 AQRQATKDAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFL 297 (945)
Q Consensus 218 ~qr~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~l 297 (945)
.--+.+.+|.+.+||++..++.+|.|+|.+...+. ...-.++++|+||||||++++.- +.+.. .+...+
T Consensus 165 ~~~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~d--EkelGv~lIDiG~GTTdIai~~~------G~l~~---~~~ipv 233 (418)
T COG0849 165 NILENLEKCVERAGLKVDNIVLEPLASALAVLTED--EKELGVALIDIGGGTTDIAIYKN------GALRY---TGVIPV 233 (418)
T ss_pred HHHHHHHHHHHHhCCCeeeEEEehhhhhhhccCcc--cHhcCeEEEEeCCCcEEEEEEEC------CEEEE---EeeEee
Confidence 34678899999999999999999999999987776 56778999999999999999974 22222 223456
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcce------eeeeceeeccCCCCeEEEEEEc
Q psy2902 298 GGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQT------EINEPYIAMSNGAPVHLNLKIT 371 (945)
Q Consensus 298 GG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~------~i~i~~~~~~~~~~~~~~~~it 371 (945)
||++++..|..-|.-. .+.||++|..+...... .+.++.... +....++
T Consensus 234 gG~~vT~DIa~~l~t~-------------------~~~AE~iK~~~g~a~~~~~~~~~~i~v~~vg~------~~~~~~t 288 (418)
T COG0849 234 GGDHVTKDIAKGLKTP-------------------FEEAERIKIKYGSALISLADDEETIEVPSVGS------DIPRQVT 288 (418)
T ss_pred CccHHHHHHHHHhCCC-------------------HHHHHHHHHHcCccccCcCCCcceEecccCCC------cccchhh
Confidence 9999999998665433 45789999998765433 244443322 2267899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCC------------CCCCCc
Q psy2902 372 RAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRR------------DINPDE 439 (945)
Q Consensus 372 r~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~------------~~~p~~ 439 (945)
+.++.+++++.+.+++.+++..|++.+.+..-...|+|+||++.+|.+.+..++.|+.++.. ..+|..
T Consensus 289 ~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P~~~~Gl~d~~~~p~f 368 (418)
T COG0849 289 RSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIARNPAF 368 (418)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCceEeCCCccccCchhhccCchh
Confidence 99999999999999999999999999987666788999999999999999999999765421 236888
Q ss_pred hhhhhHHHhhhhc
Q psy2902 440 AVAVGAAIQGSVL 452 (945)
Q Consensus 440 avA~GAa~~a~~~ 452 (945)
+.|.|..++++..
T Consensus 369 s~avGl~~~~~~~ 381 (418)
T COG0849 369 STAVGLLLYGALM 381 (418)
T ss_pred hhhHHHHHHHhhc
Confidence 9999999998753
No 94
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.2e-17 Score=186.21 Aligned_cols=141 Identities=29% Similarity=0.557 Sum_probs=117.4
Q ss_pred CCCCCCCccceeeccccccccccceeeEeeccc-------------cccCCCCCccccccC-----cCcccCCCCCCCce
Q psy2902 683 NNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS-------------WDICKSCYGNGAKKG-----TSPISCFTCSGQGQ 744 (945)
Q Consensus 683 ~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~-------------~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~ 744 (945)
.++.+....+.++|++.|.+.....+......| ...|+.|+|+|.... ..+++|+.|+|+|.
T Consensus 127 ~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~ 206 (382)
T PRK14291 127 VKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGV 206 (382)
T ss_pred cCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCCCCccccCCCCCCCccCCCCCCceEEEEecceEEEEecCCCCCCceE
Confidence 467788999999999999999888888777665 378999999998643 25789999999994
Q ss_pred EeEeeceeeeeecCCCCCCceEE--------------------------------------------eecCCcccCCCce
Q psy2902 745 VRMQQGFFSIQQTCPKCQGAGKV--------------------------------------------IPHPCLDCNGIGR 780 (945)
Q Consensus 745 ~~~~~~~~~~~~~C~~C~G~g~~--------------------------------------------~~~~c~~c~G~g~ 780 (945)
+...|+.|+|.|++ .+|+.|+|.|..+
T Consensus 207 ---------~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL 277 (382)
T PRK14291 207 ---------LREPCSKCNGRGLVIKKETIKVRIPPGVDNGSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNL 277 (382)
T ss_pred ---------EccCCCCCCCCceEEeeeEEEEEeCCCCCCCCEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCe
Confidence 36789999999962 6789999999544
Q ss_pred Eee--------------------eeeEEEEeecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCC--ccc
Q psy2902 781 IKR--------------------NKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHK--VFE 832 (945)
Q Consensus 781 ~~~--------------------~~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~--~~~ 832 (945)
+.+ .+.++|+||+|+++|++++|+|+|+|..++..+|||||+|+|..|. .++
T Consensus 278 ~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g~~~G~~i~i~G~G~p~~~~~~~GDL~V~~~V~~P~~~~ls 351 (382)
T PRK14291 278 YLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPGTKEGDKIRVPGKGMPRLKGSGYGDLVVRVHIDVPKISMLS 351 (382)
T ss_pred EEEEEeeHHHHhCCCEEEEecCCCCEEEEEECCccCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCCCcCcC
Confidence 444 2346899999999999999999999977656789999999999986 466
No 95
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=3.8e-17 Score=181.94 Aligned_cols=152 Identities=23% Similarity=0.401 Sum_probs=123.5
Q ss_pred CCCCCCCccceeeccccccccccceeeEeeccc-------------cccCCCCCccccccC---------cCcccCCCCC
Q psy2902 683 NNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS-------------WDICKSCYGNGAKKG---------TSPISCFTCS 740 (945)
Q Consensus 683 ~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~-------------~~~C~~C~G~G~~~~---------~~~~~C~~C~ 740 (945)
.++.+....+.++|+..+.+.....+......| ...|+.|+|+|.... ++..+|+.|.
T Consensus 114 ~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~ 193 (374)
T PRK14293 114 QRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCN 193 (374)
T ss_pred cCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCC
Confidence 456788899999999999999888888776655 367999999998642 2357999999
Q ss_pred CCceEeEeeceeeeeecCCCCCCceEE--------------------------------------------eecCCcccC
Q psy2902 741 GQGQVRMQQGFFSIQQTCPKCQGAGKV--------------------------------------------IPHPCLDCN 776 (945)
Q Consensus 741 G~G~~~~~~~~~~~~~~C~~C~G~g~~--------------------------------------------~~~~c~~c~ 776 (945)
|.|+. +..+|+.|.|+|++ .+|+-|++.
T Consensus 194 G~G~~--------~~~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~ 265 (374)
T PRK14293 194 GTGQV--------IEDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVSGEGDAGLRGGPPGDLYVYLFVKNDPEFRRD 265 (374)
T ss_pred cceeE--------eccCCCCCCCCcccccceEEEEEeCCCCCCCCEEEEccCccCCCCCCCCcCEEEEEEEeCCCccChh
Confidence 99998 78899999999962 456677777
Q ss_pred CCce---------------Eeeee----eEEEEeecCCCCCeEEEEcCCCCCCCCC-CCCccEEEEEEEecCCcccccCC
Q psy2902 777 GIGR---------------IKRNK----TLEVKIPAGIENNMRIRSTGNGEPGLNG-GSNGNLYIEIHIKPHKVFERDGD 836 (945)
Q Consensus 777 G~g~---------------~~~~~----~l~v~ip~G~~~g~~i~~~g~G~~~~~~-~~~Gdl~i~i~v~~~~~~~r~g~ 836 (945)
|..+ ..... .++|+||+|+++|++++++|+|+|..++ +.+|||||+|+|.+|+.|++++.
T Consensus 266 g~DL~~~~~Isl~eAl~G~~~~i~~ldG~~~i~ip~~~~~g~~~ri~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~ 345 (374)
T PRK14293 266 GINILSEIKISYLQAILGDTLEVDTVDGPVELTIPAGTQPNTVLTLENKGVPRLGNPVARGDHLITVKVKIPTRISDEER 345 (374)
T ss_pred hhceEEEeccCHHHHhCCCEEEecCCCCCEEEEeCCCCCCCCEEEECCCCCCCCCCCCCcCCEEEEEEEECCCCCCHHHH
Confidence 7333 33322 2579999999999999999999997654 35899999999999999999998
Q ss_pred CceeEE
Q psy2902 837 DLHYEM 842 (945)
Q Consensus 837 dl~~~~ 842 (945)
+++.++
T Consensus 346 ~l~~~l 351 (374)
T PRK14293 346 ELLEKL 351 (374)
T ss_pred HHHHHH
Confidence 887654
No 96
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.67 E-value=1.9e-15 Score=170.82 Aligned_cols=308 Identities=15% Similarity=0.143 Sum_probs=192.9
Q ss_pred EEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeC---------CcEEecHHHHHhhhhCCCchhHHHHHhhCC
Q psy2902 74 IGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQEN---------GEILVGAPAKRQAVTNPKNTIYAAKRLIGR 144 (945)
Q Consensus 74 iGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~---------~~~~~G~~A~~~~~~~~~~~i~~~k~llg~ 144 (945)
|.||+||.++++++..++.|..+. ||+++...+ ...++|.+|...... .
T Consensus 2 iViD~Gs~~~r~G~a~~~~p~~~~--------ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~-~------------- 59 (371)
T cd00012 2 VVIDNGSGTIKAGFAGEDAPRVVF--------PSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGL-G------------- 59 (371)
T ss_pred EEEECCCCeEEEEeCCCCCCceEe--------eccceeecCcccccccCCCceEEchhhhhCCCC-c-------------
Confidence 789999999999998776565443 666665432 345677766532100 0
Q ss_pred CCCcHHHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHH
Q psy2902 145 KFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATK 224 (945)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~ 224 (945)
-....++.+..+...+.+..+++++....... ...-..+++++|..++..+|+.+.
T Consensus 60 -----------------------~~~~~P~~~G~i~d~~~~e~~~~~~~~~~l~~-~~~~~~vvl~~p~~~~~~~r~~~~ 115 (371)
T cd00012 60 -----------------------LELIYPIEHGIVVDWDDMEKIWDHLFFNELKV-NPEEHPVLLTEPPLNPKSNREKTT 115 (371)
T ss_pred -----------------------eEEcccccCCEEeCHHHHHHHHHHHHHHhcCC-CCCCCceEEecCCCCCHHHHHHHH
Confidence 00112223334455566677777776543211 122457899999999988888886
Q ss_pred H-HHHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHH
Q psy2902 225 D-AGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFD 303 (945)
Q Consensus 225 ~-Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD 303 (945)
+ +.+..|++.+.++++|.+|+++++. .+.+|+|+|+++++++.+.- +.. +........+||.++|
T Consensus 116 e~lfe~~~~~~v~~~~~~~~a~~~~g~-------~~~lVVDiG~~~t~i~pv~~------G~~-~~~~~~~~~~GG~~l~ 181 (371)
T cd00012 116 EIMFETFNVPALYVAIQAVLSLYASGR-------TTGLVVDSGDGVTHVVPVYD------GYV-LPHAIKRLDLAGRDLT 181 (371)
T ss_pred HHhhccCCCCEEEEechHHHHHHhcCC-------CeEEEEECCCCeeEEEEEEC------CEE-chhhheeccccHHHHH
Confidence 6 4677999999999999999999865 56899999999999998863 221 1112233568999999
Q ss_pred HHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCccee--------eeeceeeccCCCCeEEEEEEcHHHH
Q psy2902 304 QRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTE--------INEPYIAMSNGAPVHLNLKITRAKL 375 (945)
Q Consensus 304 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~--------i~i~~~~~~~~~~~~~~~~itr~~~ 375 (945)
+.|.+++..+... .+.. .-...++.+|+.+....... ...........-+....+.++.+.|
T Consensus 182 ~~l~~~l~~~~~~---~~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~~~~er~ 251 (371)
T cd00012 182 RYLKELLRERGYE---LNSS-------DEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPDGRTIKVGNERF 251 (371)
T ss_pred HHHHHHHHhcCCC---ccch-------hHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCCCeEEEEChHHh
Confidence 9999988654310 0111 11344666666654321100 0000000000001123456665543
Q ss_pred ---HHHHHH-----HHHHHHHHHHHHHHHcCCCC--CCCCcEEEecCccccHHHHHHHHHHhCC----------CCCCCC
Q psy2902 376 ---ELLVDE-----LITRTIEPCRIAIKDAGIKV--SDINDIILVGGMTRMPKVQEKVKEFFGK----------DPRRDI 435 (945)
Q Consensus 376 ---e~~~~~-----~i~~i~~~i~~~l~~~~~~~--~~i~~ViLvGG~s~~p~v~~~l~~~fg~----------~~~~~~ 435 (945)
|.++.| ....+.+.|.++++....+. .-.+.|+|+||+|++|.+.+.|.+.+.. .+....
T Consensus 252 ~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~ 331 (371)
T cd00012 252 RAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPP 331 (371)
T ss_pred hChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCC
Confidence 122333 12366777888887654322 2357899999999999999999988852 123456
Q ss_pred CCCchhhhhHHHhhhh
Q psy2902 436 NPDEAVAVGAAIQGSV 451 (945)
Q Consensus 436 ~p~~avA~GAa~~a~~ 451 (945)
+|..++-.||+++|..
T Consensus 332 ~~~~~aw~G~si~as~ 347 (371)
T cd00012 332 ERKYSVWLGGSILASL 347 (371)
T ss_pred CccccEEeCchhhcCc
Confidence 7889999999999964
No 97
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=2.9e-16 Score=175.15 Aligned_cols=151 Identities=25% Similarity=0.424 Sum_probs=123.6
Q ss_pred CCCCCCCccceeeccccccccccceeeEeeccc--------------cccCCCCCccccccCc---------CcccCCCC
Q psy2902 683 NNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS--------------WDICKSCYGNGAKKGT---------SPISCFTC 739 (945)
Q Consensus 683 ~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~--------------~~~C~~C~G~G~~~~~---------~~~~C~~C 739 (945)
.++.+....+.++|++.+.+.....+......| ...|+.|+|+|..... ..++|+.|
T Consensus 110 ~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C 189 (371)
T PRK14292 110 ARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTC 189 (371)
T ss_pred cCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCC
Confidence 356788899999999999998888777776554 4689999999986532 35799999
Q ss_pred CCCceEeEeeceeeeeecCCCCCCceEE------------------------------------------eecCCcccCC
Q psy2902 740 SGQGQVRMQQGFFSIQQTCPKCQGAGKV------------------------------------------IPHPCLDCNG 777 (945)
Q Consensus 740 ~G~G~~~~~~~~~~~~~~C~~C~G~g~~------------------------------------------~~~~c~~c~G 777 (945)
+|.|.. +...|+.|.|+|++ .+|+-|+|.|
T Consensus 190 ~G~G~~--------~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~G~G~~~~~~~GDL~v~i~v~~h~~f~r~g 261 (371)
T PRK14292 190 RGEGQI--------ITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAGMGNEGPGGNGDLYVHIEMEPHPELRREQ 261 (371)
T ss_pred ccccee--------cCCCCCCCCCceEEeecceEEEEECCCCCCCcEEEEecCcCCCCCCCCCEEEEEEEecCCccccch
Confidence 999998 78999999999962 5688899988
Q ss_pred CceEe---------------eeee----EEEEeecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCCc
Q psy2902 778 IGRIK---------------RNKT----LEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDL 838 (945)
Q Consensus 778 ~g~~~---------------~~~~----l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl 838 (945)
..+.. ...+ ..|+||+|+++|++++|+|+|+|..++..+|||||+|+|.+|+.|+.++..+
T Consensus 262 ~dL~~~~~isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~l 341 (371)
T PRK14292 262 EHLIYEARIGFAKAALGGQITVPTLDGPQVIEVKPGTQHGDLHRLRGQGMPRLQGAGTGDLIVEYEIAVPKQLSPEAREA 341 (371)
T ss_pred hceeEEeccCHHHHhCCCeEEEECCCCCEEEecCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHH
Confidence 44333 3332 3799999999999999999999977666789999999999999998888766
Q ss_pred eeE
Q psy2902 839 HYE 841 (945)
Q Consensus 839 ~~~ 841 (945)
+..
T Consensus 342 l~~ 344 (371)
T PRK14292 342 LEA 344 (371)
T ss_pred HHH
Confidence 543
No 98
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.65 E-value=1.7e-16 Score=177.20 Aligned_cols=150 Identities=22% Similarity=0.413 Sum_probs=119.1
Q ss_pred CCCCCCccceeeccccccccccceeeEeeccc------------cccCCCCCccccccC---------cCcccCCCCCCC
Q psy2902 684 NKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS------------WDICKSCYGNGAKKG---------TSPISCFTCSGQ 742 (945)
Q Consensus 684 ~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~------------~~~C~~C~G~G~~~~---------~~~~~C~~C~G~ 742 (945)
++.+....+.++|+..|.+.....+......| ..+|+.|+|+|.... ..+++|+.|+|+
T Consensus 122 rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~ 201 (421)
T PTZ00037 122 RGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQ 201 (421)
T ss_pred CCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCCCCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCc
Confidence 35677888999999999888877777776665 378999999997422 246799999999
Q ss_pred ceEeEeeceeeeeecCCCCCCceEE-------------------------------------------eecCCcccCCCc
Q psy2902 743 GQVRMQQGFFSIQQTCPKCQGAGKV-------------------------------------------IPHPCLDCNGIG 779 (945)
Q Consensus 743 G~~~~~~~~~~~~~~C~~C~G~g~~-------------------------------------------~~~~c~~c~G~g 779 (945)
|++ +....+|+.|+|.|++ .+|+.|+|.|..
T Consensus 202 G~~------i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I~~~G~Gd~~~~~~pGDLiv~I~~~ph~~F~R~G~D 275 (421)
T PTZ00037 202 GKI------IPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGEADEKPNEIPGNVVFILNEKPHDTFKREGGD 275 (421)
T ss_pred cee------ccccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEEEEecccCCCCCCCCCcEEEEEEecCCCCcEEeCCe
Confidence 998 2235889999999972 679999999955
Q ss_pred eEee--------------------eeeEEEEeecC--CCCCeEEEEcCCCCCCCCC-CCCccEEEEEEEecC--Cccccc
Q psy2902 780 RIKR--------------------NKTLEVKIPAG--IENNMRIRSTGNGEPGLNG-GSNGNLYIEIHIKPH--KVFERD 834 (945)
Q Consensus 780 ~~~~--------------------~~~l~v~ip~G--~~~g~~i~~~g~G~~~~~~-~~~Gdl~i~i~v~~~--~~~~r~ 834 (945)
+..+ .+.+.|+||+| +++|++++|+|+|||..+. +.+|||||+|+|..| ..++.+
T Consensus 276 L~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~pg~~~~I~geGmP~~~~~~~rGDL~V~~~V~~P~~~~Ls~~ 355 (421)
T PTZ00037 276 LFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFPVDRKFTNE 355 (421)
T ss_pred EEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccCCCcEEEeCCCCcccCCCCCCCCCEEEEEEEEcCCCCCCCHH
Confidence 4444 33457999999 9999999999999997553 468999999999999 788776
Q ss_pred CCCce
Q psy2902 835 GDDLH 839 (945)
Q Consensus 835 g~dl~ 839 (945)
+..++
T Consensus 356 qk~ll 360 (421)
T PTZ00037 356 EKEIL 360 (421)
T ss_pred HHHHH
Confidence 65443
No 99
>KOG0712|consensus
Probab=99.62 E-value=9.2e-16 Score=161.30 Aligned_cols=138 Identities=26% Similarity=0.464 Sum_probs=117.0
Q ss_pred CCCCCccceeeccccccccccceeeEeecccc------------ccCCCCCccccccCc----------CcccCCCCCCC
Q psy2902 685 KGSNGKDLRYNLEITLEQAAYGFNTSIRVPSW------------DICKSCYGNGAKKGT----------SPISCFTCSGQ 742 (945)
Q Consensus 685 ~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~------------~~C~~C~G~G~~~~~----------~~~~C~~C~G~ 742 (945)
+.+..+++.++|+..|.+.........+..|. ..|+.|.|+|....+ .+..|..|+|+
T Consensus 100 g~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~ 179 (337)
T KOG0712|consen 100 GKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGS 179 (337)
T ss_pred CCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccccccccceeEeccCCCc
Confidence 56889999999999999988888888877765 679999999987543 57899999999
Q ss_pred ceEeEeeceeeeeecCCCCCCceEE-------------------------------------------eecCCcccCCCc
Q psy2902 743 GQVRMQQGFFSIQQTCPKCQGAGKV-------------------------------------------IPHPCLDCNGIG 779 (945)
Q Consensus 743 G~~~~~~~~~~~~~~C~~C~G~g~~-------------------------------------------~~~~c~~c~G~g 779 (945)
|.. +...+.|+.|.|.+++ .+|+.|.|.|.+
T Consensus 180 G~~------~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki~f~geadea~g~~pgD~vl~i~~k~h~~F~Rrg~d 253 (337)
T KOG0712|consen 180 GET------ISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKITFKGEADEAPGTKPGDVVLLIDQKEHPGFDRRGSD 253 (337)
T ss_pred ccc------ccccccCcccccchhhhhhheeeccccCCCcccceeeeeeeeeecCCCcCccEEEEecccccccceecccc
Confidence 986 3468899999999972 458899999855
Q ss_pred eEee--------------------eeeEEEEeecC--CCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCC
Q psy2902 780 RIKR--------------------NKTLEVKIPAG--IENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHK 829 (945)
Q Consensus 780 ~~~~--------------------~~~l~v~ip~G--~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~ 829 (945)
+... .+.+++.++|| +.+|++.++.|+|||..+.+ .|||||.+.|+.|+
T Consensus 254 L~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~~~v~~~gmp~~~~~-~g~lyi~~~v~fp~ 324 (337)
T KOG0712|consen 254 LYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPGDTKRVEGEGMPIFRNP-KGDLYIKFEVKFPK 324 (337)
T ss_pred cceeeecchhhccccceEEEEccCCceEEEecCCCceeChhHEEeecCCCcccccCC-CCcEEEEEEEEcCC
Confidence 5444 44567999999 99999999999999987755 99999999999998
No 100
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.61 E-value=1.7e-14 Score=163.27 Aligned_cols=303 Identities=16% Similarity=0.164 Sum_probs=185.3
Q ss_pred eEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCC--------cEEecHHHHHhhhhCCCchhHHHHHhhCC
Q psy2902 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENG--------EILVGAPAKRQAVTNPKNTIYAAKRLIGR 144 (945)
Q Consensus 73 viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~--------~~~~G~~A~~~~~~~~~~~i~~~k~llg~ 144 (945)
.|.||+||.++++++..+..|.++. ||+++...++ ..++|.+|.... ...
T Consensus 3 ~iviD~Gs~~~k~G~~~~~~P~~~~--------ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~----~~~---------- 60 (373)
T smart00268 3 AIVIDNGSGTIKAGFAGEDEPQVVF--------PSIVGRPKDGKGMVGDAKDTFVGDEAQEKR----GGL---------- 60 (373)
T ss_pred eEEEECCCCcEEEeeCCCCCCcEEc--------cceeeEecccccccCCCcceEecchhhhcC----CCc----------
Confidence 5999999999999998777676554 8888775432 235666553210 000
Q ss_pred CCCcHHHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHH
Q psy2902 145 KFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATK 224 (945)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~ 224 (945)
....++.+..+...+.+..+++++...... ....-..++++.|...+..+|+.+.
T Consensus 61 ------------------------~~~~P~~~G~i~d~~~~e~i~~~~~~~~l~-~~~~~~~vll~~p~~~~~~~r~~~~ 115 (373)
T smart00268 61 ------------------------ELKYPIEHGIVENWDDMEKIWDYTFFNELR-VEPEEHPVLLTEPPMNPKSNREKIL 115 (373)
T ss_pred ------------------------eecCCCcCCEEeCHHHHHHHHHHHHhhhcC-CCCccCeeEEecCCCCCHHHHHHHH
Confidence 011222334455677777788887764211 1112356899999999899999998
Q ss_pred HHH-HHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHH
Q psy2902 225 DAG-RIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFD 303 (945)
Q Consensus 225 ~Aa-~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD 303 (945)
+.+ +..|++.+.++.+|.||+++++ ..+.+|+|+|+++++++.+.- +.. +........+||.++|
T Consensus 116 e~lfE~~~~~~v~~~~~~~~a~~~~g-------~~~~lVVDiG~~~t~v~pv~~------G~~-~~~~~~~~~~GG~~l~ 181 (373)
T smart00268 116 EIMFETFNFPALYIAIQAVLSLYASG-------RTTGLVIDSGDGVTHVVPVVD------GYV-LPHAIKRIDIAGRDLT 181 (373)
T ss_pred HHhhccCCCCeEEEeccHHHHHHhCC-------CCEEEEEecCCCcceEEEEEC------CEE-chhhheeccCcHHHHH
Confidence 776 5779999999999999999986 356899999999999998863 111 1112223468999999
Q ss_pred HHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcce---------------eeeeceeeccCCCCeEEEE
Q psy2902 304 QRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQT---------------EINEPYIAMSNGAPVHLNL 368 (945)
Q Consensus 304 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~---------------~i~i~~~~~~~~~~~~~~~ 368 (945)
+.|.+++...- ..... ..-...++.+|+.+...... .....+...+ ...+
T Consensus 182 ~~l~~~l~~~~-----~~~~~-----~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lpd-----g~~~ 246 (373)
T smart00268 182 DYLKELLSERG-----YQFNS-----SAEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYELPD-----GNTI 246 (373)
T ss_pred HHHHHHHHhcC-----CCCCc-----HHHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEECCC-----CCEE
Confidence 99998886621 00000 01123455555554321100 0000010001 1123
Q ss_pred EEcHHHH---HHHHHHH-----HHHHHHHHHHHHHHcCCCCC--CCCcEEEecCccccHHHHHHHHHHhC------CC--
Q psy2902 369 KITRAKL---ELLVDEL-----ITRTIEPCRIAIKDAGIKVS--DINDIILVGGMTRMPKVQEKVKEFFG------KD-- 430 (945)
Q Consensus 369 ~itr~~~---e~~~~~~-----i~~i~~~i~~~l~~~~~~~~--~i~~ViLvGG~s~~p~v~~~l~~~fg------~~-- 430 (945)
.+..+.| |.++.|. ...+.+.|.++|..+..+.. -.+.|+|+||+|++|.+.++|.+.+. .+
T Consensus 247 ~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~ 326 (373)
T smart00268 247 KVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVK 326 (373)
T ss_pred EEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeE
Confidence 3333332 1222221 23566677777776543211 24679999999999999999988872 11
Q ss_pred CCCCCCCCchhhhhHHHhhhh
Q psy2902 431 PRRDINPDEAVAVGAAIQGSV 451 (945)
Q Consensus 431 ~~~~~~p~~avA~GAa~~a~~ 451 (945)
+....++..++=.||+++|..
T Consensus 327 v~~~~~~~~~~W~G~silas~ 347 (373)
T smart00268 327 VIAPPERKYSVWLGGSILASL 347 (373)
T ss_pred EecCCCCccceEeCcccccCc
Confidence 223445667778898888864
No 101
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.58 E-value=9e-15 Score=138.50 Aligned_cols=196 Identities=29% Similarity=0.389 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCC
Q psy2902 188 VLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGG 267 (945)
Q Consensus 188 ~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~Gg 267 (945)
+.+.+++.+++.++..+.+..-++|..-.....+...+..+.||++++..++||+|||.-..++. -.|+|+||
T Consensus 77 iVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~d-------g~VVDiGG 149 (277)
T COG4820 77 IVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLDD-------GGVVDIGG 149 (277)
T ss_pred HHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccCC-------CcEEEeCC
Confidence 67899999999999999999889998776666677778889999999999999999998776655 37889999
Q ss_pred cceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCc
Q psy2902 268 GTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSK 347 (945)
Q Consensus 268 gT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~ 347 (945)
||+-+++++- .. ++. ..|..-||.+++-.|+- .++++ .++||+.|..-...
T Consensus 150 GTTGIsi~kk----Gk----Viy-~ADEpTGGtHmtLvlAG--------~ygi~-----------~EeAE~~Kr~~k~~- 200 (277)
T COG4820 150 GTTGISIVKK----GK----VIY-SADEPTGGTHMTLVLAG--------NYGIS-----------LEEAEQYKRGHKKG- 200 (277)
T ss_pred CcceeEEEEc----Cc----EEE-eccCCCCceeEEEEEec--------ccCcC-----------HhHHHHhhhccccc-
Confidence 9999999974 22 122 22455689888766652 23333 56777777542111
Q ss_pred ceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHh
Q psy2902 348 QTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFF 427 (945)
Q Consensus 348 ~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f 427 (945)
+|.-..+.|++++..+.+...++..+ +..++|+||+|.-|.+.+.+++.|
T Consensus 201 -------------------------~Eif~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~Fe~~l 250 (277)
T COG4820 201 -------------------------EEIFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELFEKQL 250 (277)
T ss_pred -------------------------hhcccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHHHHHh
Confidence 12223467888888888888887665 468999999999999999999999
Q ss_pred CCCCCCCCCCCchhhhhHHHhh
Q psy2902 428 GKDPRRDINPDEAVAVGAAIQG 449 (945)
Q Consensus 428 g~~~~~~~~p~~avA~GAa~~a 449 (945)
+.++..+..|....-+|-|+-+
T Consensus 251 ~l~v~~P~~p~y~TPLgIA~sg 272 (277)
T COG4820 251 ALQVHLPQHPLYMTPLGIASSG 272 (277)
T ss_pred ccccccCCCcceechhhhhhcc
Confidence 9999988889888888877644
No 102
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.44 E-value=7.1e-12 Score=138.56 Aligned_cols=210 Identities=16% Similarity=0.217 Sum_probs=135.4
Q ss_pred CCCcEE--EEcCCCCCHHH-HHHHHHHHHHc------------CCccceecchhHHHHHHhccCCC------CCCCceEE
Q psy2902 203 EITEAV--ITVPAYFNDAQ-RQATKDAGRIA------------GLEVKRIINEPTAAALAFGLDKS------GKSDRNIV 261 (945)
Q Consensus 203 ~~~~~V--itVPa~~~~~q-r~~l~~Aa~~A------------Gl~~v~li~Ep~AAAl~~~~~~~------~~~~~~vl 261 (945)
.+..++ ...|..+-..+ ++.+++..... -+..+.+++||.+|.+.+..+.. ......++
T Consensus 109 ~~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~il 188 (344)
T PRK13917 109 EVVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVS 188 (344)
T ss_pred CcceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEE
Confidence 344444 58898875444 36676654321 12346689999999887765421 12446789
Q ss_pred EEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHH
Q psy2902 262 VYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKI 341 (945)
Q Consensus 262 VvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~ 341 (945)
|+|+|++|+|++++.- ..+. ...++....|..++.+.+.+.+..+.. +..+ +. ..++++
T Consensus 189 vIDIG~~TtD~~v~~~------~~~~-~~~s~s~~~G~~~~~~~I~~~i~~~~~---~~~~--~~-------~~ie~~-- 247 (344)
T PRK13917 189 VIDFGSGTTDLDTIQN------LKRV-EEESFVIPKGTIDVYKRIASHISKKEE---GASI--TP-------YMLEKG-- 247 (344)
T ss_pred EEEcCCCcEEEEEEeC------cEEc-ccccccccchHHHHHHHHHHHHHhhCC---CCCC--CH-------HHHHHH--
Confidence 9999999999999852 2221 233344567999999888888754321 2221 11 112222
Q ss_pred HhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHH
Q psy2902 342 ELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQE 421 (945)
Q Consensus 342 ~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~ 421 (945)
|... .+.+. ... .+.+ ++++.++++++++++...+...+.. ..+++.|+|+||++++ +++
T Consensus 248 -l~~g---~i~~~-----~~~----~id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~ 307 (344)
T PRK13917 248 -LEYG---ACKLN-----QKT----VIDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFD 307 (344)
T ss_pred -HHcC---cEEeC-----CCc----eEeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHH
Confidence 2111 11110 000 1222 4667778888888888888777753 3468999999999987 889
Q ss_pred HHHHHhCCCCCCCCCCCchhhhhHHHhhhhccC
Q psy2902 422 KVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSG 454 (945)
Q Consensus 422 ~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~~ 454 (945)
.|++.|+.- ....||..|.|+|...+|..+.+
T Consensus 308 ~lk~~f~~~-~~~~~p~~ANa~G~~~~g~~~~~ 339 (344)
T PRK13917 308 SLSHWYSDV-EKADESQFANVRGYYKYGELLKN 339 (344)
T ss_pred HHHHHcCCe-EEcCChHHHHHHHHHHHHHHHhc
Confidence 999999753 56789999999999999986655
No 103
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.44 E-value=1.3e-11 Score=141.03 Aligned_cols=292 Identities=16% Similarity=0.120 Sum_probs=173.8
Q ss_pred eEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCC------------cEEecHHHHHhhhhCCCchhHHHHH
Q psy2902 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENG------------EILVGAPAKRQAVTNPKNTIYAAKR 140 (945)
Q Consensus 73 viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~------------~~~~G~~A~~~~~~~~~~~i~~~k~ 140 (945)
.|.||+||.++++++..+..|.++ +||+++..... ..++|.+|.... .
T Consensus 6 ~iViD~GS~~~k~G~ag~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~~----~-------- 65 (414)
T PTZ00280 6 VVVIDNGTGYTKMGYAGNTEPTYI--------IPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAAS----K-------- 65 (414)
T ss_pred eEEEECCCCceEeeeCCCCCCCEE--------ecceeEEeccccccccccccccCCEEEcchhhhCc----C--------
Confidence 599999999999999977777654 37777654221 234454443210 0
Q ss_pred hhCCCCCcHHHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHH
Q psy2902 141 LIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQR 220 (945)
Q Consensus 141 llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr 220 (945)
.-....++....+...+.+..++.++...... ....-..+++|.|..++..+|
T Consensus 66 --------------------------~~~l~~Pi~~G~I~dwd~~e~l~~~~~~~~L~-~~p~~~~vllte~~~~~~~~R 118 (414)
T PTZ00280 66 --------------------------SYTLTYPMKHGIVEDWDLMEKFWEQCIFKYLR-CEPEEHYFILTEPPMNPPENR 118 (414)
T ss_pred --------------------------CcEEecCccCCEeCCHHHHHHHHHHHHHHhhc-cCCCCCceEEeeCCCCcHHHH
Confidence 00122233444556677777788776543211 111234579999999999999
Q ss_pred HHHHHHH-HHcCCccceecchhHHHHHHhccCCCC---CCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCC
Q psy2902 221 QATKDAG-RIAGLEVKRIINEPTAAALAFGLDKSG---KSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTF 296 (945)
Q Consensus 221 ~~l~~Aa-~~AGl~~v~li~Ep~AAAl~~~~~~~~---~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~ 296 (945)
+.+.+.+ +..+++.+.+..+|.+|++++...... ....+-||||+|.++++++.+.- +..-. ....-..
T Consensus 119 e~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~~------G~~l~-~~~~~~~ 191 (414)
T PTZ00280 119 EYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVD------GYVIG-SSIKHIP 191 (414)
T ss_pred HHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEEC------CEEcc-cceEEec
Confidence 9987765 555889999999999999987432210 02345699999999999988752 21111 1111246
Q ss_pred CchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcce-------------eeeeceeeccCCCC
Q psy2902 297 LGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQT-------------EINEPYIAMSNGAP 363 (945)
Q Consensus 297 lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~-------------~i~i~~~~~~~~~~ 363 (945)
+||.++|+.|.++|.++.. .+... .....++.+|+.++..... .....+...+....
T Consensus 192 ~GG~~lt~~L~~lL~~~~~-----~~~~~-----~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~~g 261 (414)
T PTZ00280 192 LAGRDITNFIQQMLRERGE-----PIPAE-----DILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSVTK 261 (414)
T ss_pred CcHHHHHHHHHHHHHHcCC-----CCCcH-----HHHHHHHHHHHhcCcccCcHHHHHHHhhcCcccccceEECCCCCCC
Confidence 7999999999998865321 11111 1123466666665432110 00000111110001
Q ss_pred eEEEEEEcHHHHH---HHHHHHH------HHHHHHHHHHHHHcCCCC--CCCCcEEEecCccccHHHHHHHHHHhC
Q psy2902 364 VHLNLKITRAKLE---LLVDELI------TRTIEPCRIAIKDAGIKV--SDINDIILVGGMTRMPKVQEKVKEFFG 428 (945)
Q Consensus 364 ~~~~~~itr~~~e---~~~~~~i------~~i~~~i~~~l~~~~~~~--~~i~~ViLvGG~s~~p~v~~~l~~~fg 428 (945)
....+.+..+.|. -++.|.+ ..+.++|.+.+..+..+. .-.+.|+|+||+|.+|.+.++|++.+.
T Consensus 262 ~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~ 337 (414)
T PTZ00280 262 KPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVR 337 (414)
T ss_pred CccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHH
Confidence 1235667766653 2343422 134566777777654332 124679999999999999999988874
No 104
>PTZ00452 actin; Provisional
Probab=99.36 E-value=5.1e-11 Score=133.67 Aligned_cols=304 Identities=15% Similarity=0.131 Sum_probs=181.1
Q ss_pred ceEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCC---------cEEecHHHHHhhhhCCCchhHHHHHhh
Q psy2902 72 KIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENG---------EILVGAPAKRQAVTNPKNTIYAAKRLI 142 (945)
Q Consensus 72 ~viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~---------~~~~G~~A~~~~~~~~~~~i~~~k~ll 142 (945)
..|-||+|+.++++++..+..|.++. ||+|...... ..++|.+|.... .
T Consensus 6 ~~vViD~Gs~~~k~G~age~~P~~i~--------ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~~------~-------- 63 (375)
T PTZ00452 6 PAVVIDNGSGYCKIGIAGDDAPTSCF--------PAIVGRSKQNDGIFSTFNKEYYVGEEAQAKR------G-------- 63 (375)
T ss_pred CEEEEECCCCeEEEeeCCCCCcCEEe--------cceeEEECCccccccccccceEEChhhhccc------c--------
Confidence 46899999999999999888886553 6666553221 234454432100 0
Q ss_pred CCCCCcHHHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHH
Q psy2902 143 GRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQA 222 (945)
Q Consensus 143 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~ 222 (945)
.+ ....++....+...+.+..++.++..... .....-..+++|-|...+..+|+.
T Consensus 64 ----------------~~--------~l~~Pi~~G~I~dwd~~e~iw~~~f~~~l-~v~p~~~pvlitE~~~~~~~~Re~ 118 (375)
T PTZ00452 64 ----------------VL--------AIKEPIQNGIINSWDDIEIIWHHAFYNEL-CMSPEDQPVFMTDAPMNSKFNRER 118 (375)
T ss_pred ----------------Cc--------EEcccCcCCEEcCHHHHHHHHHHHHHhhc-CCCcccCceeeecCCCCCHHHHHH
Confidence 00 01223344455666766667777653321 122223568899999999999998
Q ss_pred HHHHH-HHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHH
Q psy2902 223 TKDAG-RIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGED 301 (945)
Q Consensus 223 l~~Aa-~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~ 301 (945)
|.+.+ +..+++.+.+...+.+++++++. .+-||||+|.+.++++-+.- +..- .....-..+||.+
T Consensus 119 l~eilFE~~~vp~~~~~~~~~lslya~g~-------~tglVVDiG~~~t~v~PV~d------G~~l-~~~~~r~~~gG~~ 184 (375)
T PTZ00452 119 MTQIMFETFNTPCLYISNEAVLSLYTSGK-------TIGLVVDSGEGVTHCVPVFE------GHQI-PQAITKINLAGRL 184 (375)
T ss_pred HHHHHhhccCCceEEEechHHHHHHHCCC-------ceeeeecCCCCcceEEEEEC------CEEe-ccceEEeeccchH
Confidence 86664 66788889999999999998754 34699999999999987752 2111 1111224579999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcce------------eeeeceeeccCCCCeEEEEE
Q psy2902 302 FDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQT------------EINEPYIAMSNGAPVHLNLK 369 (945)
Q Consensus 302 iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~------------~i~i~~~~~~~~~~~~~~~~ 369 (945)
+++.|.+.|.++ +..+.... . ...++.+|+.++..... ....++...+ +-.+.
T Consensus 185 lt~~L~~lL~~~-----~~~~~~~~-~----~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~LPD-----g~~i~ 249 (375)
T PTZ00452 185 CTDYLTQILQEL-----GYSLTEPH-Q----RIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKLPD-----GNILT 249 (375)
T ss_pred HHHHHHHHHHhc-----CCCCCCHH-H----HHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEECCC-----CCEEE
Confidence 999888877542 11111110 0 22345555555432110 0000111111 22456
Q ss_pred EcHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCCC--CCCCCcEEEecCccccHHHHHHHHHHhCC------C--C
Q psy2902 370 ITRAKL---ELLVDELI-----TRTIEPCRIAIKDAGIK--VSDINDIILVGGMTRMPKVQEKVKEFFGK------D--P 431 (945)
Q Consensus 370 itr~~~---e~~~~~~i-----~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~v~~~l~~~fg~------~--~ 431 (945)
+..+.| |-++.|.+ ..+.+++.+.+..+... ..-.+.|+|+||+|.+|.+.++|+..+.. + +
T Consensus 250 l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v 329 (375)
T PTZ00452 250 IKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQV 329 (375)
T ss_pred eehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCceeEE
Confidence 666655 22333422 13456666666665432 12247899999999999999999877621 1 2
Q ss_pred CCCCCCCchhhhhHHHhhhh
Q psy2902 432 RRDINPDEAVAVGAAIQGSV 451 (945)
Q Consensus 432 ~~~~~p~~avA~GAa~~a~~ 451 (945)
..+.++..++=+|++++|..
T Consensus 330 ~~~~~r~~~aW~GgSilasl 349 (375)
T PTZ00452 330 AAPPDRRFSAWIGGSIQCTL 349 (375)
T ss_pred ecCCCcceeEEECchhhcCc
Confidence 22345566778899998863
No 105
>PRK15027 xylulokinase; Provisional
Probab=99.34 E-value=1.1e-11 Score=144.94 Aligned_cols=300 Identities=14% Similarity=0.103 Sum_probs=164.5
Q ss_pred CCCchhHHHHHhhCCCCCcHHHHhhhcCCCeeEEecCCCceEEEECCeeeC-hhhHHHHHHHHHH-----HHHHHHhCCC
Q psy2902 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLA-PPQISAEVLRKMK-----KTAEDYLGGE 203 (945)
Q Consensus 130 ~~~~~i~~~k~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ev~a~~L~~l~-----~~a~~~~~~~ 203 (945)
.+....+...+++|.+.++|++.+...++.. ..+.+.+.+.|...+ ........+-.+. +.....++..
T Consensus 121 ~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~~~-----~~dyl~~~LTG~~~~d~s~as~t~l~d~~~~~w~~~ll~~~gi~ 195 (484)
T PRK15027 121 NLMMPGFTAPKLLWVQRHEPEIFRQIDKVLL-----PKDYLRLRMTGEFASDMSDAAGTMWLDVAKRDWSDVMLQACHLS 195 (484)
T ss_pred CCcCccchHHHHHHHHHhCHHHHHHhhhhcC-----hHHHHHhhhcCCccccHHHhhcccccccccCCCcHHHHHHhCCC
Confidence 3444455667888888888888776654321 123344444443222 1111111110000 0011112211
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHHHHcCCc---cceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEee
Q psy2902 204 ITEAVITVPAYFNDAQRQATKDAGRIAGLE---VKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADV 280 (945)
Q Consensus 204 ~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~---~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~ 280 (945)
.. .+.-+..-++.......++|+..||+ ++....+..|++++.+... ...+++-+|.+.+-..+..-...
T Consensus 196 ~~--~lP~v~~~~~~~G~l~~~~a~~~GL~~~pV~~g~~D~~aa~~g~g~~~-----~g~~~~s~GTs~~~~~~~~~~~~ 268 (484)
T PRK15027 196 RD--QMPALYEGSEITGALLPEVAKAWGMATVPVVAGGGDNAAGAVGVGMVD-----ANQAMLSLGTSGVYFAVSEGFLS 268 (484)
T ss_pred HH--HCCCCCCCccccccccHHHHHHhCCCCCeEEecccHHHHHHhccCccc-----CCcEEEEecCceEEEEecCCccc
Confidence 00 11111112333455567888888874 4455678999999887653 23344456666553333221000
Q ss_pred cCCceEEEEEe--cCCCC-CchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceee
Q psy2902 281 DGEKQFEVLST--NGDTF-LGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIA 357 (945)
Q Consensus 281 ~~~~~~~vl~~--~~~~~-lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~ 357 (945)
.....+..... .+... .|+........+|+.+.+.. .. +..+.+.++++ .......+.+|++.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~W~~~~~~~-------~~---~~~~~~~a~~~----~~g~~gl~~~P~l~ 334 (484)
T PRK15027 269 KPESAVHSFCHALPQRWHLMSVMLSAASCLDWAAKLTGL-------SN---VPALIAAAQQA----DESAEPVWFLPYLS 334 (484)
T ss_pred CchhceeecceecCCceEEEEEehhhHHHHHHHHHHhCC-------cc---HHHHHHHHhhC----CCCCCceEEecccc
Confidence 11111111111 11111 13333444556788776531 01 22333333322 22223445666664
Q ss_pred cc---------CCCCeEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhC
Q psy2902 358 MS---------NGAPVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFG 428 (945)
Q Consensus 358 ~~---------~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg 428 (945)
.. .+...+++...++.+|.+.+-+.+......+.+.+++.+. .++.|+++||+++++.|.|++++.+|
T Consensus 335 G~r~P~~~~~arg~f~gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g 411 (484)
T PRK15027 335 GERTPHNNPQAKGVFFGLTHQHGPNELARAVLEGVGYALADGMDVVHACGI---KPQSVTLIGGGARSEYWRQMLADISG 411 (484)
T ss_pred cCCCcCCCCCcceEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CccEEEEeCcccCCHHHHHHHHHHhC
Confidence 21 1223455667789999998888887777777777876554 36899999999999999999999999
Q ss_pred CCCCCCCCCCchhhhhHHHhhhhccCCCCc
Q psy2902 429 KDPRRDINPDEAVAVGAAIQGSVLSGDRKD 458 (945)
Q Consensus 429 ~~~~~~~~p~~avA~GAa~~a~~~~~~~~~ 458 (945)
.++....+.+++.|+|||++|+...|..++
T Consensus 412 ~pv~~~~~~~~~~a~GaA~lA~~~~G~~~~ 441 (484)
T PRK15027 412 QQLDYRTGGDVGPALGAARLAQIAANPEKS 441 (484)
T ss_pred CeEEeecCCCcchHHHHHHHHHHhcCCcCC
Confidence 999666667778899999999987764443
No 106
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.33 E-value=4.7e-11 Score=136.43 Aligned_cols=309 Identities=16% Similarity=0.183 Sum_probs=181.1
Q ss_pred eEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCC----cEEecHHHHHhhhhCCCchhHHHHHhhCCCCCc
Q psy2902 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENG----EILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNE 148 (945)
Q Consensus 73 viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~----~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~ 148 (945)
.|-||+|+.++++++..+..|..+ +||.+....+. ...+|..+... .+.
T Consensus 6 ~vViD~Gs~~~k~G~age~~P~~v--------~ps~~~~~~~~~~~~~~~~g~~~~~~---~~~---------------- 58 (393)
T PF00022_consen 6 PVVIDNGSSTIKAGFAGEDLPRVV--------IPSVVGRPRDKNSSNDYYVGDEALSP---RSN---------------- 58 (393)
T ss_dssp EEEEEECSSEEEEEETTSSS-SEE--------EESEEEEESSSSSSSSCEETHHHHHT---GTG----------------
T ss_pred EEEEECCCceEEEEECCCCCCCCc--------CCCccccccccccceeEEeecccccc---hhh----------------
Confidence 689999999999999876666554 37777765432 35667663321 000
Q ss_pred HHHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHH-
Q psy2902 149 KEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAG- 227 (945)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa- 227 (945)
. .....+.+..+...+.+..++.++..... .....-..++++.|..++...|+.+.+.+
T Consensus 59 -----------~--------~~~~p~~~g~i~~~~~~e~i~~~~~~~~l-~~~~~~~~vll~~~~~~~~~~r~~l~e~lf 118 (393)
T PF00022_consen 59 -----------L--------ELRSPIENGVIVDWDALEEIWDYIFSNLL-KVDPSDHPVLLTEPPFNPRSQREKLAEILF 118 (393)
T ss_dssp -----------E--------EEEESEETTEESSHHHHHHHHHHHHHTTT--SSGGGSEEEEEESTT--HHHHHHHHHHHH
T ss_pred -----------e--------eeeeecccccccccccccccccccccccc-ccccccceeeeeccccCCchhhhhhhhhhh
Confidence 0 01122233344555666667777666431 12223456899999999999998886654
Q ss_pred HHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHH
Q psy2902 228 RIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRII 307 (945)
Q Consensus 228 ~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~ 307 (945)
+..+++.+.++.++.+|+++++... -||||+|.+.+.++-+.- +.. +........+||.+++..|.
T Consensus 119 E~~~~~~v~~~~~~~~a~~~~g~~t-------glVVD~G~~~t~v~pV~d------G~~-~~~~~~~~~~GG~~lt~~l~ 184 (393)
T PF00022_consen 119 EKFGVPSVYFIPSPLLALYASGRTT-------GLVVDIGYSSTSVVPVVD------GYV-LPHSIKRSPIGGDDLTEYLK 184 (393)
T ss_dssp HTS--SEEEEEEHHHHHHHHTTBSS-------EEEEEESSS-EEEEEEET------TEE--GGGBEEES-SHHHHHHHHH
T ss_pred cccccceeeeeeccccccccccccc-------ccccccceeeeeeeeeee------ccc-cccccccccccHHHHHHHHH
Confidence 5779999999999999999987653 699999999999988742 211 11111224679999999999
Q ss_pred HHHHHH-HHHHhCCCCc------cCHHHHHHHHHHHHHHHHHhcCCc---------------ceeeeeceeeccCCCCeE
Q psy2902 308 DYILDE-FNKINGIDLR------KDSIALQRIKASAERAKIELSSSK---------------QTEINEPYIAMSNGAPVH 365 (945)
Q Consensus 308 ~~l~~~-~~~~~~~~~~------~~~~~~~~L~~~~e~~K~~Ls~~~---------------~~~i~i~~~~~~~~~~~~ 365 (945)
++|..+ +.-....... ........-...++.+|+.+.... .....+| + .
T Consensus 185 ~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~lP----d-----g 255 (393)
T PF00022_consen 185 ELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYELP----D-----G 255 (393)
T ss_dssp HHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE-T----T-----S
T ss_pred HHHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccceecccc----c-----c
Confidence 888874 1110000000 001111112233444444432211 1112221 1 1
Q ss_pred EEEEEcHHHHHHHHHHHHH----------------HHHHHHHHHHHHcCCCCC--CCCcEEEecCccccHHHHHHHHHHh
Q psy2902 366 LNLKITRAKLELLVDELIT----------------RTIEPCRIAIKDAGIKVS--DINDIILVGGMTRMPKVQEKVKEFF 427 (945)
Q Consensus 366 ~~~~itr~~~e~~~~~~i~----------------~i~~~i~~~l~~~~~~~~--~i~~ViLvGG~s~~p~v~~~l~~~f 427 (945)
..+.+..+.| .+.+.+++ .+.++|.+++..+..+.. -.+.|+|+||+|++|.+.++|...+
T Consensus 256 ~~i~~~~er~-~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL 334 (393)
T PF00022_consen 256 QTIILGKERF-RIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQEL 334 (393)
T ss_dssp SEEEESTHHH-HHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHH
T ss_pred cccccccccc-cccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHHh
Confidence 2456665444 22333322 466778888877654322 1478999999999999999998877
Q ss_pred CC------C--CCCCC-CCCchhhhhHHHhhhhc
Q psy2902 428 GK------D--PRRDI-NPDEAVAVGAAIQGSVL 452 (945)
Q Consensus 428 g~------~--~~~~~-~p~~avA~GAa~~a~~~ 452 (945)
.. . +.... +|..++=.||+++|..-
T Consensus 335 ~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~ 368 (393)
T PF00022_consen 335 RSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLS 368 (393)
T ss_dssp HHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSG
T ss_pred hhhhhccccceeccCchhhhhcccccceeeeccc
Confidence 32 1 22334 78899999999999754
No 107
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=99.33 E-value=7.2e-12 Score=145.53 Aligned_cols=220 Identities=15% Similarity=0.132 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHcCC----ccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEee--cCCceEEEEE--
Q psy2902 219 QRQATKDAGRIAGL----EVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADV--DGEKQFEVLS-- 290 (945)
Q Consensus 219 qr~~l~~Aa~~AGl----~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~--~~~~~~~vl~-- 290 (945)
......++|+..|| +++....+..||+++.+.. .+. +++-+|.+ .+.+...... ..........
T Consensus 214 ~G~v~~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~g~~----~g~--~~~~~GTs--~~~~~~~~~~~~~~~~~~~~~~~~ 285 (465)
T TIGR02628 214 IGTLQNSAAAMLGLPVGVPVISAGHDTQFALFGSGAE----QNQ--PVLSSGTW--EILMARSQQVDTSLLSQYAGSTCE 285 (465)
T ss_pred ceeeCHHHHHHhCCCCCCCEEecCccHHHHHhccCCC----CCc--EEEeccch--hhheeccCcCCCCccccccccccc
Confidence 34455678888887 4566778888888887752 233 44455644 3322211100 0011110000
Q ss_pred --e-cCCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceee-eeceee-ccCCCCeE
Q psy2902 291 --T-NGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEI-NEPYIA-MSNGAPVH 365 (945)
Q Consensus 291 --~-~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i-~i~~~~-~~~~~~~~ 365 (945)
. .+-...++..+.....+|+++.|... +. .+...+..|.+.++++ .......+ ..|.+. ...+...+
T Consensus 286 ~~~~~g~~~~~~~~~~g~~~~W~~~~~~~~---~~-~~~~~~~~l~~~a~~~----~~g~~gl~~~~p~~~~~a~g~~~G 357 (465)
T TIGR02628 286 LDSQAGLYNPAMQWLASGVLEWVRKLFFTA---ET-PSDHYYQMMIEEARLI----ANGADGVVNFQCDLLSCGQGGIQG 357 (465)
T ss_pred cccCCceeeehhhhhhhhHHHHHHHHhcch---hh-ccccHHHHHHHHHHhC----CCCCCcceeecccCCcccceeEEC
Confidence 0 00011122233344568888776310 00 0111234444444444 22222334 344442 22333456
Q ss_pred EEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhH
Q psy2902 366 LNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGA 445 (945)
Q Consensus 366 ~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GA 445 (945)
++...++.+|.+.+.+.+......+.+.+++.+.. .++.|.++||+++++.|.+++++.||.++.+..+ .++.++||
T Consensus 358 l~~~~~~~~l~rAvlEgia~~~r~~~e~l~~~~~~--~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~-~e~~~lGa 434 (465)
T TIGR02628 358 LTLNTTRGHIYRAALEGLTAQLKRNLQMLEQIGQF--KASELLLVGGGSKNTLWNQIRANMLDIPVKVVDD-AETTVAGA 434 (465)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CcceEEEecCccCCHHHHHHhhhhcCCeeEeccC-CcchHHHH
Confidence 77788899999988888887777777888775321 3688999999999999999999999999975554 46889999
Q ss_pred HHhhhhccCCCC
Q psy2902 446 AIQGSVLSGDRK 457 (945)
Q Consensus 446 a~~a~~~~~~~~ 457 (945)
|+.|+...|..+
T Consensus 435 A~~a~~a~G~~~ 446 (465)
T TIGR02628 435 AMFGFYGVGEYN 446 (465)
T ss_pred HHHHHHhcCccC
Confidence 999998776433
No 108
>PTZ00281 actin; Provisional
Probab=99.30 E-value=9.8e-11 Score=131.82 Aligned_cols=303 Identities=14% Similarity=0.144 Sum_probs=180.3
Q ss_pred eEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCC---------cEEecHHHHHhhhhCCCchhHHHHHhhC
Q psy2902 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENG---------EILVGAPAKRQAVTNPKNTIYAAKRLIG 143 (945)
Q Consensus 73 viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~---------~~~~G~~A~~~~~~~~~~~i~~~k~llg 143 (945)
.|-||+|+.++++++..+..|..+. ||+|....+. ..++|.+|.... +
T Consensus 8 ~vViD~Gs~~~k~G~age~~P~~i~--------ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~---~------------ 64 (376)
T PTZ00281 8 ALVIDNGSGMCKAGFAGDDAPRAVF--------PSIVGRPRHTGVMVGMGQKDSYVGDEAQSKR---G------------ 64 (376)
T ss_pred eEEEECCCCeEEEeeCCCCCCCeec--------cccceeecCcccccCcccCCeEECchhhccc---c------------
Confidence 5889999999999998777776443 6666543221 233444432100 0
Q ss_pred CCCCcHHHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHH
Q psy2902 144 RKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQAT 223 (945)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l 223 (945)
.+ ....++.+..+...+.+..++.++..... .....-..+++|-|..+...+|+.|
T Consensus 65 ---------------~~--------~l~~Pi~~G~i~dwd~~e~l~~~~f~~~l-~v~p~~~pvllte~~~~~~~~re~l 120 (376)
T PTZ00281 65 ---------------IL--------TLKYPIEHGIVTNWDDMEKIWHHTFYNEL-RVAPEEHPVLLTEAPLNPKANREKM 120 (376)
T ss_pred ---------------Cc--------EEeccCcCCEEcCHHHHHHHHHHHHHhhc-cCCCccCeEEEecCCCCcHHHHHHH
Confidence 00 01122334455566666677777654211 1122234678899999999999988
Q ss_pred HHH-HHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHH
Q psy2902 224 KDA-GRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDF 302 (945)
Q Consensus 224 ~~A-a~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~i 302 (945)
.+. .+..+++.+.+..+|.+++++++. .+-+|||+|.+.+.++-+.-.. .+........+||.++
T Consensus 121 ~e~lFE~~~vp~~~~~~~~~ls~ya~g~-------~tglVVDiG~~~t~v~PV~dG~-------~~~~~~~~~~~GG~~l 186 (376)
T PTZ00281 121 TQIMFETFNTPAMYVAIQAVLSLYASGR-------TTGIVMDSGDGVSHTVPIYEGY-------ALPHAILRLDLAGRDL 186 (376)
T ss_pred HHHHhcccCCceeEeeccHHHHHHhcCC-------ceEEEEECCCceEEEEEEEecc-------cchhheeeccCcHHHH
Confidence 774 577889999999999999998754 3569999999999988664211 1111222346899999
Q ss_pred HHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcc------------eeeeeceeeccCCCCeEEEEEE
Q psy2902 303 DQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQ------------TEINEPYIAMSNGAPVHLNLKI 370 (945)
Q Consensus 303 D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~------------~~i~i~~~~~~~~~~~~~~~~i 370 (945)
++.|.+.|..+ +..+... . =...++.+|+.+..-.. ......+...+ +-.+.+
T Consensus 187 t~~L~~lL~~~-----~~~~~~~-~----~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y~LPd-----g~~i~i 251 (376)
T PTZ00281 187 TDYMMKILTER-----GYSFTTT-A----EREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELPD-----GQVITI 251 (376)
T ss_pred HHHHHHHHHhc-----CCCCCcH-H----HHHHHHHHHHhcEEecCCchHHHHhhhcCcccceeEECCC-----CCEEEe
Confidence 99998877543 1111110 0 02345666666543210 00001111111 123555
Q ss_pred cHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCCCC--CCCCcEEEecCccccHHHHHHHHHHhC----C--C--CC
Q psy2902 371 TRAKL---ELLVDELI-----TRTIEPCRIAIKDAGIKV--SDINDIILVGGMTRMPKVQEKVKEFFG----K--D--PR 432 (945)
Q Consensus 371 tr~~~---e~~~~~~i-----~~i~~~i~~~l~~~~~~~--~~i~~ViLvGG~s~~p~v~~~l~~~fg----~--~--~~ 432 (945)
..+.| |-++.|.+ ..+.++|.+++..+.... .-.+.|+|+||+|.+|.+.++|+..+. . + +.
T Consensus 252 ~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~ 331 (376)
T PTZ00281 252 GNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKII 331 (376)
T ss_pred eHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCcceEEe
Confidence 55444 23344322 134566666666653321 124679999999999999999987772 1 1 22
Q ss_pred CCCCCCchhhhhHHHhhhh
Q psy2902 433 RDINPDEAVAVGAAIQGSV 451 (945)
Q Consensus 433 ~~~~p~~avA~GAa~~a~~ 451 (945)
.+.++..++=+||+++|..
T Consensus 332 ~~~~r~~~aW~Ggsilasl 350 (376)
T PTZ00281 332 APPERKYSVWIGGSILASL 350 (376)
T ss_pred cCCCCceeEEECcccccCc
Confidence 3446677888899998863
No 109
>PRK10331 L-fuculokinase; Provisional
Probab=99.29 E-value=2.3e-11 Score=141.62 Aligned_cols=216 Identities=15% Similarity=0.095 Sum_probs=129.3
Q ss_pred HHHHHHHHHcCC----ccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCC----ceEEEEEe-
Q psy2902 221 QATKDAGRIAGL----EVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGE----KQFEVLST- 291 (945)
Q Consensus 221 ~~l~~Aa~~AGl----~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~----~~~~vl~~- 291 (945)
....++|...|| +++.-..+..||+++.+.. .+. +++-+|.+.+-..+..-...... +.......
T Consensus 217 ~v~~~~a~~~GL~~g~pV~~g~~D~~aa~~g~g~~----~g~--~~~~~GT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (470)
T PRK10331 217 TLQPSAAALLGLPVGIPVISAGHDTQFALFGSGAG----QNQ--PVLSSGTWEILMVRSAQVDTSLLSQYAGSTCELDSQ 290 (470)
T ss_pred ccCHHHHHHhCCCCCCeEEEccccHHHHHhCCCCC----CCC--EEEecchhhhheeecCCCcccccccccccceecccc
Confidence 445677777776 4566788889999988752 233 33345554432221110000000 11111111
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeecc-CCCCeEEEEEE
Q psy2902 292 NGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMS-NGAPVHLNLKI 370 (945)
Q Consensus 292 ~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~-~~~~~~~~~~i 370 (945)
.+....++..+....++|+.+.|.. ....+..|.+.++++ .......+.+|.+... .+...+++...
T Consensus 291 ~~~~~~~~~~~~g~~~~W~~~~~~~--------~~~~y~~l~~~a~~~----~~g~~gl~~~p~~~g~~rg~~~Gl~~~~ 358 (470)
T PRK10331 291 SGLYNPGMQWLASGVLEWVRKLFWT--------AETPYQTMIEEARAI----PPGADGVKMQCDLLACQNAGWQGVTLNT 358 (470)
T ss_pred CceeeechhhHHHHHHHHHHHHhcc--------cCchHHHHHHHHhcC----CCCCCceEecccccccCceeEECCCCCc
Confidence 1111123434445577898887742 012234444544433 2223344556655422 23345666778
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhh
Q psy2902 371 TRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGS 450 (945)
Q Consensus 371 tr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~ 450 (945)
+|.+|.+.+-+.+......+.+.|++.+. ..++.|.++||+++++.|.|++++.||.++.... ..+++|+|||+.|+
T Consensus 359 ~~~~l~rAvlEgia~~~~~~~~~l~~~~~--~~~~~i~~~GGga~s~~w~Qi~Advlg~pV~~~~-~~e~~a~GaA~la~ 435 (470)
T PRK10331 359 TRGHFYRAALEGLTAQLKRNLQVLEKIGH--FKASELLLVGGGSRNALWNQIKANMLDIPIKVLD-DAETTVAGAAMFGW 435 (470)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCceEEEEcccccCHHHHHHHHHhcCCeeEecC-cccchHHHHHHHHH
Confidence 99999888887777666666677766432 2368999999999999999999999999997555 45688999999999
Q ss_pred hccCCCC
Q psy2902 451 VLSGDRK 457 (945)
Q Consensus 451 ~~~~~~~ 457 (945)
...|..+
T Consensus 436 ~~~G~~~ 442 (470)
T PRK10331 436 YGVGEFS 442 (470)
T ss_pred HhcCCCC
Confidence 7766433
No 110
>PTZ00004 actin-2; Provisional
Probab=99.26 E-value=3.1e-10 Score=128.03 Aligned_cols=301 Identities=15% Similarity=0.119 Sum_probs=179.7
Q ss_pred eEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCC---------cEEecHHHHHhhhhCCCchhHHHHHhhC
Q psy2902 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENG---------EILVGAPAKRQAVTNPKNTIYAAKRLIG 143 (945)
Q Consensus 73 viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~---------~~~~G~~A~~~~~~~~~~~i~~~k~llg 143 (945)
.|-||+||.++++++..++.|..+ +||++....+. ..++|.++... ...
T Consensus 8 ~vViD~Gs~~~k~G~ag~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~--------- 65 (378)
T PTZ00004 8 AAVVDNGSGMVKAGFAGDDAPRCV--------FPSIVGRPKNPGIMVGMEEKDCYVGDEAQDK-----RGI--------- 65 (378)
T ss_pred eEEEECCCCeEEEeeCCCCCCCEE--------ccceeEEecccccccCcCCCceEECchhhcc-----ccc---------
Confidence 589999999999999877766544 37776654321 23445443210 000
Q ss_pred CCCCcHHHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhC--CCCCcEEEEcCCCCCHHHHH
Q psy2902 144 RKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLG--GEITEAVITVPAYFNDAQRQ 221 (945)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~--~~~~~~VitVPa~~~~~qr~ 221 (945)
-....++.+..+...+....++.++... .+. ..-..+++|.|..++..+|+
T Consensus 66 ------------------------~~l~~Pi~~G~i~d~d~~e~i~~~~~~~---~l~v~~~~~pvllte~~~~~~~~r~ 118 (378)
T PTZ00004 66 ------------------------LTLKYPIEHGIVTNWDDMEKIWHHTFYN---ELRVAPEEHPVLLTEAPLNPKANRE 118 (378)
T ss_pred ------------------------ceEcccCcCCEEcCHHHHHHHHHHHHHh---hcccCCccCcceeecCCCCcHHHHH
Confidence 0011223344455667777777775432 222 22346788999999999998
Q ss_pred HHHHH-HHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchH
Q psy2902 222 ATKDA-GRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGE 300 (945)
Q Consensus 222 ~l~~A-a~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~ 300 (945)
.+.+. .+..+++.+.++.+|.+|+++++. .+-+|+|+|.+.++++-+.- +..- .....-.++||.
T Consensus 119 ~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~-------~tglVVDiG~~~t~v~pV~d------G~~l-~~~~~~~~~GG~ 184 (378)
T PTZ00004 119 KMTQIMFETHNVPAMYVAIQAVLSLYASGR-------TTGIVLDSGDGVSHTVPIYE------GYSL-PHAIHRLDVAGR 184 (378)
T ss_pred HHHHHHHhhcCCceEEeeccHHHHHHhcCC-------ceEEEEECCCCcEEEEEEEC------CEEe-ecceeeecccHH
Confidence 77555 567899999999999999998754 35699999999999987742 2111 112223468999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcc-------------eeeeeceeeccCCCCeEEE
Q psy2902 301 DFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQ-------------TEINEPYIAMSNGAPVHLN 367 (945)
Q Consensus 301 ~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~-------------~~i~i~~~~~~~~~~~~~~ 367 (945)
++|+.|.+.+..+- ..+... . -...++.+|+.+..... ......+...+ +-.
T Consensus 185 ~lt~~L~~lL~~~~-----~~~~~~--~---~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~y~lPd-----g~~ 249 (378)
T PTZ00004 185 DLTEYMMKILHERG-----TTFTTT--A---EKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEESYELPD-----GTI 249 (378)
T ss_pred HHHHHHHHHHHhcC-----CCCCcH--H---HHHHHHHHhhcceeecCCHHHHHhhhhcCccccceEEECCC-----CCE
Confidence 99999998875431 111111 0 12234555555432110 00011111111 123
Q ss_pred EEEcHHHH---HHHHHHH------HHHHHHHHHHHHHHcCCCC--CCCCcEEEecCccccHHHHHHHHHHhCC-------
Q psy2902 368 LKITRAKL---ELLVDEL------ITRTIEPCRIAIKDAGIKV--SDINDIILVGGMTRMPKVQEKVKEFFGK------- 429 (945)
Q Consensus 368 ~~itr~~~---e~~~~~~------i~~i~~~i~~~l~~~~~~~--~~i~~ViLvGG~s~~p~v~~~l~~~fg~------- 429 (945)
+.+..+.| |-++.|. ...+.++|.+++..+..+. .-...|+|+||+|.+|.+.++|...+..
T Consensus 250 i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~ 329 (378)
T PTZ00004 250 ITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMK 329 (378)
T ss_pred EEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCcc
Confidence 45555544 2344442 2244566777776654321 1246799999999999999999887731
Q ss_pred -CCCCCCCCCchhhhhHHHhhhh
Q psy2902 430 -DPRRDINPDEAVAVGAAIQGSV 451 (945)
Q Consensus 430 -~~~~~~~p~~avA~GAa~~a~~ 451 (945)
.+....++..++=+||+++|..
T Consensus 330 ~~v~~~~~~~~~aW~Ggsilas~ 352 (378)
T PTZ00004 330 IKVVAPPERKYSVWIGGSILSSL 352 (378)
T ss_pred EEEecCCCCceeEEECcccccCc
Confidence 1223446677888899888863
No 111
>PTZ00466 actin-like protein; Provisional
Probab=99.23 E-value=3.9e-10 Score=126.69 Aligned_cols=302 Identities=17% Similarity=0.136 Sum_probs=181.2
Q ss_pred eEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeC---------CcEEecHHHHHhhhhCCCchhHHHHHhhC
Q psy2902 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQEN---------GEILVGAPAKRQAVTNPKNTIYAAKRLIG 143 (945)
Q Consensus 73 viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~---------~~~~~G~~A~~~~~~~~~~~i~~~k~llg 143 (945)
.|-||+||.++++++..+..|.++ +||++..... +..++|.+|.... .
T Consensus 14 ~iViD~GS~~~K~G~ag~~~P~~~--------~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~~--~------------- 70 (380)
T PTZ00466 14 PIIIDNGTGYIKAGFAGEDVPNLV--------FPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYR--G------------- 70 (380)
T ss_pred eEEEECCCCcEEEeeCCCCCCCEe--------ccceeeeecCccccccCCCCCeEECchhhhhC--c-------------
Confidence 488999999999999977777654 3666655322 1234454442110 0
Q ss_pred CCCCcHHHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHH
Q psy2902 144 RKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQAT 223 (945)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l 223 (945)
.-....++....+...+.+..++.++.+... ....-..+++|-|..++..+|+.+
T Consensus 71 -----------------------~~~l~~Pi~~G~v~dwd~~e~iw~~~f~~l~--v~~~~~pvllte~~~~~~~~re~~ 125 (380)
T PTZ00466 71 -----------------------LLKVTYPINHGIIENWNDMENIWIHVYNSMK--INSEEHPVLLTEAPLNPQKNKEKI 125 (380)
T ss_pred -----------------------CceeCccccCCeECCHHHHHHHHHHHHhhcc--cCCccCeEEEecCccccHHHHHHH
Confidence 0001223344456677777777887764321 122234678899999999999988
Q ss_pred HHH-HHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHH
Q psy2902 224 KDA-GRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDF 302 (945)
Q Consensus 224 ~~A-a~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~i 302 (945)
.+. .+..+++.+.+..+|.+|+++++. .+-+|||+|.+.+.++-+.- +.. +........+||.++
T Consensus 126 ~e~lFE~~~~p~~~~~~~~~lsl~a~g~-------~tglVVD~G~~~t~v~PV~~------G~~-~~~~~~~~~~GG~~l 191 (380)
T PTZ00466 126 AEVFFETFNVPALFISIQAILSLYSCGK-------TNGTVLDCGDGVCHCVSIYE------GYS-ITNTITRTDVAGRDI 191 (380)
T ss_pred HHHHhccCCCCeEEEecchHHHHHhcCC-------ceEEEEeCCCCceEEEEEEC------CEE-eecceeEecCchhHH
Confidence 665 466788889999999999998754 35799999999999986642 211 111222246899999
Q ss_pred HHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcc-----------eeeeeceeeccCCCCeEEEEEEc
Q psy2902 303 DQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQ-----------TEINEPYIAMSNGAPVHLNLKIT 371 (945)
Q Consensus 303 D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~-----------~~i~i~~~~~~~~~~~~~~~~it 371 (945)
++.|.+.+.+. +..... . .-.+.++.+|+.+..-.. .....++...+ +..+.+.
T Consensus 192 t~~L~~lL~~~-----~~~~~~-~----~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~~~y~LPd-----g~~i~l~ 256 (380)
T PTZ00466 192 TTYLGYLLRKN-----GHLFNT-S----AEMEVVKNMKENCCYVSFNMNKEKNSSEKALTTLPYILPD-----GSQILIG 256 (380)
T ss_pred HHHHHHHHHhc-----CCCCCc-H----HHHHHHHHHHHhCeEecCChHHHHhhccccccceeEECCC-----CcEEEEc
Confidence 99998877542 111110 0 113345556665432110 00001111111 2345666
Q ss_pred HHHH---HHHHHHHH-----HHHHHHHHHHHHHcCCCC--CCCCcEEEecCccccHHHHHHHHHHhCC----C----CCC
Q psy2902 372 RAKL---ELLVDELI-----TRTIEPCRIAIKDAGIKV--SDINDIILVGGMTRMPKVQEKVKEFFGK----D----PRR 433 (945)
Q Consensus 372 r~~~---e~~~~~~i-----~~i~~~i~~~l~~~~~~~--~~i~~ViLvGG~s~~p~v~~~l~~~fg~----~----~~~ 433 (945)
.+.| |-++.|.+ ..+.++|.+.+..+..+. .-...|+|+||+|.+|.+.++|...+.. . +..
T Consensus 257 ~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~ 336 (380)
T PTZ00466 257 SERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISA 336 (380)
T ss_pred hHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEec
Confidence 6555 23333321 134556666666654321 1247899999999999999999887721 1 222
Q ss_pred CCCCCchhhhhHHHhhhh
Q psy2902 434 DINPDEAVAVGAAIQGSV 451 (945)
Q Consensus 434 ~~~p~~avA~GAa~~a~~ 451 (945)
..++..++=+||+++|..
T Consensus 337 ~~~r~~~aW~GgSilasl 354 (380)
T PTZ00466 337 PPERKFSTFIGGSILASL 354 (380)
T ss_pred CCCCceeEEECchhhcCc
Confidence 345666777899988863
No 112
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.19 E-value=2.6e-09 Score=119.80 Aligned_cols=180 Identities=15% Similarity=0.196 Sum_probs=121.1
Q ss_pred CHHHHHHHHHHHHHcCCccceecchhHHHHHHhc-----cCCCCCCCc-eEEEEEeCCcceEEEEEEEEeecCCceEEEE
Q psy2902 216 NDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG-----LDKSGKSDR-NIVVYDLGGGTFDVSIIEIADVDGEKQFEVL 289 (945)
Q Consensus 216 ~~~qr~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~-----~~~~~~~~~-~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl 289 (945)
.....+.+.++++.||++...+..+|.|.+-.+. .... .... .++++|+|+++++++++.- +.+..
T Consensus 141 ~~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~-~~~~~~~~lvdiG~~~t~l~i~~~------g~~~~- 212 (348)
T TIGR01175 141 RKEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASR-TYRLTDAALVDIGATSSTLNLLHP------GRMLF- 212 (348)
T ss_pred cHHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccc-cccCceEEEEEECCCcEEEEEEEC------CeEEE-
Confidence 3566788899999999999999999999876663 1111 2233 4999999999999999963 22221
Q ss_pred EecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEE
Q psy2902 290 STNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLK 369 (945)
Q Consensus 290 ~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~ 369 (945)
.....+||.++++.+.+.+ +.+ .++||+.|....... .
T Consensus 213 --~r~i~~G~~~i~~~i~~~~--------~~~-----------~~~Ae~~k~~~~~~~-----------------~---- 250 (348)
T TIGR01175 213 --TREVPFGTRQLTSELSRAY--------GLN-----------PEEAGEAKQQGGLPL-----------------L---- 250 (348)
T ss_pred --EEEeechHHHHHHHHHHHc--------CCC-----------HHHHHHHHhcCCCCC-----------------c----
Confidence 1234569999998886432 222 456788876432110 0
Q ss_pred EcHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCC-------------
Q psy2902 370 ITRAKLELLVDELITRTIEPCRIAIKDA--GIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRD------------- 434 (945)
Q Consensus 370 itr~~~e~~~~~~i~~i~~~i~~~l~~~--~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~------------- 434 (945)
.-.+++++.++++...|.+.|+-. ......++.|+|+||+++++.+.+.+++.|+.++...
T Consensus 251 ----~~~~~~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~P~~~~~~~~~~~ 326 (348)
T TIGR01175 251 ----YDPEVLRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLPTEVANPFALMALDAKVD 326 (348)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCCCeEecChHHhcccCccCC
Confidence 012345666666666677776532 2223358999999999999999999999998665321
Q ss_pred ------CCCCchhhhhHHHhh
Q psy2902 435 ------INPDEAVAVGAAIQG 449 (945)
Q Consensus 435 ------~~p~~avA~GAa~~a 449 (945)
.+|..++|.|+|+++
T Consensus 327 ~~~~~~~~~~~~~a~Glalr~ 347 (348)
T TIGR01175 327 AGRLAVDAPALMTALGLALRG 347 (348)
T ss_pred HHHHHhhhHHHHHHhhHhhcC
Confidence 234557777777664
No 113
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=99.18 E-value=1.5e-10 Score=136.19 Aligned_cols=223 Identities=15% Similarity=0.156 Sum_probs=120.3
Q ss_pred HHHHHHHHcCC----ccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCC-C
Q psy2902 222 ATKDAGRIAGL----EVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDT-F 296 (945)
Q Consensus 222 ~l~~Aa~~AGl----~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~-~ 296 (945)
...++|+..|| +++....+..|++++.+... ++ .+++-+|.+.+-..+..-.........-......+. .
T Consensus 215 l~~~~a~~~GL~~g~pV~~g~~D~~aa~~g~g~~~---~g--~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (505)
T TIGR01314 215 LPHEYAKKMGIQSSTPFVIGASDGVLSNLGVNAIK---KG--EAAVTIGTSGAIRTVIDKPKTDEKGRIFCYALTKEHWV 289 (505)
T ss_pred cCHHHHHHhCCCCCCeEEEeccHHHHHHhcCCCCC---CC--cEEEEechhheeeeccCcCccCCCCceEEEEecCCcEE
Confidence 34567777776 46667888888888887643 22 233345555442222211011111111000011010 1
Q ss_pred Cch-HHHHHHHHHHHHHHHHHHhCCC-CccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccC---------CCCeE
Q psy2902 297 LGG-EDFDQRIIDYILDEFNKINGID-LRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSN---------GAPVH 365 (945)
Q Consensus 297 lGG-~~iD~~l~~~l~~~~~~~~~~~-~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~---------~~~~~ 365 (945)
++| ..--..+++|+.+.+....... .......+..|.+.++++ .......+.+|++.... +...+
T Consensus 290 ~~~~~~~~g~~~~W~~~~~~~~~~~~~~~~~~~~y~~l~~~a~~~----~~g~~gl~~~P~l~G~r~P~~~~~~rg~f~G 365 (505)
T TIGR01314 290 IGGPVNNGGDVLRWARDEIFDSEIETATRLGIDPYDVLTEIAARV----SPGADGLLFHPYLAGERAPLWNANARGSFFG 365 (505)
T ss_pred EEeeecchHhHHHHHHHHhhhhhhhhhhhcCCCHHHHHHHHHhhC----CCCCCceEEecccccCCCCCCCCCccEEEEC
Confidence 111 1112234567776653211000 000011234444444333 22223456666654211 11234
Q ss_pred EEEEEcHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhh
Q psy2902 366 LNLKITRAKLELLVDELITRTIEPCRIAIKD-AGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVG 444 (945)
Q Consensus 366 ~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~-~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~G 444 (945)
++...++++|-+.+-+.+..-...+.+.+.+ .+. .++.|.++||+++++.|.+++++.||.++.+..+ .++.|+|
T Consensus 366 l~~~~~~~~l~rAvlEgia~~~~~~~~~~~~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~-~e~~a~G 441 (505)
T TIGR01314 366 LTYSHKKEHMIRAALEGVIYNLYTVALALVEVMGD---PLNMIQATGGFASSEVWRQMMSDIFEQEIVVPES-YESSCLG 441 (505)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEecCcccCHHHHHHHHHHcCCeeEecCC-CCcchHH
Confidence 4566688888877766665554444444443 443 4789999999999999999999999999976554 4688999
Q ss_pred HHHhhhhccCCCC
Q psy2902 445 AAIQGSVLSGDRK 457 (945)
Q Consensus 445 Aa~~a~~~~~~~~ 457 (945)
||++|+...|..+
T Consensus 442 aA~la~~~~G~~~ 454 (505)
T TIGR01314 442 ACILGLKALGLIE 454 (505)
T ss_pred HHHHHHHhcCccC
Confidence 9999998776433
No 114
>PRK00047 glpK glycerol kinase; Provisional
Probab=99.14 E-value=7.6e-10 Score=129.92 Aligned_cols=205 Identities=16% Similarity=0.123 Sum_probs=122.7
Q ss_pred cCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEE-eecCCceEEEEEe-cCC----CCCchHHHH
Q psy2902 230 AGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIA-DVDGEKQFEVLST-NGD----TFLGGEDFD 303 (945)
Q Consensus 230 AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~-~~~~~~~~~vl~~-~~~----~~lGG~~iD 303 (945)
+|++++....+..|++++.+.... +..+++ +|.+++-..+..-. .......+..... ..+ ...|+....
T Consensus 236 ~g~pV~~g~~D~~aa~~G~G~~~~---g~~~~~--~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 310 (498)
T PRK00047 236 GEVPIAGIAGDQQAALFGQLCFEP---GMAKNT--YGTGCFMLMNTGEKAVKSENGLLTTIAWGIDGKVVYALEGSIFVA 310 (498)
T ss_pred CCceEEEEccHHHHHHHhCcCCCC---CceEEe--eccceEEEEecCCccccCCCCceeEEEEEcCCCcEEEEEeeHhhH
Confidence 577888888899999998876542 333332 45543322222000 1111111221111 111 123555556
Q ss_pred HHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeecc---------CCCCeEEEEEEcHHH
Q psy2902 304 QRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMS---------NGAPVHLNLKITRAK 374 (945)
Q Consensus 304 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~---------~~~~~~~~~~itr~~ 374 (945)
..+++|+.+.+.. . .. ...+.+.++.. . .....+.+|++... .+...+++...+|.+
T Consensus 311 g~~l~W~~~~~~~----~--~~---~~~~~~~a~~~----~-~~~gl~~lP~l~G~r~P~~d~~arg~~~Gl~~~~~~~~ 376 (498)
T PRK00047 311 GSAIQWLRDGLKI----I--SD---ASDSEALARKV----E-DNDGVYVVPAFTGLGAPYWDSDARGAIFGLTRGTTKEH 376 (498)
T ss_pred HHHHHHHHHHhcC----C--CC---HHHHHHHHhcC----C-CCCCEEEeCccccCCCCCCCCCCcEEEECCCCCCCHHH
Confidence 6678999888741 0 11 11222222221 2 22345677876511 112334566778988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-cCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhcc
Q psy2902 375 LELLVDELITRTIEPCRIAIKD-AGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLS 453 (945)
Q Consensus 375 ~e~~~~~~i~~i~~~i~~~l~~-~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~ 453 (945)
+-+.+-+.+..-...+.+.|++ .+. .++.|.++||+++++.|.|++++.||.++.... ..++.|+|||+.|+...
T Consensus 377 l~rAvlEgia~~~r~~~e~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~-~~e~~a~GaA~~A~~~~ 452 (498)
T PRK00047 377 IIRATLESIAYQTRDVLDAMQADSGI---RLKELRVDGGAVANNFLMQFQADILGVPVERPV-VAETTALGAAYLAGLAV 452 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC---CCceEEEecCcccCHHHHHHHHHhhCCeeEecC-cccchHHHHHHHHhhhc
Confidence 8887777776666666677764 344 368999999999999999999999999997544 45788999999999877
Q ss_pred CCCC
Q psy2902 454 GDRK 457 (945)
Q Consensus 454 ~~~~ 457 (945)
|..+
T Consensus 453 G~~~ 456 (498)
T PRK00047 453 GFWK 456 (498)
T ss_pred CcCC
Confidence 6433
No 115
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=99.13 E-value=1.5e-09 Score=127.61 Aligned_cols=207 Identities=19% Similarity=0.222 Sum_probs=122.2
Q ss_pred HcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEE-eecCCceEEEEEecC--C-----CCCchH
Q psy2902 229 IAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIA-DVDGEKQFEVLSTNG--D-----TFLGGE 300 (945)
Q Consensus 229 ~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~-~~~~~~~~~vl~~~~--~-----~~lGG~ 300 (945)
..|++++....+..||+++.+... .+. ++.-+|.+++-+..+.-. .......+....... + ...|+.
T Consensus 236 ~~g~pV~~g~~D~~aa~~G~g~~~---~g~--~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (504)
T PTZ00294 236 LEGVPITGCIGDQQAALIGHGCFE---KGD--AKNTYGTGCFLLMNTGTEIVFSKHGLLTTVCYQLGPNGPTVYALEGSI 310 (504)
T ss_pred CCCCcEEEEecHHHHHHHhCcCCC---CCc--eEEeeccceEEEEeeCCccccCCCCceEEEEEEecCCCCcEEEEechh
Confidence 457788888889999999987643 122 223345543321211100 111122222222111 1 122444
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeecc---------CCCCeEEEEEEc
Q psy2902 301 DFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMS---------NGAPVHLNLKIT 371 (945)
Q Consensus 301 ~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~---------~~~~~~~~~~it 371 (945)
..-...++|+++.+.. ..+ ...+.+.++++ . .....+.+|++... .+...+++...+
T Consensus 311 ~~~g~~~~W~~~~~~~------~~~---~~~~~~~a~~~----~-g~~gl~~~P~l~G~r~P~~~~~arg~~~Gl~~~~~ 376 (504)
T PTZ00294 311 AVAGAGVEWLRDNMGL------ISH---PSEIEKLARSV----K-DTGGVVFVPAFSGLFAPYWRPDARGTIVGMTLKTT 376 (504)
T ss_pred hhhHHHHHHHHHHhCC------CCC---HHHHHHHHHhC----C-CCCCEEEeCcccCCCCCCCCCCCCEEEEccCCCCC
Confidence 4455667898887631 111 12233333332 1 22344666766411 122235556678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhh
Q psy2902 372 RAKLELLVDELITRTIEPCRIAIKD-AGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGS 450 (945)
Q Consensus 372 r~~~e~~~~~~i~~i~~~i~~~l~~-~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~ 450 (945)
+.+|-+.+-+.+......+.+.+++ .+. .++.|+++||+++++.|.+++++.||.++.... ..++.|+|||++|+
T Consensus 377 ~~~i~rAvlEgia~~~r~~~~~l~~~~g~---~~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~~~-~~e~~alGaAl~aa 452 (504)
T PTZ00294 377 RAHIVRAALEAIALQTNDVIESMEKDAGI---ELNSLRVDGGLTKNKLLMQFQADILGKDIVVPE-MAETTALGAALLAG 452 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCC---CcceEEEecccccCHHHHHHHHHHhCCceEecC-cccchHHHHHHHHH
Confidence 8988887777666666555566665 344 268999999999999999999999999997555 55688999999999
Q ss_pred hccCCCCc
Q psy2902 451 VLSGDRKD 458 (945)
Q Consensus 451 ~~~~~~~~ 458 (945)
...|..++
T Consensus 453 ~a~G~~~~ 460 (504)
T PTZ00294 453 LAVGVWKS 460 (504)
T ss_pred hhcCccCC
Confidence 87774443
No 116
>PLN02295 glycerol kinase
Probab=99.13 E-value=7.8e-10 Score=130.10 Aligned_cols=204 Identities=16% Similarity=0.154 Sum_probs=122.1
Q ss_pred cCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEE--eecCCceEEEEEec------C-CCCCchH
Q psy2902 230 AGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIA--DVDGEKQFEVLSTN------G-DTFLGGE 300 (945)
Q Consensus 230 AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~--~~~~~~~~~vl~~~------~-~~~lGG~ 300 (945)
.|++++....+..|++++.+. .. +.. ++-+|.+.+ +.+..-. .......+..+... + -...|+.
T Consensus 239 ~g~pV~~g~~D~~aa~~G~G~-~~---g~~--~~~~GTs~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 311 (512)
T PLN02295 239 AGVPIAGCLGDQHAAMLGQRC-RP---GEA--KSTYGTGCF-ILLNTGEEVVPSKHGLLTTVAYKLGPDAPTNYALEGSV 311 (512)
T ss_pred CCCcEEEEechHHHHHhhCcC-CC---CCe--EEEEcccce-eeeecCCccccCCCCceEEEEEEecCCCCceEEEechh
Confidence 489988889999999999877 32 332 333554432 1111100 00111222222211 0 1123455
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeecc---------CCCCeEEEEEEc
Q psy2902 301 DFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMS---------NGAPVHLNLKIT 371 (945)
Q Consensus 301 ~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~---------~~~~~~~~~~it 371 (945)
..-...++|+++.+.. . .+ ...+.+.++++ . .....+.+|++... .+...+++...+
T Consensus 312 ~~~G~~~~W~~~~~~~----~--~~---~~~~~~~a~~~----~-g~~gl~f~P~l~G~r~P~~~~~arg~~~Gl~~~~~ 377 (512)
T PLN02295 312 AIAGAAVQWLRDNLGI----I--KS---ASEIEALAATV----D-DTGGVYFVPAFSGLFAPRWRDDARGVCVGITRFTN 377 (512)
T ss_pred hhhHHHHHHHHHHcCC----C--CC---HHHHHHHHHhC----C-CCCceEEeCcccCCCCCcCCCCCCEEEECCCCCCC
Confidence 5555667899887741 1 11 11222222222 1 22234677776411 112234556778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc-CC--CCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHh
Q psy2902 372 RAKLELLVDELITRTIEPCRIAIKDA-GI--KVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQ 448 (945)
Q Consensus 372 r~~~e~~~~~~i~~i~~~i~~~l~~~-~~--~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~ 448 (945)
+.+|-+.+-+.+..-...+.+.|++. +. ....++.|.++||+++++.|.|++++.||.++.... ..++.|+|||+.
T Consensus 378 ~~~l~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~~~-~~e~~alGaA~~ 456 (512)
T PLN02295 378 KAHIARAVLESMCFQVKDVLDAMRKDAGEEKSHKGLFLLRVDGGATANNLLMQIQADLLGSPVVRPA-DIETTALGAAYA 456 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceEEEeccchhCHHHHHHHHHhcCCceEecC-ccccHHHHHHHH
Confidence 99998888777777666666777654 22 122478899999999999999999999999997544 457889999999
Q ss_pred hhhccCC
Q psy2902 449 GSVLSGD 455 (945)
Q Consensus 449 a~~~~~~ 455 (945)
|+...|.
T Consensus 457 A~~~~G~ 463 (512)
T PLN02295 457 AGLAVGL 463 (512)
T ss_pred HHhhcCc
Confidence 9877764
No 117
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.11 E-value=3.3e-09 Score=116.83 Aligned_cols=206 Identities=21% Similarity=0.200 Sum_probs=126.3
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHHHHc---------CCccceecchhHHHHHHhccCCC--CCCCceEEEEEeCCcceE
Q psy2902 203 EITEAVITVPAYFNDAQRQATKDAGRIA---------GLEVKRIINEPTAAALAFGLDKS--GKSDRNIVVYDLGGGTFD 271 (945)
Q Consensus 203 ~~~~~VitVPa~~~~~qr~~l~~Aa~~A---------Gl~~v~li~Ep~AAAl~~~~~~~--~~~~~~vlVvD~GggT~d 271 (945)
.+..+|+..|..+-..+++.+++..... -+..+.+++||.+|.+.+..+.. ......++|+|+|++|+|
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD 180 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFD 180 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeee
Confidence 3567999999999888999998876532 23557789999999887765321 125677899999999999
Q ss_pred EEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceee
Q psy2902 272 VSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEI 351 (945)
Q Consensus 272 vsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i 351 (945)
+.++. +..+ +....+....|..++-+.+.+.+.+++. .+...+.. ..+++ |.......+
T Consensus 181 ~~~~~------~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~g----~~~~~~~~-------~i~~~---l~~g~~~~~ 239 (320)
T TIGR03739 181 WLVAR------GMRL-VQKRSGSVNGGMSDIYRLLAAEISKDIG----TPAYRDID-------RIDLA---LRTGKQPRI 239 (320)
T ss_pred eehcc------CCEE-cccccCCchhHHHHHHHHHHHHHHhhcC----CCCccCHH-------HHHHH---HHhCCceee
Confidence 98764 2333 3334444566877777777777666553 22101111 11211 111110000
Q ss_pred eeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCC-
Q psy2902 352 NEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKD- 430 (945)
Q Consensus 352 ~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~- 430 (945)
. .-.+.++ +..+.....++.+...+...+. ...+++.|+|+||++. .+++.|++.|+..
T Consensus 240 --------~----gk~~di~--~~~~~~~~~~~~~v~~i~~~~~----~~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~ 299 (320)
T TIGR03739 240 --------Y----QKPVDIK--RCLELAETVAQQAVSTMMTWIG----APESIQNIVLVGGGAF--LFKKAVKAAFPKHR 299 (320)
T ss_pred --------c----ceecCch--HHHHHHHHHHHHHHHHHHHhcc----cCCcccEEEEeCCcHH--HHHHHHHHHCCCCe
Confidence 0 0012222 2222333334444333333331 1245889999999996 6689999999763
Q ss_pred CCCCCCCCchhhhhHHHhh
Q psy2902 431 PRRDINPDEAVAVGAAIQG 449 (945)
Q Consensus 431 ~~~~~~p~~avA~GAa~~a 449 (945)
+....||..|.|+|-..+|
T Consensus 300 i~~~~dp~~ANarG~~~~g 318 (320)
T TIGR03739 300 IVEVDEPMFANVRGFQIAG 318 (320)
T ss_pred eEecCCcHHHHHHHHHHhh
Confidence 3457889999999988766
No 118
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=99.11 E-value=5.9e-10 Score=130.42 Aligned_cols=217 Identities=19% Similarity=0.183 Sum_probs=125.6
Q ss_pred CHHHHHHHHHHHHHcCCc----cceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEe
Q psy2902 216 NDAQRQATKDAGRIAGLE----VKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLST 291 (945)
Q Consensus 216 ~~~qr~~l~~Aa~~AGl~----~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~ 291 (945)
++.......++|+..||+ ++....+..|++++.+.... +. ++.=+|...+-.++... ...+........
T Consensus 216 g~~~G~l~~e~A~~~Gl~~~~pV~~G~~D~~~a~lg~g~~~~---g~--~~~~~gts~~~~~~~~~--~~~~~~~~~~~~ 288 (502)
T COG1070 216 GEVLGTLTPEAAEELGLPAGTPVVVGGGDNAAAALGAGAVDP---GD--VSSSTGTSGVVRAATDK--PLDDPRGSIYTF 288 (502)
T ss_pred cceeccccHHHHHHhCCCCCCeEEECCchHHHHhccCCCcCC---Cc--EEEEeccccEEeeeccc--cccCCccceeee
Confidence 344455667889999983 45567899999999887763 22 44444444333333321 011111111111
Q ss_pred ----cCC-CCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccC------
Q psy2902 292 ----NGD-TFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSN------ 360 (945)
Q Consensus 292 ----~~~-~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~------ 360 (945)
.+. ...|+...-....+|+.+.+.... ....+...+.. ..........+..|++....
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~l~w~~~~~~~~~---------~~~~~~~~~~~--~~~~~~~~~l~f~p~l~~er~p~~~~ 357 (502)
T COG1070 289 CLGLPGWFIVMGANNTGGWLLEWLRELFGLAE---------SYPELLEEALA--VPAPAGAIGLLFLPYLSGERGPHADP 357 (502)
T ss_pred cccCCCeEEEEEEecccHHHHHHHHHHhcccc---------CcHHHHHHHHh--ccCCCCCCCcEEeccccCCcCCCCCc
Confidence 111 123555555566778877765421 01111111111 11112223446666664211
Q ss_pred ---CCCeEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCC
Q psy2902 361 ---GAPVHLNLKITRAKLELLVDELITRTIEPCRIAIKDA-GIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDIN 436 (945)
Q Consensus 361 ---~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~-~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~ 436 (945)
+.........++.+|.+.+.+.+........+.|.+. +.. ++.|.++||+|+++.|.+++++.+|.++..+..
T Consensus 358 ~~r~~~~g~~~~~~~~~l~ravlEgva~~l~~~~~~l~~~~g~~---~~~i~~~GGgars~~w~Qi~Ad~~g~~v~~~~~ 434 (502)
T COG1070 358 AARGGFVGLTLPHTRAHLARAVLEGVAFALADGLEALEELGGKP---PSRVRVVGGGARSPLWLQILADALGLPVVVPEV 434 (502)
T ss_pred cceeEEEccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---ccEEEEECCcccCHHHHHHHHHHcCCeeEecCc
Confidence 1123444667899999888888877777777777776 433 578999999999999999999999999985543
Q ss_pred CCchhhhhHHHhhhhccC
Q psy2902 437 PDEAVAVGAAIQGSVLSG 454 (945)
Q Consensus 437 p~~avA~GAa~~a~~~~~ 454 (945)
.|+.+.|+|+.++...+
T Consensus 435 -~e~~a~g~A~~~~~~~~ 451 (502)
T COG1070 435 -EEAGALGGAALAAAALG 451 (502)
T ss_pred -ccchHHHHHHHHHHHhC
Confidence 45555555555554443
No 119
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=99.11 E-value=2.7e-10 Score=134.69 Aligned_cols=316 Identities=14% Similarity=0.083 Sum_probs=161.3
Q ss_pred hhCCCchhHHHHHhhCCCCCcHHHHhhhcCCCeeEEecCCCceEEEECCeeeC-hhhHHH-HHHH-----H--HHHHHHH
Q psy2902 128 VTNPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLA-PPQISA-EVLR-----K--MKKTAED 198 (945)
Q Consensus 128 ~~~~~~~i~~~k~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ev~a-~~L~-----~--l~~~a~~ 198 (945)
...+-...+.+.+++|.+.++|++.+....+. ...+++.+.+.|...+ ...... .++. . .-+...+
T Consensus 129 tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~l-----~~~dyl~~~LTG~~~~d~~~as~~~~~d~~d~~~~~W~~ell~ 203 (541)
T TIGR01315 129 VGGKMSVEMEIPKVLWLKNNMPPELFARCKFF-----DLTDFLTWRATGKEIRSFCSVVCKWGFVPVDGSNKGWQEDFYE 203 (541)
T ss_pred hCCeeCcchhHHHHHHHHHhChHHHHHhhhhc-----chhhhheeeeecchhHhHhHHhHhhhccccccccCCCCHHHHH
Confidence 34455566677888898888888877665432 2345677778775432 222221 1111 0 0111122
Q ss_pred HhCCCCCcE---EEE--cCCCC--CHHHHH-HHHHHHHHcCC----ccceecchhHHHHHHhcc---CCCCCCC--ceEE
Q psy2902 199 YLGGEITEA---VIT--VPAYF--NDAQRQ-ATKDAGRIAGL----EVKRIINEPTAAALAFGL---DKSGKSD--RNIV 261 (945)
Q Consensus 199 ~~~~~~~~~---Vit--VPa~~--~~~qr~-~l~~Aa~~AGl----~~v~li~Ep~AAAl~~~~---~~~~~~~--~~vl 261 (945)
.++.+ .. -+. .|... ++.... ...++|+..|| +++....+..|++++.+. ....... ...+
T Consensus 204 ~~Gi~--~~~~~~l~~~lp~i~~~~~~~G~~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lG~g~~~~~~~g~~~~~~~~~ 281 (541)
T TIGR01315 204 TIGLG--ELVTDNFIRMGGSWMSPGELVGGGLTAEAAQELGLPAGTAVGSGLIDAHAGWIGTVGAKVAENGDVSQAFTRL 281 (541)
T ss_pred HcCCh--hhhhccccccCCcccCCCcccccccCHHHHHHhCCCCCCeEeechHhhhccccccccccccccccccCCCCcE
Confidence 22222 10 010 01111 222334 55688888877 456677888888887743 2210000 1123
Q ss_pred EEEeCCcceEEEEEEEEeecCCceEEEE-Ee--cCC-CCCchHHHHHHHHHHHHHHHHHHhCC--CC-ccCHHHHHHHHH
Q psy2902 262 VYDLGGGTFDVSIIEIADVDGEKQFEVL-ST--NGD-TFLGGEDFDQRIIDYILDEFNKINGI--DL-RKDSIALQRIKA 334 (945)
Q Consensus 262 VvD~GggT~dvsv~~~~~~~~~~~~~vl-~~--~~~-~~lGG~~iD~~l~~~l~~~~~~~~~~--~~-~~~~~~~~~L~~ 334 (945)
.+-+|.+++...+..- ........... .. .+. ...|+..--...++|+.+.+...... .. ..+...+..|.+
T Consensus 282 ~~~~GTs~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 360 (541)
T TIGR01315 282 AAVAGTSTCHMAMTKG-PVFVPGVWGPYRDALIPGYWLAEGGQSAAGELMDHMLETHVAYDETVKEAEAAGKNIYDYLNE 360 (541)
T ss_pred EEEecCceEEEEecCC-CccCCceeecccCccCCCceEEecCccchhHHHHHHHHhCccchHHHHHHHhccCcHHHHHHH
Confidence 3446665553332211 01011111101 00 110 11133444446677888764210000 00 000112333334
Q ss_pred HHHHHHHHhcCC-----cceeeeeceeecc---------CCCCeEEEEEEcHHH---HHHHHHHHHHHHHHHHHHHHHHc
Q psy2902 335 SAERAKIELSSS-----KQTEINEPYIAMS---------NGAPVHLNLKITRAK---LELLVDELITRTIEPCRIAIKDA 397 (945)
Q Consensus 335 ~~e~~K~~Ls~~-----~~~~i~i~~~~~~---------~~~~~~~~~~itr~~---~e~~~~~~i~~i~~~i~~~l~~~ 397 (945)
..++.-...... ....+.+|++... .+...+++...+|++ |.+.+-+.+......+.+.+++.
T Consensus 361 ~~~~~~~~~~~~~~~~~~~gl~flP~l~G~r~P~~dp~arG~~~Gl~~~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~ 440 (541)
T TIGR01315 361 HLKEMAAKTNAPSISYLVRHFHVYPDLWGNRSPIADPNMRGVIIGLSMDRSKDGLALLYYATMEFIAYGTRQIVEAMNTA 440 (541)
T ss_pred HHHHhhhhcccCccccCCCceEEccccccCcCCCCCCCCceEEECCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333222111111 1345778877522 122345666778844 44444454544455555666655
Q ss_pred CCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhccCC
Q psy2902 398 GIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSGD 455 (945)
Q Consensus 398 ~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~~~ 455 (945)
+. .++.|.++||+++++.|.|++++.+|.++.+..+ .++.|+|||++|+...|.
T Consensus 441 g~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~-~e~~alGaA~lA~~~~G~ 494 (541)
T TIGR01315 441 GH---TIKSIFMSGGQCQNPLLMQLIADACDMPVLIPYV-NEAVLHGAAMLGAKAAGT 494 (541)
T ss_pred CC---CccEEEEecCcccCHHHHHHHHHHHCCeeEecCh-hHHHHHHHHHHHHHhcCc
Confidence 43 4789999999999999999999999999986654 458899999999877664
No 120
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=99.10 E-value=1.4e-09 Score=120.96 Aligned_cols=209 Identities=20% Similarity=0.205 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEEc----CC------------CCCHHHHHHHHHHHHHcCCccceecchhHHHHHHhccC
Q psy2902 188 VLRKMKKTAEDYLGGEITEAVITV----PA------------YFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFGLD 251 (945)
Q Consensus 188 ~L~~l~~~a~~~~~~~~~~~VitV----Pa------------~~~~~qr~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~ 251 (945)
+-..+...+++++..++.++++-. +. -......+...++++.|||+...+--++.|.+-.+...
T Consensus 90 l~~~I~~Ea~~~iP~~~~e~~~D~~vl~~~~~~~~~~~Vll~Aa~k~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~ 169 (340)
T PF11104_consen 90 LEEAIRWEAEQYIPFPLEEVVFDYQVLGESEDGEEKMEVLLVAAPKEIVESYVELFEEAGLKPVAVDVEAFALARLFEFL 169 (340)
T ss_dssp HHHHHHHHHGGG-SS----EEEEEEESS-GS-TTSEEEEEEEEEEHHHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHH
T ss_pred HHHHHHHHHHhhCCCChhHeEEEEEEeccCCCCCCceEEEEEEEcHHHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHH
Confidence 344567777777776655543311 00 01245567778999999999887777777765444331
Q ss_pred ----CCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHH
Q psy2902 252 ----KSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSI 327 (945)
Q Consensus 252 ----~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~ 327 (945)
........++++|+|+.++.++++.- +.+.. .....+||.++++.+.+.+.-.
T Consensus 170 ~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~------g~~~f---~R~i~~G~~~l~~~i~~~~~i~-------------- 226 (340)
T PF11104_consen 170 EPQLPDEEDAETVALVDIGASSTTVIIFQN------GKPIF---SRSIPIGGNDLTEAIARELGID-------------- 226 (340)
T ss_dssp HHTST----T-EEEEEEE-SS-EEEEEEET------TEEEE---EEEES-SHHHHHHHHHHHTT----------------
T ss_pred HHhCCcccccceEEEEEecCCeEEEEEEEC------CEEEE---EEEEeeCHHHHHHHHHHhcCCC--------------
Confidence 11124567999999999999999863 22222 1124569999999998653222
Q ss_pred HHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCCCCCC
Q psy2902 328 ALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEPCRIAIK--DAGIKVSDIN 405 (945)
Q Consensus 328 ~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~--~~~~~~~~i~ 405 (945)
..+||+.|..-+... +...+.+.+.++.+...|.+.++ ........|+
T Consensus 227 -----~~~Ae~~k~~~~l~~-------------------------~~~~~~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~ 276 (340)
T PF11104_consen 227 -----FEEAEELKRSGGLPE-------------------------EYDQDALRPFLEELAREIRRSLDFYQSQSGGESIE 276 (340)
T ss_dssp -----HHHHHHHHHHT-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH------S
T ss_pred -----HHHHHHHHhcCCCCc-------------------------chHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 345666665421100 22345566666777777776666 2223345799
Q ss_pred cEEEecCccccHHHHHHHHHHhCCCCCC---------CC----------CCCchhhhhHHHhh
Q psy2902 406 DIILVGGMTRMPKVQEKVKEFFGKDPRR---------DI----------NPDEAVAVGAAIQG 449 (945)
Q Consensus 406 ~ViLvGG~s~~p~v~~~l~~~fg~~~~~---------~~----------~p~~avA~GAa~~a 449 (945)
.|+|+||+|+++.+.+.|++.++.++.. .. .|..++|.|+|+.+
T Consensus 277 ~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~avA~GLAlR~ 339 (340)
T PF11104_consen 277 RIYLSGGGARLPGLAEYLSEELGIPVEVINPFKNIKLDPKINSEYLQEDAPQFAVALGLALRG 339 (340)
T ss_dssp EEEEESGGGGSTTHHHHHHHHHTSEEEE--GGGGSB--TTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCccchhhHHHHHHHHHCCceEEcChHHhCccCcccChhhhhhhhhHHHHHHHHhhcC
Confidence 9999999999999999999999876531 11 25568999999864
No 121
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=99.09 E-value=1.5e-10 Score=94.27 Aligned_cols=61 Identities=54% Similarity=1.185 Sum_probs=49.2
Q ss_pred CCCCCccccccCcCcccCCCCCCCceEeEee----ceeeeeecCCCCCCceEEe-ecCCcccCCCc
Q psy2902 719 CKSCYGNGAKKGTSPISCFTCSGQGQVRMQQ----GFFSIQQTCPKCQGAGKVI-PHPCLDCNGIG 779 (945)
Q Consensus 719 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----~~~~~~~~C~~C~G~g~~~-~~~c~~c~G~g 779 (945)
|+.|+|+|........+|+.|+|+|++.+.. ++++++.+|+.|+|.|+++ .++|..|+|.|
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g 66 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG 66 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence 8999999999888999999999999986654 6678999999999999998 99999999975
No 122
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=99.08 E-value=5.6e-10 Score=132.08 Aligned_cols=222 Identities=17% Similarity=0.159 Sum_probs=128.6
Q ss_pred HHHHHHHHHcCC----ccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEE---EecC
Q psy2902 221 QATKDAGRIAGL----EVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVL---STNG 293 (945)
Q Consensus 221 ~~l~~Aa~~AGl----~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl---~~~~ 293 (945)
....++|+..|| +++.-..+..||+++.+... .+. ++.-+|.+++...+..- ........... ...+
T Consensus 247 ~v~~~~A~~~GL~~g~pV~~g~~D~~aa~~g~g~~~---~g~--~~~~~GTs~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 320 (536)
T TIGR01234 247 TLTPEWAQRTGLPEGVVVAVGNFDAHVGAVAAGIAQ---PGA--LVKIMGTSTCHVLIGDK-QRAVPGMCGVVDGGIVPG 320 (536)
T ss_pred ccCHHHHHHhCCCCCCeEEecchhHhhhhhcccccc---CCc--EEEEEccceEEEEecCc-cccCCceeeeccCcccCC
Confidence 344577777776 45666788888888877543 233 33446666553332210 00001100000 0000
Q ss_pred -CCCCchHHHHHHHHHHHHHHHHHHhC-CCC-ccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccC---------C
Q psy2902 294 -DTFLGGEDFDQRIIDYILDEFNKING-IDL-RKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSN---------G 361 (945)
Q Consensus 294 -~~~lGG~~iD~~l~~~l~~~~~~~~~-~~~-~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~---------~ 361 (945)
....|+........+|+.+.+..... ... ......+..|.+.+++. .......+.+|++.... +
T Consensus 321 ~~~~~~~~~~~G~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~----p~g~~gllflP~l~Ger~P~~d~~arG 396 (536)
T TIGR01234 321 FIGYEAGQSAVGDIFAWFGKVCVPPELKTEANASQKQLHEALSEAAAKQ----PSGEHGLVALDWFNGNRSPLVDQRLKG 396 (536)
T ss_pred eeEEeccccchHHHHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHhC----CCCCCCeEecchhccCCCCCCCCcceE
Confidence 00113444455566787777621100 000 00001233444444332 22333446677664211 1
Q ss_pred CCeEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCc-cccHHHHHHHHHHhCCCCCCCCCCCch
Q psy2902 362 APVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGM-TRMPKVQEKVKEFFGKDPRRDINPDEA 440 (945)
Q Consensus 362 ~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~-s~~p~v~~~l~~~fg~~~~~~~~p~~a 440 (945)
...+++...+|.+|.+.+-+.+......+.+.|++.+. .++.|+++||+ |+++.|.+++++.||.++.+..+ .++
T Consensus 397 ~~~Gl~~~~~~~~~~RAvlEgia~~~~~~l~~l~~~g~---~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~-~e~ 472 (536)
T TIGR01234 397 VITGLTLATDAPLLYRALIEATAFGTRMIMETFTDSGV---PVEELMAAGGIARKNPVIMQIYADVTNRPLQIVAS-DQA 472 (536)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CcceEEEeCCccccCHHHHHHHHHhhCCeeEeccC-Ccc
Confidence 22345567789999988888877777777777776554 47899999999 99999999999999999976655 468
Q ss_pred hhhhHHHhhhhccCCC
Q psy2902 441 VAVGAAIQGSVLSGDR 456 (945)
Q Consensus 441 vA~GAa~~a~~~~~~~ 456 (945)
.|+|||+.|+...|..
T Consensus 473 ~a~GaA~lA~~~~G~~ 488 (536)
T TIGR01234 473 PALGAAIFAAVAAGVY 488 (536)
T ss_pred hhHHHHHHHHHHcCCc
Confidence 8999999999776643
No 123
>PRK04123 ribulokinase; Provisional
Probab=99.08 E-value=6.1e-10 Score=132.36 Aligned_cols=220 Identities=15% Similarity=0.164 Sum_probs=125.8
Q ss_pred HHHHHHHHcCC----ccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEE--e--cC
Q psy2902 222 ATKDAGRIAGL----EVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLS--T--NG 293 (945)
Q Consensus 222 ~l~~Aa~~AGl----~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~--~--~~ 293 (945)
...+||+..|| +++....+..|++++.+. . .+. +++-+|.+++-..+..- ............ . ..
T Consensus 252 v~~~~a~~~GL~~g~pV~~g~~D~~aa~~G~g~-~---~g~--~~~~~GTs~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 324 (548)
T PRK04123 252 LTAEWAQRLGLPEGVAVSVGAFDAHMGAVGAGA-E---PGT--LVKVMGTSTCDILLADK-QRAVPGICGQVDGSIVPGL 324 (548)
T ss_pred cCHHHHHHhCCCCCCeEEecchhhhhhhcccCc-C---CCc--EEEEecCceEEEEecCC-ccccCceeecccCcccCCe
Confidence 34577777777 355677888999988876 3 122 23345665542222211 000001000000 0 00
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHhC-CCC-ccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccC---------CC
Q psy2902 294 DTFLGGEDFDQRIIDYILDEFNKING-IDL-RKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSN---------GA 362 (945)
Q Consensus 294 ~~~lGG~~iD~~l~~~l~~~~~~~~~-~~~-~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~---------~~ 362 (945)
-...|+..--...++|+.+.+..... ... ......+..|.+.++++ .......+.+|++.... +.
T Consensus 325 ~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~----~~g~~gl~f~P~l~Ger~P~~~~~arg~ 400 (548)
T PRK04123 325 IGYEAGQSAVGDIFAWFARLLVPPEYKDEAEARGKQLLELLTEAAAKQ----PPGEHGLVALDWFNGRRTPLADQRLKGV 400 (548)
T ss_pred eeecccccchHHHHHHHHHhcchHhHHHHHHhcCCcHHHHHHHHHHhc----CCCCCceEEcccccCCCCCCCCCCCceE
Confidence 00123333344566788776631000 000 00011233344444333 33334456777764221 12
Q ss_pred CeEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCc-cccHHHHHHHHHHhCCCCCCCCCCCchh
Q psy2902 363 PVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGM-TRMPKVQEKVKEFFGKDPRRDINPDEAV 441 (945)
Q Consensus 363 ~~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~-s~~p~v~~~l~~~fg~~~~~~~~p~~av 441 (945)
..+++...+|.++.+.+-+.+......+.+.|++.+. .++.|+++||+ |+++.|.|++++.||.++.+.. +.++.
T Consensus 401 ~~Gl~~~~~~~~l~RAvlEgia~~~~~~~e~l~~~g~---~~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~~-~~e~~ 476 (548)
T PRK04123 401 ITGLTLGTDAPDIYRALIEATAFGTRAIMECFEDQGV---PVEEVIAAGGIARKNPVLMQIYADVLNRPIQVVA-SDQCP 476 (548)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CcceEEEeCCCcccCHHHHHHHHHhcCCceEecC-ccccc
Confidence 2344567789998888777777666777777776554 36899999999 9999999999999999996544 56788
Q ss_pred hhhHHHhhhhccCCC
Q psy2902 442 AVGAAIQGSVLSGDR 456 (945)
Q Consensus 442 A~GAa~~a~~~~~~~ 456 (945)
|+|||+.|+...|..
T Consensus 477 alGaA~lA~~~~G~~ 491 (548)
T PRK04123 477 ALGAAIFAAVAAGAY 491 (548)
T ss_pred hHHHHHHHHHHhccC
Confidence 999999998766643
No 124
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=99.06 E-value=5.9e-10 Score=131.50 Aligned_cols=82 Identities=20% Similarity=0.175 Sum_probs=66.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhh
Q psy2902 371 TRAKLELLVDELITRTIEPCRIAIKDA-GIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQG 449 (945)
Q Consensus 371 tr~~~e~~~~~~i~~i~~~i~~~l~~~-~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a 449 (945)
+|.++-+.+-+.+......+.+.+++. +. .++.|+++||+++++.|.|++++.+|.++....+ .++.++|||+.|
T Consensus 379 ~~~~~~RAvlEgia~~~~~~l~~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~-~e~~alGaA~lA 454 (520)
T PRK10939 379 NKATLFRALEENAAIVSACNLQQIAAFSGV---FPSSLVFAGGGSKGKLWSQILADVTGLPVKVPVV-KEATALGCAIAA 454 (520)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEeCCcccCHHHHHHHHHhcCCeeEEecc-cCchHHHHHHHH
Confidence 788888888777776666677777653 44 3689999999999999999999999999976554 467899999999
Q ss_pred hhccCCC
Q psy2902 450 SVLSGDR 456 (945)
Q Consensus 450 ~~~~~~~ 456 (945)
+...|..
T Consensus 455 ~~~~G~~ 461 (520)
T PRK10939 455 GVGAGIY 461 (520)
T ss_pred HHHhCCC
Confidence 8777643
No 125
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.01 E-value=4.1e-10 Score=122.34 Aligned_cols=73 Identities=23% Similarity=0.383 Sum_probs=58.7
Q ss_pred EeecCCcccCCCceEee-------------------eeeEEEEeecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEec
Q psy2902 767 VIPHPCLDCNGIGRIKR-------------------NKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKP 827 (945)
Q Consensus 767 ~~~~~c~~c~G~g~~~~-------------------~~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~ 827 (945)
+.+|+.|+|.|.++..+ ...++|+||+|+++|++++++|+|+|..+ .+|||||+|+|.+
T Consensus 198 v~ph~~f~r~g~DL~~~~~Isl~~al~G~~~~i~~~~g~v~v~ip~g~~~g~~~ri~g~G~p~~~--~~GdL~v~~~v~~ 275 (306)
T PRK10266 198 IAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKK--QTGDLYAVLKIVM 275 (306)
T ss_pred EcCCCCeEEeCCceEEEEecCHHHHhCCCEEEeeCCCccEEEEeCCCcCCCCEEEECCCCCCCCC--CCCCEEEEEEEEC
Confidence 46899999999544433 23368999999999999999999998653 5899999999999
Q ss_pred CCcccccCCCceeE
Q psy2902 828 HKVFERDGDDLHYE 841 (945)
Q Consensus 828 ~~~~~r~g~dl~~~ 841 (945)
|+.++.++..++..
T Consensus 276 P~~l~~~q~~l~~~ 289 (306)
T PRK10266 276 PPKPDEKTAALWQQ 289 (306)
T ss_pred CCCCCHHHHHHHHH
Confidence 99988777655443
No 126
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=99.00 E-value=8.9e-09 Score=120.80 Aligned_cols=203 Identities=17% Similarity=0.171 Sum_probs=119.3
Q ss_pred cCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEe---ecCCceEEEEEe-cCC----C-CCchH
Q psy2902 230 AGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIAD---VDGEKQFEVLST-NGD----T-FLGGE 300 (945)
Q Consensus 230 AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~---~~~~~~~~vl~~-~~~----~-~lGG~ 300 (945)
.|++++.-..+..|++++.+.... +..++ -+|. ..+.++.... ............ ..+ . ..|+.
T Consensus 231 ~g~pV~~g~~D~~aa~~G~g~~~~---g~~~~--~~GT--s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 303 (493)
T TIGR01311 231 AEIPITGVLGDQQAALFGQACFKP---GQAKN--TYGT--GCFLLMNTGEKPVISKHGLLTTVAYQLGGKKPVYALEGSV 303 (493)
T ss_pred CCceEEEecccHHHHHhhCcCCCC---CceEE--eecc--cceEeeecCCccccCCCCceEEEEEecCCCCceEEEEeeh
Confidence 466777778899999998876442 22222 2343 3332222211 011111111111 111 1 12333
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeecc---------CCCCeEEEEEEc
Q psy2902 301 DFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMS---------NGAPVHLNLKIT 371 (945)
Q Consensus 301 ~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~---------~~~~~~~~~~it 371 (945)
..-...++|+++.|.. . .. ...+.+.+... . .....+.+|++... .+...+++...+
T Consensus 304 ~~~g~~~~W~~~~~~~----~--~~---~~~~~~~a~~~----~-g~~g~~~~P~l~G~r~P~~~~~arg~~~Gl~~~~~ 369 (493)
T TIGR01311 304 FVAGAAVQWLRDNLKL----I--KH---AAESEALARSV----E-DNGGVYFVPAFTGLGAPYWDPDARGAIFGLTRGTT 369 (493)
T ss_pred hhhHHHHHHHHHHhCC----C--CC---HHHHHHHHhcC----C-CCCCEEEeCcccCCCCCcCCCCCcEEEECcCCCCC
Confidence 3445567898887741 0 11 11222222211 1 22344667765421 112345566778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhh
Q psy2902 372 RAKLELLVDELITRTIEPCRIAIKDA-GIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGS 450 (945)
Q Consensus 372 r~~~e~~~~~~i~~i~~~i~~~l~~~-~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~ 450 (945)
+.++.+.+-+.+......+.+.|++. +. .++.|.++||+++++.|.+++++.||.++.... ..++.|+|||+.|+
T Consensus 370 ~~~l~rAvlEgia~~~~~~~~~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADv~g~pv~~~~-~~e~~alGaA~~a~ 445 (493)
T TIGR01311 370 KAHIARAALEAIAFQTRDVLEAMEKDAGV---EITKLRVDGGMTNNNLLMQFQADILGVPVVRPK-VTETTALGAAYAAG 445 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCceEEEecccccCHHHHHHHHHhcCCeeEecC-CCcchHHHHHHHHH
Confidence 99998888777777666666777653 43 368999999999999999999999999997544 45788999999998
Q ss_pred hccCCCC
Q psy2902 451 VLSGDRK 457 (945)
Q Consensus 451 ~~~~~~~ 457 (945)
...|...
T Consensus 446 ~~~G~~~ 452 (493)
T TIGR01311 446 LAVGYWK 452 (493)
T ss_pred hhcCcCC
Confidence 7776433
No 127
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=98.96 E-value=6.5e-09 Score=122.12 Aligned_cols=210 Identities=21% Similarity=0.259 Sum_probs=121.5
Q ss_pred HHHHHHHcCC----ccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEe-cCCCC-
Q psy2902 223 TKDAGRIAGL----EVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLST-NGDTF- 296 (945)
Q Consensus 223 l~~Aa~~AGl----~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~-~~~~~- 296 (945)
..++++..|| +++....+..|++++.+... ...+++-+|.+++-..+..-........+..... ..+..
T Consensus 215 ~~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~g~~~-----~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (481)
T TIGR01312 215 RPEVAARLGLSAGVPVAAGGGDNAAGAIGTGTVD-----PGDAMMSLGTSGVVYAVTDKPLPDPAGAVHGFCHALPGGWL 289 (481)
T ss_pred cHHHHHHhCCCCCCeEEecchHHHHHhhCCCccc-----CCcEEEEecCceEEEEecCCcccCcccceeeeeeecCCceE
Confidence 3456666665 45666788888888776433 2234445666654322211001111111222211 11111
Q ss_pred -CchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccC---------CCCeEE
Q psy2902 297 -LGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSN---------GAPVHL 366 (945)
Q Consensus 297 -lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~---------~~~~~~ 366 (945)
.|+..--...++|+.+.|.. .+ +..|.+.++++ .......+.+|++.... +...++
T Consensus 290 ~~~~~~~~g~~~~w~~~~~~~-------~~---~~~l~~~~~~~----~~~~~~~~~~p~~~G~r~P~~~~~~~g~~~gl 355 (481)
T TIGR01312 290 PMGVTLSATSSLEWFRELFGK-------ED---VEALNELAEQS----PPGAEGVTFLPYLNGERTPHLDPQARGSFIGL 355 (481)
T ss_pred EEeEehhhHHHHHHHHHHhCC-------Cc---HHHHHHHHhcC----CCCCCCeEEecccccCCCCCCCCCcceEEECC
Confidence 13333344567888877631 11 23344444333 22223345566553211 112344
Q ss_pred EEEEcHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhH
Q psy2902 367 NLKITRAKLELLVDELITRTIEPCRIAIKDA-GIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGA 445 (945)
Q Consensus 367 ~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~-~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GA 445 (945)
+...++.++-+.+-+.+......+.+.|++. +. .++.|+++||+++++.|.+++++.||.++.... ..++.|+||
T Consensus 356 ~~~~~~~~l~railEgia~~~~~~~~~l~~~~~~---~~~~i~~~GG~s~s~~~~Q~~Adv~g~pv~~~~-~~e~~a~Ga 431 (481)
T TIGR01312 356 THNTTRADLTRAVLEGVTFALRDSLDILREAGGI---PIQSIRLIGGGAKSPAWRQMLADIFGTPVDVPE-GEEGPALGA 431 (481)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CcceEEEeccccCCHHHHHHHHHHhCCceeecC-CCcchHHHH
Confidence 5566788888777666666666666666653 23 378999999999999999999999999987554 667889999
Q ss_pred HHhhhhccCC
Q psy2902 446 AIQGSVLSGD 455 (945)
Q Consensus 446 a~~a~~~~~~ 455 (945)
|++|+...+.
T Consensus 432 A~~a~~~~g~ 441 (481)
T TIGR01312 432 AILAAWALGE 441 (481)
T ss_pred HHHHHHhcCC
Confidence 9999877664
No 128
>PRK14299 chaperone protein DnaJ; Provisional
Probab=98.94 E-value=1e-09 Score=118.30 Aligned_cols=128 Identities=22% Similarity=0.369 Sum_probs=87.1
Q ss_pred CCCCCCCccceeecccccccccccee-----eEeeccccccCCCCCccccccCcCcccCCCCCCCceEeEeeceeeeeec
Q psy2902 683 NNKGSNGKDLRYNLEITLEQAAYGFN-----TSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQT 757 (945)
Q Consensus 683 ~~~~~~g~~~~~~l~~~~~~~~~g~~-----~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~ 757 (945)
+++.+...++.++|+..+.+.....+ ..+.+.. |...+. .-...|.|..
T Consensus 127 ~~g~dl~~~l~isL~ea~~G~~~~i~l~g~~~~V~Ip~----------G~~~G~----~ir~~g~G~~------------ 180 (291)
T PRK14299 127 RKGRDLEAELPLTLEEAYRGGEKVVEVAGERLSVRIPP----------GVREGQ----VIRLAGKGRQ------------ 180 (291)
T ss_pred CCCCCEEEEEEecHHHHhCCCeEEEeeCCEEEEEecCC----------CcCCCc----EEEECCCCCC------------
Confidence 45678889999999999988876543 3333321 111111 0011222210
Q ss_pred CCCCCCce----EEeecCCcccCCCceEee---------------e----eeEEEEeecCCCCCeEEEEcCCCCCCCCCC
Q psy2902 758 CPKCQGAG----KVIPHPCLDCNGIGRIKR---------------N----KTLEVKIPAGIENNMRIRSTGNGEPGLNGG 814 (945)
Q Consensus 758 C~~C~G~g----~~~~~~c~~c~G~g~~~~---------------~----~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~ 814 (945)
.|.= .+.+|+.|+|.|..+..+ . ..++|+||+|+++|++++++|+|+|.. ++
T Consensus 181 ----~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~v~tldG~~~v~ip~~~~~g~~~rl~g~G~p~~-~~ 255 (291)
T PRK14299 181 ----GGDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLDGPVEVTIPPRTQAGRKLRLKGKGWPRG-PA 255 (291)
T ss_pred ----CCCEEEEEEEcCCCCeEEECCEEEEEEecCHHHHhCCCEEEEECCCCCEEEEeCCCcCCCCEEEECCCCCCCC-CC
Confidence 0111 146799999999554443 2 235899999999999999999999963 35
Q ss_pred CCccEEEEEEEecCCcccccCCCceeE
Q psy2902 815 SNGNLYIEIHIKPHKVFERDGDDLHYE 841 (945)
Q Consensus 815 ~~Gdl~i~i~v~~~~~~~r~g~dl~~~ 841 (945)
.+|||||+|+|..|+.++.++.+++..
T Consensus 256 ~~GDL~v~~~V~~P~~l~~~~~~~l~~ 282 (291)
T PRK14299 256 GRGDQYAEVRITIPTRPTPEEERLYKQ 282 (291)
T ss_pred CCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999888776554
No 129
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=98.90 E-value=1.2e-08 Score=112.11 Aligned_cols=173 Identities=20% Similarity=0.244 Sum_probs=95.6
Q ss_pred ccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHH
Q psy2902 233 EVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILD 312 (945)
Q Consensus 233 ~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~ 312 (945)
..+.+++|+.||.+.+.... .....++|+|+||+|+|++++.- ..-.+-...+...+|-..+...+.+.+..
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~~--~~~~~~lVVDIGG~T~Dv~~v~~------~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~ 212 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMDL--DEDESVLVVDIGGRTTDVAVVRG------GLPDISKCSGTPEIGVSDLYDAIAQALRS 212 (318)
T ss_dssp EEEEEEESSHHHHHHHHHTS---TTSEEEEEEE-SS-EEEEEEEG------GG--EEEEEEETTSSTHHHHHHHHHHTT-
T ss_pred eeEEEEcccHHHHHHHHHhh--cccCcEEEEEcCCCeEEeeeecC------CccccchhccCCchhHHHHHHHHHHHHHH
Confidence 45778999999999887663 34567999999999999998852 11112222334567888888887776655
Q ss_pred HHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHHHHH
Q psy2902 313 EFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEPCRI 392 (945)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~ 392 (945)
.... .+......+..... -+..+.. .+.. .-..+++.++++..++++.+.|.+
T Consensus 213 ~~~~-------~s~~~~~~ii~~~~-~~~~~~~----~i~~---------------~~~~~~v~~~i~~~~~~l~~~i~~ 265 (318)
T PF06406_consen 213 AGID-------TSELQIDDIIRNRK-DKGYLRQ----VIND---------------EDVIDDVSEVIEEAVEELINRILR 265 (318)
T ss_dssp -SBH-------HHHHHHHHHHHTTT--HHHHHH----HSSS---------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCC-------CcHHHHHHHHHhhh-ccceecc----cccc---------------hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1100 00000111111000 0000000 0000 001234445555555555555555
Q ss_pred HHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCC---CCCCCCCCCchhhhhHH
Q psy2902 393 AIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK---DPRRDINPDEAVAVGAA 446 (945)
Q Consensus 393 ~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~---~~~~~~~p~~avA~GAa 446 (945)
.+.+ ..+++.|+|+||+| ..+.+.|++.|+. .+....||..|-|+|-+
T Consensus 266 ~~~~----~~~~~~I~~vGGGA--~ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 266 ELGD----FSDIDRIFFVGGGA--ILLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp HHTT----S-S-SEEEEESTTH--HHHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred HHhh----hccCCeEEEECCcH--HHHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 4432 34678999999998 6678999999873 45678899999999864
No 130
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.90 E-value=3.9e-08 Score=104.18 Aligned_cols=171 Identities=16% Similarity=0.187 Sum_probs=100.6
Q ss_pred eecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHHHHH
Q psy2902 236 RIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFN 315 (945)
Q Consensus 236 ~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~ 315 (945)
..++|.+|.+.+.....+ ..+ .|+|+||..+-+..++ ++.+.-.........|+-.|.+.+++.+-
T Consensus 73 ~~~~ei~~~~~g~~~~~~--~~~--~vidiGgqd~k~i~~~------~g~~~~~~~n~~ca~Gtg~f~e~~a~~l~---- 138 (248)
T TIGR00241 73 KIVTEISCHGKGANYLAP--EAR--GVIDIGGQDSKVIKID------DGKVDDFTMNDKCAAGTGRFLEVTARRLG---- 138 (248)
T ss_pred CceEEhhHHHHHHHHHCC--CCC--EEEEecCCeeEEEEEC------CCcEeeeeecCcccccccHHHHHHHHHcC----
Confidence 367888887766544332 223 4789999988887774 23333233344445577767777665432
Q ss_pred HHhCCCCccCHHHHHHHHHHHHHHHHHhcCC----cceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHHHH
Q psy2902 316 KINGIDLRKDSIALQRIKASAERAKIELSSS----KQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEPCR 391 (945)
Q Consensus 316 ~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~----~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~ 391 (945)
.+ .++++.++..-... ..-.++.+.-... .+.-..++ ++++..+++.+...+.
T Consensus 139 ----~~-----------~~e~~~~~~~~~~~~~~~~~c~vf~~s~vi~-----~l~~g~~~---~di~~~~~~~va~~i~ 195 (248)
T TIGR00241 139 ----VS-----------VEELGSLAEKADRKAKISSMCTVFAESELIS-----LLAAGVKK---EDILAGVYESIAERVA 195 (248)
T ss_pred ----CC-----------HHHHHHHHhcCCCCCCcCCEeEEEechhHHH-----HHHCCCCH---HHHHHHHHHHHHHHHH
Confidence 11 22333332221110 0011111100000 00001122 4556666666666666
Q ss_pred HHHHHcCCCCCCCC-cEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHh
Q psy2902 392 IAIKDAGIKVSDIN-DIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQ 448 (945)
Q Consensus 392 ~~l~~~~~~~~~i~-~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~ 448 (945)
..+.... ++ .|+|+||.++++.|.+.+++.++.++..+.+|..+.|+|||++
T Consensus 196 ~~~~~~~-----~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 196 EMLQRLK-----IEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred HHHhhcC-----CCCCEEEECccccCHHHHHHHHHHhCCcEEcCCCccHHHHHHHHhC
Confidence 6665443 34 8999999999999999999999999998999999999999974
No 131
>KOG0679|consensus
Probab=98.86 E-value=1.4e-07 Score=99.24 Aligned_cols=181 Identities=16% Similarity=0.146 Sum_probs=121.5
Q ss_pred eEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEe--eC------CcEEecHHHHHhhhhCCCchhHHHHHhhCC
Q psy2902 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQ--EN------GEILVGAPAKRQAVTNPKNTIYAAKRLIGR 144 (945)
Q Consensus 73 viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~--~~------~~~~~G~~A~~~~~~~~~~~i~~~k~llg~ 144 (945)
.|-||.|+-.++++|...+-|..+. ||++... .+ +..+++..|... ..
T Consensus 13 alViDpGS~~traGyaged~Pk~il--------PS~~G~~tk~~~d~~~~~~~y~~~~ai~~--pr-------------- 68 (426)
T KOG0679|consen 13 ALVIDPGSHTTRAGYAGEDSPKAIL--------PSVYGKVTKTDGDAEDKKGYYVDENAIHV--PR-------------- 68 (426)
T ss_pred eEEEeCCCceEeccccCCCCccccc--------cceeeeeecccCccccccceEeechhccC--CC--------------
Confidence 5889999999999999887776553 7777641 11 112444433321 00
Q ss_pred CCCcHHHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHH
Q psy2902 145 KFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATK 224 (945)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~ 224 (945)
++..+.-.+.+..+...|++.+.+++..+.-.. ....-.-++||-|++-+.+.|+.+.
T Consensus 69 ---------------------~gmEv~~~i~nGlv~dWD~~~~~w~~~~~~~Lk-~~p~ehP~litEp~wN~~~~Rek~~ 126 (426)
T KOG0679|consen 69 ---------------------PGMEVKTPIKNGLVEDWDLFEMQWRYAYKNQLK-VNPEEHPVLITEPPWNTRANREKLT 126 (426)
T ss_pred ---------------------CCCeeccchhcCCcccHHHHHHHHHHHHhhhhh-cCccccceeeecCCCCcHHHHHHHH
Confidence 111122223345566778888888887753321 2222346799999877888888776
Q ss_pred HH-HHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHH
Q psy2902 225 DA-GRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFD 303 (945)
Q Consensus 225 ~A-a~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD 303 (945)
++ .+...++...|+.+|+|+|++.+. .+-||+|+|++++.++-+. ++.+--.+.. -..+||+.++
T Consensus 127 ElmFE~~nvPAf~L~k~~v~~AFA~Gr-------stalVvDiGa~~~svsPV~------DG~Vlqk~vv-ks~laGdFl~ 192 (426)
T KOG0679|consen 127 ELMFEKLNVPAFYLAKTAVCTAFANGR-------STALVVDIGATHTSVSPVH------DGYVLQKGVV-KSPLAGDFLN 192 (426)
T ss_pred HHHHhhcCCceEEEechHHHHHHhcCC-------CceEEEEecCCCceeeeee------cceEeeeeeE-ecccchHHHH
Confidence 65 467788889999999999998754 3479999999999999774 2333222322 2568999999
Q ss_pred HHHHHHHHHH
Q psy2902 304 QRIIDYILDE 313 (945)
Q Consensus 304 ~~l~~~l~~~ 313 (945)
..+.+.|..+
T Consensus 193 ~~~~q~l~~~ 202 (426)
T KOG0679|consen 193 DQCRQLLEPK 202 (426)
T ss_pred HHHHHHHhhc
Confidence 9999988765
No 132
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.84 E-value=4e-07 Score=94.75 Aligned_cols=189 Identities=18% Similarity=0.238 Sum_probs=117.4
Q ss_pred HHHHHHHHHhCCCCCc-----EEEEcCCCCC-----------HHHHHHHHHHHHHcCCccceecchhHHHHHHhccC---
Q psy2902 191 KMKKTAEDYLGGEITE-----AVITVPAYFN-----------DAQRQATKDAGRIAGLEVKRIINEPTAAALAFGLD--- 251 (945)
Q Consensus 191 ~l~~~a~~~~~~~~~~-----~VitVPa~~~-----------~~qr~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~--- 251 (945)
.+...|..++..++.+ .+++-++.-. .+..+...+|+++|||+...+--|.-|.--+|...
T Consensus 106 ~V~~ea~~y~PyP~EEv~lDy~vlg~~~~~~e~v~Vll~AtrkE~v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~ 185 (354)
T COG4972 106 QVESEASRYIPYPLEEVNLDYQVLGPSANEPEKVQVLLVATRKEVVESRIDAFELAGLEPKVLDVESFALLRAYRLLASQ 185 (354)
T ss_pred HHHHHHhhcCCCchhhcccceEEeccccCCCccEEEEEEEeehhhhHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHH
Confidence 3446666666544332 3454444332 23345668899999999877777777776555411
Q ss_pred -CCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHH
Q psy2902 252 -KSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQ 330 (945)
Q Consensus 252 -~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~ 330 (945)
......-.++|+|+|+..+.+.++.- +...+. ....+|+++++..+.+. ++++
T Consensus 186 ~~~~~a~~~vav~~Igat~s~l~vi~~----gk~ly~-----r~~~~g~~Qlt~~i~r~--------~~L~--------- 239 (354)
T COG4972 186 FGPEEAAMKVAVFDIGATSSELLVIQD----GKILYT-----REVPVGTDQLTQEIQRA--------YSLT--------- 239 (354)
T ss_pred hCCchhhhhheeeeecccceEEEEEEC----CeeeeE-----eeccCcHHHHHHHHHHH--------hCCC---------
Confidence 11122233789999999999999874 222222 24567999999888743 2333
Q ss_pred HHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCCCCCCcEE
Q psy2902 331 RIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEPCRIAIKD--AGIKVSDINDII 408 (945)
Q Consensus 331 ~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~--~~~~~~~i~~Vi 408 (945)
...++.+|....... +--.+...++++.+.+.|.+.|+- +.-...+|+.|+
T Consensus 240 --~~~a~~~k~~~~~P~-------------------------~y~~~vl~~f~~~l~~ei~Rslqfy~~~s~~~~id~i~ 292 (354)
T COG4972 240 --EEKAEEIKRGGTLPT-------------------------DYGSEVLRPFLGELTQEIRRSLQFYLSQSEMVDIDQIL 292 (354)
T ss_pred --hhHhHHHHhCCCCCC-------------------------chhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeEEE
Confidence 345666665433221 111234455555555555555542 222445799999
Q ss_pred EecCccccHHHHHHHHHHhCCCCC
Q psy2902 409 LVGGMTRMPKVQEKVKEFFGKDPR 432 (945)
Q Consensus 409 LvGG~s~~p~v~~~l~~~fg~~~~ 432 (945)
|.||++.+-.+.+++.+.++.++.
T Consensus 293 LaGggA~l~gL~~~i~qrl~~~t~ 316 (354)
T COG4972 293 LAGGGASLEGLAAAIQQRLSIPTE 316 (354)
T ss_pred EecCCcchhhHHHHHHHHhCCCeE
Confidence 999999999999999999986654
No 133
>PLN02669 xylulokinase
Probab=98.83 E-value=4.7e-08 Score=115.36 Aligned_cols=210 Identities=11% Similarity=0.068 Sum_probs=116.4
Q ss_pred CHHHHHHHHHHHHHcCC----ccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEe
Q psy2902 216 NDAQRQATKDAGRIAGL----EVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLST 291 (945)
Q Consensus 216 ~~~qr~~l~~Aa~~AGl----~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~ 291 (945)
..........+++..|| +++....+..|++++.+.... + .+++-+|.+++.+.+.........+.+ ...
T Consensus 253 ~~~~G~v~~~~a~~~Gl~~g~pV~~g~gD~~a~~~G~g~~~~---g--~~~~slGTs~~~~~~~~~~~~~~~~~~--~~~ 325 (556)
T PLN02669 253 HAVAGKIHPYFVQRFGFSSNCLVVQWSGDNPNSLAGLTLSTP---G--DLAISLGTSDTVFGITREPQPSLEGHV--FPN 325 (556)
T ss_pred CcceeeeCHHHHHHhCCCCCCEEEEecchHHHHHhccCCCCC---C--eEEEEEcccceEEEecCCCCCCCCcce--eeC
Confidence 34445556788888887 466778888899988876541 2 344557777664444321111111221 211
Q ss_pred c--CCCCC--chHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeee--------eceeec-
Q psy2902 292 N--GDTFL--GGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEIN--------EPYIAM- 358 (945)
Q Consensus 292 ~--~~~~l--GG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~--------i~~~~~- 358 (945)
. .+.++ ++..--...++|+++.+.. ..+..+.+.++.. .......+. +|.+..
T Consensus 326 ~~~~~~y~~~~~~~ngg~~~~w~r~~~~~----------~~~~~~~~~~~~~----~~g~~g~l~~~~~~~e~~P~~~~~ 391 (556)
T PLN02669 326 PVDPESYMVMLCYKNGSLTREDIRNRCAD----------GSWDVFNKLLEQT----PPLNGGKLGFYYKEHEILPPLPVG 391 (556)
T ss_pred ccCCCCeEEEEEecchHHHHHHHHHHhcc----------CcHHHHHHHHHhC----CCCCCCEEEeeccCcccCCCCCCc
Confidence 1 11111 2222233456777777631 1122233333222 111122231 332210
Q ss_pred ----cCCCCeEEEEE---------EcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHH
Q psy2902 359 ----SNGAPVHLNLK---------ITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKE 425 (945)
Q Consensus 359 ----~~~~~~~~~~~---------itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~ 425 (945)
..+.....++. .+|.++-+.+-+.+......+.+.+. .. ..++.|+++||+|+++.|.+++.+
T Consensus 392 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~RAvlEg~a~~~r~~~~~l~---~~-~~~~~i~~~GGgs~s~~w~Qi~AD 467 (556)
T PLN02669 392 FHRYILENFSGEALDGLVEEEVGEFDPPSEVRAIIEGQFLSMRAHAERFG---MP-VPPKRIIATGGASANQSILKLIAS 467 (556)
T ss_pred cchhhhccccCcccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHh---CC-CCCcEEEEEcChhcCHHHHHHHHH
Confidence 00111122222 57888776666555544444445553 22 347899999999999999999999
Q ss_pred HhCCCCCCCCCCCchhhhhHHHhhhh
Q psy2902 426 FFGKDPRRDINPDEAVAVGAAIQGSV 451 (945)
Q Consensus 426 ~fg~~~~~~~~p~~avA~GAa~~a~~ 451 (945)
.||.++.+...+ ++.|+|||+.|+.
T Consensus 468 Vlg~pV~~~~~~-ea~alGAA~~A~~ 492 (556)
T PLN02669 468 IFGCDVYTVQRP-DSASLGAALRAAH 492 (556)
T ss_pred HcCCCeEecCCC-CchHHHHHHHHHH
Confidence 999998765554 6889999999975
No 134
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=98.77 E-value=1.5e-06 Score=103.75 Aligned_cols=337 Identities=19% Similarity=0.224 Sum_probs=190.9
Q ss_pred EecHHHHHhhh----hCCCchhHHHHHhhCCCCCc--------HHHHhh----hcCCCeeEEecCCCceEEEE---C---
Q psy2902 118 LVGAPAKRQAV----TNPKNTIYAAKRLIGRKFNE--------KEVQKD----ISLMPYKIVKADNGDAWISV---R--- 175 (945)
Q Consensus 118 ~~G~~A~~~~~----~~~~~~i~~~k~llg~~~~~--------~~~~~~----~~~~~~~~~~~~~~~~~~~~---~--- 175 (945)
-+|.+|..... .....-+.+.||+||...-. ...... ....|+.-..++.|.+.+.+ .
T Consensus 331 RVG~EA~RLa~~r~GtEg~TGlSSPKRYLWDe~~~~q~WRFn~~~~~~~~eP~ata~p~~~liN~~G~~L~~l~~~~~r~ 410 (1002)
T PF07520_consen 331 RVGPEAARLASQRRGTEGSTGLSSPKRYLWDERPYEQGWRFNSAYVKSQNEPLATAAPFTNLINDDGQPLYQLDPEDERL 410 (1002)
T ss_pred eecHHHHHHHHHhcCCccccCCCCchhhccCCCccCCCcccCCCCCCCccCchhhhHHHHHhhcccCcchhhhcCccccC
Confidence 47888876442 34556688999999964211 110000 01112222223445554444 1
Q ss_pred ---CeeeChhhHHHHHHHHHHHHHHHHhCCC--------------CCcEEEEcCCCCCHHHHHHHHHHHHHc--------
Q psy2902 176 ---GKKLAPPQISAEVLRKMKKTAEDYLGGE--------------ITEAVITVPAYFNDAQRQATKDAGRIA-------- 230 (945)
Q Consensus 176 ---~~~~~~~ev~a~~L~~l~~~a~~~~~~~--------------~~~~VitVPa~~~~~qr~~l~~Aa~~A-------- 230 (945)
.-.|+-..++..+|..+..+|..+.+.. ...+++|+|......+|+.+++.++.|
T Consensus 411 pvf~p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~l 490 (1002)
T PF07520_consen 411 PVFSPHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKAL 490 (1002)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 1246667888888888888886665432 447899999999999999888887766
Q ss_pred CCc--------------------cce-ecchhHHHHHHhccC------------------CC---------CCCCceEEE
Q psy2902 231 GLE--------------------VKR-IINEPTAAALAFGLD------------------KS---------GKSDRNIVV 262 (945)
Q Consensus 231 Gl~--------------------~v~-li~Ep~AAAl~~~~~------------------~~---------~~~~~~vlV 262 (945)
|.. .++ =-+|.+|.-+-|... +. ..+.-+|.-
T Consensus 491 Gw~~~~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriAS 570 (1002)
T PF07520_consen 491 GWHPWDDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIAS 570 (1002)
T ss_pred CCCCCCCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEEE
Confidence 431 111 136666654444221 11 122345788
Q ss_pred EEeCCcceEEEEEEEEeecCCc-eEEEEEe---cCCCCCchHHHHHHHH-HHHHHHHHH----------------HhCCC
Q psy2902 263 YDLGGGTFDVSIIEIADVDGEK-QFEVLST---NGDTFLGGEDFDQRII-DYILDEFNK----------------INGID 321 (945)
Q Consensus 263 vD~GggT~dvsv~~~~~~~~~~-~~~vl~~---~~~~~lGG~~iD~~l~-~~l~~~~~~----------------~~~~~ 321 (945)
+|+||||||+.|-.+.-....+ ...+.-. .-+-.+.|++|=..++ .++...+.. .+|.+
T Consensus 571 IDIGGGTTDL~It~Y~ld~G~g~nv~I~P~q~FReGFkvAGDDiLldVI~~~VlPal~~aL~~aG~~~~~~ll~~LfG~d 650 (1002)
T PF07520_consen 571 IDIGGGTTDLMITQYRLDDGQGSNVKITPEQLFREGFKVAGDDILLDVIQRIVLPALQQALKKAGVADPRALLSRLFGGD 650 (1002)
T ss_pred EecCCCcceeeEEEEEeccCCcceeEECcchhhhhhcccccHHHHHHHHHHHhHHHHHHHHHHhcccCHHHHHHHHhCCc
Confidence 9999999999998875221222 2222111 1234568888766654 344333322 12222
Q ss_pred CccCHH--------------HHHHHHHHHHHHHHHhcCCcceeeee--------------ceee---------ccCCCCe
Q psy2902 322 LRKDSI--------------ALQRIKASAERAKIELSSSKQTEINE--------------PYIA---------MSNGAPV 364 (945)
Q Consensus 322 ~~~~~~--------------~~~~L~~~~e~~K~~Ls~~~~~~i~i--------------~~~~---------~~~~~~~ 364 (945)
-..... ....++.++|+.-..-. .......+ .++. .......
T Consensus 651 g~~~~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~~~~-~~~~~~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~~~~Fdil 729 (1002)
T PF07520_consen 651 GQSDQDRVLRQQFTLQVFIPIGLAILKAYENYDPLDP-SAEIDATFGELLEREPPTAAVLDYINEEVRRLPAGAPDFDIL 729 (1002)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc-CccccccHHHhcCCcCCcHHHHHHHHHHHhhcCCCCCCccee
Confidence 100000 01234444444321000 00000000 0000 0011123
Q ss_pred EEEEEEcHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCC--------
Q psy2902 365 HLNLKITRAKLELLVD---ELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRR-------- 433 (945)
Q Consensus 365 ~~~~~itr~~~e~~~~---~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~-------- 433 (945)
++.+.|+.+++...+. ..+...+..+-+++...++ |.++|+|--|++|.|+.+++.....++.+
T Consensus 730 dv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y~C-----DVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y~ 804 (1002)
T PF07520_consen 730 DVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHHYDC-----DVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGYR 804 (1002)
T ss_pred cceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHHhCC-----CEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCee
Confidence 6678999999998875 6777777777777776554 78999999999999999999998655432
Q ss_pred ------------CCCCCchhhhhHHHhhhhccCCCCceE
Q psy2902 434 ------------DINPDEAVAVGAAIQGSVLSGDRKDLL 460 (945)
Q Consensus 434 ------------~~~p~~avA~GAa~~a~~~~~~~~~~~ 460 (945)
..||.+.||.||.+.+.......+++.
T Consensus 805 tg~WYPF~~~~rI~dPKTTaaVGAmLc~La~~lrL~nF~ 843 (1002)
T PF07520_consen 805 TGNWYPFNDQGRIDDPKTTAAVGAMLCLLAEGLRLPNFY 843 (1002)
T ss_pred ecccccCCCCCcCCCchHHHHHHHHHHHHhccCCCCCce
Confidence 348999999999776643332444443
No 135
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=98.72 E-value=7.2e-09 Score=88.66 Aligned_cols=51 Identities=29% Similarity=0.613 Sum_probs=41.0
Q ss_pred eeEEEEeecCCCCCeEEEEcCCCCCCCCCC-CCccEEEEEEEecCCcccccC
Q psy2902 785 KTLEVKIPAGIENNMRIRSTGNGEPGLNGG-SNGNLYIEIHIKPHKVFERDG 835 (945)
Q Consensus 785 ~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~-~~Gdl~i~i~v~~~~~~~r~g 835 (945)
++++|+||+|+++|++++++|+|+|...++ .+||||++|+|..|..++.++
T Consensus 27 ~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~~q 78 (81)
T PF01556_consen 27 KTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSPEQ 78 (81)
T ss_dssp -EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSHHH
T ss_pred CEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHH
Confidence 478999999999999999999999877655 799999999999999887654
No 136
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=98.64 E-value=2.2e-06 Score=96.93 Aligned_cols=191 Identities=15% Similarity=0.112 Sum_probs=119.4
Q ss_pred EEEEcCccceEEEEEeCCceEEEe-CCCCCcC-ccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcHHH
Q psy2902 74 IGIDLGTTNSCVSIIEGSQPKVIE-NSEGART-TPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEKEV 151 (945)
Q Consensus 74 iGID~GTt~s~va~~~~~~~~ii~-~~~g~~~-~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~~~ 151 (945)
|-||.||..+++++..+..|..+. +..+.+. ..++..-...+...+|+++...... +
T Consensus 9 iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~-~-------------------- 67 (444)
T COG5277 9 IVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDN-S-------------------- 67 (444)
T ss_pred EEEeCCCceEEeeecCCCCceeecccccccccccccccccccccccccCchhhhccCC-c--------------------
Confidence 889999999999999888776654 2222221 2222211112234445444321100 0
Q ss_pred HhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhC--CCCCcEEEEcCCCCCHHHHHHHHH-HHH
Q psy2902 152 QKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLG--GEITEAVITVPAYFNDAQRQATKD-AGR 228 (945)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~--~~~~~~VitVPa~~~~~qr~~l~~-Aa~ 228 (945)
............+...+....+++++...- .++. ..-..+++|-|..+....|+.+.+ +.+
T Consensus 68 ---------------~~~~~~p~~~g~i~~W~~~e~~w~~~~~~~-~~~~~~~~~~pllltep~~n~~~~re~~~e~~fE 131 (444)
T COG5277 68 ---------------LLELRYPIENGIILNWDAMEQIWDYTFFNK-GDLLPSPEEHPLLLTEPPLNPPSNREKITELLFE 131 (444)
T ss_pred ---------------cceeecccccCccCCcHHHHHHHHHhhcch-hhccCCCcCCceEEeccCCCcHHHHHHHHHHHHH
Confidence 001112223344555666666777766653 1222 223468999999999999987754 467
Q ss_pred HcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHH
Q psy2902 229 IAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIID 308 (945)
Q Consensus 229 ~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~ 308 (945)
...++.+.+..++.+++++.+... .+.+|+|+|.+.++++-+--... +.....-..+||.+++..|.+
T Consensus 132 ~~~vp~~~~~~~~~l~~ya~g~~~-----~~g~ViD~G~~~t~v~PV~DG~~-------l~~a~~ri~~gG~~it~~l~~ 199 (444)
T COG5277 132 TLNVPALYLAIQAVLSLYASGSSD-----ETGLVIDSGDSVTHVIPVVDGIV-------LPKAVKRIDIGGRDITDYLKK 199 (444)
T ss_pred hcCCcceEeeHHHHHHHHhcCCCC-----CceEEEEcCCCceeeEeeecccc-------ccccceeeecCcHHHHHHHHH
Confidence 778888899999999988876543 46899999999999997642111 111122245799999999988
Q ss_pred HHHHH
Q psy2902 309 YILDE 313 (945)
Q Consensus 309 ~l~~~ 313 (945)
.|...
T Consensus 200 lL~~~ 204 (444)
T COG5277 200 LLREK 204 (444)
T ss_pred HHhhc
Confidence 88774
No 137
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=98.63 E-value=1.1e-07 Score=110.47 Aligned_cols=89 Identities=15% Similarity=0.166 Sum_probs=72.5
Q ss_pred EEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhh
Q psy2902 365 HLNLKITRAKLELLVDELITRTIEPCRIAIKDA-GIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAV 443 (945)
Q Consensus 365 ~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~-~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~ 443 (945)
.++...+|.++.+.+-+.+......+.+.|++. +. .++.|.++||++++++|.|++++.+|.++... +.++.|+
T Consensus 351 Gl~~~~~~~~l~RAv~Egva~~~r~~~e~l~~~~~~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~--~~e~~a~ 425 (454)
T TIGR02627 351 NQPIPESDAELARCIFDSLALLYRQVLLELAELRGK---PISQLHIVGGGSQNAFLNQLCADACGIRVIAG--PVEASTL 425 (454)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---CcCEEEEECChhhhHHHHHHHHHHhCCceEcC--CchHHHH
Confidence 456677999999888888877777777777764 43 36899999999999999999999999999643 3678999
Q ss_pred hHHHhhhhccCCCCc
Q psy2902 444 GAAIQGSVLSGDRKD 458 (945)
Q Consensus 444 GAa~~a~~~~~~~~~ 458 (945)
|||+.|+...|..++
T Consensus 426 GaA~~a~~~~G~~~~ 440 (454)
T TIGR02627 426 GNIGVQLMALDEIND 440 (454)
T ss_pred HHHHHHHHhcCCcCC
Confidence 999999987775443
No 138
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=98.61 E-value=6.1e-06 Score=87.03 Aligned_cols=70 Identities=20% Similarity=0.399 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCC-CCCCCCchhhhhHHHhhhh
Q psy2902 378 LVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPR-RDINPDEAVAVGAAIQGSV 451 (945)
Q Consensus 378 ~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~-~~~~p~~avA~GAa~~a~~ 451 (945)
++..+...+...+...++..++. ..|+|+||.++.+.+.+.+++.++.++. .+.+|..+.|+|||++|..
T Consensus 218 I~aGl~~sia~rv~~~~~~~~i~----~~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 218 VIAAYCQAMAERVVSLLERIGVE----EGFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred HHHHHHHHHHHHHHHHhcccCCC----CCEEEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHHHHHHHH
Confidence 34444444444444455544433 4799999999999999999999998887 5778999999999999964
No 139
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=98.58 E-value=8.1e-07 Score=98.79 Aligned_cols=227 Identities=20% Similarity=0.205 Sum_probs=136.5
Q ss_pred HHHHHHHHHcCCcc----ceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeec---CCceEEEEEecC
Q psy2902 221 QATKDAGRIAGLEV----KRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVD---GEKQFEVLSTNG 293 (945)
Q Consensus 221 ~~l~~Aa~~AGl~~----v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~---~~~~~~vl~~~~ 293 (945)
..+.++|+..||+. ...+-+.-|.+++.+... ..-|++=+|.+|+++.+-.-.... .+.....+..+.
T Consensus 232 ~Lt~e~A~~lGL~~~~~Vs~g~IDAhag~~Gv~~~~-----~~~l~~I~GTStC~m~~s~~~~~v~GvwGpy~~ai~Pg~ 306 (544)
T COG1069 232 GLTPEAAQELGLPEGTVVSAGIIDAHAGAVGVGGAQ-----PGSLAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVLPGL 306 (544)
T ss_pred ccCHHHHHHhCCCCCcEEeccceeccccccccccCC-----CCeEEEEeccceEEEEecCCceecCccccccccccCcch
Confidence 56678889999853 334455556666554332 223444578888888775432110 112222233333
Q ss_pred CCCCchHHHHHHHHHHHHHHHHH---------HhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccC----
Q psy2902 294 DTFLGGEDFDQRIIDYILDEFNK---------INGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSN---- 360 (945)
Q Consensus 294 ~~~lGG~~iD~~l~~~l~~~~~~---------~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~---- 360 (945)
-..-||..-...+++||.+...- +.+.++ .......+...+++.+...+. ....+.++.+..+.
T Consensus 307 ~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~l-~~~l~~l~~f~GNRsP~a 383 (544)
T COG1069 307 WLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEI--YESLAQRLELLTEAAAAIPPL-ASGLHVLDWFNGNRSPLA 383 (544)
T ss_pred hhhcccchhhhHHHHHHHHhCCcccchhhccchhhhHH--HHHHHHHHHHHHhhHhccCcc-cCCcEecccccCCcCCCC
Confidence 33458888889999999877421 111000 011223333334444433322 22233444333211
Q ss_pred -----CCCeEEEEEEcHHHHHHHHHHHHHHH---HHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCC
Q psy2902 361 -----GAPVHLNLKITRAKLELLVDELITRT---IEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPR 432 (945)
Q Consensus 361 -----~~~~~~~~~itr~~~e~~~~~~i~~i---~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~ 432 (945)
+...++++..+.+.+-.+....++.+ .+.|.+++++.++. |+.|+++||-.+.|.+.+.+.+..|.++.
T Consensus 384 Dp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g~~---Id~l~~sGG~~KN~llmql~aDvtg~~v~ 460 (544)
T COG1069 384 DPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFEDQGIA---IDTLFASGGIRKNPLLMQLYADVTGRPVV 460 (544)
T ss_pred CccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCe---eeEEEecCCcccCHHHHHHHHHhcCCeEE
Confidence 11235667777886666666555544 45666777776664 79999999999999999999999999988
Q ss_pred CCCCCCchhhhhHHHhhhhccCCCCce
Q psy2902 433 RDINPDEAVAVGAAIQGSVLSGDRKDL 459 (945)
Q Consensus 433 ~~~~p~~avA~GAa~~a~~~~~~~~~~ 459 (945)
.+ ..++++++|+|+.|+...+..+++
T Consensus 461 i~-~s~~a~llGsAm~~avAag~~~dl 486 (544)
T COG1069 461 IP-ASDQAVLLGAAMFAAVAAGVHPDL 486 (544)
T ss_pred ee-cccchhhhHHHHHHHHHhccCcch
Confidence 66 568899999999999887754443
No 140
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=98.45 E-value=6.1e-06 Score=87.82 Aligned_cols=73 Identities=22% Similarity=0.249 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhh
Q psy2902 375 LELLVDELITRTIEPCRI-AIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSV 451 (945)
Q Consensus 375 ~e~~~~~~i~~i~~~i~~-~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~ 451 (945)
.|+++..+...+.+-+.. +++...+. +.|+|+||.+....+.+++++.++.++.++.+|...-|.|||++|..
T Consensus 317 ~EdI~AGl~~Sv~~~v~~~~~~~~~i~----~~iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 317 PEDILAGLAYSVAENVAEKVIKRVDIE----EPIVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCC----CCEEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHHHHHHHhh
Confidence 456666666665554444 55554443 23999999999999999999999999999999999999999999853
No 141
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=98.43 E-value=4e-07 Score=80.76 Aligned_cols=59 Identities=36% Similarity=0.747 Sum_probs=49.5
Q ss_pred cccCCCCCccccccCcCcccCCCCCCCceEeEee-ceeeeeecCCCCCCceEEeecCCcccCCCceEee
Q psy2902 716 WDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQ-GFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKR 783 (945)
Q Consensus 716 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~-~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~ 783 (945)
...|..|+|+|.. +|+.|+|+|.+.... ++++.+.+|+.|+|.|.+ +|..|.|.|...+
T Consensus 41 ~v~C~~C~GsG~~------~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~---~C~~C~G~G~~~~ 100 (111)
T PLN03165 41 TQPCFPCSGTGAQ------VCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL---TCTTCQGSGIQPR 100 (111)
T ss_pred CCCCCCCCCCCCc------CCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee---eCCCCCCCEEEee
Confidence 4789999999983 899999999986655 446788999999999974 4999999886554
No 142
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=98.43 E-value=1.1e-05 Score=88.51 Aligned_cols=70 Identities=19% Similarity=0.258 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHH-HHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhh
Q psy2902 377 LLVDELITRTIEPCR-IAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGS 450 (945)
Q Consensus 377 ~~~~~~i~~i~~~i~-~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~ 450 (945)
+++..+...+.+.+. .+++..++. +.|+++||.++.+.+.+.+++.++.++..+.+|..+.|+|||++|.
T Consensus 332 DIaAGl~~SIa~rv~~~l~~~~~i~----~~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 332 DVAAAACHSVAEQVYEQQLQEIDVR----EPVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCC----CcEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHHHHHHHHHhc
Confidence 334444444444443 234444333 4699999999999999999999999999999999999999999985
No 143
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=98.41 E-value=2.9e-06 Score=91.41 Aligned_cols=69 Identities=16% Similarity=0.191 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHc-CCCCCCCCcEEEecCccccHHHHHHHHHHhC-----CCCCCCCCCCchhhhhHHHhh
Q psy2902 377 LLVDELITRTIEPCRIAIKDA-GIKVSDINDIILVGGMTRMPKVQEKVKEFFG-----KDPRRDINPDEAVAVGAAIQG 449 (945)
Q Consensus 377 ~~~~~~i~~i~~~i~~~l~~~-~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg-----~~~~~~~~p~~avA~GAa~~a 449 (945)
+++..+...+..-+...+.+. ++ -..|+++||.++.+.+.+.|++.++ .++..+.+|..+.|+|||++|
T Consensus 358 DIaAGL~~SIA~Rv~s~l~r~~~i----~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 358 DILAGLHRAIILRAISIISRSGGI----TDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCC----CCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 333444444444444444443 22 2579999999999999999999994 567778999999999999986
No 144
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=98.40 E-value=2.3e-06 Score=94.76 Aligned_cols=82 Identities=17% Similarity=0.293 Sum_probs=55.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHHH------------cCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEE
Q psy2902 206 EAVITVPAYFNDAQRQATKDAGRI------------AGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVS 273 (945)
Q Consensus 206 ~~VitVPa~~~~~qr~~l~~Aa~~------------AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvs 273 (945)
-.+||.++. .++.++++++. ||++...++. |.|++.+.... +.+..++++|+||||++++
T Consensus 90 ahIITg~~~----~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLse---Eke~gVa~IDIGgGTT~ia 161 (475)
T PRK10719 90 AVIITGETA----RKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSE---ERNTRVLNIDIGGGTANYA 161 (475)
T ss_pred EEEEEechh----HHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhh---hccCceEEEEeCCCceEEE
Confidence 356776654 44555555554 6777666666 99988877743 5678899999999999999
Q ss_pred EEEEEeecCCceEEEEEecCCCCCchHHHHH
Q psy2902 274 IIEIADVDGEKQFEVLSTNGDTFLGGEDFDQ 304 (945)
Q Consensus 274 v~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~ 304 (945)
++.- +.+. ......+||+.++.
T Consensus 162 Vf~~------G~l~---~T~~l~vGG~~IT~ 183 (475)
T PRK10719 162 LFDA------GKVI---DTACLNVGGRLIET 183 (475)
T ss_pred EEEC------CEEE---EEEEEecccceEEE
Confidence 9974 2211 12234568887764
No 145
>KOG0714|consensus
Probab=98.34 E-value=4.5e-06 Score=91.74 Aligned_cols=104 Identities=28% Similarity=0.484 Sum_probs=89.8
Q ss_pred eeeeEEEEeecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCCceeE--EeeCHHHHhcCCeEEEecC
Q psy2902 783 RNKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYE--MPISFSTAALGGEIEAPTL 860 (945)
Q Consensus 783 ~~~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~--~~i~l~eal~G~~~~v~~l 860 (945)
....+.+.+++++..|+.+....+|...+. ..+-++.+.+..++|..|.+.+++|... ..+++.+|++|....++++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~~~~~~~~~~~~ 276 (306)
T KOG0714|consen 198 RSRYLSISIKPGWKEGTKITFPEEGDEEPG-ILPADIEFVVDEKPHPLFSRDGNDLSYSSGYEISLKEALLGVTVFVPTL 276 (306)
T ss_pred ccceeEEeccCCcccccceeccccccccCC-cCcceeEEEEecCCcccccCCCccceecccceeehhhhhcCcceeeecc
Confidence 445678999999999999999999987554 4567888889999999999999999999 9999999999999999999
Q ss_pred CCeEEE-EeC-CCCCCCcEEEECCCCcCC
Q psy2902 861 NGKAFF-VIP-EGTQSGKIFRLRGKGIKN 887 (945)
Q Consensus 861 ~g~~~~-~i~-~~~~~g~~~~i~g~G~~~ 887 (945)
+|...- .+. ....++...+++++|+|.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (306)
T KOG0714|consen 277 DGRSYSLSINKDLIEPGEEDVIPGEGLPC 305 (306)
T ss_pred cCccccCcccccccCCCceeeecCCCCCC
Confidence 986653 333 567999999999999985
No 146
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=98.27 E-value=5.3e-05 Score=78.97 Aligned_cols=70 Identities=17% Similarity=0.217 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCC-C----CCCCCCCCchhhhhHHHhh
Q psy2902 377 LLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK-D----PRRDINPDEAVAVGAAIQG 449 (945)
Q Consensus 377 ~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~-~----~~~~~~p~~avA~GAa~~a 449 (945)
+++..+...+...+...++..+.. -+.|+|+||.++.+.+.+.|++.++. + +..+.+|..+.|+|||++|
T Consensus 188 dI~aGl~~sia~r~~~~~~~~~~~---~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 188 NILKGIHESMADRLAKLLKSLGAL---DGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCC---CCcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 344444455544444455544321 13599999999999999999998842 2 4446688899999999975
No 147
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=98.24 E-value=3.4e-05 Score=78.50 Aligned_cols=196 Identities=20% Similarity=0.226 Sum_probs=108.8
Q ss_pred HHHHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHH
Q psy2902 225 DAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQ 304 (945)
Q Consensus 225 ~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~ 304 (945)
+..+..|.++...-.|+++|++...... ..+..+.++|+||||||.+++. .++.+.-+.-.| .|+.++.
T Consensus 103 ~l~~~lgv~V~igGvEAemAi~GALTTP--Gt~~PlaIlDmG~GSTDAsii~-----~~g~v~~iHlAG----AG~mVTm 171 (332)
T PF08841_consen 103 ELEEELGVPVEIGGVEAEMAILGALTTP--GTDKPLAILDMGGGSTDASIIN-----RDGEVTAIHLAG----AGNMVTM 171 (332)
T ss_dssp HHHHHHTSEEEEECEHHHHHHHHHTTST--T--SSEEEEEE-SSEEEEEEE------TTS-EEEEEEE-----SHHHHHH
T ss_pred HHHHHHCCceEEccccHHHHHhcccCCC--CCCCCeEEEecCCCcccHHHhC-----CCCcEEEEEecC----CchhhHH
Confidence 3445678888888899999999987766 4566789999999999999997 567777666666 6777776
Q ss_pred HHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCC-----------cceeeeeceeeccC---------CCCe
Q psy2902 305 RIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSS-----------KQTEINEPYIAMSN---------GAPV 364 (945)
Q Consensus 305 ~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~-----------~~~~i~i~~~~~~~---------~~~~ 364 (945)
.+... .+++. ...||.+|+---.. ....++-..+.... ++..
T Consensus 172 lI~sE--------LGl~d----------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lv 233 (332)
T PF08841_consen 172 LINSE--------LGLED----------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLV 233 (332)
T ss_dssp HHHHH--------CT-S-----------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEE
T ss_pred HHHHh--------hCCCC----------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCcee
Confidence 65422 22210 34566666532111 01111111111110 1111
Q ss_pred EEEEEEcHHHHHHHHHHHHHHH-HHHHHHHHHHcCC--CCCCCCcEEEecCccccHHHHHHHHHHhCC--------CCCC
Q psy2902 365 HLNLKITRAKLELLVDELITRT-IEPCRIAIKDAGI--KVSDINDIILVGGMTRMPKVQEKVKEFFGK--------DPRR 433 (945)
Q Consensus 365 ~~~~~itr~~~e~~~~~~i~~i-~~~i~~~l~~~~~--~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~--------~~~~ 433 (945)
.+...++-+++..+=...-++. ..-..++|++... ...+|+.|+|+||++.---|.+++.+.+.. ++.-
T Consensus 234 Pi~~~~~lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG 313 (332)
T PF08841_consen 234 PIPGDLSLEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRG 313 (332)
T ss_dssp EESSTS-HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGG
T ss_pred ecCCCccHHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeecccccc
Confidence 1222233333333322222222 1223345554332 234789999999999998899999888732 2223
Q ss_pred CCCCCchhhhhHHHhh
Q psy2902 434 DINPDEAVAVGAAIQG 449 (945)
Q Consensus 434 ~~~p~~avA~GAa~~a 449 (945)
..-|..|||.|.++.-
T Consensus 314 ~eGPRNAVATGLvlsy 329 (332)
T PF08841_consen 314 VEGPRNAVATGLVLSY 329 (332)
T ss_dssp TSTTSTHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHhh
Confidence 4568899999998643
No 148
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=98.18 E-value=3.2e-05 Score=85.13 Aligned_cols=196 Identities=18% Similarity=0.194 Sum_probs=110.5
Q ss_pred CccceecchhHHHHHHhccCCCCC-----CCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCC-----CchHH
Q psy2902 232 LEVKRIINEPTAAALAFGLDKSGK-----SDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTF-----LGGED 301 (945)
Q Consensus 232 l~~v~li~Ep~AAAl~~~~~~~~~-----~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~-----lGG~~ 301 (945)
+++..++-+..||.++-+-..+-. ....++....|.-- ....++.+..++..-+.. -|+-.
T Consensus 237 vPI~g~~GDQQAALfGq~c~~pG~~K~TYGTG~F~l~ntG~~~---------~~S~~~LLtTIa~~l~gk~~YALEGsif 307 (499)
T COG0554 237 VPITGVAGDQQAALFGQGCFEPGMAKNTYGTGCFLLMNTGEKP---------VRSENGLLTTIAWGLDGKVTYALEGSIF 307 (499)
T ss_pred eeeccccchhHHHHhhcccCCcCccccccccceeeeeccCCcc---------ccCCCCceeEEEeccCCeEEEEEeccee
Confidence 456678888999988765544311 12233444443320 001222333333221100 14445
Q ss_pred HHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceee---------ccCCCCeEEEEEEcH
Q psy2902 302 FDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIA---------MSNGAPVHLNLKITR 372 (945)
Q Consensus 302 iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~---------~~~~~~~~~~~~itr 372 (945)
+..+-++||.+.++-.. +.. .....|+++ .. +.....+|.+. ...+...+++-..++
T Consensus 308 ~aGaavqWLrd~L~~i~------~a~---~~e~~A~~~----~~-~~gVy~VPAFtGLgAPyWd~~aRGai~Gltrgt~~ 373 (499)
T COG0554 308 VAGAAVQWLRDGLGLID------DAS---DSEELAESV----ED-NGGVYFVPAFTGLGAPYWDSDARGAIFGLTRGTTK 373 (499)
T ss_pred ehhhHHHHHHHhcCccC------chh---HHHHHHhcc----CC-CCceEEEcccccCCCCCcCcccceeEEeeCCCCCH
Confidence 55566789988765211 111 111122222 22 23445555543 111223455556677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhh
Q psy2902 373 AKLELLVDELITRTIEPCRIAIK-DAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSV 451 (945)
Q Consensus 373 ~~~e~~~~~~i~~i~~~i~~~l~-~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~ 451 (945)
++|-+..-+.+..-..-|.++|+ +++. .++.+-+=||.+++.++.+.+++.+|.++.++.+ .|..|+|||+.|..
T Consensus 374 ~hi~RA~LEsiayQ~~dv~~aM~~d~~~---~~~~LrvDGG~s~n~~lmQfqADilg~~V~Rp~~-~EtTAlGaA~lAGl 449 (499)
T COG0554 374 AHIARATLESIAYQTRDVLEAMEKDSGI---KLTRLRVDGGASRNNFLMQFQADILGVPVERPVV-LETTALGAAYLAGL 449 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC---CceeEEEcCccccchhHHHHHHHHhCCeeecccc-chhhHHHHHHHHhh
Confidence 77776655544443333444443 3443 4788999999999999999999999999987664 67899999999988
Q ss_pred ccC
Q psy2902 452 LSG 454 (945)
Q Consensus 452 ~~~ 454 (945)
..|
T Consensus 450 a~G 452 (499)
T COG0554 450 AVG 452 (499)
T ss_pred hhC
Confidence 776
No 149
>PRK13317 pantothenate kinase; Provisional
Probab=98.18 E-value=0.00022 Score=76.12 Aligned_cols=47 Identities=26% Similarity=0.369 Sum_probs=42.2
Q ss_pred CCcEEEec-CccccHHHHHHHHHHh---CCCCCCCCCCCchhhhhHHHhhh
Q psy2902 404 INDIILVG-GMTRMPKVQEKVKEFF---GKDPRRDINPDEAVAVGAAIQGS 450 (945)
Q Consensus 404 i~~ViLvG-G~s~~p~v~~~l~~~f---g~~~~~~~~p~~avA~GAa~~a~ 450 (945)
++.|+++| |.++.|.+++.+.+.+ +.++..+.+|..+.|+|||++|.
T Consensus 223 ~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 223 IENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 57899999 7999999999999988 57777889999999999999875
No 150
>KOG2517|consensus
Probab=98.17 E-value=6.1e-05 Score=84.93 Aligned_cols=89 Identities=21% Similarity=0.298 Sum_probs=66.3
Q ss_pred eEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhh
Q psy2902 364 VHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAV 443 (945)
Q Consensus 364 ~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~ 443 (945)
..++...+.+++-.++-+.+..=...|.++++..+. ..|+.+.+.||.|+.|.+.+.+++.+|.++..+.+++. ++.
T Consensus 377 ~Gls~~ts~~hia~A~leai~fqtr~Il~am~~~~~--~~i~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~~e~-~~~ 453 (516)
T KOG2517|consen 377 IGLSQDTSKEHLARAALEAIAFQTREILEAMERDGG--HPISTLRVCGGLSKNPLLMQLQADILGLPVVRPQDVEA-VAL 453 (516)
T ss_pred EEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCcceeeeccccccCHHHHHHHHHHhCCccccccchhH-HHH
Confidence 345556667776654444443333444455554432 45788999999999999999999999999998888777 999
Q ss_pred hHHHhhhhccCC
Q psy2902 444 GAAIQGSVLSGD 455 (945)
Q Consensus 444 GAa~~a~~~~~~ 455 (945)
|||+.|+..++.
T Consensus 454 GaA~l~~~a~~~ 465 (516)
T KOG2517|consen 454 GAAMLAGAASGK 465 (516)
T ss_pred HHHHHHHhhcCC
Confidence 999999988874
No 151
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=98.12 E-value=2e-05 Score=91.75 Aligned_cols=82 Identities=12% Similarity=0.077 Sum_probs=67.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhh
Q psy2902 371 TRAKLELLVDELITRTIEPCRIAIKDA-GIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQG 449 (945)
Q Consensus 371 tr~~~e~~~~~~i~~i~~~i~~~l~~~-~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a 449 (945)
+|.+|-+++-+.+......+.+.|++. +. .++.|.++||+++++.|.|++++.+|.++.... .++.|+|||+.|
T Consensus 345 ~~~~l~RAvlEgva~~~r~~l~~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~--~ea~alGaa~~a 419 (471)
T PRK10640 345 SDAELARCIFDSLALLYADVLHELAQLRGE---PFSQLHIVGGGCQNALLNQLCADACGIRVIAGP--VEASTLGNIGIQ 419 (471)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CcceEEEECChhhhHHHHHHHHHHhCCCeeeCC--hhHHHHHHHHHH
Confidence 888998888888877777777777764 43 368899999999999999999999999996443 378999999999
Q ss_pred hhccCCCC
Q psy2902 450 SVLSGDRK 457 (945)
Q Consensus 450 ~~~~~~~~ 457 (945)
+...|..+
T Consensus 420 ~~a~G~~~ 427 (471)
T PRK10640 420 LMTLDELN 427 (471)
T ss_pred HHHcCCcC
Confidence 98777443
No 152
>KOG0676|consensus
Probab=98.06 E-value=5.9e-05 Score=82.33 Aligned_cols=116 Identities=15% Similarity=0.087 Sum_probs=69.2
Q ss_pred eChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHH-HHcCCccceecchhHHHHHHhccCCCCCCC
Q psy2902 179 LAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAG-RIAGLEVKRIINEPTAAALAFGLDKSGKSD 257 (945)
Q Consensus 179 ~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa-~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~ 257 (945)
++..+-+..+..++...-.....+ ...+++|-|..|...-|+.|.+.. +..+.+.+.+ .. .|..++++.
T Consensus 75 v~~wd~me~iw~~if~~~L~~~Pe-e~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yv-a~-qavlya~g~------- 144 (372)
T KOG0676|consen 75 VTDWDDMEKIWHHLFYSELLVAPE-EHPVLLTEPPLNPKANREKLTQIMFETFNVPALYV-AI-QAVLYASGR------- 144 (372)
T ss_pred ccchHHHHHHHHHHHHHhhccCcc-cCceEeecCCCCchHhHHHHHHHhhhhcCccHhHH-HH-HHHHHHcCC-------
Confidence 444444466777776322222222 357899999999999999887764 4445554444 22 333333333
Q ss_pred ceEEEEEeCCcceEEE-EEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHH
Q psy2902 258 RNIVVYDLGGGTFDVS-IIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILD 312 (945)
Q Consensus 258 ~~vlVvD~GggT~dvs-v~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~ 312 (945)
.+=+|+|+|.|-+++. +++- +.+...-....+||.++++.+...|.+
T Consensus 145 ttG~VvD~G~gvt~~vPI~eG--------~~lp~ai~~ldl~G~dlt~~l~~~L~~ 192 (372)
T KOG0676|consen 145 TTGLVVDSGDGVTHVVPIYEG--------YALPHAILRLDLAGRDLTDYLLKQLRK 192 (372)
T ss_pred eeEEEEEcCCCceeeeecccc--------cccchhhheecccchhhHHHHHHHHHh
Confidence 3458999999966444 4431 112222334567999999877766665
No 153
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=98.02 E-value=2.1e-06 Score=69.95 Aligned_cols=46 Identities=28% Similarity=0.745 Sum_probs=34.5
Q ss_pred eccccccCCCCCccccccCc---------CcccCCCCCCCceEeEeeceeee-eecCCCCCCce
Q psy2902 712 RVPSWDICKSCYGNGAKKGT---------SPISCFTCSGQGQVRMQQGFFSI-QQTCPKCQGAG 765 (945)
Q Consensus 712 ~~~~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~~-~~~C~~C~G~g 765 (945)
......+|+.|+|+|..... .+++|+.|+|+|++ + .++|+.|+|.|
T Consensus 11 ~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~--------i~~~~C~~C~G~g 66 (66)
T PF00684_consen 11 PGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKI--------IEKDPCKTCKGSG 66 (66)
T ss_dssp STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE---------TSSB-SSSTTSS
T ss_pred CCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeE--------ECCCCCCCCCCcC
Confidence 34456789999999997542 57899999999999 6 89999999986
No 154
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=97.97 E-value=0.0024 Score=72.21 Aligned_cols=92 Identities=23% Similarity=0.236 Sum_probs=64.1
Q ss_pred eEEEEEEcHHHHHHHHHHH---HHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCC-------
Q psy2902 364 VHLNLKITRAKLELLVDEL---ITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRR------- 433 (945)
Q Consensus 364 ~~~~~~itr~~~e~~~~~~---i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~------- 433 (945)
.++.+.|.-.++++.+-.. +....+.+-++++.. +-|.++|+|--||.|.++..++.....++.+
T Consensus 741 ~d~pl~i~~~ql~e~~ls~~~~i~~~f~al~EaIn~y-----~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Y 815 (1014)
T COG4457 741 LDVPLAIDLSQLHECFLSGDYDITGVFDALCEAINHY-----DCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDY 815 (1014)
T ss_pred eccceeccHHHHHHHHhhCcccccchHHHHHHHHhhh-----cccEEEEcCCcccCccHHHHHhhcCCCCCCceEeccce
Confidence 3556778888887766554 455555555555543 3478999999999999999999887554422
Q ss_pred -------------CCCCCchhhhhHHHhhhhccCCCCceE
Q psy2902 434 -------------DINPDEAVAVGAAIQGSVLSGDRKDLL 460 (945)
Q Consensus 434 -------------~~~p~~avA~GAa~~a~~~~~~~~~~~ 460 (945)
..||...+|.||-+.+..+.-..+++.
T Consensus 816 rvg~WYPF~k~grIddPKtTAaVGAMLC~Lsl~~rl~nF~ 855 (1014)
T COG4457 816 RVGTWYPFRKQGRIDDPKTTAAVGAMLCALSLELRLPNFY 855 (1014)
T ss_pred eccceecccccCcCCCcchHHHHHHHHHHHHhhccCccee
Confidence 358999999999877765444444443
No 155
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=97.80 E-value=6.3e-05 Score=77.01 Aligned_cols=83 Identities=29% Similarity=0.340 Sum_probs=64.0
Q ss_pred EEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhh
Q psy2902 365 HLNLKITRAKLELLVDELITRTIEPCRIAIKDA-GIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAV 443 (945)
Q Consensus 365 ~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~-~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~ 443 (945)
+++...++.++-+.+-+.+......+.+.|++. +.. ++.|+++||.++++.|.+++.+.|+.++.+..+ .++.|+
T Consensus 113 gl~~~~~~~~~~rAv~Egia~~~~~~~~~l~~~~~~~---~~~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~-~e~~a~ 188 (198)
T PF02782_consen 113 GLSSDTTRADLARAVLEGIAFSLRQILEELEELTGIP---IRRIRVSGGGAKNPLWMQILADVLGRPVVRPEV-EEASAL 188 (198)
T ss_dssp EEETTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC---ESEEEEESGGGGSHHHHHHHHHHHTSEEEEESS-STHHHH
T ss_pred cCCcccCHHHHHHHHHHhHHHHHHHhhhhcccccccc---ceeeEeccccccChHHHHHHHHHhCCceEeCCC-CchHHH
Confidence 444455677777766666555555555666554 554 689999999999999999999999998875544 899999
Q ss_pred hHHHhhhh
Q psy2902 444 GAAIQGSV 451 (945)
Q Consensus 444 GAa~~a~~ 451 (945)
|||+.|+.
T Consensus 189 GaA~~A~~ 196 (198)
T PF02782_consen 189 GAALLAAV 196 (198)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999974
No 156
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.55 E-value=5.4e-05 Score=84.07 Aligned_cols=14 Identities=21% Similarity=0.354 Sum_probs=9.9
Q ss_pred CCCCCcEEEECCCC
Q psy2902 871 GTQSGKIFRLRGKG 884 (945)
Q Consensus 871 ~~~~g~~~~i~g~G 884 (945)
.++.|.++++-|+=
T Consensus 258 ~IevGdiV~ViG~V 271 (715)
T COG1107 258 EIEVGDIVEVIGEV 271 (715)
T ss_pred CCCCCceEEEEEEE
Confidence 46777777777763
No 157
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=97.48 E-value=0.00013 Score=71.61 Aligned_cols=34 Identities=24% Similarity=0.433 Sum_probs=25.2
Q ss_pred cCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEc
Q psy2902 770 HPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRST 804 (945)
Q Consensus 770 ~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~ 804 (945)
++|..|.|.|.+.......+++ .|+.+|++|++.
T Consensus 116 ~~C~~C~G~G~v~~~~~~~~k~-~g~~~g~~it~~ 149 (186)
T TIGR02642 116 RECDTCAGTGRFRPTVEDLLKS-FGVDSGAAIVLK 149 (186)
T ss_pred CCCCCCCCccEEeeeEEEEEEe-eeccCCceeeHH
Confidence 4555555555666777788888 899999999875
No 158
>KOG0677|consensus
Probab=97.30 E-value=0.006 Score=61.39 Aligned_cols=223 Identities=17% Similarity=0.172 Sum_probs=126.8
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHH-HHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecC
Q psy2902 204 ITEAVITVPAYFNDAQRQATKDA-GRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDG 282 (945)
Q Consensus 204 ~~~~VitVPa~~~~~qr~~l~~A-a~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~ 282 (945)
-.++.+|-|..-....|+.|-+. .+.-||.-+.+.-...-+.++-+... =+|+|-|.|-+.+.-+--
T Consensus 101 ~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~t-------GvVvDSGDGVTHi~PVye----- 168 (389)
T KOG0677|consen 101 NCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLT-------GVVVDSGDGVTHIVPVYE----- 168 (389)
T ss_pred cCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccc-------eEEEecCCCeeEEeeeec-----
Confidence 44788999998888888888665 57789988877666666665555443 488999999888775431
Q ss_pred CceEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCc-----------ceee
Q psy2902 283 EKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSK-----------QTEI 351 (945)
Q Consensus 283 ~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~-----------~~~i 351 (945)
.-.+. .-..-..+.|++++.-|++++..+= +...-..+ .+..+++|+.|..-. ++++
T Consensus 169 ~~~l~--HLtrRldvAGRdiTryLi~LLl~rG---YafN~tAD-------FETVR~iKEKLCYisYd~e~e~kLalETTv 236 (389)
T KOG0677|consen 169 GFVLP--HLTRRLDVAGRDITRYLIKLLLRRG---YAFNHTAD-------FETVREIKEKLCYISYDLELEQKLALETTV 236 (389)
T ss_pred ceehh--hhhhhccccchhHHHHHHHHHHhhc---cccccccc-------hHHHHHHHhhheeEeechhhhhHhhhhhee
Confidence 11111 1112345689999999988876541 11111111 233445555554321 1112
Q ss_pred eeceeeccCCCCeEEEEEEcHHHHH---HHHHHHHH-----HHHHHHHHHHHHcCCCCC--CCCcEEEecCccccHHHHH
Q psy2902 352 NEPYIAMSNGAPVHLNLKITRAKLE---LLVDELIT-----RTIEPCRIAIKDAGIKVS--DINDIILVGGMTRMPKVQE 421 (945)
Q Consensus 352 ~i~~~~~~~~~~~~~~~~itr~~~e---~~~~~~i~-----~i~~~i~~~l~~~~~~~~--~i~~ViLvGG~s~~p~v~~ 421 (945)
-++.... +.+-.+.+--+.|| .+++|.+- .+.+++-..++.+.++.. --.+|+|+||++--|.+..
T Consensus 237 Lv~~YtL----PDGRvIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPS 312 (389)
T KOG0677|consen 237 LVESYTL----PDGRVIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPS 312 (389)
T ss_pred eeeeeec----CCCcEEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcH
Confidence 1111111 11223555555554 44555331 233444455555544321 1368999999999998888
Q ss_pred HHHHHhC----------C---------CCCCCCCCCchhhhhHHHhhhhccC
Q psy2902 422 KVKEFFG----------K---------DPRRDINPDEAVAVGAAIQGSVLSG 454 (945)
Q Consensus 422 ~l~~~fg----------~---------~~~~~~~p~~avA~GAa~~a~~~~~ 454 (945)
.|++.+. . .+.-+..-...|-+|.|.+|.++..
T Consensus 313 RLEkElkqlyl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD 364 (389)
T KOG0677|consen 313 RLEKELKQLYLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKD 364 (389)
T ss_pred HHHHHHHHHHHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcC
Confidence 7766541 1 1111222245788888888876654
No 159
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=97.24 E-value=0.0011 Score=77.14 Aligned_cols=85 Identities=15% Similarity=0.034 Sum_probs=66.1
Q ss_pred CcccccCCCceeEEeeCHHHHhcCCeEEEec----C--CC--------eEEEEeCCCCCCCcEEEECCCCcCCCCCCCCc
Q psy2902 829 KVFERDGDDLHYEMPISFSTAALGGEIEAPT----L--NG--------KAFFVIPEGTQSGKIFRLRGKGIKNIRSSIPG 894 (945)
Q Consensus 829 ~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~----l--~g--------~~~~~i~~~~~~g~~~~i~g~G~~~~~~~~~G 894 (945)
+.|....-||.+.+.|+|.+++.|++.+|.. . +| ...|.||+|++.|+++|++|+|-...+ + .|
T Consensus 650 ~~~~~~~~dI~y~l~vtLEeLY~G~tKkIKitR~V~~g~G~ktvkE~ktLeVkIPpGVkdGqkIRf~GeGDegpg-g-~G 727 (871)
T TIGR03835 650 PNLDETNVNLVYEEEVPQILFFNNQIKEIKYTRHTVDGNTESTTNEAITLEIQLPITSQLNISAIFKGFGHDFGN-G-CG 727 (871)
T ss_pred CCccccccceEEecccCHHHHhCCCeEEEEEEEeeccCCCcceeeeeEEEEEecCCCCCCCCEEEeccccCCCCC-C-CC
Confidence 4455666799999999999999999988832 2 22 245679999999999999999987533 2 49
Q ss_pred cEEEEEEEECCCCCCHHHHHH
Q psy2902 895 DLFCHVTIETPVQLTEYQKKL 915 (945)
Q Consensus 895 dl~v~~~i~~p~~l~~~~~~~ 915 (945)
||||.+++..+..+..+..+|
T Consensus 728 DLyVvIkVKPHp~FrRdGdDL 748 (871)
T TIGR03835 728 DLKVVFKVIPSNFFQIKNDGL 748 (871)
T ss_pred CEEEEEEEcCCCCeEEECCeE
Confidence 999999999877765544333
No 160
>KOG0797|consensus
Probab=97.14 E-value=0.0059 Score=67.38 Aligned_cols=121 Identities=16% Similarity=0.169 Sum_probs=85.6
Q ss_pred eeChhhHHHHHHHHHHHHHHHHhCCCCC-----cEEEEcCCCCCHHHH-HHHHHHHHHcCCccceecchhHHHHHHhccC
Q psy2902 178 KLAPPQISAEVLRKMKKTAEDYLGGEIT-----EAVITVPAYFNDAQR-QATKDAGRIAGLEVKRIINEPTAAALAFGLD 251 (945)
Q Consensus 178 ~~~~~ev~a~~L~~l~~~a~~~~~~~~~-----~~VitVPa~~~~~qr-~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~ 251 (945)
..+..++++++-+-+.......+..+.. .+|+-||-.|..... +.+.-.....||..+.++-|..||.++.++.
T Consensus 196 y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGls 275 (618)
T KOG0797|consen 196 YYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGLS 275 (618)
T ss_pred chhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCcc
Confidence 3455566655444444444444544433 589999999987665 4556667888999999999999999988776
Q ss_pred CCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHH
Q psy2902 252 KSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILD 312 (945)
Q Consensus 252 ~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~ 312 (945)
. .-|||+|+-+|.+++++-+-...+..+.. ..||.||++.|+-+++.
T Consensus 276 s-------~CVVdiGAQkTsIaCVEdGvs~~ntri~L-------~YGGdDitr~f~~ll~r 322 (618)
T KOG0797|consen 276 S-------ACVVDIGAQKTSIACVEDGVSLPNTRIIL-------PYGGDDITRCFLWLLRR 322 (618)
T ss_pred c-------eeEEEccCcceeEEEeecCccccCceEEe-------ccCCchHHHHHHHHHHh
Confidence 4 47789999999999997543333333332 45999999998866554
No 161
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=97.13 E-value=0.00029 Score=62.77 Aligned_cols=40 Identities=35% Similarity=0.890 Sum_probs=33.5
Q ss_pred cCCCCCccccccCc------CcccCCCCCCCceEeEeeceeeeeecCCCCCCceEEe
Q psy2902 718 ICKSCYGNGAKKGT------SPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVI 768 (945)
Q Consensus 718 ~C~~C~G~G~~~~~------~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~ 768 (945)
.|+.|+|+|..... .+++|+.|+|+|+. .|+.|.|+|++.
T Consensus 54 ~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~-----------~C~~C~G~G~~~ 99 (111)
T PLN03165 54 VCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL-----------TCTTCQGSGIQP 99 (111)
T ss_pred CCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee-----------eCCCCCCCEEEe
Confidence 89999999986432 36799999999975 399999999864
No 162
>KOG0680|consensus
Probab=97.07 E-value=0.035 Score=58.11 Aligned_cols=99 Identities=14% Similarity=0.046 Sum_probs=56.0
Q ss_pred CCcEEEEcCCCCC-HHHHHHHHHHHHHcCCccceecchhHHHHHHhc---cCCC---CCCCceEEEEEeCCcceEEEEEE
Q psy2902 204 ITEAVITVPAYFN-DAQRQATKDAGRIAGLEVKRIINEPTAAALAFG---LDKS---GKSDRNIVVYDLGGGTFDVSIIE 276 (945)
Q Consensus 204 ~~~~VitVPa~~~-~~qr~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~---~~~~---~~~~~~vlVvD~GggT~dvsv~~ 276 (945)
-.++++|-|.+-- ..|.....-..+..+++.+. .-+.|+.+++. .+.. .......+|+|.|-+-|-+.-+-
T Consensus 93 ~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~--kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v 170 (400)
T KOG0680|consen 93 DHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVL--KTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVV 170 (400)
T ss_pred cceEEEecccccccchhhhHHHHHHHHhccceEe--ecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhh
Confidence 3478999986543 44444445555666766533 33333333322 2221 12356899999999877766443
Q ss_pred EEeecCCceEEEEEecCCCCCchHHHHHHHHHHHH
Q psy2902 277 IADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYIL 311 (945)
Q Consensus 277 ~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~ 311 (945)
-.....+...+ ..+||..++..|.+++.
T Consensus 171 ~g~~~~qaV~R-------iDvGGK~LTn~LKE~iS 198 (400)
T KOG0680|consen 171 KGIPYYQAVKR-------IDVGGKALTNLLKETIS 198 (400)
T ss_pred cCcchhhceEE-------eecchHHHHHHHHHHhh
Confidence 21111122222 35699999999988875
No 163
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.06 E-value=0.00051 Score=76.57 Aligned_cols=58 Identities=36% Similarity=0.697 Sum_probs=30.9
Q ss_pred ccccceeeEeeccccccCCCCCccccccCc------------------CcccCCCCCCCceEeEeeceeeeeecCCCCCC
Q psy2902 702 QAAYGFNTSIRVPSWDICKSCYGNGAKKGT------------------SPISCFTCSGQGQVRMQQGFFSIQQTCPKCQG 763 (945)
Q Consensus 702 ~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~------------------~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G 763 (945)
|..|+++..+.+. ...|+.|+|+|..... ...+|+.|.|.|.+. .-.+|+.|+|
T Consensus 5 C~~C~g~G~i~v~-~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~-------v~~~c~~c~G 76 (715)
T COG1107 5 CPECGGKGKIVVG-EEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVT-------VYDTCPECGG 76 (715)
T ss_pred ccccCCCceEeee-eeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEE-------EEeecccCCC
Confidence 3344544444332 3556666666654211 144666666666652 4456666666
Q ss_pred ceEE
Q psy2902 764 AGKV 767 (945)
Q Consensus 764 ~g~~ 767 (945)
+|.+
T Consensus 77 ~gkv 80 (715)
T COG1107 77 TGKV 80 (715)
T ss_pred ceeE
Confidence 6664
No 164
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=96.95 E-value=0.15 Score=54.79 Aligned_cols=71 Identities=17% Similarity=0.244 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHh-----CCCCCCCCCCCchhhhhHHHhh
Q psy2902 376 ELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFF-----GKDPRRDINPDEAVAVGAAIQG 449 (945)
Q Consensus 376 e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f-----g~~~~~~~~p~~avA~GAa~~a 449 (945)
.+++....+.+.+.+..++.+..... ..|+|+||..+.+.+.+.+.+.+ ..++..+..|....|.|||++|
T Consensus 196 ~~Il~~a~~~la~~i~~~~~~~~~~~---~~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 196 RDILAEAADELAELIKAVLKRLGPEK---EPVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTCCC---CSEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCC---CeEEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 35556666666667777777665432 22999999999987777774444 3445567789999999999986
No 165
>KOG2813|consensus
Probab=96.88 E-value=0.001 Score=68.40 Aligned_cols=61 Identities=31% Similarity=0.801 Sum_probs=37.1
Q ss_pred cccCCCCCccccccCc-------------------CcccCCCCCCCceEeEeeceeeeeecCCCCCCceEEeecCCcccC
Q psy2902 716 WDICKSCYGNGAKKGT-------------------SPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCN 776 (945)
Q Consensus 716 ~~~C~~C~G~G~~~~~-------------------~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~~~~c~~c~ 776 (945)
...|+.|+|.|..... +...|..|+|+|.. .|+.|.|+|. .+|..|.
T Consensus 198 ~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~~-----------~C~tC~grG~---k~C~TC~ 263 (406)
T KOG2813|consen 198 AMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGIK-----------ECHTCKGRGK---KPCTTCS 263 (406)
T ss_pred ceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCcc-----------cCCcccCCCC---ccccccc
Confidence 3567888877742211 23445555555554 5777777775 5788888
Q ss_pred CCceEeeeeeEEEE
Q psy2902 777 GIGRIKRNKTLEVK 790 (945)
Q Consensus 777 G~g~~~~~~~l~v~ 790 (945)
|.|-...-..+.|.
T Consensus 264 gtgsll~~t~~vV~ 277 (406)
T KOG2813|consen 264 GTGSLLNYTRIVVY 277 (406)
T ss_pred CccceeeeEEEEEE
Confidence 87766554444444
No 166
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=96.56 E-value=0.017 Score=64.83 Aligned_cols=72 Identities=19% Similarity=0.203 Sum_probs=45.9
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHHHcCCcccee---cchhHHHHHHhccCCC-CCCCceEEEEEeCCcceEEEEEEE
Q psy2902 206 EAVITVPAYFNDAQRQATKDAGRIAGLEVKRI---INEPTAAALAFGLDKS-GKSDRNIVVYDLGGGTFDVSIIEI 277 (945)
Q Consensus 206 ~~VitVPa~~~~~qr~~l~~Aa~~AGl~~v~l---i~Ep~AAAl~~~~~~~-~~~~~~vlVvD~GggT~dvsv~~~ 277 (945)
-++||==+--.+.+++.+...+..||==++.- -.|..-|+-..+.... ......|+=+|+||||+.+++++-
T Consensus 87 AVIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGTtN~avf~~ 162 (473)
T PF06277_consen 87 AVIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDIGGGTTNIAVFDN 162 (473)
T ss_pred cEEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeCCCceeEEEEEC
Confidence 35677665666777888888888887322221 1344444443332221 244677888999999999999985
No 167
>KOG0624|consensus
Probab=96.18 E-value=0.0046 Score=64.97 Aligned_cols=58 Identities=31% Similarity=0.322 Sum_probs=44.2
Q ss_pred CcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhc
Q psy2902 577 LTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYG 642 (945)
Q Consensus 577 ~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~ 642 (945)
-++.||-+..+++++.|++|.-..+.... -+.++|+.|..|.++|+|+|+|+.+|...
T Consensus 406 AsKqEI~KAYRKlAqkWHPDNFqdEeEKK--------kAEKKFIDIAAAKEVLsd~EkRrqFDnGe 463 (504)
T KOG0624|consen 406 ASKQEITKAYRKLAQKWHPDNFQDEEEKK--------KAEKKFIDIAAAKEVLSDPEKRRQFDNGE 463 (504)
T ss_pred ccHHHHHHHHHHHHHhcCCccccCHHHHH--------HHHHhhhhHHHHHHhhcCHHHHhhccCCC
Confidence 57889999999999988887643221111 13358999999999999999999998743
No 168
>KOG0718|consensus
Probab=96.13 E-value=0.0025 Score=69.45 Aligned_cols=64 Identities=39% Similarity=0.553 Sum_probs=51.5
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCC
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGID 647 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~ 647 (945)
.-|+|||.+..++...+-++|+-.. .+....+.++|..+-.||++|+|+.+|.|||.+|+.|++
T Consensus 20 dAt~eeI~~AYrr~~~lfHPDkh~d--------pd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 20 DATDEEIKKAYRRLSRLFHPDKHTD--------PDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred ccCHHHHHHHHHHHHHhcCCcccCC--------hhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 4689999999999999988887431 122223445788888999999999999999999999987
No 169
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=96.09 E-value=0.004 Score=61.29 Aligned_cols=28 Identities=29% Similarity=0.837 Sum_probs=18.6
Q ss_pred cccCCCCCCCceEeEeeceeeee--ecCCCCCCceEEe
Q psy2902 733 PISCFTCSGQGQVRMQQGFFSIQ--QTCPKCQGAGKVI 768 (945)
Q Consensus 733 ~~~C~~C~G~G~~~~~~~~~~~~--~~C~~C~G~g~~~ 768 (945)
..+|+.|+|+|.+ +. .+|+.|+|.|++.
T Consensus 99 ~~~C~~C~G~G~~--------i~~~~~C~~C~G~G~v~ 128 (186)
T TIGR02642 99 SCKCPRCRGTGLI--------QRRQRECDTCAGTGRFR 128 (186)
T ss_pred CCcCCCCCCeeEE--------ecCCCCCCCCCCccEEe
Confidence 5567777777766 33 5677777777753
No 170
>PRK03011 butyrate kinase; Provisional
Probab=95.52 E-value=0.14 Score=56.88 Aligned_cols=46 Identities=26% Similarity=0.322 Sum_probs=34.4
Q ss_pred CCCcEEEecCccccHHHHHHHHHHhC----CCCCCCCCCCchhhhhHHHh
Q psy2902 403 DINDIILVGGMTRMPKVQEKVKEFFG----KDPRRDINPDEAVAVGAAIQ 448 (945)
Q Consensus 403 ~i~~ViLvGG~s~~p~v~~~l~~~fg----~~~~~~~~p~~avA~GAa~~ 448 (945)
+++.|+|+||.+..+.+.+.+.+.+. ..+....+-.+|.|.||+..
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~rv 344 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALRV 344 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH
Confidence 57899999999999999999888774 22233444457999998743
No 171
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=94.79 E-value=0.66 Score=52.31 Aligned_cols=59 Identities=19% Similarity=0.288 Sum_probs=40.2
Q ss_pred EEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHH
Q psy2902 365 HLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVK 424 (945)
Q Consensus 365 ~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~ 424 (945)
.-.+.+|..+++++... -..+..-++-+|++++++..||+.|+|.||+..---..+.+.
T Consensus 290 ~~~i~itq~DIr~~qlA-KaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~ 348 (412)
T PF14574_consen 290 GDDIYITQKDIREFQLA-KAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIR 348 (412)
T ss_dssp SS-EEEEHHHHHHHHHH-HHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHH
T ss_pred CCCEEEeHHHHHHHHHH-HHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhh
Confidence 34689999999876432 234455677789999999999999999999998766666664
No 172
>PRK10854 exopolyphosphatase; Provisional
Probab=94.78 E-value=0.39 Score=56.57 Aligned_cols=57 Identities=21% Similarity=0.348 Sum_probs=38.8
Q ss_pred HHHHHHHHHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEE
Q psy2902 220 RQATKDAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIE 276 (945)
Q Consensus 220 r~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~ 276 (945)
...+.++-+.+|+++-.+=.|-+|...+.+...........+|+|+|||++.+++++
T Consensus 99 ~~fl~~i~~~tGl~i~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~ 155 (513)
T PRK10854 99 TDFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGE 155 (513)
T ss_pred HHHHHHHHHHHCCCeEEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEec
Confidence 345556667779987555555555555555554433345689999999999999986
No 173
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=94.58 E-value=0.018 Score=69.15 Aligned_cols=60 Identities=30% Similarity=0.454 Sum_probs=50.3
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCC
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGID 647 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~ 647 (945)
.-|..+|.+..++++...++|+ |+.. .+..+|..+++||++|||+++|+.||.+|..|+.
T Consensus 584 dAS~~EIKKAYRKLAlkyHPDK---------N~~~---~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~ 643 (1136)
T PTZ00341 584 NADMKEISERYFKLAENYYPPK---------RSGN---EGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIK 643 (1136)
T ss_pred CCCHHHHHHHHHHHHHHhCCCC---------CCCc---hHHHHHHHHHHHHHHhCCHHHHHHHhhccccccC
Confidence 4578999999999999999986 3321 2456899999999999999999999999988765
No 174
>KOG2531|consensus
Probab=94.55 E-value=0.089 Score=57.82 Aligned_cols=57 Identities=19% Similarity=0.335 Sum_probs=48.2
Q ss_pred HHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhc
Q psy2902 395 KDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVL 452 (945)
Q Consensus 395 ~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~ 452 (945)
+..+......+.|+.|||.|+...|-+.|++.||.++... +..+++|+|+|+.|+..
T Consensus 434 ~~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf~apVy~~-~~~~sa~lG~A~ra~ya 490 (545)
T KOG2531|consen 434 EPLGFKSNPPTRILVTGGASRNEAILQIIADVFGAPVYTI-EGPNSAALGGAYRAAYA 490 (545)
T ss_pred ccccCCCCCCceEEEecCccccHHHHHHHHHHhCCCeEee-cCCchhhHHHHHHHHHH
Confidence 3455555677899999999999999999999999999754 67789999999998753
No 175
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=94.48 E-value=0.39 Score=56.35 Aligned_cols=80 Identities=19% Similarity=0.158 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCc
Q psy2902 219 QRQATKDAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLG 298 (945)
Q Consensus 219 qr~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lG 298 (945)
....+.++-+.+|+++-.+-.|-+|-..+.+........+..+|+|+|||++.+++++- +.+.. .....+|
T Consensus 93 ~~~fl~~i~~~tGl~ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~------~~~~~---~~Sl~lG 163 (496)
T PRK11031 93 ADEFLAKAQEILGCPVQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTG------AQATS---LFSLSMG 163 (496)
T ss_pred HHHHHHHHHHHHCCCeEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecC------Cceee---eeEEecc
Confidence 34556666777899975555555555554455443333456899999999999998752 22111 1124567
Q ss_pred hHHHHHHHH
Q psy2902 299 GEDFDQRII 307 (945)
Q Consensus 299 G~~iD~~l~ 307 (945)
.-.+.+.+.
T Consensus 164 ~vrl~e~f~ 172 (496)
T PRK11031 164 CVTWLERYF 172 (496)
T ss_pred chHHHHHhc
Confidence 777665543
No 176
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=94.44 E-value=0.23 Score=51.63 Aligned_cols=48 Identities=27% Similarity=0.320 Sum_probs=44.6
Q ss_pred EEeecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCCc
Q psy2902 789 VKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDL 838 (945)
Q Consensus 789 v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl 838 (945)
+.+|.|+..+..+++.+.+.... ...++.+..+..++|+.|..++.++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (237)
T COG2214 180 STIKAGALEGKALRLKGLLKSAR--GALGKARLKELSKRHPPFALEGDDK 227 (237)
T ss_pred ccCCcccccCceeeecccCCcCC--CCcccceeeeeccCCCCccccCCcc
Confidence 78999999999999999998766 6789999999999999999999998
No 177
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.01 E-value=0.73 Score=53.28 Aligned_cols=94 Identities=19% Similarity=0.217 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCC---CHHHHHHHHHHHHHcCCccceecchhHHHHHHhccCCCCCCCce
Q psy2902 183 QISAEVLRKMKKTAEDYLGGEITEAVITVPAYF---NDAQRQATKDAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRN 259 (945)
Q Consensus 183 ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~---~~~qr~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~ 259 (945)
+.+...+..|+..++...+..+.++.+ |-... -...-+.+..+.+..|+++-.+--|-+|--.+++..........
T Consensus 52 eai~R~~~aL~~f~e~~~~~~~~~v~~-vATsA~R~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~~~~ 130 (492)
T COG0248 52 EAIERALSALKRFAELLDGFGAEEVRV-VATSALRDAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPRKGD 130 (492)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCEEEE-ehhHHHHcCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCCCCC
Confidence 344444555555554444455555322 11111 12224567778888899876666667776666665554344778
Q ss_pred EEEEEeCCcceEEEEEEE
Q psy2902 260 IVVYDLGGGTFDVSIIEI 277 (945)
Q Consensus 260 vlVvD~GggT~dvsv~~~ 277 (945)
.+|+|+|||+|.+++..-
T Consensus 131 ~lv~DIGGGStEl~~g~~ 148 (492)
T COG0248 131 GLVIDIGGGSTELVLGDN 148 (492)
T ss_pred EEEEEecCCeEEEEEecC
Confidence 999999999999999863
No 178
>KOG2813|consensus
Probab=94.00 E-value=0.028 Score=58.28 Aligned_cols=36 Identities=42% Similarity=1.117 Sum_probs=31.8
Q ss_pred ccccCCCCCccccccCcCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEE
Q psy2902 715 SWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKV 767 (945)
Q Consensus 715 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~ 767 (945)
....|.-|+|+|.. .|++|.|+|.+ +|..|.|.|.+
T Consensus 233 t~~~C~~C~G~G~~------~C~tC~grG~k-----------~C~TC~gtgsl 268 (406)
T KOG2813|consen 233 THDLCYMCHGRGIK------ECHTCKGRGKK-----------PCTTCSGTGSL 268 (406)
T ss_pred ccchhhhccCCCcc------cCCcccCCCCc-----------ccccccCccce
Confidence 45789999999976 69999999987 89999999975
No 179
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=93.88 E-value=5.1 Score=44.15 Aligned_cols=46 Identities=33% Similarity=0.405 Sum_probs=31.6
Q ss_pred HHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEE
Q psy2902 228 RIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSII 275 (945)
Q Consensus 228 ~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~ 275 (945)
+..|++ +.+.++..|+|++-.........++++++.+|.|- -.+++
T Consensus 95 ~~~~~p-v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi-G~giv 140 (318)
T TIGR00744 95 ARVGLP-VVVENDANAAALGEYKKGAGKGARDVICITLGTGL-GGGII 140 (318)
T ss_pred HHHCCC-EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc-EEEEE
Confidence 345776 67999999999876443322345778888999875 55554
No 180
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=93.84 E-value=0.63 Score=49.61 Aligned_cols=45 Identities=16% Similarity=0.187 Sum_probs=38.0
Q ss_pred CCCcEEEecC-ccccHHHHHHHHHHh---CCCCCCCCCCCchhhhhHHH
Q psy2902 403 DINDIILVGG-MTRMPKVQEKVKEFF---GKDPRRDINPDEAVAVGAAI 447 (945)
Q Consensus 403 ~i~~ViLvGG-~s~~p~v~~~l~~~f---g~~~~~~~~p~~avA~GAa~ 447 (945)
.+..|+++|| .+..|.+++.+...+ +.+...+.+....+|+||++
T Consensus 230 ~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 230 NIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred CCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 4689999999 678999999998877 45556788899999999986
No 181
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=93.44 E-value=0.76 Score=48.57 Aligned_cols=71 Identities=21% Similarity=0.170 Sum_probs=39.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHcCCcccee---cchhHHHHHHhccCCC-CCCCceEEEEEeCCcceEEEEEEE
Q psy2902 207 AVITVPAYFNDAQRQATKDAGRIAGLEVKRI---INEPTAAALAFGLDKS-GKSDRNIVVYDLGGGTFDVSIIEI 277 (945)
Q Consensus 207 ~VitVPa~~~~~qr~~l~~Aa~~AGl~~v~l---i~Ep~AAAl~~~~~~~-~~~~~~vlVvD~GggT~dvsv~~~ 277 (945)
++||=-..-...+|..+......||==++.- -.|+.-|.-..+...- ......|+=+|+||||+..+++.-
T Consensus 90 vIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~Seqr~t~v~NlDIGGGTtN~slFD~ 164 (473)
T COG4819 90 VIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSEQRLTRVLNLDIGGGTTNYSLFDA 164 (473)
T ss_pred EEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccccchhhhhceEEEEEeccCCccceeeecc
Confidence 4566444445555666655555555222111 1233333332322221 234567888999999999999875
No 182
>KOG0681|consensus
Probab=93.42 E-value=0.76 Score=51.82 Aligned_cols=125 Identities=10% Similarity=0.051 Sum_probs=75.3
Q ss_pred CeeeChhhHHHHHHHHHHHHHHHHhCCC---C-CcEEEEcCCCCCHHHHHHHHHH-HHHcCCccceecchhHHHHHHhcc
Q psy2902 176 GKKLAPPQISAEVLRKMKKTAEDYLGGE---I-TEAVITVPAYFNDAQRQATKDA-GRIAGLEVKRIINEPTAAALAFGL 250 (945)
Q Consensus 176 ~~~~~~~ev~a~~L~~l~~~a~~~~~~~---~-~~~VitVPa~~~~~qr~~l~~A-a~~AGl~~v~li~Ep~AAAl~~~~ 250 (945)
+..++-.++...+|.|+..+. +.. + ..+++|-+..-...+|+.|.+. .+.-|++.|.+--+..=+.++
T Consensus 88 ~nVvtNwel~E~ilDY~F~~L----G~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~h--- 160 (645)
T KOG0681|consen 88 RNVVTNWELMEQILDYIFGKL----GVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFYH--- 160 (645)
T ss_pred CCccccHHHHHHHHHHHHHhc----CCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHhh---
Confidence 444566677777777666654 433 2 3467887765556778888665 466788877665444433332
Q ss_pred CCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHHHH
Q psy2902 251 DKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEF 314 (945)
Q Consensus 251 ~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~ 314 (945)
.........-||+++|..+|.|-.+-- +.. ++....-.++||.....-|.+++.-++
T Consensus 161 N~~~~~~~~~liis~g~~~T~vipvld------G~~-il~~~kRiN~GG~qa~dYL~~Lmq~Ky 217 (645)
T KOG0681|consen 161 NYGKSSNKSGLIISMGHSATHVIPVLD------GRL-ILKDVKRINWGGYQAGDYLSRLMQLKY 217 (645)
T ss_pred ccCcccCcceEEEecCCCcceeEEEec------Cch-hhhcceeeccCcchHHHHHHHHHhccC
Confidence 221122346899999999998877643 221 112223356799888766666665543
No 183
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=93.16 E-value=0.18 Score=46.68 Aligned_cols=50 Identities=28% Similarity=0.312 Sum_probs=26.7
Q ss_pred EEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCc--hHHHH--HHHHHHHHH
Q psy2902 260 IVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLG--GEDFD--QRIIDYILD 312 (945)
Q Consensus 260 vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lG--G~~iD--~~l~~~l~~ 312 (945)
|+++|+|++++.+++++.. ....+.++..+....-| +..++ +.+.+-+..
T Consensus 1 i~~iDiGs~~~~~~i~~~~---~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~ 54 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDG---SDGYIRVLGVGEVPSKGIKGGHITDIEDISKAIKI 54 (120)
T ss_dssp EEEEEE-SSSEEEEEEETT---EEEEEEEES----------HHHHH--HHHHHHHT-
T ss_pred CEEEEcCCCcEEEEEEEeC---CCCcEEEEEEecccccccCCCEEEEHHHHHHHHHH
Confidence 5789999999999999862 22345554333111111 56666 555544433
No 184
>KOG0716|consensus
Probab=93.10 E-value=0.052 Score=55.70 Aligned_cols=60 Identities=37% Similarity=0.551 Sum_probs=46.2
Q ss_pred CcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCC
Q psy2902 577 LTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGID 647 (945)
Q Consensus 577 ~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~ 647 (945)
-+.++|++..+.+....+.|+.- +. .+...+|+++++||.+|+|+.+|.+||.+|+.|+.
T Consensus 43 at~d~IKKaYR~L~~k~HPD~~g----------d~-P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~ 102 (279)
T KOG0716|consen 43 ATKDEIKKAYRKLALKYHPDKNG----------DN-PEATDKFKEINTAYAILSDPTKRNVYDEYGELGLK 102 (279)
T ss_pred cchHHHHHHHHHHHHHhCCCcCC----------CC-chhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHH
Confidence 45677777777777766666521 21 34667999999999999999999999999988764
No 185
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=92.97 E-value=1 Score=46.76 Aligned_cols=47 Identities=19% Similarity=0.208 Sum_probs=35.1
Q ss_pred CCCCCcEEEecCccccHHHHHHHHHHhC----CCCCCCCCCCchhhhhHHH
Q psy2902 401 VSDINDIILVGGMTRMPKVQEKVKEFFG----KDPRRDINPDEAVAVGAAI 447 (945)
Q Consensus 401 ~~~i~~ViLvGG~s~~p~v~~~l~~~fg----~~~~~~~~p~~avA~GAa~ 447 (945)
...+|.|+|+||.++...+-++|.++.. .-+.-..+-.+|.|.||..
T Consensus 294 ~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lR 344 (358)
T COG3426 294 KGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALR 344 (358)
T ss_pred CCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHH
Confidence 4578999999999999999999988763 2223334555688888853
No 186
>PRK09557 fructokinase; Reviewed
Probab=92.83 E-value=17 Score=39.63 Aligned_cols=44 Identities=16% Similarity=0.297 Sum_probs=29.1
Q ss_pred cCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEE
Q psy2902 230 AGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSII 275 (945)
Q Consensus 230 AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~ 275 (945)
.|++ +.+.++..|+|++-.........++++.+.+|.| +-..++
T Consensus 96 ~~~p-v~~~NDa~aaA~aE~~~g~~~~~~~~~~l~igtG-iG~giv 139 (301)
T PRK09557 96 LNRE-VRLANDANCLAVSEAVDGAAAGKQTVFAVIIGTG-CGAGVA 139 (301)
T ss_pred HCCC-EEEccchhHHHHHHHHhcccCCCCcEEEEEEccc-eEEEEE
Confidence 4775 6789999999998654332234567778888865 333443
No 187
>KOG0713|consensus
Probab=92.69 E-value=0.063 Score=57.06 Aligned_cols=225 Identities=17% Similarity=0.167 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCCCc-ccccccccccccccccc
Q psy2902 594 EEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSA-SAEASNFADAFGDIFGD 672 (945)
Q Consensus 594 ~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~~~-~~~~~~f~d~f~~~F~~ 672 (945)
-.|..+-+.+...|.+.+++.+..++.. ||..+++ .+...+ +.+.+|.++ ..+. ..|++|+..
T Consensus 50 pddp~A~e~F~~in~AYEVLsDpekRk~----YD~~GEe-------gL~~~~-~~~~~g~~~~~~f~----~~f~dfg~~ 113 (336)
T KOG0713|consen 50 PDDPNANEKFKEINAAYEVLSDPEKRKH----YDTYGEE-------GLKDEN-KDGEGGGGGNDIFS----AFFGDFGVT 113 (336)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCHHHHHH----HHhhhHh-------hhcccc-cccccCCcccchHH----Hhhcccccc
Confidence 3444455556666666666666666544 7776632 222222 111122221 2222 223333222
Q ss_pred cCCCCCCCCCCCCCCCCccceeeccccccccc------cceeeEeeccccccC-----CCCCccccccCcCcccCCCCCC
Q psy2902 673 IFGSNRDRDNNNKGSNGKDLRYNLEITLEQAA------YGFNTSIRVPSWDIC-----KSCYGNGAKKGTSPISCFTCSG 741 (945)
Q Consensus 673 ~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~------~g~~~~~~~~~~~~C-----~~C~G~G~~~~~~~~~C~~C~G 741 (945)
+.|........++.+...++..+++..+...+ .+..+.....+...| ..=.|.|.....+...|..|.+
T Consensus 114 ~~g~~~~e~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~~~g~~~~~~~~~~~~~~~~~g~~~~~q~~~~~~~~~ 193 (336)
T KOG0713|consen 114 VGGNPLEEALPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKPAPGTRKCNCRLEMFTQQEGPGRFQMLQEAVCDECPN 193 (336)
T ss_pred cCCCcccCCCCCCceEEeehhhchhhhhcccHHHHHhccCceeecCcccccCChhhheeeccCCChhhhhhhhhhccCCc
Confidence 22222222345566666666666666665443 344444444433333 2223556666667889999999
Q ss_pred CceE--------eEeece-eeeeecCCCCCCce------------EEeecCCcccCCCceEee---------------ee
Q psy2902 742 QGQV--------RMQQGF-FSIQQTCPKCQGAG------------KVIPHPCLDCNGIGRIKR---------------NK 785 (945)
Q Consensus 742 ~G~~--------~~~~~~-~~~~~~C~~C~G~g------------~~~~~~c~~c~G~g~~~~---------------~~ 785 (945)
-+.. ....|. ......-..|.+.- +..+|+.+.+.+.+.... ..
T Consensus 194 ~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~gD~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~~ 273 (336)
T KOG0713|consen 194 VKLVLEEDPLEVEFERGDADGPEEIFELEGEPHIDGVPGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEIL 273 (336)
T ss_pred cceeecCCceeeeeeecccCCceeeeeccCCcceecccCCceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHhh
Confidence 6642 111111 11222222333332 246799999998655443 11
Q ss_pred e-----EEEEeecCCCCCeEEEEcCCCCCCCC-CCCCccEEEEEEEecCCccccc
Q psy2902 786 T-----LEVKIPAGIENNMRIRSTGNGEPGLN-GGSNGNLYIEIHIKPHKVFERD 834 (945)
Q Consensus 786 ~-----l~v~ip~G~~~g~~i~~~g~G~~~~~-~~~~Gdl~i~i~v~~~~~~~r~ 834 (945)
+ +.+.-..++.++..++..++|+|... ....|.+++++.+.+|..+.++
T Consensus 274 ~~d~~~~~~~r~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~~~~~~~~ 328 (336)
T KOG0713|consen 274 HLDGHYVEVSRKKITWPGARTRKKGEGMPLLKNRNEKGNLYVTFDVEFPKSSLSD 328 (336)
T ss_pred ccchhhhhhhhhhccccchhhhhhhccchhhhccchhcceeEEecccCcccccch
Confidence 1 24555678899999999999999654 4568999999999988665444
No 188
>KOG0715|consensus
Probab=92.28 E-value=0.13 Score=55.24 Aligned_cols=67 Identities=25% Similarity=0.537 Sum_probs=49.3
Q ss_pred eeeccccccccccceeeEeeccccccCCCCCccccccCc-----CcccCCCCCCCceEeEeeceeeeeecCCCCCCceEE
Q psy2902 693 RYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGT-----SPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKV 767 (945)
Q Consensus 693 ~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~-----~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~ 767 (945)
++++...-.+..|++...........|..|.|+|..... ...+|..|+|.|.+ ....|..|.|.|.+
T Consensus 158 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~--------~~~~c~~~~g~~~v 229 (288)
T KOG0715|consen 158 RISFNVLSDCETCFGSGAEEGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLV--------LRDNCQACSGAGQV 229 (288)
T ss_pred ceEEEeecccccccCcCcccccccccchhhhCcccccccccCCcceeeccccccccee--------ccchHHHhhcchhh
Confidence 344444445666666667778888999999999933221 12279999999998 66669999999975
No 189
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=92.22 E-value=2.3 Score=46.49 Aligned_cols=54 Identities=24% Similarity=0.439 Sum_probs=33.4
Q ss_pred HHHHHHHHHcCCccceecchhHHHHHHh-ccCCCCCCCceEEEEEeCCcceEEEEEE
Q psy2902 221 QATKDAGRIAGLEVKRIINEPTAAALAF-GLDKSGKSDRNIVVYDLGGGTFDVSIIE 276 (945)
Q Consensus 221 ~~l~~Aa~~AGl~~v~li~Ep~AAAl~~-~~~~~~~~~~~vlVvD~GggT~dvsv~~ 276 (945)
..+...-..+|++. .+++..+=|.+.| +....... ...+++|+|||++.++.+.
T Consensus 89 ~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~~~~-~~~~v~DiGGGSte~~~~~ 143 (300)
T TIGR03706 89 EFLREAEAILGLPI-EVISGEEEARLIYLGVAHTLPI-ADGLVVDIGGGSTELILGK 143 (300)
T ss_pred HHHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhCCCC-CCcEEEEecCCeEEEEEec
Confidence 34444445679876 4555555555544 33322222 2249999999999999875
No 190
>PRK14878 UGMP family protein; Provisional
Probab=91.87 E-value=21 Score=39.36 Aligned_cols=91 Identities=14% Similarity=0.124 Sum_probs=48.6
Q ss_pred CCCcEEEEc-CCCCCHHHH--HHHHHHHHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEe
Q psy2902 203 EITEAVITV-PAYFNDAQR--QATKDAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIAD 279 (945)
Q Consensus 203 ~~~~~VitV-Pa~~~~~qr--~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~ 279 (945)
+++.+.+|. |..|+-... ..-+..|...+++ +..++.-.|-|++.......... -+|++| ||++.+..++
T Consensus 65 did~Iavt~gPG~~~~lrvg~~~Ak~la~~~~~p-~~~v~h~~~Ha~sa~~~s~~~~~-l~l~vs--Gg~t~i~~~~--- 137 (323)
T PRK14878 65 DIDAVAVSQGPGLGPALRVGATAARALALKYNKP-LVPVNHCIAHIEIGRLTTGAKDP-VVLYVS--GGNTQVLAFR--- 137 (323)
T ss_pred HCCEEEEecCCCcccchHHHHHHHHHHHHHhCCC-ccccchHHHHHHhhhhcCCCCCC-EEEEEE--cCCeEEEEEe---
Confidence 467778887 777763221 2223334445655 34556666655543333332223 566666 4567665554
Q ss_pred ecCCceEEEEEecCCCCCchHHHHH
Q psy2902 280 VDGEKQFEVLSTNGDTFLGGEDFDQ 304 (945)
Q Consensus 280 ~~~~~~~~vl~~~~~~~lGG~~iD~ 304 (945)
.+.++++...- ..--|+.||.
T Consensus 138 ---~~~~~~~~~t~-d~s~Gr~fD~ 158 (323)
T PRK14878 138 ---GGRYRVFGETL-DIAIGNALDT 158 (323)
T ss_pred ---CCeEEEeeeec-CcchhHHHHH
Confidence 23577776633 3335677764
No 191
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=91.58 E-value=0.082 Score=55.96 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=18.0
Q ss_pred ceEEEEcCccceEEEEEeCCc
Q psy2902 72 KIIGIDLGTTNSCVSIIEGSQ 92 (945)
Q Consensus 72 ~viGID~GTt~s~va~~~~~~ 92 (945)
++||||+|||++++++++.++
T Consensus 1 y~lgiDiGTts~K~~l~d~~g 21 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDEDG 21 (245)
T ss_dssp EEEEEEECSSEEEEEEEETTS
T ss_pred CEEEEEEcccceEEEEEeCCC
Confidence 479999999999999998543
No 192
>PF13941 MutL: MutL protein
Probab=91.36 E-value=1 Score=51.36 Aligned_cols=40 Identities=30% Similarity=0.379 Sum_probs=28.1
Q ss_pred eecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEE
Q psy2902 236 RIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIE 276 (945)
Q Consensus 236 ~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~ 276 (945)
.+++-|.|+..+...-.. .....+|+||+||-|||+--+.
T Consensus 227 ~i~PTP~AVl~~~~lla~-~~~g~llvVDIGGATTDVhSv~ 266 (457)
T PF13941_consen 227 PIMPTPAAVLRAAELLAE-GGIGDLLVVDIGGATTDVHSVA 266 (457)
T ss_pred cccCCHHHHHHHHHHHHh-cccCCEEEEEccCcccchhhhc
Confidence 367777776555433221 1567799999999999998765
No 193
>PTZ00107 hexokinase; Provisional
Probab=90.74 E-value=26 Score=40.49 Aligned_cols=64 Identities=13% Similarity=0.098 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCc--cceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEE
Q psy2902 212 PAYFNDAQRQATKDAGRIAGLE--VKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSII 275 (945)
Q Consensus 212 Pa~~~~~qr~~l~~Aa~~AGl~--~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~ 275 (945)
|..-...-.+.|.+|...-|++ ++.++++.+|..++.........+...+-+=+|.||=-+.+.
T Consensus 189 ~~v~G~DV~~lL~~Al~r~~l~v~v~AivNDTVgTL~a~ay~~~~~~~~~~iGlIlGTG~NacY~E 254 (464)
T PTZ00107 189 DPVEGKDVGELLNDAFKRNNVPANVVAVLNDTVGTLISCAYQKPKNTPPCQVGVIIGTGSNACYFE 254 (464)
T ss_pred CCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHHHHhcCcCCCCCceEEEEEeccccceeee
Confidence 4455566788889998888874 577999999988877665421123344444478775444433
No 194
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=89.67 E-value=1.7 Score=44.45 Aligned_cols=72 Identities=18% Similarity=0.224 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEEcCCCCCHH-HHHHHHHHHHHcCCccceecchhHHHHHHhccCC--CCCCCceEEEEE
Q psy2902 188 VLRKMKKTAEDYLGGEITEAVITVPAYFNDA-QRQATKDAGRIAGLEVKRIINEPTAAALAFGLDK--SGKSDRNIVVYD 264 (945)
Q Consensus 188 ~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~-qr~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~--~~~~~~~vlVvD 264 (945)
-..++.+..+..++.++ .++++-..|... .....++. |||.+...-+ .....+..++||
T Consensus 75 GVe~Ii~~v~~Af~~pv--~~v~~~G~~~ssEa~~~~~~v----------------AAaNW~Ata~~~~e~~~dsci~VD 136 (330)
T COG1548 75 GVEDIIDTVEKAFNCPV--YVVDVNGNFLSSEALKNPREV----------------AAANWVATARFLAEEIKDSCILVD 136 (330)
T ss_pred HHHHHHHHHHHhcCCce--EEEeccCcCcChhHhcCHHHH----------------HHhhhHHHHHHHHHhcCCceEEEe
Confidence 45567777776665544 778888777653 22212222 2221111000 012346688899
Q ss_pred eCCcceEEEEEEE
Q psy2902 265 LGGGTFDVSIIEI 277 (945)
Q Consensus 265 ~GggT~dvsv~~~ 277 (945)
+|..|+|+.-+.-
T Consensus 137 ~GSTTtDIIPi~~ 149 (330)
T COG1548 137 MGSTTTDIIPIKD 149 (330)
T ss_pred cCCcccceEeecc
Confidence 9999999987653
No 195
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=89.26 E-value=34 Score=36.63 Aligned_cols=66 Identities=12% Similarity=0.135 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCcccc-HHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhcc
Q psy2902 381 ELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRM-PKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLS 453 (945)
Q Consensus 381 ~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~-p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~ 453 (945)
.++++....+...++...+ ......+.|.||.... +++.....+..-.+ |..-+..||.+.|....
T Consensus 227 ~Il~~aa~~i~~~~~~l~~-~~g~~~l~l~GG~~~~~~~~~~~~~~~l~~~------~~~D~~~GA~~~A~~~~ 293 (301)
T COG2971 227 RILKEAAAYIATLLEALSI-FNGSEKLSLLGGLAPSYPYYLSLFRRALLVP------PIGDALSGAVLLALGRF 293 (301)
T ss_pred HHHHHHHHHHHHHHHHHhc-ccCCceEEEeccccccchhhHHHHHHHhcCC------ccccHHHHHHHHHHHhh
Confidence 4555555556555554421 1234679999999887 88888888776333 35577889998886443
No 196
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=89.21 E-value=36 Score=36.82 Aligned_cols=41 Identities=24% Similarity=0.185 Sum_probs=27.6
Q ss_pred HcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceE
Q psy2902 229 IAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFD 271 (945)
Q Consensus 229 ~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~d 271 (945)
..+++ +.+.++..|+|++-.... ....++++++-+|.|---
T Consensus 95 ~~~~p-v~v~NDa~a~a~aE~~~g-~~~~~~~~~l~ig~GiG~ 135 (291)
T PRK05082 95 LTDLP-TIALNDAQAAAWAEYQAL-PDDIRNMVFITVSTGVGG 135 (291)
T ss_pred HhCCC-EEEECcHHHHHHHHHHhc-CCCCCCEEEEEECCCcce
Confidence 34776 679999999998754322 234467888888866433
No 197
>PRK09604 UGMP family protein; Validated
Probab=89.15 E-value=41 Score=37.30 Aligned_cols=52 Identities=19% Similarity=0.314 Sum_probs=37.6
Q ss_pred CCCcEEEecCccccHHHHHHHHHHh---CCCCCCCC---CCCchhhhhHHHhhhhccC
Q psy2902 403 DINDIILVGGMTRMPKVQEKVKEFF---GKDPRRDI---NPDEAVAVGAAIQGSVLSG 454 (945)
Q Consensus 403 ~i~~ViLvGG~s~~p~v~~~l~~~f---g~~~~~~~---~p~~avA~GAa~~a~~~~~ 454 (945)
.++.|+|+||.+...++++.|.+.+ +.++..+. -.|.++++|+|=+-....|
T Consensus 254 ~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~~~~~g 311 (332)
T PRK09604 254 GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYERLKAG 311 (332)
T ss_pred CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHHHHHcC
Confidence 4678999999999999999999988 55444332 2467888888744433333
No 198
>KOG1385|consensus
Probab=88.99 E-value=0.9 Score=49.86 Aligned_cols=78 Identities=21% Similarity=0.371 Sum_probs=46.7
Q ss_pred CeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCccceecchhHHH--HHHhccCCC
Q psy2902 176 GKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAA--ALAFGLDKS 253 (945)
Q Consensus 176 ~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~v~li~Ep~AA--Al~~~~~~~ 253 (945)
|-.+.+.+-+..+|..++++.+......+..-.++| +...+|..-| .+.|....-
T Consensus 151 GLRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~VsI-----------------------m~GtdEGv~aWiTiN~Llg~L 207 (453)
T KOG1385|consen 151 GLRLLPGSKADNILQAVRELLKNDSPFPVVEDAVSI-----------------------MDGTDEGVYAWITINYLLGTL 207 (453)
T ss_pred ccccCChhHHHHHHHHHHHHHhccCCccccCCceee-----------------------ccCcccceeeeeehhhhhccc
Confidence 567788999999999999988744433322222222 1122232221 122322221
Q ss_pred C-CCCceEEEEEeCCcceEEEEEE
Q psy2902 254 G-KSDRNIVVYDLGGGTFDVSIIE 276 (945)
Q Consensus 254 ~-~~~~~vlVvD~GggT~dvsv~~ 276 (945)
. ....++.|+|+|||+|.++..-
T Consensus 208 ~~~~~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 208 GAPGHRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred CCCCCCceEEEEcCCceEEEEEec
Confidence 1 2257899999999999999764
No 199
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=88.61 E-value=3.4 Score=44.97 Aligned_cols=20 Identities=25% Similarity=0.240 Sum_probs=17.6
Q ss_pred ceEEEEEeCCcceEEEEEEE
Q psy2902 258 RNIVVYDLGGGTFDVSIIEI 277 (945)
Q Consensus 258 ~~vlVvD~GggT~dvsv~~~ 277 (945)
.+++++||||.|+|++++.-
T Consensus 128 ~~~I~~DmGGTTtDi~~i~~ 147 (318)
T TIGR03123 128 PECLFVDMGSTTTDIIPIID 147 (318)
T ss_pred CCEEEEEcCccceeeEEecC
Confidence 45999999999999999863
No 200
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=88.32 E-value=52 Score=39.20 Aligned_cols=50 Identities=20% Similarity=0.217 Sum_probs=36.6
Q ss_pred CCcEEEecCccccHHHHHHHHHHh---CCCCCCCC---CCCchhhhhHHHhhhhcc
Q psy2902 404 INDIILVGGMTRMPKVQEKVKEFF---GKDPRRDI---NPDEAVAVGAAIQGSVLS 453 (945)
Q Consensus 404 i~~ViLvGG~s~~p~v~~~l~~~f---g~~~~~~~---~p~~avA~GAa~~a~~~~ 453 (945)
++.|+|+||-+...++++.|.+.+ +.++..+. -.|.+++.|+|.+....+
T Consensus 246 ~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~ 301 (535)
T PRK09605 246 KDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKA 301 (535)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHc
Confidence 568999999999999999999665 44444332 346788888886554333
No 201
>KOG0719|consensus
Probab=88.09 E-value=0.26 Score=49.41 Aligned_cols=61 Identities=33% Similarity=0.523 Sum_probs=49.0
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhcccc
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAG 645 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g 645 (945)
.-++.+|.+...++....++|+..+ ++...+..+|.....+|.+|+|+++|++||.-|...
T Consensus 25 ~a~~~eIrkAY~klal~~HPDk~~e---------ed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 25 DATDKEIRKAYHKLALRLHPDKNHE---------EDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred cCCHHHHHHHHHHHHHHhCCCcchh---------hhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence 4679999999999999999998642 333345567888889999999999999999876553
No 202
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=88.08 E-value=45 Score=36.53 Aligned_cols=40 Identities=33% Similarity=0.354 Sum_probs=28.2
Q ss_pred HcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcc
Q psy2902 229 IAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGT 269 (945)
Q Consensus 229 ~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT 269 (945)
..|++ +.+-++..|||++-.........++++.+-+|.|-
T Consensus 105 ~~~~P-v~veNDan~aalaE~~~g~~~~~~~~~~i~~gtGI 144 (314)
T COG1940 105 RLGLP-VFVENDANAAALAEAWFGAGRGIDDVVYITLGTGI 144 (314)
T ss_pred HHCCC-EEEecHHHHHHHHHHHhCCCCCCCCEEEEEEccce
Confidence 34555 57899999999987665443445678888888763
No 203
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=87.03 E-value=54 Score=36.30 Aligned_cols=92 Identities=17% Similarity=0.144 Sum_probs=53.9
Q ss_pred CCCcEEEEc-CCCCCHHHH--HHHHHHHHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEe
Q psy2902 203 EITEAVITV-PAYFNDAQR--QATKDAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIAD 279 (945)
Q Consensus 203 ~~~~~VitV-Pa~~~~~qr--~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~ 279 (945)
+++.+.+|. |..|+--.. ..-+-.|...+++. .-++.-+|-+++..+......+ |++=+-||+|.+.. .
T Consensus 70 did~Iavt~GPGl~~~LrVG~~~Ak~LA~a~~~Pl-igV~HlegHi~a~~l~~~~~~P---l~LlVSGGhT~l~~--~-- 141 (345)
T PTZ00340 70 DISLICYTKGPGMGAPLSVGAVVARTLSLLWGKPL-VGVNHCVAHIEMGRLVTGAENP---VVLYVSGGNTQVIA--Y-- 141 (345)
T ss_pred HCCEEEEecCCCcHhhHHHHHHHHHHHHHHcCCCE-eecchHHHHHHHHhhccCCCCC---eEEEEeCCceEEEE--e--
Confidence 356677777 776654332 22244445556553 4567777766655443322223 45557788888775 2
Q ss_pred ecCCceEEEEEecCCCCCchHHHHHH
Q psy2902 280 VDGEKQFEVLSTNGDTFLGGEDFDQR 305 (945)
Q Consensus 280 ~~~~~~~~vl~~~~~~~lGG~~iD~~ 305 (945)
....+++++..-|.. -|+.||+.
T Consensus 142 --~~~~~~ilG~T~Dda-~Gea~DKv 164 (345)
T PTZ00340 142 --SEHRYRIFGETIDIA-VGNCLDRF 164 (345)
T ss_pred --cCCeEEEEEeecccc-hhHHHHHH
Confidence 335689988887665 56777754
No 204
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=86.68 E-value=70 Score=37.21 Aligned_cols=83 Identities=16% Similarity=0.111 Sum_probs=59.2
Q ss_pred EEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHH-HHHHHHhCCCCCCCC-CCCchhhhhH
Q psy2902 368 LKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQ-EKVKEFFGKDPRRDI-NPDEAVAVGA 445 (945)
Q Consensus 368 ~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~-~~l~~~fg~~~~~~~-~p~~avA~GA 445 (945)
....-.++...++..+++++..+..-+.+... .+.+.+.||.+..-.+. +.+.+-+..++.+.+ -.|...|.||
T Consensus 254 ~~~~~~diAasaQ~~lE~l~l~~~~~~~~~~g----~~~L~~AGGVAlNv~~N~~~l~~~~f~dlfV~Pa~gD~G~AvGA 329 (555)
T COG2192 254 STERAADIAASAQAYLEELVLEMLRYLREETG----EDNLALAGGVALNVKANGKLLRRGLFEDLFVQPAMGDAGLAVGA 329 (555)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhC----ccceEEccceeeeeeehHhHhhcccCceeEecCCCCCcchHHHH
Confidence 44455667777777777777666665554322 47899999999888887 777777776775443 4577899999
Q ss_pred HHhhhhccC
Q psy2902 446 AIQGSVLSG 454 (945)
Q Consensus 446 a~~a~~~~~ 454 (945)
|+++....+
T Consensus 330 Al~~~~~~~ 338 (555)
T COG2192 330 ALAVKRELG 338 (555)
T ss_pred HHHHHHHhc
Confidence 999976544
No 205
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=86.55 E-value=0.17 Score=46.89 Aligned_cols=58 Identities=19% Similarity=0.285 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcC---Cccce---------ecchh-HHHHHH
Q psy2902 186 AEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAG---LEVKR---------IINEP-TAAALA 247 (945)
Q Consensus 186 a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AG---l~~v~---------li~Ep-~AAAl~ 247 (945)
+..|+...+.|+...+.++..+.+++ .....+.+.++++.++ +.... ++.+| .|+|++
T Consensus 49 ~~~i~~a~~~AE~~~k~~i~~v~v~~----g~s~l~~i~~~~~~~~~~~v~v~~~~~~~~~~~~~~~p~~Asa~g 119 (120)
T PF14450_consen 49 SKAIKIAIEEAERLAKCEIGSVYVSI----GGSKLQNIEELIEKCGGMPVRVAGPNIVEGLPEIVLNPEYASAIG 119 (120)
T ss_dssp HHHHT--HHHHHHH-HHHH--S--TT----GGGGSTTHHHHHHHHHTS-EEE--GGGSET-HHHHT-GGGHHHHH
T ss_pred HHHHHHHHHHHHHHhCCeeeEEEecC----chhHHHhHHHHHHHhCCCcEEEccccccCcchhhccCceeeEEEe
Confidence 34455555556655444555555554 4445566667777766 65555 78888 888775
No 206
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=86.20 E-value=5.4 Score=40.14 Aligned_cols=30 Identities=40% Similarity=0.396 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHcCCccceecchhHHHHHH
Q psy2902 218 AQRQATKDAGRIAGLEVKRIINEPTAAALA 247 (945)
Q Consensus 218 ~qr~~l~~Aa~~AGl~~v~li~Ep~AAAl~ 247 (945)
...+.+.++++.|||++..++.+|.|++.+
T Consensus 157 ~~v~n~~~~v~~agl~v~~i~~~~~A~~~a 186 (187)
T smart00842 157 SAIQNLEKCVERAGLEVDGIVLEPLASAEA 186 (187)
T ss_pred HHHHHHHHHHHHcCCchhhEEehhhhhEec
Confidence 457888999999999999999999998764
No 207
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=86.16 E-value=3 Score=44.20 Aligned_cols=57 Identities=19% Similarity=0.371 Sum_probs=45.5
Q ss_pred CCcEEEecC--ccccH-HHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhccCCCCceEEE
Q psy2902 404 INDIILVGG--MTRMP-KVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLL 462 (945)
Q Consensus 404 i~~ViLvGG--~s~~p-~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~~~~~~~~~~ 462 (945)
...|+|+|- +++.| .+++.|++.|..++.. +. ....|.|+|+.|.-+.+..++++-.
T Consensus 263 ~~~IvLSGs~g~~r~~~~v~~~I~~~L~~~V~~-L~-~ksAA~G~AiIA~dI~gGk~~iLGi 322 (326)
T TIGR03281 263 EAGVVLAGSGGTLREPINFSGKIKRVLSCKVLV-LD-SESAAIGLALIAEDIFSGKREILGI 322 (326)
T ss_pred CCcEEEeCcchhccCchHHHHHHHHHhCCCeEE-ec-chhhhhhHHHHHHHHhCCcceEeee
Confidence 358999997 99999 9999999999866653 22 2789999999998888766666533
No 208
>KOG0681|consensus
Probab=86.09 E-value=0.61 Score=52.58 Aligned_cols=48 Identities=23% Similarity=0.471 Sum_probs=41.0
Q ss_pred CCcEEEecCccccHHHHHHHHHHh------CC--CCCCCCCCCchhhhhHHHhhhh
Q psy2902 404 INDIILVGGMTRMPKVQEKVKEFF------GK--DPRRDINPDEAVAVGAAIQGSV 451 (945)
Q Consensus 404 i~~ViLvGG~s~~p~v~~~l~~~f------g~--~~~~~~~p~~avA~GAa~~a~~ 451 (945)
++.|+|+||.|.+|.+.+.|...+ |. .+....||...+=+||+.+|+.
T Consensus 559 V~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 559 VSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred hhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 789999999999999999998776 32 3456789999999999999974
No 209
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=85.90 E-value=6.2 Score=43.02 Aligned_cols=52 Identities=31% Similarity=0.542 Sum_probs=37.7
Q ss_pred CCCCcEEEecCccccHHHHHHHHHHhCC----CCCCCCCC----CchhhhhHHHhhhhccC
Q psy2902 402 SDINDIILVGGMTRMPKVQEKVKEFFGK----DPRRDINP----DEAVAVGAAIQGSVLSG 454 (945)
Q Consensus 402 ~~i~~ViLvGG~s~~p~v~~~l~~~fg~----~~~~~~~p----~~avA~GAa~~a~~~~~ 454 (945)
.+.+.|+|+|-.+++|-+.+.+++.|+. ++. ...+ ...+|.|||+.|.-+.|
T Consensus 259 ~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~-~l~~~~~~aKeaA~GaAiIA~glaG 318 (343)
T PF07318_consen 259 PDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVR-KLEGLARKAKEAAQGAAIIANGLAG 318 (343)
T ss_pred CCCCEEEEeccccccHHHHHHHHHHHHhhccccee-ecccccccchhhhhhHHHHhhhhhc
Confidence 3568899999999999988888777732 332 2222 23589999999977766
No 210
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=85.73 E-value=60 Score=35.61 Aligned_cols=44 Identities=20% Similarity=0.408 Sum_probs=32.9
Q ss_pred CCCcEEEecCccccHHHHHHHHHHh---CCCCCCCC---CCCchhhhhHH
Q psy2902 403 DINDIILVGGMTRMPKVQEKVKEFF---GKDPRRDI---NPDEAVAVGAA 446 (945)
Q Consensus 403 ~i~~ViLvGG~s~~p~v~~~l~~~f---g~~~~~~~---~p~~avA~GAa 446 (945)
.++.|+|+||.+...++++.|.+.+ +.++..+. -.|.++++|+|
T Consensus 259 ~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~a 308 (314)
T TIGR03723 259 GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAA 308 (314)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHH
Confidence 3578999999999999999999987 54443322 23567777765
No 211
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=85.67 E-value=3.3 Score=44.81 Aligned_cols=77 Identities=23% Similarity=0.305 Sum_probs=42.7
Q ss_pred HHHHHHHHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchH
Q psy2902 221 QATKDAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGE 300 (945)
Q Consensus 221 ~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~ 300 (945)
..+.+.-+..|+++-.+=.|-+|...+.+...........+|+|+|||++.+++++- ....... ...+|.-
T Consensus 75 ~~~~~i~~~tGi~i~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~-----~~~~~~~----Sl~lG~v 145 (285)
T PF02541_consen 75 EFLDRIKKETGIDIEIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFEN-----GKVVFSQ----SLPLGAV 145 (285)
T ss_dssp HHHHHHHHHHSS-EEEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEET-----TEEEEEE----EES--HH
T ss_pred HHHHHHHHHhCCceEEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEEC-----CeeeEee----eeehHHH
Confidence 344555567798865444444444333333222234567899999999999999862 2222221 2346877
Q ss_pred HHHHHH
Q psy2902 301 DFDQRI 306 (945)
Q Consensus 301 ~iD~~l 306 (945)
.+.+.+
T Consensus 146 rl~e~~ 151 (285)
T PF02541_consen 146 RLTERF 151 (285)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766655
No 212
>KOG0691|consensus
Probab=85.61 E-value=0.71 Score=49.34 Aligned_cols=63 Identities=37% Similarity=0.521 Sum_probs=51.1
Q ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCC
Q psy2902 575 SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDP 648 (945)
Q Consensus 575 ~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~ 648 (945)
...|..||...........++|+ |+.+-- +..+|...++||++|+|+++|+.||.++..+..+
T Consensus 15 ~~at~~eIkKaYr~kaL~~HPDK---------Np~dP~--A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~ 77 (296)
T KOG0691|consen 15 EDATDAEIKKAYRKKALQYHPDK---------NPGDPQ--AAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSA 77 (296)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCC---------CCCChH--HHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccc
Confidence 34678899888888877788884 544444 6789999999999999999999999999887553
No 213
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=85.19 E-value=63 Score=35.32 Aligned_cols=95 Identities=20% Similarity=0.150 Sum_probs=49.9
Q ss_pred CCCcEEEEc-CCCCCHHHHH--HHHHHHHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEe
Q psy2902 203 EITEAVITV-PAYFNDAQRQ--ATKDAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIAD 279 (945)
Q Consensus 203 ~~~~~VitV-Pa~~~~~qr~--~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~ 279 (945)
+++.+++|. |..|+-...- .-+..+...+++. ..++.-+|-|++...... ......+++=+-||++.+..++
T Consensus 69 did~iav~~GPG~~tglrvg~~~Ak~la~~~~~p~-~~v~hl~~ha~~a~~~s~-~~~~~~l~l~vsGG~t~l~~~~--- 143 (305)
T TIGR00329 69 EIDLIAYTQGPGLGGSLRVGATFARSLALSLDKPL-IGVNHLLGHIYAPRLDTN-ILQFPFVSLLVSGGHTQIIAVK--- 143 (305)
T ss_pred HCCEEEEecCCCchhhHHHHHHHHHHHHHHhCCCE-eecccHHHHHHHhhhhcC-CCCCCcEEEEEcCCceEEEEEe---
Confidence 366777887 8888753322 2233344446654 344555554443322211 0012234444445788777765
Q ss_pred ecCCceEEEEEecCCCCCchHHHHHH
Q psy2902 280 VDGEKQFEVLSTNGDTFLGGEDFDQR 305 (945)
Q Consensus 280 ~~~~~~~~vl~~~~~~~lGG~~iD~~ 305 (945)
....+++++..- ..--|+.||..
T Consensus 144 --~~~~~~~l~~t~-d~S~GrlfD~v 166 (305)
T TIGR00329 144 --GIGDYEVLGETL-DDAVGEAFDKV 166 (305)
T ss_pred --CCCcEEEeeeec-CchhhHHHHHH
Confidence 345788887744 33456666643
No 214
>PRK09698 D-allose kinase; Provisional
Probab=84.98 E-value=63 Score=35.15 Aligned_cols=44 Identities=9% Similarity=0.007 Sum_probs=28.5
Q ss_pred HcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEE
Q psy2902 229 IAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSII 275 (945)
Q Consensus 229 ~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~ 275 (945)
..|++ +.+.++..|+|++-..... ....+++++.+|.| .-.+++
T Consensus 103 ~~~~p-v~v~NDa~aaa~~E~~~~~-~~~~~~~~v~lgtG-IG~giv 146 (302)
T PRK09698 103 TLNCP-VFFSRDVNLQLLWDVKENN-LTQQLVLGAYLGTG-MGFAVW 146 (302)
T ss_pred HhCCC-EEEcchHhHHHHHHHHhcC-CCCceEEEEEecCc-eEEEEE
Confidence 35776 6799999999886533221 23457888888876 444444
No 215
>KOG2824|consensus
Probab=84.84 E-value=0.85 Score=47.26 Aligned_cols=45 Identities=27% Similarity=0.529 Sum_probs=25.9
Q ss_pred ccCCCCCccccccCcCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEE
Q psy2902 717 DICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKV 767 (945)
Q Consensus 717 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~ 767 (945)
..|..|+|.+.. +|..|+|+=++...-.-...-.+|..|+-.|-+
T Consensus 230 ~~C~~CGg~rFl------pC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLv 274 (281)
T KOG2824|consen 230 GVCESCGGARFL------PCSNCHGSCKVHEEEEDDGGVLRCLECNENGLV 274 (281)
T ss_pred CcCCCcCCcceE------ecCCCCCceeeeeeccCCCcEEECcccCCCCce
Confidence 567777777765 577777776663211111123457777766654
No 216
>PHA03102 Small T antigen; Reviewed
Probab=84.64 E-value=0.69 Score=44.36 Aligned_cols=55 Identities=13% Similarity=0.029 Sum_probs=44.0
Q ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCC
Q psy2902 578 TEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGID 647 (945)
Q Consensus 578 ~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~ 647 (945)
|.++|.+..+++....++|+.- +..++.++++||++|+++.++..||.+++....
T Consensus 20 s~~eIKkAYr~la~~~HPDkgg---------------~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~ 74 (153)
T PHA03102 20 NLPLMRKAYLRKCLEFHPDKGG---------------DEEKMKELNTLYKKFRESVKSLRDLDGEEDSSS 74 (153)
T ss_pred CHHHHHHHHHHHHHHHCcCCCc---------------hhHHHHHHHHHHHHHhhHHHhccccccCCcccc
Confidence 7888888888888888888621 124677889999999999999999998876543
No 217
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=84.13 E-value=4 Score=39.65 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=18.8
Q ss_pred eeeeEEEEeecCCCCCeEEEEcC
Q psy2902 783 RNKTLEVKIPAGIENNMRIRSTG 805 (945)
Q Consensus 783 ~~~~l~v~ip~G~~~g~~i~~~g 805 (945)
..+.|.++||||...|..-+++|
T Consensus 78 ~IPEl~~ei~pg~~~g~itTVEG 100 (160)
T smart00709 78 SIPELDLEIPPGPLGGFITTVEG 100 (160)
T ss_pred EeeeeeEEecCCCCCcEEEehHH
Confidence 36778899999998888888865
No 218
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=83.53 E-value=17 Score=40.73 Aligned_cols=82 Identities=23% Similarity=0.283 Sum_probs=58.0
Q ss_pred EEEcHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCc-EEEecCccccHHHHHHHHHHhCCC-CCC-CCCCCchhhh
Q psy2902 368 LKITRAKLELLVDELITRTI-EPCRIAIKDAGIKVSDIND-IILVGGMTRMPKVQEKVKEFFGKD-PRR-DINPDEAVAV 443 (945)
Q Consensus 368 ~~itr~~~e~~~~~~i~~i~-~~i~~~l~~~~~~~~~i~~-ViLvGG~s~~p~v~~~l~~~fg~~-~~~-~~~p~~avA~ 443 (945)
..-.+.++-..++..+++++ ..++.++++.+. +. |.|.||.+..-.+...|.+..+.+ +.+ +.-.|..+|+
T Consensus 131 ~~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g~-----~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~ai 205 (360)
T PF02543_consen 131 LTQRHADLAASAQKVLEEIVLHLVRHLLERTGI-----DNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAI 205 (360)
T ss_dssp EESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHH
Confidence 45677888888888887765 455666777663 46 999999999999999998885543 433 3445789999
Q ss_pred hHHHhhhhccC
Q psy2902 444 GAAIQGSVLSG 454 (945)
Q Consensus 444 GAa~~a~~~~~ 454 (945)
|||+++....+
T Consensus 206 GaA~~~~~~~~ 216 (360)
T PF02543_consen 206 GAALYAWHELG 216 (360)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 99999986554
No 219
>PLN02666 5-oxoprolinase
Probab=83.43 E-value=7 Score=50.73 Aligned_cols=76 Identities=13% Similarity=0.148 Sum_probs=47.0
Q ss_pred EcHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCC-CCCCCCCCchhhhhHHH
Q psy2902 370 ITRAKLELLVDELITRT-IEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKD-PRRDINPDEAVAVGAAI 447 (945)
Q Consensus 370 itr~~~e~~~~~~i~~i-~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~-~~~~~~p~~avA~GAa~ 447 (945)
++-++...-+..+.+.. .+.|..+....+.++.+. .++..||++ |...-.|.+.+|.+ +..+.+|....|+|+++
T Consensus 454 ~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~~-~l~afGGag--p~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ 530 (1275)
T PLN02666 454 MSVEEVALGFVRVANEAMCRPIRQLTEMKGYETANH-ALACFGGAG--PQHACAIARALGMSEVFVHRYCGILSAYGMGL 530 (1275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc-eEEEecCcH--HHHHHHHHHHcCCCEEEeCCCccHHHHHHHHh
Confidence 44455554444444333 344444444555544322 344445544 88889999999988 66778888899999976
Q ss_pred h
Q psy2902 448 Q 448 (945)
Q Consensus 448 ~ 448 (945)
.
T Consensus 531 a 531 (1275)
T PLN02666 531 A 531 (1275)
T ss_pred h
Confidence 3
No 220
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=82.55 E-value=47 Score=36.33 Aligned_cols=216 Identities=19% Similarity=0.254 Sum_probs=104.8
Q ss_pred eeChhhHHHHHHHHHHHHHHHHh---CC---CCCcEEEEcCCCCCHH-HHHHH--HHHHHHcCCccceecchhHHHHHHh
Q psy2902 178 KLAPPQISAEVLRKMKKTAEDYL---GG---EITEAVITVPAYFNDA-QRQAT--KDAGRIAGLEVKRIINEPTAAALAF 248 (945)
Q Consensus 178 ~~~~~ev~a~~L~~l~~~a~~~~---~~---~~~~~VitVPa~~~~~-qr~~l--~~Aa~~AGl~~v~li~Ep~AAAl~~ 248 (945)
.+-|+..+..-.+.+-...++.+ +. +++-+.+|.=...... ..-++ +..|...+.+ +.-++...+-.++.
T Consensus 40 GVvPe~Asr~H~e~i~~li~~al~eA~~~~~dID~IA~T~gPGL~gaL~VG~~~Ak~LA~a~~kP-li~VnH~~gHi~a~ 118 (342)
T COG0533 40 GVVPELASRHHVENIPPLIEEALAEAGVSLEDIDAIAVTAGPGLGGALLVGATAAKALALALNKP-LIPVNHLEGHIEAA 118 (342)
T ss_pred CcCccHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEecCCCchhHHHHHHHHHHHHHHHhCCC-EeecchHHHHHHHH
Confidence 35677777766665555444333 33 3555566652233222 21111 2222333433 33566666666555
Q ss_pred ccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHH
Q psy2902 249 GLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIA 328 (945)
Q Consensus 249 ~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~ 328 (945)
...... .-. .+..=+-||.|.+..++ ..+.+++++..-|.. -|+.||. +.+..++...-.+ .
T Consensus 119 ~l~~~~-~~p-~v~LlVSGGHTqli~~~-----~~g~y~ilGeTlDdA-~Gea~DK---------vAR~lGL~yPGGp-~ 180 (342)
T COG0533 119 RLETGL-AFP-PVALLVSGGHTQLIAVR-----GIGRYEVLGETLDDA-AGEAFDK---------VARLLGLGYPGGP-A 180 (342)
T ss_pred HhccCC-CCC-cEEEEEecCceEEEEEc-----CCCcEEEEeeechhh-hhHHHHH---------HHHHhCCCCCCcH-H
Confidence 444321 222 33333456666666554 447799988776554 3566653 2223333333332 1
Q ss_pred HHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEE------------------EEEcHHHHHHHHHH----HHHHH
Q psy2902 329 LQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLN------------------LKITRAKLELLVDE----LITRT 386 (945)
Q Consensus 329 ~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~------------------~~itr~~~e~~~~~----~i~~i 386 (945)
+.+.|++-. .. .+.+|...... ...+++ -.+..++.++++.. .++-+
T Consensus 181 ---Ie~lA~~G~------~~-~~~fP~~~~~~-~~~DfSFSGLkTa~~~~~~~~~~~~~~~~~d~~dia~sfQ~av~~~L 249 (342)
T COG0533 181 ---IEKLAKKGD------PD-AFEFPRPMVKG-KNLDFSFSGLKTAVLRLLKKLKQKEELNEEDKEDIAASFQEAVFDML 249 (342)
T ss_pred ---HHHHHhcCC------CC-ceeCCccccCC-CCcceehHhHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHHHH
Confidence 111121110 00 12222211000 000111 11223333334433 44555
Q ss_pred HHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhC
Q psy2902 387 IEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFG 428 (945)
Q Consensus 387 ~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg 428 (945)
.+...++|+..+. +.++++||-+....+|++++++..
T Consensus 250 ~~kt~rAl~~~~~-----~~lvi~GGVaaN~~LR~~l~~~~~ 286 (342)
T COG0533 250 VEKTERALKHTGK-----KELVIAGGVAANSRLREMLEEMCK 286 (342)
T ss_pred HHHHHHHHHHhCC-----CEEEEeccHHHhHHHHHHHHHHHH
Confidence 5566677776654 689999999999999999998773
No 221
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=82.54 E-value=79 Score=34.41 Aligned_cols=46 Identities=20% Similarity=0.179 Sum_probs=30.4
Q ss_pred HHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEE
Q psy2902 228 RIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSII 275 (945)
Q Consensus 228 ~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~ 275 (945)
+..|++ +.+.++..|||++-.........++++++.+|.|- -..++
T Consensus 94 ~~~~~p-V~ieNDa~aaalaE~~~g~~~~~~~~~~l~~gtGi-G~giv 139 (303)
T PRK13310 94 ARLGRD-VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTGV-GGGLV 139 (303)
T ss_pred HHHCCC-eEEeccHhHHHHHHhhhccccCCCcEEEEEecCce-EEEEE
Confidence 345776 67999999999875443322345678888888763 34443
No 222
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=81.85 E-value=1.4 Score=42.17 Aligned_cols=23 Identities=30% Similarity=0.814 Sum_probs=16.4
Q ss_pred ccCCCCCccccccCcCcccCCCCCCCceE
Q psy2902 717 DICKSCYGNGAKKGTSPISCFTCSGQGQV 745 (945)
Q Consensus 717 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~ 745 (945)
..|..|+|.+.. +|+.|+|+=++
T Consensus 100 ~~C~~Cgg~rfv------~C~~C~Gs~k~ 122 (147)
T cd03031 100 GVCEGCGGARFV------PCSECNGSCKV 122 (147)
T ss_pred CCCCCCCCcCeE------ECCCCCCcceE
Confidence 457777777765 57788777766
No 223
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=81.60 E-value=74 Score=33.47 Aligned_cols=44 Identities=11% Similarity=0.271 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccc
Q psy2902 372 RAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTR 415 (945)
Q Consensus 372 r~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ 415 (945)
++..+.+....+-.....|+..+++.......=..++++||.++
T Consensus 181 k~T~~aiqsG~v~g~~~~i~~~~~~~k~~~~~~~~~vltGg~~~ 224 (251)
T COG1521 181 KNTVEAIQSGVVYGYVGLIEGLLKEIKEELKGGDAVVLTGGLAK 224 (251)
T ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCchH
Confidence 45566666666666666666666654322212368999999874
No 224
>KOG0717|consensus
Probab=79.88 E-value=0.73 Score=50.99 Aligned_cols=58 Identities=31% Similarity=0.409 Sum_probs=47.2
Q ss_pred CcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccc
Q psy2902 577 LTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHA 644 (945)
Q Consensus 577 ~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~ 644 (945)
-++.+|....++++..+++|+. .....++...|..|..||++|||+..|+-||...++
T Consensus 20 a~d~eik~~YRklALq~HPDkn----------pd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreq 77 (508)
T KOG0717|consen 20 ADDDEIKKNYRKLALQYHPDKN----------PDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQ 77 (508)
T ss_pred CCHHHHHHHHHHHHHhhCCCCC----------CccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHH
Confidence 4678999999999988898882 233334567888889999999999999999987774
No 225
>KOG2824|consensus
Probab=79.62 E-value=1.8 Score=44.91 Aligned_cols=38 Identities=34% Similarity=0.811 Sum_probs=29.6
Q ss_pred ccCCCCCCCceEeEeeceeeeeecCCCCCCceEEee--------cCCcccCCCceEe
Q psy2902 734 ISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIP--------HPCLDCNGIGRIK 782 (945)
Q Consensus 734 ~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~~--------~~c~~c~G~g~~~ 782 (945)
..|..|+|.+.+ +|..|+|.-++.. ..|..|+-+|+++
T Consensus 230 ~~C~~CGg~rFl-----------pC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLvr 275 (281)
T KOG2824|consen 230 GVCESCGGARFL-----------PCSNCHGSCKVHEEEEDDGGVLRCLECNENGLVR 275 (281)
T ss_pred CcCCCcCCcceE-----------ecCCCCCceeeeeeccCCCcEEECcccCCCCcee
Confidence 468888888887 7888888887755 4588888888765
No 226
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.29 E-value=1.2 Score=55.69 Aligned_cols=32 Identities=25% Similarity=0.779 Sum_probs=22.8
Q ss_pred cCCCCCCCceEeEeecee-eeeecCCCCCCceE
Q psy2902 735 SCFTCSGQGQVRMQQGFF-SIQQTCPKCQGAGK 766 (945)
Q Consensus 735 ~C~~C~G~G~~~~~~~~~-~~~~~C~~C~G~g~ 766 (945)
.|+.|.|.|.+....++. .+..+|+.|+|+++
T Consensus 738 ~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~ 770 (924)
T TIGR00630 738 RCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRY 770 (924)
T ss_pred CCCCCccceEEEEEccCCCCcccCCCCcCCcee
Confidence 477777777776555443 35678999988876
No 227
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=78.83 E-value=1.7 Score=47.07 Aligned_cols=43 Identities=28% Similarity=0.452 Sum_probs=27.7
Q ss_pred CccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEE
Q psy2902 232 LEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIE 276 (945)
Q Consensus 232 l~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~ 276 (945)
.++..+.+-|.|.+..... ......+++++|+||.|||++++.
T Consensus 53 ~Pv~ti~SGPaas~~ga~~--~~~g~~~~i~vDmGGTTtDi~~i~ 95 (290)
T PF01968_consen 53 RPVETILSGPAASVIGAAA--RLTGLENAIVVDMGGTTTDIALIK 95 (290)
T ss_dssp SGGCTB--SSHHHHHHHHH----HT-SSEEEEEE-SS-EEEEEEE
T ss_pred hHHHHhhcCHHHhHhhhhh--hcCCCCCEEEEeCCCCEEEEEEEE
Confidence 3455677888887776655 113456799999999999999996
No 228
>PRK00976 hypothetical protein; Provisional
Probab=78.62 E-value=11 Score=41.01 Aligned_cols=57 Identities=26% Similarity=0.434 Sum_probs=43.2
Q ss_pred CCCcEEEecCccccH--HHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhccCCCCceEE
Q psy2902 403 DINDIILVGGMTRMP--KVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSGDRKDLLL 461 (945)
Q Consensus 403 ~i~~ViLvGG~s~~p--~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~~~~~~~~~ 461 (945)
+++.|+|-||.|+.+ .+.+.+++.+...+ ..-...+.++|||++|....+..++++-
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~~~~--a~LG~dAGaiGAA~iA~~i~~G~~~ilg 321 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLDKKV--LVLGKESAAIGLALIARDIFNGKKDILG 321 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhcccc--cccCCchHHHHHHHHHHHHhCCCceeee
Confidence 467899999999998 78888888875432 2224589999999999877766666543
No 229
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=77.94 E-value=1.9 Score=51.58 Aligned_cols=33 Identities=24% Similarity=0.707 Sum_probs=23.9
Q ss_pred ccCCCCCCCceEeEeecee-eeeecCCCCCCceE
Q psy2902 734 ISCFTCSGQGQVRMQQGFF-SIQQTCPKCQGAGK 766 (945)
Q Consensus 734 ~~C~~C~G~G~~~~~~~~~-~~~~~C~~C~G~g~ 766 (945)
-.|..|.|.|.+.+...|. .+-.+|+.|+|+.+
T Consensus 731 GRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRY 764 (935)
T COG0178 731 GRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRY 764 (935)
T ss_pred cCCccccCCceEEEEeccCCCceeeCCCcCCccc
Confidence 3578888888776665553 45678999999875
No 230
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=77.60 E-value=0.76 Score=37.02 Aligned_cols=54 Identities=37% Similarity=0.502 Sum_probs=41.1
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHH
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYD 639 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d 639 (945)
..+.++|.+..+.+....++|+..... ......+..+++||++|+++++++.||
T Consensus 11 ~~~~~eik~~y~~l~~~~HPD~~~~~~----------~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 11 DASDEEIKKAYRRLSKQYHPDKNSGDE----------AEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp TSSHHHHHHHHHHHHHHTSTTTGTSTH----------HHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred CCCHHHHHHHHHhhhhccccccchhhh----------hhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 467889999999998888888743221 112235667789999999999999997
No 231
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=75.03 E-value=8.5 Score=38.64 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=18.7
Q ss_pred eeeeEEEEeecC-CCCCeEEEEcC
Q psy2902 783 RNKTLEVKIPAG-IENNMRIRSTG 805 (945)
Q Consensus 783 ~~~~l~v~ip~G-~~~g~~i~~~g 805 (945)
..+.|.++|||| +..|..-+++|
T Consensus 77 ~IPEl~lei~pg~~~~G~iTTVEG 100 (192)
T TIGR00310 77 RIPELGLDIEPGPTSGGFITNLEG 100 (192)
T ss_pred EccceEEEECCCccCCceEEeeHh
Confidence 366788999999 78998888865
No 232
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=74.72 E-value=8.1 Score=43.07 Aligned_cols=73 Identities=22% Similarity=0.224 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCC-CCC----CCCCCCchhhhhHHHhhh
Q psy2902 376 ELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK-DPR----RDINPDEAVAVGAAIQGS 450 (945)
Q Consensus 376 e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~-~~~----~~~~p~~avA~GAa~~a~ 450 (945)
++++.-+.+-+...|.+.++..... ++.|+++||+++.|.+.+.|++.++. ++. ...+|+.-=|.+-|++|.
T Consensus 260 ~D~~aTlt~~TA~sI~~~i~~~~~~---~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aFA~La~ 336 (364)
T PF03702_consen 260 EDILATLTEFTAQSIADAIRRFPPQ---PDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAFAWLAY 336 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-TT----EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC---CceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHHHHHHH
Confidence 4445555555566666667665433 68999999999999999999999964 332 123444433444566665
Q ss_pred h
Q psy2902 451 V 451 (945)
Q Consensus 451 ~ 451 (945)
.
T Consensus 337 ~ 337 (364)
T PF03702_consen 337 R 337 (364)
T ss_dssp H
T ss_pred H
Confidence 4
No 233
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=74.59 E-value=7.8 Score=43.19 Aligned_cols=55 Identities=22% Similarity=0.151 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHcCC--ccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEE
Q psy2902 219 QRQATKDAGRIAGL--EVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEI 277 (945)
Q Consensus 219 qr~~l~~Aa~~AGl--~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~ 277 (945)
-.+.+.++.+.-++ .++.++++.+|+.++-.... .++++-+=+|.||=-+.+..+
T Consensus 183 vv~~l~e~l~~r~~pi~v~aviNDttgtlla~~yt~----~~~~iG~IfGTGtN~~y~e~~ 239 (466)
T COG5026 183 VVRLLQEALSARNLPIRVVAVINDTTGTLLASVYTS----SETIIGIIFGTGTNGCYCEPK 239 (466)
T ss_pred HHHHHHHHHHhcCCceEEEEEecccHHHHHHHhhcC----CCCeEEEEEecCccceEEeec
Confidence 34555566655555 45678999999887654332 234444456666655555443
No 234
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=72.31 E-value=14 Score=41.18 Aligned_cols=68 Identities=18% Similarity=0.256 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCC----CCCCCchhhhhHHHhhhh
Q psy2902 381 ELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRR----DINPDEAVAVGAAIQGSV 451 (945)
Q Consensus 381 ~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~----~~~p~~avA~GAa~~a~~ 451 (945)
-+.+-+...|.+.+.... ...+.|+++||+++.|++.+.|++.++.++.. ..+++.-=|..-|++|..
T Consensus 267 Tlt~~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~~~v~~~~~~G~~~da~EA~aFA~La~~ 338 (365)
T PRK09585 267 TLTELTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLPTEVATTDALGIDGDAKEALAFAWLAVR 338 (365)
T ss_pred HHHHHHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcCCcccCHHHcCCChhHHHHHHHHHHHHH
Confidence 334444455556665432 22468999999999999999999999643332 234443334445666643
No 235
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=70.86 E-value=61 Score=33.99 Aligned_cols=103 Identities=21% Similarity=0.267 Sum_probs=61.6
Q ss_pred eEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEE--EcCCCCCHHHHHHHHHHHHHcCCccceecchhHHHHHH
Q psy2902 170 AWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVI--TVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALA 247 (945)
Q Consensus 170 ~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~Vi--tVPa~~~~~qr~~l~~Aa~~AGl~~v~li~Ep~AAAl~ 247 (945)
+.+.+.+..++|. .+....+.-+..-.-.-+..+..++. .+|.+|+ --+++++.+..+|.+. .+++-..||.+.
T Consensus 81 vavAvQDHG~~p~-~SnR~~RF~~~~~~L~~g~~~~~~~y~~~~P~~~T--Rm~av~~~~~~~~~~~-~vmDTg~AAvlG 156 (254)
T PF08735_consen 81 VAVAVQDHGFSPG-QSNRIFRFELWREFLEEGGRPESFVYADDPPPYFT--RMRAVRESLGGAGYDE-VVMDTGPAAVLG 156 (254)
T ss_pred eEEEecccCCCCC-CccHHHHHHHHHHHHhcCCCHHHeeecCCCcHHHH--HHHHHHHHhccCCCCc-eEecCHHHHHhh
Confidence 4566666666665 44444443221111122445667777 7787754 2344555555555555 455666666666
Q ss_pred hccCCCCCCCceEEEEEeCCcceEEEEEE
Q psy2902 248 FGLDKSGKSDRNIVVYDLGGGTFDVSIIE 276 (945)
Q Consensus 248 ~~~~~~~~~~~~vlVvD~GggT~dvsv~~ 276 (945)
...+........++++|+|-|.|-.+++.
T Consensus 157 al~d~~v~~~~~~~~vniGN~HTlaa~v~ 185 (254)
T PF08735_consen 157 ALCDPEVSSREGIIVVNIGNGHTLAALVK 185 (254)
T ss_pred hhcChhhhccCCeEEEEeCCccEEEEEEe
Confidence 66555434467799999999999888884
No 236
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=70.35 E-value=2.7 Score=52.91 Aligned_cols=32 Identities=25% Similarity=0.777 Sum_probs=21.2
Q ss_pred cCCCCCCCceEeEeecee-eeeecCCCCCCceE
Q psy2902 735 SCFTCSGQGQVRMQQGFF-SIQQTCPKCQGAGK 766 (945)
Q Consensus 735 ~C~~C~G~G~~~~~~~~~-~~~~~C~~C~G~g~ 766 (945)
.|+.|.|.|.+....+++ .+..+|+.|+|+.+
T Consensus 740 ~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~ 772 (943)
T PRK00349 740 RCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRY 772 (943)
T ss_pred CCCcccccceEEEEeccCCCccccCccccCccc
Confidence 477777777765544443 34567888888876
No 237
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=68.70 E-value=4.6 Score=35.61 Aligned_cols=18 Identities=22% Similarity=0.619 Sum_probs=16.3
Q ss_pred eEEEEcCccceEEEEEeC
Q psy2902 73 IIGIDLGTTNSCVSIIEG 90 (945)
Q Consensus 73 viGID~GTt~s~va~~~~ 90 (945)
++|||+|.|.+++|+++.
T Consensus 3 ilgiD~Ggt~i~~a~~d~ 20 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDE 20 (99)
T ss_pred EEEEccCCCeEEEEEECC
Confidence 799999999999999864
No 238
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=68.57 E-value=5 Score=48.47 Aligned_cols=41 Identities=29% Similarity=0.472 Sum_probs=29.5
Q ss_pred eecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEE
Q psy2902 236 RIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEI 277 (945)
Q Consensus 236 ~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~ 277 (945)
.+.+=|.|..++.........+ +++++||||.|||++++.-
T Consensus 257 tI~SGPAagvvGAa~ltg~~~g-~~i~~DmGGTStDva~i~~ 297 (674)
T COG0145 257 TILSGPAAGVVGAAYLTGLKAG-NAIVFDMGGTSTDVALIID 297 (674)
T ss_pred eEeeccHHHHHHHHHhcccccC-CEEEEEcCCcceeeeeeec
Confidence 3677788877665544221233 6999999999999999873
No 239
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=68.12 E-value=5.1 Score=38.38 Aligned_cols=38 Identities=34% Similarity=0.744 Sum_probs=29.7
Q ss_pred cccCCCCCCCceEeEeeceeeeeecCCCCCCceEEee---------cCCcccCCCceE
Q psy2902 733 PISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIP---------HPCLDCNGIGRI 781 (945)
Q Consensus 733 ~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~~---------~~c~~c~G~g~~ 781 (945)
...|..|+|.+.+ +|..|+|+-++.. ..|..|+-+|++
T Consensus 99 ~~~C~~Cgg~rfv-----------~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~ 145 (147)
T cd03031 99 GGVCEGCGGARFV-----------PCSECNGSCKVFAENATAAGGFLRCPECNENGLV 145 (147)
T ss_pred CCCCCCCCCcCeE-----------ECCCCCCcceEEeccCcccccEEECCCCCccccc
Confidence 4569999999887 7999999987632 358888877765
No 240
>PTZ00288 glucokinase 1; Provisional
Probab=67.39 E-value=30 Score=39.31 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=17.8
Q ss_pred CceEEEEcCccceEEEEEeC
Q psy2902 71 SKIIGIDLGTTNSCVSIIEG 90 (945)
Q Consensus 71 ~~viGID~GTt~s~va~~~~ 90 (945)
.+++|+|+|-|++++++++.
T Consensus 26 ~~~~~~DiGgt~~R~~~~~~ 45 (405)
T PTZ00288 26 PIFVGCDVGGTNARVGFARE 45 (405)
T ss_pred CeEEEEEecCCceEEEEEec
Confidence 45899999999999999865
No 241
>KOG0550|consensus
Probab=67.09 E-value=4.1 Score=44.88 Aligned_cols=27 Identities=37% Similarity=0.503 Sum_probs=23.2
Q ss_pred ccchhhhhhhhhccChhHHHHHHHHhc
Q psy2902 616 TKKSLKIKEAYEVLSDSEKRIIYDQYG 642 (945)
Q Consensus 616 ~~~~~~~~~~~~~l~~~~k~~~~d~~~ 642 (945)
..+|.++.++|.+++|++++.-||...
T Consensus 414 E~kFkevgeAy~il~d~~kr~r~dsg~ 440 (486)
T KOG0550|consen 414 EAKFKEVGEAYTILSDPMKRVRFDSGQ 440 (486)
T ss_pred HHHHHHHHHHHHHhcCHHHHhhccccc
Confidence 347899999999999999999998643
No 242
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=66.43 E-value=3.5 Score=54.91 Aligned_cols=34 Identities=26% Similarity=0.658 Sum_probs=26.9
Q ss_pred cccCCCCCCCceEeEeecee-eeeecCCCCCCceE
Q psy2902 733 PISCFTCSGQGQVRMQQGFF-SIQQTCPKCQGAGK 766 (945)
Q Consensus 733 ~~~C~~C~G~G~~~~~~~~~-~~~~~C~~C~G~g~ 766 (945)
.-.|+.|.|.|.+.+...++ .+..+|+.|+|+.+
T Consensus 1607 ~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~ 1641 (1809)
T PRK00635 1607 QGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRI 1641 (1809)
T ss_pred CCCCCCCccCceEEEecccCCCcccCCCCCCCcCC
Confidence 44699999999987666554 46788999999986
No 243
>TIGR00340 zpr1_rel ZPR1-related zinc finger protein. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.
Probab=65.28 E-value=12 Score=36.49 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=17.8
Q ss_pred eeeeEEEEeecCC-CCCeEEEEcC
Q psy2902 783 RNKTLEVKIPAGI-ENNMRIRSTG 805 (945)
Q Consensus 783 ~~~~l~v~ip~G~-~~g~~i~~~g 805 (945)
..+.|.++||||. +.|..=+++|
T Consensus 75 ~IPEl~lei~pg~~~~G~iTTVEG 98 (163)
T TIGR00340 75 RIPELGIKIEPGPASQGYISNIEG 98 (163)
T ss_pred EccceeEEecCCCcCCceEEehHh
Confidence 3667889999997 7887777754
No 244
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=64.58 E-value=86 Score=34.61 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=38.9
Q ss_pred CCCCCcEEEecCccccHHHHHHHHHHh-CCCCC----CCCCCCchhhhhHHHhhhhc
Q psy2902 401 VSDINDIILVGGMTRMPKVQEKVKEFF-GKDPR----RDINPDEAVAVGAAIQGSVL 452 (945)
Q Consensus 401 ~~~i~~ViLvGG~s~~p~v~~~l~~~f-g~~~~----~~~~p~~avA~GAa~~a~~~ 452 (945)
..+.+.++++||+.+.|++.+.|...+ |..|. ...+++..=|.+-|++|...
T Consensus 288 ~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r~ 344 (371)
T COG2377 288 QGDPRRLVVCGGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWRT 344 (371)
T ss_pred cCCCceeEeecCCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHHH
Confidence 345689999999999999999999999 43443 24566666666677777543
No 245
>PLN02914 hexokinase
Probab=63.07 E-value=3e+02 Score=32.18 Aligned_cols=64 Identities=19% Similarity=0.166 Sum_probs=42.2
Q ss_pred EcCCCCCHHHHHHHHHHHHHcCC--ccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEE
Q psy2902 210 TVPAYFNDAQRQATKDAGRIAGL--EVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEI 277 (945)
Q Consensus 210 tVPa~~~~~qr~~l~~Aa~~AGl--~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~ 277 (945)
.++..-...-.+.|.+|.+.-|+ +++.++|+.+|..++..... +...+-+=+|.||=-+.+-++
T Consensus 198 ~~~gv~G~DVv~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~~----~~~~iGlIlGTGtNacY~E~~ 263 (490)
T PLN02914 198 AVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWD----DDVMVAVILGTGTNACYVERT 263 (490)
T ss_pred ccCCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcCC----CCceEEEEEECCeeeEEEeec
Confidence 33434455667888888877776 45678999999887766554 234444558888655555444
No 246
>PLN02362 hexokinase
Probab=62.03 E-value=47 Score=38.88 Aligned_cols=61 Identities=13% Similarity=0.181 Sum_probs=41.1
Q ss_pred EcCCCCCHHHHHHHHHHHHHcCCc--cceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEE
Q psy2902 210 TVPAYFNDAQRQATKDAGRIAGLE--VKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSI 274 (945)
Q Consensus 210 tVPa~~~~~qr~~l~~Aa~~AGl~--~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv 274 (945)
.++..-...-.+.|.+|...-|++ ++.++|+.+|..++..+.. ++..+-+=+|.||=-+.+
T Consensus 198 ~~~~v~G~DVv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~aY~~----~~~~iG~IlGTGtNacY~ 260 (509)
T PLN02362 198 AISDMVGKDVAECLQGALNRRGLDMRVAALVNDTVGTLALGHYHD----PDTVAAVIIGTGTNACYL 260 (509)
T ss_pred ccCcccCchHHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhhhcCC----CCceEEEEEECCccceEe
Confidence 333334556788999999888874 5779999999888765543 235555557887644433
No 247
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=61.66 E-value=2.5e+02 Score=30.85 Aligned_cols=91 Identities=15% Similarity=0.117 Sum_probs=48.4
Q ss_pred CCCcEEEEc-CCCCCHHHH--HHHHHHHHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEe
Q psy2902 203 EITEAVITV-PAYFNDAQR--QATKDAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIAD 279 (945)
Q Consensus 203 ~~~~~VitV-Pa~~~~~qr--~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~ 279 (945)
+++.+++|. |..++-... ..-+..+...+++ +..++.-.|-|++.......... -+|++| |||+.+...+
T Consensus 66 did~Iavt~gPg~~~~l~vg~~~ak~la~~~~~p-~~~v~h~~aHa~sa~~~s~~~~~-lvL~vs--Gg~t~l~~~~--- 138 (322)
T TIGR03722 66 DIDAVAFSQGPGLGPCLRVGATAARALALKLNKP-LVGVNHCVAHIEIGRLTTGAKDP-VVLYVS--GGNTQVIAYR--- 138 (322)
T ss_pred HCCEEEEecCCchHHhHHHHHHHHHHHHHHhCCC-eechhhHHHHHHhhhccCCCCCC-eEEEEe--CCceEEEEEe---
Confidence 467778887 655552221 1123334444655 44566676666554443332333 566666 4577666554
Q ss_pred ecCCceEEEEEecCCCCCchHHHHH
Q psy2902 280 VDGEKQFEVLSTNGDTFLGGEDFDQ 304 (945)
Q Consensus 280 ~~~~~~~~vl~~~~~~~lGG~~iD~ 304 (945)
.+.++++....+ .--|+.||.
T Consensus 139 ---~~~~~~l~~t~d-~s~GrlfDa 159 (322)
T TIGR03722 139 ---NGRYRVFGETLD-IGLGNALDK 159 (322)
T ss_pred ---CCeEEEEEEecc-ccchHHHHH
Confidence 245777776544 335666664
No 248
>PLN02405 hexokinase
Probab=60.91 E-value=49 Score=38.65 Aligned_cols=63 Identities=14% Similarity=0.111 Sum_probs=43.1
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCc--cceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEE
Q psy2902 211 VPAYFNDAQRQATKDAGRIAGLE--VKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEI 277 (945)
Q Consensus 211 VPa~~~~~qr~~l~~Aa~~AGl~--~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~ 277 (945)
++..-...-.+.|.+|...-|++ ++.++|+.+|..++..+.. +++.+-+=+|.||=-+.+-+.
T Consensus 199 ~~~~vG~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY~~----~~~~iG~IlGTGtNacY~E~~ 263 (497)
T PLN02405 199 IDDAVGQDVVGELTKAMERVGLDMRVSALVNDTIGTLAGGRYYN----PDVVAAVILGTGTNAAYVERA 263 (497)
T ss_pred cCCccCchHHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhcCC----CCceEEEEEeCCeeeEEEeec
Confidence 33334566788999999888985 5679999999888776654 244555558888655554433
No 249
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=60.11 E-value=14 Score=35.94 Aligned_cols=33 Identities=21% Similarity=0.484 Sum_probs=15.2
Q ss_pred ccCCCCCCCceEeEee----ce---eeeeecCCCCCCceE
Q psy2902 734 ISCFTCSGQGQVRMQQ----GF---FSIQQTCPKCQGAGK 766 (945)
Q Consensus 734 ~~C~~C~G~G~~~~~~----~~---~~~~~~C~~C~G~g~ 766 (945)
..||.|+..|..++.. .+ +-+.-.|+.|+=+-.
T Consensus 2 s~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CGyk~~ 41 (161)
T PF03367_consen 2 SLCPNCGENGTTRILLTDIPYFKEVIIMSFECEHCGYKNN 41 (161)
T ss_dssp EE-TTTSSCCEEEEEEEEETTTEEEEEEEEE-TTT--EEE
T ss_pred CcCCCCCCCcEEEEEEEcCCCCceEEEEEeECCCCCCEee
Confidence 3577777777654321 11 123456888866544
No 250
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=59.85 E-value=9.1 Score=36.15 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=18.3
Q ss_pred ceEEEEcCccceEEEEEeCCc
Q psy2902 72 KIIGIDLGTTNSCVSIIEGSQ 92 (945)
Q Consensus 72 ~viGID~GTt~s~va~~~~~~ 92 (945)
.++|||+|+..+.+|+.++..
T Consensus 2 riL~lD~G~kriGiAvsd~~~ 22 (135)
T PF03652_consen 2 RILGLDYGTKRIGIAVSDPLG 22 (135)
T ss_dssp EEEEEEECSSEEEEEEEETTT
T ss_pred eEEEEEeCCCeEEEEEecCCC
Confidence 379999999999999987653
No 251
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=59.02 E-value=52 Score=32.46 Aligned_cols=44 Identities=32% Similarity=0.293 Sum_probs=30.5
Q ss_pred cCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEE
Q psy2902 230 AGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSII 275 (945)
Q Consensus 230 AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~ 275 (945)
.+++ +.+.++..|+|++..........++++.+-+|.| +-.+++
T Consensus 91 ~~~p-v~i~Nd~~~~a~ae~~~~~~~~~~~~~~l~ig~G-iG~~ii 134 (179)
T PF00480_consen 91 FGVP-VIIENDANAAALAEYWFGAAKDCDNFLYLYIGTG-IGAGII 134 (179)
T ss_dssp HTSE-EEEEEHHHHHHHHHHHHSTTTTTSSEEEEEESSS-EEEEEE
T ss_pred cceE-EEEecCCCcceeehhhcCccCCcceEEEEEeecC-CCccee
Confidence 4554 5789999999998765443344567888888876 455554
No 252
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=58.73 E-value=19 Score=44.05 Aligned_cols=48 Identities=17% Similarity=0.299 Sum_probs=37.0
Q ss_pred CCCcEEEecCccccHHHHHHHHHHhC---CCCCCC---CCCCchhhhhHHHhhh
Q psy2902 403 DINDIILVGGMTRMPKVQEKVKEFFG---KDPRRD---INPDEAVAVGAAIQGS 450 (945)
Q Consensus 403 ~i~~ViLvGG~s~~p~v~~~l~~~fg---~~~~~~---~~p~~avA~GAa~~a~ 450 (945)
.++.|+|+||.++...+.+.+.+.+. .++..+ .-.|.++++|.|++|+
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 36789999999999999999998874 344322 2347799999988774
No 253
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=57.42 E-value=9.7 Score=41.15 Aligned_cols=42 Identities=21% Similarity=0.619 Sum_probs=23.5
Q ss_pred cccCCCCCcccc--------ccCcCcccCCCCCCCceEeEeeceeeeeecCCCCCCce
Q psy2902 716 WDICKSCYGNGA--------KKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAG 765 (945)
Q Consensus 716 ~~~C~~C~G~G~--------~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g 765 (945)
...||.|++.=. ..+...-.|+.|+-.=.. .+..|+.|+-.+
T Consensus 187 ~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~--------~R~~C~~Cg~~~ 236 (309)
T PRK03564 187 RQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHV--------VRVKCSNCEQSG 236 (309)
T ss_pred CCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccc--------cCccCCCCCCCC
Confidence 466888876632 122345566666554444 455666666544
No 254
>KOG1369|consensus
Probab=56.67 E-value=12 Score=42.96 Aligned_cols=66 Identities=12% Similarity=0.162 Sum_probs=49.5
Q ss_pred EcCCCCCHHHHHHHHHHHHHcCCc---cceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEe
Q psy2902 210 TVPAYFNDAQRQATKDAGRIAGLE---VKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIAD 279 (945)
Q Consensus 210 tVPa~~~~~qr~~l~~Aa~~AGl~---~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~ 279 (945)
.++......-.+.+.+|.+.-|+. ++.++++.++..++..... +++++-+-+|.||=-+.+.+...
T Consensus 184 ~~~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~----~~~~igvI~GTGtNacY~e~~~~ 252 (474)
T KOG1369|consen 184 KATDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYED----PNCEIGVIFGTGTNACYMEDMRN 252 (474)
T ss_pred cchhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecC----CCcEEEEEECCCccceeeeeccc
Confidence 344555666678889999998886 5779999999888776655 36677677999988777777643
No 255
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=56.37 E-value=7 Score=35.15 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=18.0
Q ss_pred cccCCCCCccccccCcCcccCCCCCC
Q psy2902 716 WDICKSCYGNGAKKGTSPISCFTCSG 741 (945)
Q Consensus 716 ~~~C~~C~G~G~~~~~~~~~C~~C~G 741 (945)
..+|+.|+-.-+--...+.+||.|+-
T Consensus 9 KR~Cp~CG~kFYDLnk~PivCP~CG~ 34 (108)
T PF09538_consen 9 KRTCPSCGAKFYDLNKDPIVCPKCGT 34 (108)
T ss_pred cccCCCCcchhccCCCCCccCCCCCC
Confidence 35688887777766666777777743
No 256
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=56.13 E-value=35 Score=27.01 Aligned_cols=29 Identities=17% Similarity=0.277 Sum_probs=26.7
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHHHcCCcc
Q psy2902 206 EAVITVPAYFNDAQRQATKDAGRIAGLEV 234 (945)
Q Consensus 206 ~~VitVPa~~~~~qr~~l~~Aa~~AGl~~ 234 (945)
...++.|+.++..+|..+.+.|...||..
T Consensus 16 ~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s 44 (59)
T cd06007 16 NEEYEFPSSLTNHERAVIHRLCRKLGLKS 44 (59)
T ss_pred ccEEEcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 67789999999999999999999999865
No 257
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=54.95 E-value=21 Score=43.53 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=18.4
Q ss_pred HHHHcCCccceecchhHHHHHH
Q psy2902 226 AGRIAGLEVKRIINEPTAAALA 247 (945)
Q Consensus 226 Aa~~AGl~~v~li~Ep~AAAl~ 247 (945)
..+..|++.+.++++-.|+|++
T Consensus 101 l~~~~g~~~v~l~ND~~aaA~g 122 (638)
T PRK14101 101 TRRALGFDTLLVVNDFTALAMA 122 (638)
T ss_pred HHHHcCCCeEEEEchHHHHHcC
Confidence 3345688888999999999998
No 258
>KOG2708|consensus
Probab=54.77 E-value=2.5e+02 Score=28.68 Aligned_cols=73 Identities=16% Similarity=0.289 Sum_probs=47.0
Q ss_pred EEcHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCC---CCCCCCCCCchhhhh
Q psy2902 369 KITRAKLELLV-DELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK---DPRRDINPDEAVAVG 444 (945)
Q Consensus 369 ~itr~~~e~~~-~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~---~~~~~~~p~~avA~G 444 (945)
..|.+++--.+ +.++.-+.+..++++...+- +.|++|||-...-.+|++++.+... .+. ..|-..|+-.|
T Consensus 224 ~~t~~DLCySLQEtvFamLVEiTERAMAh~~s-----~evLIVGGVGCN~RLQeMM~~Mc~eRgg~~f-aTDeRfCIDNG 297 (336)
T KOG2708|consen 224 EVTKEDLCYSLQETVFAMLVEITERAMAHCGS-----KEVLIVGGVGCNERLQEMMAIMCSERGGKLF-ATDERFCIDNG 297 (336)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CcEEEEecccccHHHHHHHHHHHHhcCCceE-ecccceeeeCc
Confidence 45666665333 33455555556667766543 6899999999999999999988732 222 33344566666
Q ss_pred HHH
Q psy2902 445 AAI 447 (945)
Q Consensus 445 Aa~ 447 (945)
+-+
T Consensus 298 ~MI 300 (336)
T KOG2708|consen 298 VMI 300 (336)
T ss_pred hHH
Confidence 543
No 259
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=53.25 E-value=6.3 Score=49.56 Aligned_cols=30 Identities=27% Similarity=0.568 Sum_probs=24.2
Q ss_pred cccCCCCCccccccCc------CcccCCCCCCCceE
Q psy2902 716 WDICKSCYGNGAKKGT------SPISCFTCSGQGQV 745 (945)
Q Consensus 716 ~~~C~~C~G~G~~~~~------~~~~C~~C~G~G~~ 745 (945)
...|+.|.|.|..... ...+|+.|+|+...
T Consensus 736 ~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~ 771 (924)
T TIGR00630 736 GGRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYN 771 (924)
T ss_pred CCCCCCCccceEEEEEccCCCCcccCCCCcCCceeC
Confidence 3679999999997633 36799999999863
No 260
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=51.96 E-value=7.9 Score=38.24 Aligned_cols=63 Identities=16% Similarity=0.214 Sum_probs=45.2
Q ss_pred ccCCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHH
Q psy2902 572 KANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQ 640 (945)
Q Consensus 572 ~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~ 640 (945)
...+.++..+|.+..+++....++|+..- ....+.. .+...+..+++||.+|+++.+|..|..
T Consensus 13 ~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~-----~~~~e~~-~a~~~s~~IN~AY~~L~~p~~Ra~YlL 75 (173)
T PRK00294 13 QPSFRLDLDQLATRYRELAREVHPDRFAD-----APEREQR-LALERSASLNEAYQTLKSPPRRARYLL 75 (173)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----CcHHHHH-HHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 34566889999999999999899987311 0111111 123456778899999999999999985
No 261
>KOG0721|consensus
Probab=51.44 E-value=7.9 Score=38.88 Aligned_cols=60 Identities=28% Similarity=0.402 Sum_probs=46.9
Q ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhcccc
Q psy2902 575 SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAG 645 (945)
Q Consensus 575 ~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g 645 (945)
.+-|+.||.+..+++...-+.|+.... -...+.+..|+.||..|+|+..++-++.+|...
T Consensus 109 pgas~~eIKkaYR~LSik~HPDK~~~~-----------~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PD 168 (230)
T KOG0721|consen 109 PGASEKEIKKAYRRLSIKYHPDKQPPE-----------EGDEEFFEAIAKAYQALTDKKSRENWEKYGNPD 168 (230)
T ss_pred CCCCHHHHHHHHHHhhhhhCCCcCCCc-----------chhHHHHHHHHHHHHHhcchhhHHHHHHhCCCC
Confidence 457889999999999998888884321 112235667789999999999999999998763
No 262
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=51.28 E-value=1.4e+02 Score=31.47 Aligned_cols=45 Identities=24% Similarity=0.243 Sum_probs=30.1
Q ss_pred HcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEE
Q psy2902 229 IAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSII 275 (945)
Q Consensus 229 ~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~ 275 (945)
..+++ +.+.++..|+|++..........++++.+-+|.| +-..++
T Consensus 95 ~~~~p-V~leNDanaaAlaE~~~g~~~~~~~~v~i~lgtG-iG~giv 139 (256)
T PRK13311 95 LIQRE-VRIDNDANCFALSEAWDPEFRTYPTVLGLILGTG-VGGGLI 139 (256)
T ss_pred HHCCC-EEEEchhhHHHHHHHHhcCCCCCCcEEEEEECcC-eEEEEE
Confidence 34666 5799999999998765433334577888888866 334443
No 263
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=49.52 E-value=16 Score=34.68 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=17.9
Q ss_pred CceEEEEcCccceEEEEEeCC
Q psy2902 71 SKIIGIDLGTTNSCVSIIEGS 91 (945)
Q Consensus 71 ~~viGID~GTt~s~va~~~~~ 91 (945)
+.++|||+||-.+.+|+.+..
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~ 22 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDIL 22 (141)
T ss_pred ceEEEEecCCceEEEEEecCC
Confidence 458999999999999997654
No 264
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=49.50 E-value=17 Score=34.54 Aligned_cols=20 Identities=30% Similarity=0.599 Sum_probs=17.3
Q ss_pred ceEEEEcCccceEEEEEeCC
Q psy2902 72 KIIGIDLGTTNSCVSIIEGS 91 (945)
Q Consensus 72 ~viGID~GTt~s~va~~~~~ 91 (945)
.++|||+|+..+.+|+.++.
T Consensus 5 ~iLalD~G~kriGvAv~d~~ 24 (138)
T PRK00109 5 RILGLDVGTKRIGVAVSDPL 24 (138)
T ss_pred cEEEEEeCCCEEEEEEecCC
Confidence 48999999999999997653
No 265
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=49.19 E-value=13 Score=36.40 Aligned_cols=59 Identities=17% Similarity=0.182 Sum_probs=42.3
Q ss_pred CCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHH
Q psy2902 574 NSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQ 640 (945)
Q Consensus 574 ~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~ 640 (945)
.+.++..+|.+..+++....++|+..-.. .+. ..+..+..+++||.+|+++.+|..|..
T Consensus 13 ~f~id~~~L~~aYr~lq~~~HPDk~~~~~--~k~------~~~~~s~~in~AY~~L~dp~~Ra~YlL 71 (166)
T PRK01356 13 EYNIDLKILEKQYFAMQVKYHPDKAKTLQ--EKE------QNLIIASELNNAYSTLKDALKRAEYML 71 (166)
T ss_pred CCCCCHHHHHHHHHHHHHHHCcCCCCCHH--HHH------HHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 34578899999999999999999842100 000 012235577899999999999999964
No 266
>PLN02596 hexokinase-like
Probab=48.87 E-value=5e+02 Score=30.40 Aligned_cols=59 Identities=15% Similarity=0.112 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHHHcCC--ccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEE
Q psy2902 215 FNDAQRQATKDAGRIAGL--EVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEI 277 (945)
Q Consensus 215 ~~~~qr~~l~~Aa~~AGl--~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~ 277 (945)
-...-.+.+.+|...-|+ +++.++|+.+|..++..+.. ++..+-+=+|.||=-+.+-++
T Consensus 203 vG~Dvv~lL~~Al~r~~l~v~v~AivNDTVgTL~a~aY~~----~~~~iG~I~GTGtNacY~E~~ 263 (490)
T PLN02596 203 VGKALVNDINRALEKHGLKIRVFALVDDTIGNLAGGRYYN----KDTVAAVTLGMGTNAAYVEPA 263 (490)
T ss_pred cCcHHHHHHHHHHHhcCCCceEEEEEEcCHHHHHhhhcCC----CCeEEEEEEecccceEEEEEc
Confidence 345556677888777777 45779999999888776654 234444458888655554444
No 267
>PRK04023 DNA polymerase II large subunit; Validated
Probab=47.86 E-value=12 Score=45.96 Aligned_cols=55 Identities=18% Similarity=0.371 Sum_probs=33.0
Q ss_pred ceeeEeeccccccCCCCCccccccCcCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEEeecCCcccCC
Q psy2902 706 GFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNG 777 (945)
Q Consensus 706 g~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~~~~c~~c~G 777 (945)
++...+.+ ....|+.|+-.+ ....|+.|+..-. ....|+.|+-.. .+..|.+|.-
T Consensus 617 ~g~~eVEV-g~RfCpsCG~~t-----~~frCP~CG~~Te---------~i~fCP~CG~~~--~~y~CPKCG~ 671 (1121)
T PRK04023 617 KGTIEVEI-GRRKCPSCGKET-----FYRRCPFCGTHTE---------PVYRCPRCGIEV--EEDECEKCGR 671 (1121)
T ss_pred CCceeecc-cCccCCCCCCcC-----CcccCCCCCCCCC---------cceeCccccCcC--CCCcCCCCCC
Confidence 34444433 346799997764 3468999987621 234688884443 2355777754
No 268
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=47.80 E-value=14 Score=28.79 Aligned_cols=18 Identities=39% Similarity=1.032 Sum_probs=13.3
Q ss_pred ceeeeeecCCCCCCceEE
Q psy2902 750 GFFSIQQTCPKCQGAGKV 767 (945)
Q Consensus 750 ~~~~~~~~C~~C~G~g~~ 767 (945)
|.++.+++|+.|+|.-.+
T Consensus 12 g~YTLke~Cp~CG~~t~~ 29 (59)
T COG2260 12 GRYTLKEKCPVCGGDTKV 29 (59)
T ss_pred CceeecccCCCCCCcccc
Confidence 346788899999887553
No 269
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=47.05 E-value=13 Score=34.12 Aligned_cols=27 Identities=15% Similarity=0.024 Sum_probs=18.2
Q ss_pred cccCCCCCccccccCcCcccCCCCCCC
Q psy2902 716 WDICKSCYGNGAKKGTSPISCFTCSGQ 742 (945)
Q Consensus 716 ~~~C~~C~G~G~~~~~~~~~C~~C~G~ 742 (945)
..+|+.|+-.-+--...+..||.|+-.
T Consensus 9 Kr~Cp~cg~kFYDLnk~p~vcP~cg~~ 35 (129)
T TIGR02300 9 KRICPNTGSKFYDLNRRPAVSPYTGEQ 35 (129)
T ss_pred cccCCCcCccccccCCCCccCCCcCCc
Confidence 356788877777666667777777443
No 270
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=46.92 E-value=13 Score=46.96 Aligned_cols=48 Identities=21% Similarity=0.430 Sum_probs=28.2
Q ss_pred cccCCCCCccccccCcCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEE---eecCCcccCC
Q psy2902 716 WDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKV---IPHPCLDCNG 777 (945)
Q Consensus 716 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~---~~~~c~~c~G 777 (945)
...||.|+..... ..|+.|+.+=. ....|+.|+..=.. ..-.|..|..
T Consensus 667 ~rkCPkCG~~t~~-----~fCP~CGs~te---------~vy~CPsCGaev~~des~a~~CP~CGt 717 (1337)
T PRK14714 667 RRRCPSCGTETYE-----NRCPDCGTHTE---------PVYVCPDCGAEVPPDESGRVECPRCDV 717 (1337)
T ss_pred EEECCCCCCcccc-----ccCcccCCcCC---------CceeCccCCCccCCCccccccCCCCCC
Confidence 4679999875432 37888877632 12368888764100 0225777765
No 271
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=46.79 E-value=10 Score=27.27 Aligned_cols=13 Identities=31% Similarity=0.754 Sum_probs=6.4
Q ss_pred ccCCCCCCCceEe
Q psy2902 734 ISCFTCSGQGQVR 746 (945)
Q Consensus 734 ~~C~~C~G~G~~~ 746 (945)
.+||.|+|+...+
T Consensus 4 ~pCP~CGG~DrFr 16 (40)
T PF08273_consen 4 GPCPICGGKDRFR 16 (40)
T ss_dssp E--TTTT-TTTEE
T ss_pred CCCCCCcCccccc
Confidence 4677777776654
No 272
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=46.66 E-value=68 Score=25.52 Aligned_cols=42 Identities=12% Similarity=0.272 Sum_probs=31.8
Q ss_pred HHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCccc
Q psy2902 193 KKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVK 235 (945)
Q Consensus 193 ~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~v 235 (945)
.+....+.... ....++.|+.++..+|..+.+.|+..||...
T Consensus 5 ~~~i~~F~~s~-~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s~ 46 (60)
T cd02640 5 RQIIQNYAHSD-DIRDMVFSPEFSKEERALIHQIAQKYGLKSR 46 (60)
T ss_pred HHHHHHHHcCC-ccceEEcCCCCCHHHHHHHHHHHHHcCCcee
Confidence 34444444332 4567899999999999999999999999753
No 273
>PF14353 CpXC: CpXC protein
Probab=45.95 E-value=10 Score=35.37 Aligned_cols=12 Identities=33% Similarity=0.708 Sum_probs=8.4
Q ss_pred eecCCCCCCceE
Q psy2902 755 QQTCPKCQGAGK 766 (945)
Q Consensus 755 ~~~C~~C~G~g~ 766 (945)
..+||.|+....
T Consensus 38 ~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 38 SFTCPSCGHKFR 49 (128)
T ss_pred EEECCCCCCcee
Confidence 456777777765
No 274
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=45.10 E-value=17 Score=35.53 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=17.8
Q ss_pred CCceEEEEcCccceEEEEEeC
Q psy2902 70 MSKIIGIDLGTTNSCVSIIEG 90 (945)
Q Consensus 70 m~~viGID~GTt~s~va~~~~ 90 (945)
|+.++|||-|++++..|+.+.
T Consensus 1 ~m~iLGIDPgl~~tG~avi~~ 21 (164)
T PRK00039 1 MMRILGIDPGLRRTGYGVIEV 21 (164)
T ss_pred CCEEEEEccccCceeEEEEEe
Confidence 456899999999999998753
No 275
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=42.97 E-value=15 Score=44.64 Aligned_cols=40 Identities=18% Similarity=0.319 Sum_probs=30.4
Q ss_pred HHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCC
Q psy2902 387 IEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPR 432 (945)
Q Consensus 387 ~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~ 432 (945)
++.|.++|.+-. ..++||=--+..|-+.+.++..||.++.
T Consensus 235 l~~i~~~L~~Gk------qvLvLVPEI~Ltpq~~~rf~~rFg~~v~ 274 (730)
T COG1198 235 LEAIAKVLAQGK------QVLVLVPEIALTPQLLARFKARFGAKVA 274 (730)
T ss_pred HHHHHHHHHcCC------EEEEEeccccchHHHHHHHHHHhCCChh
Confidence 445556666532 5788999999999999999999986653
No 276
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=42.18 E-value=11 Score=47.52 Aligned_cols=30 Identities=27% Similarity=0.562 Sum_probs=24.0
Q ss_pred cccCCCCCccccccCc------CcccCCCCCCCceE
Q psy2902 716 WDICKSCYGNGAKKGT------SPISCFTCSGQGQV 745 (945)
Q Consensus 716 ~~~C~~C~G~G~~~~~------~~~~C~~C~G~G~~ 745 (945)
...|+.|.|.|..... ...+|+.|+|+...
T Consensus 738 ~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~ 773 (943)
T PRK00349 738 GGRCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYN 773 (943)
T ss_pred CCCCCcccccceEEEEeccCCCccccCccccCcccc
Confidence 4679999999997643 35799999999864
No 277
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=42.13 E-value=10 Score=33.33 Aligned_cols=12 Identities=33% Similarity=0.933 Sum_probs=7.8
Q ss_pred eecCCCCCCceE
Q psy2902 755 QQTCPKCQGAGK 766 (945)
Q Consensus 755 ~~~C~~C~G~g~ 766 (945)
-..|+.|.|.|+
T Consensus 32 fk~c~rcgg~G~ 43 (95)
T PF03589_consen 32 FKDCERCGGRGY 43 (95)
T ss_pred hhhhhhhcCCCC
Confidence 355777777775
No 278
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=41.94 E-value=11 Score=37.23 Aligned_cols=61 Identities=18% Similarity=0.229 Sum_probs=43.2
Q ss_pred CCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHH
Q psy2902 574 NSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQ 640 (945)
Q Consensus 574 ~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~ 640 (945)
.+.++..+|.+..+.+....++|+.... ...+. ..+...+..+++||.+|+++.+|..|..
T Consensus 12 ~~~~d~~~L~~~yr~l~~~~HPDk~~~~-----~~~~~-~~a~~~s~~iN~AY~~L~dp~~Ra~Yll 72 (171)
T PRK05014 12 RYDIDTQLLASRYQELQRQFHPDKFANA-----SERER-LLAVQQAATINDAYQTLKHPLKRAEYLL 72 (171)
T ss_pred CCCCCHHHHHHHHHHHHHHhCcCCCCCC-----cHHHH-HHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence 4457788999999999999999973210 00000 1123456678899999999999999974
No 279
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=41.91 E-value=18 Score=25.60 Aligned_cols=12 Identities=25% Similarity=0.681 Sum_probs=7.3
Q ss_pred ccCCCCCCCceE
Q psy2902 734 ISCFTCSGQGQV 745 (945)
Q Consensus 734 ~~C~~C~G~G~~ 745 (945)
.+||.|+|+...
T Consensus 4 ~pCP~CGG~DrF 15 (37)
T smart00778 4 GPCPNCGGSDRF 15 (37)
T ss_pred cCCCCCCCcccc
Confidence 456666666654
No 280
>PRK05978 hypothetical protein; Provisional
Probab=41.27 E-value=12 Score=35.71 Aligned_cols=26 Identities=27% Similarity=0.819 Sum_probs=16.5
Q ss_pred cCCCCCCCceEeEeeceeeeeecCCCCCC
Q psy2902 735 SCFTCSGQGQVRMQQGFFSIQQTCPKCQG 763 (945)
Q Consensus 735 ~C~~C~G~G~~~~~~~~~~~~~~C~~C~G 763 (945)
.||+| |.|+. ..++..+.+.|+.|+-
T Consensus 35 rCP~C-G~G~L--F~g~Lkv~~~C~~CG~ 60 (148)
T PRK05978 35 RCPAC-GEGKL--FRAFLKPVDHCAACGE 60 (148)
T ss_pred cCCCC-CCCcc--cccccccCCCccccCC
Confidence 57777 44443 2356667788888864
No 281
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=40.90 E-value=25 Score=38.13 Aligned_cols=42 Identities=19% Similarity=0.570 Sum_probs=23.3
Q ss_pred cccCCCCCcccc---------ccCcCcccCCCCCCCceEeEeeceeeeeecCCCCCCce
Q psy2902 716 WDICKSCYGNGA---------KKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAG 765 (945)
Q Consensus 716 ~~~C~~C~G~G~---------~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g 765 (945)
...||.|++.=. ..+...-.|+-|+-.=.. .+..|+.|+-.+
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~--------~R~~C~~Cg~~~ 234 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHY--------VRVKCSHCEESK 234 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccc--------cCccCCCCCCCC
Confidence 347888876532 122345567777555444 455666665543
No 282
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=40.32 E-value=12 Score=45.23 Aligned_cols=28 Identities=29% Similarity=0.679 Sum_probs=23.1
Q ss_pred ccCCCCCccccccCc------CcccCCCCCCCce
Q psy2902 717 DICKSCYGNGAKKGT------SPISCFTCSGQGQ 744 (945)
Q Consensus 717 ~~C~~C~G~G~~~~~------~~~~C~~C~G~G~ 744 (945)
..|..|+|.|..... -..+|+.|+|+=.
T Consensus 731 GRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRY 764 (935)
T COG0178 731 GRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRY 764 (935)
T ss_pred cCCccccCCceEEEEeccCCCceeeCCCcCCccc
Confidence 679999999997654 2589999999864
No 283
>COG5349 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.11 E-value=9.6 Score=34.38 Aligned_cols=25 Identities=32% Similarity=0.995 Sum_probs=16.0
Q ss_pred cCCCCCCCceEeEeeceeeeeecCCCCC
Q psy2902 735 SCFTCSGQGQVRMQQGFFSIQQTCPKCQ 762 (945)
Q Consensus 735 ~C~~C~G~G~~~~~~~~~~~~~~C~~C~ 762 (945)
.||+| |.|+. .+|+......|..|+
T Consensus 23 rCP~C-GeGrL--F~gFLK~~p~C~aCG 47 (126)
T COG5349 23 RCPRC-GEGRL--FRGFLKVVPACEACG 47 (126)
T ss_pred CCCCC-CCchh--hhhhcccCchhhhcc
Confidence 57777 45543 455566677777775
No 284
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=39.94 E-value=1.7e+02 Score=30.64 Aligned_cols=71 Identities=17% Similarity=0.276 Sum_probs=43.9
Q ss_pred ceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHHHH
Q psy2902 235 KRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEF 314 (945)
Q Consensus 235 v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~ 314 (945)
..+++.-.||+..+..+. .....||+|+|-|.+..+++.- ..+.-+.......+.-+.+...|.++..-++
T Consensus 207 av~mDskfaav~gal~dp---aa~palvVd~GngHttaalvde------dRI~gv~EHHT~~Lspekled~I~rf~~GeL 277 (342)
T COG4012 207 AVAMDSKFAAVMGALVDP---AADPALVVDYGNGHTTAALVDE------DRIVGVYEHHTIRLSPEKLEDQIIRFVEGEL 277 (342)
T ss_pred EEEEcchhHhhhhcccCc---ccCceEEEEccCCceEEEEecC------CeEEEEeecccccCCHHHHHHHHHHHHhccc
Confidence 345666666666666654 2448999999999999998852 3444333334455555555555555544443
No 285
>PF14353 CpXC: CpXC protein
Probab=39.53 E-value=25 Score=32.78 Aligned_cols=13 Identities=15% Similarity=0.570 Sum_probs=6.8
Q ss_pred cccCCCCCCCceE
Q psy2902 733 PISCFTCSGQGQV 745 (945)
Q Consensus 733 ~~~C~~C~G~G~~ 745 (945)
..+||.|+..+.+
T Consensus 38 ~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 38 SFTCPSCGHKFRL 50 (128)
T ss_pred EEECCCCCCceec
Confidence 4455555555543
No 286
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=39.29 E-value=19 Score=26.71 Aligned_cols=9 Identities=33% Similarity=0.785 Sum_probs=4.2
Q ss_pred ecCCCCCCc
Q psy2902 756 QTCPKCQGA 764 (945)
Q Consensus 756 ~~C~~C~G~ 764 (945)
..|+.|+.+
T Consensus 22 ~~Cp~CG~~ 30 (46)
T PRK00398 22 VRCPYCGYR 30 (46)
T ss_pred eECCCCCCe
Confidence 345555443
No 287
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=39.25 E-value=40 Score=26.77 Aligned_cols=25 Identities=12% Similarity=0.349 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Q psy2902 899 HVTIETPVQLTEYQKKLLRSLETSI 923 (945)
Q Consensus 899 ~~~i~~p~~l~~~~~~~~~~~~~~~ 923 (945)
..+..||..||+++|..+..++..+
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la~~l 41 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLASRL 41 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHc
Confidence 5678999999999999999999765
No 288
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=38.87 E-value=19 Score=24.70 Aligned_cols=22 Identities=36% Similarity=0.750 Sum_probs=9.9
Q ss_pred cCCCCCccccc-cCcCcccCCCC
Q psy2902 718 ICKSCYGNGAK-KGTSPISCFTC 739 (945)
Q Consensus 718 ~C~~C~G~G~~-~~~~~~~C~~C 739 (945)
.|..|++.|.. .......|..|
T Consensus 5 ~C~~C~~~~i~~~~~~~~~C~~C 27 (33)
T PF08792_consen 5 KCSKCGGNGIVNKEDDYEVCIFC 27 (33)
T ss_pred EcCCCCCCeEEEecCCeEEcccC
Confidence 45555555544 22233344444
No 289
>KOG0678|consensus
Probab=38.58 E-value=5.4e+02 Score=28.08 Aligned_cols=96 Identities=20% Similarity=0.157 Sum_probs=50.5
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHHHcCCccceecchhHHHH--HHhccCCC--CCCCceEEEEEeCCcceEEEEEEEEeec
Q psy2902 206 EAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAA--LAFGLDKS--GKSDRNIVVYDLGGGTFDVSIIEIADVD 281 (945)
Q Consensus 206 ~~VitVPa~~~~~qr~~l~~Aa~~AGl~~v~li~Ep~AAA--l~~~~~~~--~~~~~~vlVvD~GggT~dvsv~~~~~~~ 281 (945)
...+|-|.--.++.|+.+.+..-.. +++..+ .=..+|. |+...... .+..-+=+|+|-|.|-+.+-.+.
T Consensus 108 ~fLlteppln~penreytaeImfEs-fnvpgl-yiAVqavLALaaswts~~v~er~ltG~VidsGdgvThvipva----- 180 (415)
T KOG0678|consen 108 YFLLTEPPLNQPENREYTAEIMFES-FNVPGL-YIAVQAVLALAASWTSRQVGERFLTGIVIDSGDGVTHVIPVA----- 180 (415)
T ss_pred eEEecCCCCCCchhhHHHHHhhhhh-ccCchH-HHHHHHHHHHHHHHHHhhhhhheeeeEEEecCCCeeEEEEee-----
Confidence 4678888777788888776664221 222221 1112222 22222221 12223346899999988776653
Q ss_pred CCceEEEEEecCCCCCchHHHHHHHHHHH
Q psy2902 282 GEKQFEVLSTNGDTFLGGEDFDQRIIDYI 310 (945)
Q Consensus 282 ~~~~~~vl~~~~~~~lGG~~iD~~l~~~l 310 (945)
++.+ +.+.-....+.|++++.-+..++
T Consensus 181 -EgyV-igScik~iPiagrdiT~fiQ~ll 207 (415)
T KOG0678|consen 181 -EGYV-IGSCIKHIPIAGRDITYFIQQLL 207 (415)
T ss_pred -cceE-EeeeeccccccCCchhHHHHHHh
Confidence 2222 22223446788999875544443
No 290
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=38.57 E-value=15 Score=49.26 Aligned_cols=28 Identities=32% Similarity=0.596 Sum_probs=23.4
Q ss_pred ccCCCCCccccccCc------CcccCCCCCCCce
Q psy2902 717 DICKSCYGNGAKKGT------SPISCFTCSGQGQ 744 (945)
Q Consensus 717 ~~C~~C~G~G~~~~~------~~~~C~~C~G~G~ 744 (945)
..|+.|.|.|..... ..++|+.|+|+..
T Consensus 1608 GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~ 1641 (1809)
T PRK00635 1608 GQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRI 1641 (1809)
T ss_pred CCCCCCccCceEEEecccCCCcccCCCCCCCcCC
Confidence 679999999987543 4779999999975
No 291
>PRK04023 DNA polymerase II large subunit; Validated
Probab=38.51 E-value=25 Score=43.50 Aligned_cols=54 Identities=20% Similarity=0.364 Sum_probs=34.0
Q ss_pred eeccccc-cccccceeeEeeccccccCCCCCccccccCcCcccCCCCCCCceEeEeeceeeeeecCCCCCCceE
Q psy2902 694 YNLEITL-EQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGK 766 (945)
Q Consensus 694 ~~l~~~~-~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~ 766 (945)
+++++.. .|..||... -...|+.|+.. -.....|+.|+-.+ ....|++|+-.-.
T Consensus 620 ~eVEVg~RfCpsCG~~t-----~~frCP~CG~~----Te~i~fCP~CG~~~----------~~y~CPKCG~El~ 674 (1121)
T PRK04023 620 IEVEIGRRKCPSCGKET-----FYRRCPFCGTH----TEPVYRCPRCGIEV----------EEDECEKCGREPT 674 (1121)
T ss_pred eeecccCccCCCCCCcC-----CcccCCCCCCC----CCcceeCccccCcC----------CCCcCCCCCCCCC
Confidence 4555554 456666552 34689999887 12345799994332 3466999987653
No 292
>PRK13326 pantothenate kinase; Reviewed
Probab=38.26 E-value=31 Score=36.73 Aligned_cols=23 Identities=22% Similarity=0.418 Sum_probs=19.4
Q ss_pred CCceEEEEcCccceEEEEEeCCc
Q psy2902 70 MSKIIGIDLGTTNSCVSIIEGSQ 92 (945)
Q Consensus 70 m~~viGID~GTt~s~va~~~~~~ 92 (945)
++.++.||+|+|+++++++++++
T Consensus 5 ~~~~L~IDiGNT~ik~glf~~~~ 27 (262)
T PRK13326 5 LSSQLIIDIGNTSISFALYKDNK 27 (262)
T ss_pred ccEEEEEEeCCCeEEEEEEECCE
Confidence 34589999999999999998653
No 293
>PRK05580 primosome assembly protein PriA; Validated
Probab=37.08 E-value=22 Score=43.62 Aligned_cols=40 Identities=23% Similarity=0.579 Sum_probs=24.1
Q ss_pred ccCCCCCccccc-cCcCcccCCCCCCCceEeEeeceeeeeecCCCCCCce
Q psy2902 717 DICKSCYGNGAK-KGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAG 765 (945)
Q Consensus 717 ~~C~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g 765 (945)
..|+.|++.=.. .......|+.|+-+-. ....|+.|++.-
T Consensus 391 ~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~---------~~~~Cp~Cg~~~ 431 (679)
T PRK05580 391 AECPHCDASLTLHRFQRRLRCHHCGYQEP---------IPKACPECGSTD 431 (679)
T ss_pred cCCCCCCCceeEECCCCeEECCCCcCCCC---------CCCCCCCCcCCe
Confidence 458888774332 2234556888865433 356788887763
No 294
>PRK00292 glk glucokinase; Provisional
Probab=36.91 E-value=30 Score=38.00 Aligned_cols=49 Identities=29% Similarity=0.245 Sum_probs=31.7
Q ss_pred HHHHcCCccceecchhHHHHHHhccC--------CCCC--CCceEEEEEeCCcceEEEE
Q psy2902 226 AGRIAGLEVKRIINEPTAAALAFGLD--------KSGK--SDRNIVVYDLGGGTFDVSI 274 (945)
Q Consensus 226 Aa~~AGl~~v~li~Ep~AAAl~~~~~--------~~~~--~~~~vlVvD~GggT~dvsv 274 (945)
..+..|++.+.+.++-.|+|++-... .... ....++++-+|.|-=-..+
T Consensus 86 l~~~~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTGiG~giv 144 (316)
T PRK00292 86 MKQELGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTGLGVAGL 144 (316)
T ss_pred HHHHhCCCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCcceEEEE
Confidence 33456887789999999999986431 1111 1367888888877433333
No 295
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=36.39 E-value=16 Score=32.09 Aligned_cols=29 Identities=34% Similarity=0.757 Sum_probs=19.3
Q ss_pred ccCCCCCccccccCc----------CcccCCCCCCCceE
Q psy2902 717 DICKSCYGNGAKKGT----------SPISCFTCSGQGQV 745 (945)
Q Consensus 717 ~~C~~C~G~G~~~~~----------~~~~C~~C~G~G~~ 745 (945)
..|..|+|.|..... --..|++|+|.|..
T Consensus 6 ~~c~~c~g~g~al~~~~s~~~~G~pvfk~c~rcgg~G~s 44 (95)
T PF03589_consen 6 DSCRRCAGDGAALDMKQSKAQFGVPVFKDCERCGGRGYS 44 (95)
T ss_pred CCcCccCCcceeccHHHhHhccCCchhhhhhhhcCCCCC
Confidence 467788888865432 13468888888865
No 296
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=36.11 E-value=22 Score=24.59 Aligned_cols=27 Identities=30% Similarity=0.664 Sum_probs=9.5
Q ss_pred CCCCCCCceEeEeeceeeeeecCCCCC
Q psy2902 736 CFTCSGQGQVRMQQGFFSIQQTCPKCQ 762 (945)
Q Consensus 736 C~~C~G~G~~~~~~~~~~~~~~C~~C~ 762 (945)
|+.|++.=...+..|--.....|+.|+
T Consensus 3 C~~CG~~l~~~ip~gd~r~R~vC~~Cg 29 (34)
T PF14803_consen 3 CPQCGGPLERRIPEGDDRERLVCPACG 29 (34)
T ss_dssp -TTT--B-EEE--TT-SS-EEEETTTT
T ss_pred cccccChhhhhcCCCCCccceECCCCC
Confidence 556655533333333333455566664
No 297
>PRK13321 pantothenate kinase; Reviewed
Probab=35.76 E-value=33 Score=36.41 Aligned_cols=19 Identities=32% Similarity=0.643 Sum_probs=17.3
Q ss_pred eEEEEcCccceEEEEEeCC
Q psy2902 73 IIGIDLGTTNSCVSIIEGS 91 (945)
Q Consensus 73 viGID~GTt~s~va~~~~~ 91 (945)
+++||+|.|++++++++++
T Consensus 2 iL~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 6999999999999999855
No 298
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=35.60 E-value=22 Score=36.68 Aligned_cols=12 Identities=8% Similarity=0.097 Sum_probs=8.2
Q ss_pred CccEEEEEEEEC
Q psy2902 893 PGDLFCHVTIET 904 (945)
Q Consensus 893 ~Gdl~v~~~i~~ 904 (945)
-.+|++++++.+
T Consensus 201 vH~i~l~~Q~Tv 212 (238)
T PF07092_consen 201 VHNIVLHMQGTV 212 (238)
T ss_pred EEEEEEEEEEEE
Confidence 368888886553
No 299
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=35.55 E-value=1.3e+02 Score=23.97 Aligned_cols=30 Identities=13% Similarity=0.248 Sum_probs=26.5
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHHHcCCccc
Q psy2902 206 EAVITVPAYFNDAQRQATKDAGRIAGLEVK 235 (945)
Q Consensus 206 ~~VitVPa~~~~~qr~~l~~Aa~~AGl~~v 235 (945)
...+..|+.++..+|..+.+.|+..||...
T Consensus 17 ~~~l~F~p~ls~~eR~~vH~lA~~~gL~s~ 46 (60)
T cd02641 17 ATELEFPPTLSSHDRLLVHELAEELGLRHE 46 (60)
T ss_pred cCcEECCCCCCHHHHHHHHHHHHHcCCceE
Confidence 367889999999999999999999998653
No 300
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=35.49 E-value=48 Score=32.06 Aligned_cols=17 Identities=47% Similarity=0.804 Sum_probs=15.7
Q ss_pred eEEEEcCccceEEEEEe
Q psy2902 73 IIGIDLGTTNSCVSIIE 89 (945)
Q Consensus 73 viGID~GTt~s~va~~~ 89 (945)
++|||.|++++..|+.+
T Consensus 2 ILGIDPGl~~~G~av~~ 18 (154)
T cd00529 2 ILGIDPGSRNTGYGVIE 18 (154)
T ss_pred EEEEccCcCceEEEEEE
Confidence 79999999999999975
No 301
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=35.17 E-value=19 Score=25.47 Aligned_cols=11 Identities=18% Similarity=0.386 Sum_probs=5.4
Q ss_pred cCCCCCccccc
Q psy2902 718 ICKSCYGNGAK 728 (945)
Q Consensus 718 ~C~~C~G~G~~ 728 (945)
+||.|+.....
T Consensus 4 ~CP~C~~~f~v 14 (37)
T PF13719_consen 4 TCPNCQTRFRV 14 (37)
T ss_pred ECCCCCceEEc
Confidence 45555544443
No 302
>KOG2703|consensus
Probab=35.15 E-value=43 Score=36.82 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=18.3
Q ss_pred eeeEEEEeecCCCCCeEEEEcC
Q psy2902 784 NKTLEVKIPAGIENNMRIRSTG 805 (945)
Q Consensus 784 ~~~l~v~ip~G~~~g~~i~~~g 805 (945)
.+.+.++||.-.+.|+.-.++|
T Consensus 118 IpEldlEIP~~Sq~GslTTVEG 139 (460)
T KOG2703|consen 118 IPELDLEIPAKSQKGSLTTVEG 139 (460)
T ss_pred cccceeeccccccCCceeehHH
Confidence 5667899999999999888765
No 303
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=34.89 E-value=38 Score=26.09 Aligned_cols=10 Identities=30% Similarity=0.999 Sum_probs=6.4
Q ss_pred cCCCCCCceE
Q psy2902 757 TCPKCQGAGK 766 (945)
Q Consensus 757 ~C~~C~G~g~ 766 (945)
.|..|+..|.
T Consensus 28 ~C~~Cga~~~ 37 (53)
T TIGR03655 28 ECSTCGASGP 37 (53)
T ss_pred ECCCCCCCcc
Confidence 5777766654
No 304
>PRK13318 pantothenate kinase; Reviewed
Probab=34.72 E-value=35 Score=36.22 Aligned_cols=19 Identities=37% Similarity=0.784 Sum_probs=17.1
Q ss_pred eEEEEcCccceEEEEEeCC
Q psy2902 73 IIGIDLGTTNSCVSIIEGS 91 (945)
Q Consensus 73 viGID~GTt~s~va~~~~~ 91 (945)
+++||+|.|++++++++++
T Consensus 2 iL~IDIGnT~iK~al~d~g 20 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGG 20 (258)
T ss_pred EEEEEECCCcEEEEEEECC
Confidence 6999999999999999853
No 305
>KOG0720|consensus
Probab=34.61 E-value=18 Score=40.61 Aligned_cols=55 Identities=29% Similarity=0.310 Sum_probs=42.1
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhc
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYG 642 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~ 642 (945)
..|+++|.+-.++.+.+=++|+..-.++++ -|.....||++++++++|+.||...
T Consensus 246 d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~E------------afk~Lq~Afevig~~~kR~eYd~e~ 300 (490)
T KOG0720|consen 246 DCSDADLKKNYRKKAMLVHPDKNMIPRAEE------------AFKKLQVAFEVIGDSVKRKEYDLEL 300 (490)
T ss_pred CCCHHHHHHHHHhhceEeCCCccCChhHHH------------HHHHHHHHHHHhcchhhhhHHHHHH
Confidence 467889999998888888888876444432 3333458999999999999999754
No 306
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=34.12 E-value=32 Score=42.02 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=10.9
Q ss_pred cCCCCCcccccc-CcCcccCCCCCCC
Q psy2902 718 ICKSCYGNGAKK-GTSPISCFTCSGQ 742 (945)
Q Consensus 718 ~C~~C~G~G~~~-~~~~~~C~~C~G~ 742 (945)
.|+.|...=.-. .+..-.|+.|+-+
T Consensus 446 ~Cp~Cd~~lt~H~~~~~L~CH~Cg~~ 471 (730)
T COG1198 446 ECPNCDSPLTLHKATGQLRCHYCGYQ 471 (730)
T ss_pred cCCCCCcceEEecCCCeeEeCCCCCC
Confidence 455555443321 2234455555444
No 307
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=33.92 E-value=14 Score=44.83 Aligned_cols=47 Identities=21% Similarity=0.455 Sum_probs=0.0
Q ss_pred cccCCCCCccccccCcCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEEeecCCcccCCC
Q psy2902 716 WDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGI 778 (945)
Q Consensus 716 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~ 778 (945)
...|+.|+-... ...|+.|++.=. ....|+.|+-. +.+..|.+|.-.
T Consensus 655 ~r~Cp~Cg~~t~-----~~~Cp~CG~~T~---------~~~~Cp~C~~~--~~~~~C~~C~~~ 701 (900)
T PF03833_consen 655 RRRCPKCGKETF-----YNRCPECGSHTE---------PVYVCPDCGIE--VEEDECPKCGRE 701 (900)
T ss_dssp ---------------------------------------------------------------
T ss_pred cccCcccCCcch-----hhcCcccCCccc---------cceeccccccc--cCcccccccccc
Confidence 366888865543 456888866432 23458888764 234578887653
No 308
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=33.75 E-value=59 Score=33.23 Aligned_cols=25 Identities=24% Similarity=0.622 Sum_probs=21.4
Q ss_pred CCCceEEEEEeCCcceEEEEEEEEe
Q psy2902 255 KSDRNIVVYDLGGGTFDVSIIEIAD 279 (945)
Q Consensus 255 ~~~~~vlVvD~GggT~dvsv~~~~~ 279 (945)
.....+|++|+||.++-+.++++..
T Consensus 60 ~E~G~~LalDlGGTnlRv~~V~L~g 84 (206)
T PF00349_consen 60 NEKGDFLALDLGGTNLRVALVELSG 84 (206)
T ss_dssp TTEEEEEEEEESSSSEEEEEEEEES
T ss_pred CCCceEEEEeecCcEEEEEEEEEcC
Confidence 3456799999999999999999953
No 309
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=33.06 E-value=28 Score=41.94 Aligned_cols=46 Identities=24% Similarity=0.578 Sum_probs=23.4
Q ss_pred cCCCCCccccccCcCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEEeecCCcccC
Q psy2902 718 ICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCN 776 (945)
Q Consensus 718 ~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~~~~c~~c~ 776 (945)
.||.|+..- .....-|+.|+..-. ...|+.|+-.=..-..-|..|.
T Consensus 3 ~Cp~Cg~~n---~~~akFC~~CG~~l~----------~~~Cp~CG~~~~~~~~fC~~CG 48 (645)
T PRK14559 3 ICPQCQFEN---PNNNRFCQKCGTSLT----------HKPCPQCGTEVPVDEAHCPNCG 48 (645)
T ss_pred cCCCCCCcC---CCCCccccccCCCCC----------CCcCCCCCCCCCcccccccccC
Confidence 577775442 222335777744321 1357777655333334466664
No 310
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=32.99 E-value=2.2e+02 Score=32.32 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=23.1
Q ss_pred CCCcEEEecCcc-ccHHHHHHHHHHh
Q psy2902 403 DINDIILVGGMT-RMPKVQEKVKEFF 427 (945)
Q Consensus 403 ~i~~ViLvGG~s-~~p~v~~~l~~~f 427 (945)
.+|.|+++||-+ .++.+++.+.+.+
T Consensus 323 ~vDaiVfTGGIgE~s~~lr~~I~~~l 348 (402)
T PRK00180 323 RLDAIVFTAGIGENSALVREKVLEGL 348 (402)
T ss_pred CCCEEEEcCccccCCHHHHHHHHhhh
Confidence 589999999999 9999999998876
No 311
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=32.58 E-value=45 Score=24.04 Aligned_cols=9 Identities=44% Similarity=1.305 Sum_probs=5.2
Q ss_pred eecCCCCCC
Q psy2902 755 QQTCPKCQG 763 (945)
Q Consensus 755 ~~~C~~C~G 763 (945)
-+.|+.|+|
T Consensus 19 id~C~~C~G 27 (41)
T PF13453_consen 19 IDVCPSCGG 27 (41)
T ss_pred EEECCCCCe
Confidence 345666665
No 312
>PRK13320 pantothenate kinase; Reviewed
Probab=32.50 E-value=43 Score=35.26 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=18.3
Q ss_pred CceEEEEcCccceEEEEEeCC
Q psy2902 71 SKIIGIDLGTTNSCVSIIEGS 91 (945)
Q Consensus 71 ~~viGID~GTt~s~va~~~~~ 91 (945)
+-++.||+|+|+++.++++++
T Consensus 2 ~M~L~iDiGNT~ik~~~~~~~ 22 (244)
T PRK13320 2 SMNLVIDIGNTTTKLAVFEGD 22 (244)
T ss_pred ceEEEEEeCCCcEEEEEEECC
Confidence 348999999999999999855
No 313
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=32.19 E-value=40 Score=23.03 Aligned_cols=23 Identities=30% Similarity=0.647 Sum_probs=9.8
Q ss_pred CCCCCccccccCcCcccCCCCCC
Q psy2902 719 CKSCYGNGAKKGTSPISCFTCSG 741 (945)
Q Consensus 719 C~~C~G~G~~~~~~~~~C~~C~G 741 (945)
|..|+..=.........|+.|+.
T Consensus 3 C~~Cg~~~~~~~~~~irC~~CG~ 25 (32)
T PF03604_consen 3 CGECGAEVELKPGDPIRCPECGH 25 (32)
T ss_dssp ESSSSSSE-BSTSSTSSBSSSS-
T ss_pred CCcCCCeeEcCCCCcEECCcCCC
Confidence 44454443333334455555543
No 314
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=30.86 E-value=33 Score=25.32 Aligned_cols=21 Identities=24% Similarity=0.656 Sum_probs=8.0
Q ss_pred CCCCCccccccCcCcccCCCC
Q psy2902 719 CKSCYGNGAKKGTSPISCFTC 739 (945)
Q Consensus 719 C~~C~G~G~~~~~~~~~C~~C 739 (945)
|..|+..-.........|+.|
T Consensus 5 C~~Cg~~~~~~~~~~irC~~C 25 (44)
T smart00659 5 CGECGRENEIKSKDVVRCREC 25 (44)
T ss_pred CCCCCCEeecCCCCceECCCC
Confidence 444443333222233344444
No 315
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=30.83 E-value=28 Score=33.82 Aligned_cols=60 Identities=20% Similarity=0.230 Sum_probs=41.2
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHh
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQY 641 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~ 641 (945)
.+...+|.+..+.+....++|+-.. ....+. ..+...+..+++||.+|+++.+|..|..-
T Consensus 2 ~iD~~~L~~~yr~lq~~~HPD~~~~-----~~~~~~-~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~ 61 (157)
T TIGR00714 2 QLDTQALSLRYQDLQRQYHPDKFAS-----GSAQEQ-LAAVQQSTTLNQAYQTLKDPLMRAEYMLS 61 (157)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCC-----CChhhh-HHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence 3567888888888888888886311 000111 11234566778999999999999999853
No 316
>PRK14873 primosome assembly protein PriA; Provisional
Probab=30.76 E-value=31 Score=42.00 Aligned_cols=27 Identities=11% Similarity=0.394 Sum_probs=21.7
Q ss_pred CcEEEecCccccHHHHHHHHHHhC-CCC
Q psy2902 405 NDIILVGGMTRMPKVQEKVKEFFG-KDP 431 (945)
Q Consensus 405 ~~ViLvGG~s~~p~v~~~l~~~fg-~~~ 431 (945)
..++|+=--+..|.+.+.++..|| ..+
T Consensus 190 ~vLvLvPEi~lt~q~~~rl~~~f~~~~v 217 (665)
T PRK14873 190 GALVVVPDQRDVDRLEAALRALLGAGDV 217 (665)
T ss_pred eEEEEecchhhHHHHHHHHHHHcCCCcE
Confidence 478888888888999999999997 444
No 317
>PRK13130 H/ACA RNA-protein complex component Nop10p; Reviewed
Probab=30.71 E-value=32 Score=26.85 Aligned_cols=14 Identities=29% Similarity=1.099 Sum_probs=9.7
Q ss_pred eeeeeecCCCCCCc
Q psy2902 751 FFSIQQTCPKCQGA 764 (945)
Q Consensus 751 ~~~~~~~C~~C~G~ 764 (945)
.+++...|+.|++.
T Consensus 13 vYTLk~~CP~CG~~ 26 (56)
T PRK13130 13 VYTLKEICPVCGGK 26 (56)
T ss_pred CEEccccCcCCCCC
Confidence 34567778888765
No 318
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=30.55 E-value=4.4e+02 Score=29.94 Aligned_cols=25 Identities=28% Similarity=0.555 Sum_probs=22.9
Q ss_pred CCCcEEEecCcc-ccHHHHHHHHHHh
Q psy2902 403 DINDIILVGGMT-RMPKVQEKVKEFF 427 (945)
Q Consensus 403 ~i~~ViLvGG~s-~~p~v~~~l~~~f 427 (945)
.+|.|+++||-+ .++.+++.+.+.+
T Consensus 327 ~vDaiVFTGGIGEns~~vr~~i~~~l 352 (404)
T TIGR00016 327 NLDAIVFTGGIGENAATVRELVLEAL 352 (404)
T ss_pred CCCEEEEcCccccCCHHHHHHHHhhh
Confidence 379999999999 8999999998876
No 319
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=30.55 E-value=1.3e+02 Score=23.68 Aligned_cols=41 Identities=15% Similarity=0.296 Sum_probs=30.7
Q ss_pred HHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCcc
Q psy2902 191 KMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEV 234 (945)
Q Consensus 191 ~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~ 234 (945)
.+.+..+.++... .-.++.|+ .+..+|..+.+.|...||..
T Consensus 3 ~i~~~i~~F~~~~--~~~~~fpp-m~~~~R~~vH~lA~~~~L~S 43 (58)
T cd02646 3 DIKDEIEAFLLDS--RDSLSFPP-MDKHGRKTIHKLANCYNLKS 43 (58)
T ss_pred HHHHHHHHHHhCC--CceEecCC-CCHHHHHHHHHHHHHcCCcc
Confidence 4455555555443 45678888 89999999999999999864
No 320
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=30.23 E-value=69 Score=25.38 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Q psy2902 899 HVTIETPVQLTEYQKKLLRSLETSI 923 (945)
Q Consensus 899 ~~~i~~p~~l~~~~~~~~~~~~~~~ 923 (945)
.-...||+.||+.+|..+.+++..+
T Consensus 16 ~~~l~Fpp~ls~~eR~~vH~~a~~~ 40 (59)
T cd06007 16 NEEYEFPSSLTNHERAVIHRLCRKL 40 (59)
T ss_pred ccEEEcCCCCCHHHHHHHHHHHHHc
Confidence 3567899999999999999999864
No 321
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.29 E-value=35 Score=40.19 Aligned_cols=40 Identities=28% Similarity=0.584 Sum_probs=23.7
Q ss_pred ccCCCCCccccc-cCcCcccCCCCCCCceEeEeeceeeeeecCCCCCCce
Q psy2902 717 DICKSCYGNGAK-KGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAG 765 (945)
Q Consensus 717 ~~C~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g 765 (945)
..|+.|++.=.. .......|+.|+-+-. ....|+.|++..
T Consensus 223 ~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~---------~~~~Cp~C~s~~ 263 (505)
T TIGR00595 223 LCCPNCDVSLTYHKKEGKLRCHYCGYQEP---------IPKTCPQCGSED 263 (505)
T ss_pred cCCCCCCCceEEecCCCeEEcCCCcCcCC---------CCCCCCCCCCCe
Confidence 457888655432 2234557888854332 466788887753
No 322
>KOG1794|consensus
Probab=29.26 E-value=1.4e+02 Score=31.78 Aligned_cols=66 Identities=23% Similarity=0.253 Sum_probs=38.6
Q ss_pred HHHHHHHHcCCCCCC--CCcEEEecCcccc-HHHHHHHHHHhCC----CCCCCCCCCchhhhhHHHhhhhccC
Q psy2902 389 PCRIAIKDAGIKVSD--INDIILVGGMTRM-PKVQEKVKEFFGK----DPRRDINPDEAVAVGAAIQGSVLSG 454 (945)
Q Consensus 389 ~i~~~l~~~~~~~~~--i~~ViLvGG~s~~-p~v~~~l~~~fg~----~~~~~~~p~~avA~GAa~~a~~~~~ 454 (945)
.|..+|.+......+ .=.|+++||.-.+ ..|++-....+.. +-.....|.+..|.|||++|+...+
T Consensus 247 ~V~aVl~~l~~~~k~g~~l~Iv~vG~V~~Sw~~l~~Gfl~sls~~~~f~~~~l~~~k~ssAvgAA~laa~~~~ 319 (336)
T KOG1794|consen 247 HVVAVLPQLPPTLKKGKTLPIVCVGGVFDSWDLLQEGFLDSLSDTRGFERVELYRPKESSAVGAAILAASLDN 319 (336)
T ss_pred HHHHHHhhcCchhcccCcceEEEEcchhhHHHHHHHHHHHHhhcccCccceEEEeecccchHHHHHHhhhhcc
Confidence 344455443332211 2369999998554 4455544433321 2233456888999999999986543
No 323
>PRK14873 primosome assembly protein PriA; Provisional
Probab=29.08 E-value=43 Score=40.79 Aligned_cols=27 Identities=11% Similarity=-0.021 Sum_probs=16.1
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHhh
Q psy2902 897 FCHVTIETPVQLTEYQKKLLRSLETSI 923 (945)
Q Consensus 897 ~v~~~i~~p~~l~~~~~~~~~~~~~~~ 923 (945)
..+..|.+|..--.+-...|+.+...+
T Consensus 620 ~~r~~~~~~~~~~~~l~~~l~~~~~~~ 646 (665)
T PRK14873 620 RVRALVRVPRARGAELAAALRRAVAVR 646 (665)
T ss_pred cEEEEEEecCccHHHHHHHHHHHHHHH
Confidence 356666777665556666666665443
No 324
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=28.57 E-value=25 Score=34.90 Aligned_cols=61 Identities=21% Similarity=0.257 Sum_probs=42.6
Q ss_pred CCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHH
Q psy2902 574 NSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQ 640 (945)
Q Consensus 574 ~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~ 640 (945)
.+.++..+|.+..+.+....++|+... ....+.. .+......+++||.+|+++.+|..|..
T Consensus 17 ~f~~d~~~L~~~yr~lq~~~HPD~~~~-----~~~~e~~-~a~~~s~~iN~AY~tL~~p~~Ra~Yll 77 (176)
T PRK03578 17 RFALDEAALDAAYRTVQAQVHPDRFAA-----AGDAEKR-VAMQWATRANEAYQTLRDPLKRARYLL 77 (176)
T ss_pred CCCCCHHHHHHHHHHHHHHHCcCCCCC-----CCHHHHH-HHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence 345778899999999999999997321 0000110 122234577899999999999999985
No 325
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=27.76 E-value=78 Score=25.16 Aligned_cols=24 Identities=4% Similarity=0.176 Sum_probs=21.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhh
Q psy2902 900 VTIETPVQLTEYQKKLLRSLETSI 923 (945)
Q Consensus 900 ~~i~~p~~l~~~~~~~~~~~~~~~ 923 (945)
-.+.||..||+.+|.++.+++..+
T Consensus 18 ~~l~f~p~lt~~eR~~vH~~a~~~ 41 (60)
T cd02640 18 RDMVFSPEFSKEERALIHQIAQKY 41 (60)
T ss_pred ceEEcCCCCCHHHHHHHHHHHHHc
Confidence 467899999999999999999864
No 326
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=27.51 E-value=75 Score=25.24 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=21.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhh
Q psy2902 900 VTIETPVQLTEYQKKLLRSLETSI 923 (945)
Q Consensus 900 ~~i~~p~~l~~~~~~~~~~~~~~~ 923 (945)
-.+.||..||+.||..+.++++.+
T Consensus 18 ~~l~F~p~ls~~eR~~vH~lA~~~ 41 (60)
T cd02641 18 TELEFPPTLSSHDRLLVHELAEEL 41 (60)
T ss_pred CcEECCCCCCHHHHHHHHHHHHHc
Confidence 357899999999999999999875
No 327
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=27.45 E-value=2.6e+02 Score=28.45 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=20.7
Q ss_pred eecCCCCCCceEEeecCCccc-CCCceEeeeeeEEEEeecCCCCCeEE
Q psy2902 755 QQTCPKCQGAGKVIPHPCLDC-NGIGRIKRNKTLEVKIPAGIENNMRI 801 (945)
Q Consensus 755 ~~~C~~C~G~g~~~~~~c~~c-~G~g~~~~~~~l~v~ip~G~~~g~~i 801 (945)
-..|..|+..+.|.+..-..- ...+. .....++++|..-...|.-+
T Consensus 119 ~l~C~aCGa~~~v~~~~~~~~~~~~~~-~~~e~~~v~Ie~l~~~G~GV 165 (201)
T PRK12336 119 MLRCDACGAHRPVKKRKASSETQREAI-EEGKTYEVEITGTGRKGDGV 165 (201)
T ss_pred EEEcccCCCCccccccccccCCCCCCC-ccCCEEEEEEEEccCCCceE
Confidence 345666666665533322221 11111 12234556666555555544
No 328
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=27.01 E-value=1.1e+02 Score=24.40 Aligned_cols=31 Identities=16% Similarity=0.211 Sum_probs=26.8
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHHHHcCCccc
Q psy2902 205 TEAVITVPAYFNDAQRQATKDAGRIAGLEVK 235 (945)
Q Consensus 205 ~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~v 235 (945)
..-.++.|+.+++.+|+.+...|...||...
T Consensus 16 ~~~eL~Fp~~ls~~eRriih~la~~lGL~~~ 46 (60)
T cd02639 16 MRDELAFPSSLSPAERRIVHLLASRLGLNHV 46 (60)
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHcCCceE
Confidence 3556788999999999999999999999653
No 329
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=26.86 E-value=31 Score=35.59 Aligned_cols=12 Identities=42% Similarity=1.229 Sum_probs=8.6
Q ss_pred ccCCCCCCCceE
Q psy2902 734 ISCFTCSGQGQV 745 (945)
Q Consensus 734 ~~C~~C~G~G~~ 745 (945)
.+||+|.|+|++
T Consensus 39 vtCPTCqGtGrI 50 (238)
T PF07092_consen 39 VTCPTCQGTGRI 50 (238)
T ss_pred CcCCCCcCCccC
Confidence 367777777776
No 330
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=26.13 E-value=43 Score=26.08 Aligned_cols=48 Identities=35% Similarity=0.387 Sum_probs=33.3
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhH
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSE 633 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~ 633 (945)
..+.++|.+....+....++|...-. .......+..+++||++|+++.
T Consensus 12 ~~~~~~ik~ay~~l~~~~HPD~~~~~----------~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 12 DASLDEIKKAYRKLALKYHPDKNPGD----------KEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCc----------hHHHHHHHHHHHHHHHHHcCCC
Confidence 36788999999888888888874311 0112235667789999998764
No 331
>PF07066 DUF3882: Lactococcus phage M3 protein; InterPro: IPR009773 This family consists of several Lactococcus bacteriophage 712, middle-3 (M3) proteins of around 160 residues in length. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The function of this family is unknown.
Probab=25.97 E-value=74 Score=29.97 Aligned_cols=23 Identities=26% Similarity=0.575 Sum_probs=18.7
Q ss_pred CCceEEEEcCccc-----eEEEEEeCCc
Q psy2902 70 MSKIIGIDLGTTN-----SCVSIIEGSQ 92 (945)
Q Consensus 70 m~~viGID~GTt~-----s~va~~~~~~ 92 (945)
|+.+++|||-||+ +..|+++.+.
T Consensus 1 ~~~~LslD~STs~~~~~gTG~A~~~~~~ 28 (159)
T PF07066_consen 1 MKKVLSLDFSTSSKKGEGTGWAFFKGSD 28 (159)
T ss_pred CCeeEEEEEecccCCCCCceeEEecCCe
Confidence 5668999999998 8888887443
No 332
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=25.57 E-value=34 Score=24.03 Aligned_cols=12 Identities=17% Similarity=0.346 Sum_probs=6.2
Q ss_pred ccCCCCCccccc
Q psy2902 717 DICKSCYGNGAK 728 (945)
Q Consensus 717 ~~C~~C~G~G~~ 728 (945)
.+|+.|+..-..
T Consensus 3 i~Cp~C~~~y~i 14 (36)
T PF13717_consen 3 ITCPNCQAKYEI 14 (36)
T ss_pred EECCCCCCEEeC
Confidence 346666555443
No 333
>KOG3803|consensus
Probab=25.29 E-value=48 Score=38.44 Aligned_cols=71 Identities=23% Similarity=0.357 Sum_probs=0.0
Q ss_pred CccceeeccccccccccceeeEeeccccccCC--CCCccccccCc-------------------------CcccCCCCCC
Q psy2902 689 GKDLRYNLEITLEQAAYGFNTSIRVPSWDICK--SCYGNGAKKGT-------------------------SPISCFTCSG 741 (945)
Q Consensus 689 g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~--~C~G~G~~~~~-------------------------~~~~C~~C~G 741 (945)
|.+-....-.+....|.+..-.+.-.+...|| .|.|+|.+.+- ....|+.
T Consensus 311 ge~r~~k~~d~vrk~yy~kdpsr~ekre~kcptpgcdgtghvtglyphhrSlSgcPhk~rippeILamhe~vlkcpt--- 387 (968)
T KOG3803|consen 311 GERRQTKVIDMVRKIYYNKDPSRPEKRETKCPTPGCDGTGHVTGLYPHHRSLSGCPHKDRIPPEILAMHENVLKCPT--- 387 (968)
T ss_pred CccccccchhhhhcccccCCCCchhhccccCCCCCCCCCccccccccccccccCCCccccCCHHHHHHHHHhhcCCC---
Q ss_pred CceEeEeeceeeeeecCCCCCCceEEeecCCcccCCCc
Q psy2902 742 QGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIG 779 (945)
Q Consensus 742 ~G~~~~~~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g 779 (945)
+.|.|+|.+..++-.+|.+.|
T Consensus 388 -----------------PgctgrghvnsnrnTHrslSg 408 (968)
T KOG3803|consen 388 -----------------PGCTGRGHVNSNRNTHRSLSG 408 (968)
T ss_pred -----------------CCCCCCCCCCCCccccccccC
No 334
>KOG0797|consensus
Probab=25.12 E-value=30 Score=39.36 Aligned_cols=51 Identities=27% Similarity=0.356 Sum_probs=39.4
Q ss_pred CCcEEEecCccccHHHHHHHHHHhC------CC------C---CCCCCCCchhhhhHHHhhhhccC
Q psy2902 404 INDIILVGGMTRMPKVQEKVKEFFG------KD------P---RRDINPDEAVAVGAAIQGSVLSG 454 (945)
Q Consensus 404 i~~ViLvGG~s~~p~v~~~l~~~fg------~~------~---~~~~~p~~avA~GAa~~a~~~~~ 454 (945)
-+.|++|||+...|.+...|++... .. + -+..||...+=.|||++|.+-..
T Consensus 527 ~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~~ 592 (618)
T KOG0797|consen 527 FSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDFV 592 (618)
T ss_pred hhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHHHH
Confidence 4789999999999999999988763 11 1 12367888888999999976543
No 335
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=24.92 E-value=48 Score=31.06 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=15.0
Q ss_pred EEEEcCccceEEEEEeC
Q psy2902 74 IGIDLGTTNSCVSIIEG 90 (945)
Q Consensus 74 iGID~GTt~s~va~~~~ 90 (945)
+|||+|+..+.+|+.+.
T Consensus 1 laiD~G~kriGvA~~d~ 17 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDI 17 (130)
T ss_pred CeEccCCCeEEEEEECC
Confidence 58999999999998755
No 336
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=24.61 E-value=45 Score=30.39 Aligned_cols=27 Identities=19% Similarity=0.357 Sum_probs=13.6
Q ss_pred cccCCCCCccccccCcCcccCCCCCCCc
Q psy2902 716 WDICKSCYGNGAKKGTSPISCFTCSGQG 743 (945)
Q Consensus 716 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G 743 (945)
...|+.|+....... ....||.|++..
T Consensus 70 ~~~C~~Cg~~~~~~~-~~~~CP~Cgs~~ 96 (113)
T PRK12380 70 QAWCWDCSQVVEIHQ-HDAQCPHCHGER 96 (113)
T ss_pred EEEcccCCCEEecCC-cCccCcCCCCCC
Confidence 355777764443322 122366666554
No 337
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=24.51 E-value=48 Score=37.92 Aligned_cols=61 Identities=25% Similarity=0.313 Sum_probs=35.1
Q ss_pred HHHHHHHHHHH-----HHcCCcc------ceecchhHHHHHHhccCCC---CCCC-ceEEEEEeCCcceEEEEEEE
Q psy2902 217 DAQRQATKDAG-----RIAGLEV------KRIINEPTAAALAFGLDKS---GKSD-RNIVVYDLGGGTFDVSIIEI 277 (945)
Q Consensus 217 ~~qr~~l~~Aa-----~~AGl~~------v~li~Ep~AAAl~~~~~~~---~~~~-~~vlVvD~GggT~dvsv~~~ 277 (945)
+..|+++++.. +.=|++. ..+++-|.|+..+.-.-.. ...+ ..+|++|+||-|||+--+.-
T Consensus 193 epaR~~I~~vF~~~Iv~akGl~~i~~~~~~~i~PTP~AV~~a~~~la~~~~~~~g~g~ll~VDIGGATTDvhSv~~ 268 (463)
T TIGR01319 193 EAAREAICDIFLKKIVEAKGLDNAEDFIGEELMPTPAAVFEAAKAIAEGTDKDDGIGDFILIDIGGATTDVHSAAA 268 (463)
T ss_pred hHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhccccccCcCCEEEEEcCccccchhhccC
Confidence 44566666652 2225533 2356777776554422221 0112 34899999999999987643
No 338
>PRK00420 hypothetical protein; Validated
Probab=24.50 E-value=50 Score=29.94 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=10.1
Q ss_pred ccCCCCCccccccCcCcccCCCC
Q psy2902 717 DICKSCYGNGAKKGTSPISCFTC 739 (945)
Q Consensus 717 ~~C~~C~G~G~~~~~~~~~C~~C 739 (945)
..||.|+..=.........||.|
T Consensus 24 ~~CP~Cg~pLf~lk~g~~~Cp~C 46 (112)
T PRK00420 24 KHCPVCGLPLFELKDGEVVCPVH 46 (112)
T ss_pred CCCCCCCCcceecCCCceECCCC
Confidence 44566554333322333444444
No 339
>PRK07058 acetate kinase; Provisional
Probab=24.41 E-value=3.5e+02 Score=30.53 Aligned_cols=43 Identities=12% Similarity=0.213 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCcc-ccHHHHHHHHHHh
Q psy2902 381 ELITRTIEPCRIAIKDAGIKVSDINDIILVGGMT-RMPKVQEKVKEFF 427 (945)
Q Consensus 381 ~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~v~~~l~~~f 427 (945)
-.+.++...|-...... ..+|.|+++||-+ .++.+++.+.+.+
T Consensus 300 ~f~yri~k~IGa~~a~L----g~vDaiVfTGGIgEns~~vr~~i~~~l 343 (396)
T PRK07058 300 LFALRIAGEIARLAATL----GGLDAVVFTAGIGEHQPAIRAAVCERL 343 (396)
T ss_pred HHHHHHHHHHHHHHHHh----CCCCEEEECCccccCcHHHHHHHHhhh
Confidence 33444444443333332 2489999999999 9999999998876
No 340
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=24.41 E-value=62 Score=41.38 Aligned_cols=59 Identities=17% Similarity=0.298 Sum_probs=33.9
Q ss_pred eecccc-ccccccceeeEeeccccccCCCCCccccccCcCcccCCCCCCCceEeEeeceeeeeecCCCCCCceE
Q psy2902 694 YNLEIT-LEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGK 766 (945)
Q Consensus 694 ~~l~~~-~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~ 766 (945)
+++++. +.|..||.... ...|+.|+..-. ....|+.|+..=.. ..- ....|+.|+-.-.
T Consensus 661 ieVEV~~rkCPkCG~~t~-----~~fCP~CGs~te----~vy~CPsCGaev~~----des-~a~~CP~CGtplv 720 (1337)
T PRK14714 661 IEVEVGRRRCPSCGTETY-----ENRCPDCGTHTE----PVYVCPDCGAEVPP----DES-GRVECPRCDVELT 720 (1337)
T ss_pred EEEEEEEEECCCCCCccc-----cccCcccCCcCC----CceeCccCCCccCC----Ccc-ccccCCCCCCccc
Confidence 344444 45667776422 238999988742 23479999773110 001 1347999987653
No 341
>PF12991 DUF3875: Domain of unknown function, B. Theta Gene description (DUF3875); InterPro: IPR024451 This domain of unknown function is found in proteins from Bacteroidetes, including the conjugation system ATPase, TraG.
Probab=24.38 E-value=87 Score=24.09 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=18.4
Q ss_pred CCccEEEEEEEECCCC--CCHHHHHH
Q psy2902 892 IPGDLFCHVTIETPVQ--LTEYQKKL 915 (945)
Q Consensus 892 ~~Gdl~v~~~i~~p~~--l~~~~~~~ 915 (945)
..||+.|-|+|.+|+- +|+++.+.
T Consensus 26 k~gDiTv~f~v~LPEiFtls~~eYea 51 (54)
T PF12991_consen 26 KNGDITVAFRVELPEIFTLSEAEYEA 51 (54)
T ss_pred cCCCEEEEEEecCCeeEEechhHhHH
Confidence 4699999999999987 45554443
No 342
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.36 E-value=62 Score=26.81 Aligned_cols=8 Identities=50% Similarity=1.680 Sum_probs=4.0
Q ss_pred ecCCCCCC
Q psy2902 756 QTCPKCQG 763 (945)
Q Consensus 756 ~~C~~C~G 763 (945)
+.||.|.|
T Consensus 22 D~CPrCrG 29 (88)
T COG3809 22 DYCPRCRG 29 (88)
T ss_pred eeCCcccc
Confidence 34555554
No 343
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=23.86 E-value=3.2e+02 Score=28.99 Aligned_cols=52 Identities=33% Similarity=0.575 Sum_probs=33.7
Q ss_pred CCCcEEEecCccccHH----HHHHHHHHh---C--CCCCC--CCCCCchhhhhHHHhhhhccC
Q psy2902 403 DINDIILVGGMTRMPK----VQEKVKEFF---G--KDPRR--DINPDEAVAVGAAIQGSVLSG 454 (945)
Q Consensus 403 ~i~~ViLvGG~s~~p~----v~~~l~~~f---g--~~~~~--~~~p~~avA~GAa~~a~~~~~ 454 (945)
..+.|+|.|-++++|. +++.|++.| | ..+.. ..--.--.|.|||+.|-.++|
T Consensus 273 ~pd~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~KeaA~GaAiiAnaiAG 335 (374)
T COG2441 273 YPDAIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAKEAAEGAAIIANAIAG 335 (374)
T ss_pred CcceEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhhhhccchhhhhhhhcc
Confidence 4578999999999864 566667666 2 22221 111223467899998877666
No 344
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=23.85 E-value=47 Score=30.51 Aligned_cols=28 Identities=18% Similarity=0.207 Sum_probs=14.0
Q ss_pred cccCCCCCccccccCcCcccCCCCCCCc
Q psy2902 716 WDICKSCYGNGAKKGTSPISCFTCSGQG 743 (945)
Q Consensus 716 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G 743 (945)
...|..|+-...........||.|++..
T Consensus 71 ~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~ 98 (117)
T PRK00564 71 ELECKDCSHVFKPNALDYGVCEKCHSKN 98 (117)
T ss_pred EEEhhhCCCccccCCccCCcCcCCCCCc
Confidence 3557777633333222223477776654
No 345
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=23.71 E-value=61 Score=20.56 Aligned_cols=7 Identities=43% Similarity=1.327 Sum_probs=3.3
Q ss_pred ecCCCCC
Q psy2902 756 QTCPKCQ 762 (945)
Q Consensus 756 ~~C~~C~ 762 (945)
-.||.|+
T Consensus 17 f~CPnCG 23 (24)
T PF07754_consen 17 FPCPNCG 23 (24)
T ss_pred EeCCCCC
Confidence 4455553
No 346
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.34 E-value=63 Score=38.10 Aligned_cols=50 Identities=22% Similarity=0.481 Sum_probs=30.3
Q ss_pred ccCCCCCccccccCcCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEEeecCCcccCCCc
Q psy2902 717 DICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIG 779 (945)
Q Consensus 717 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g 779 (945)
..|..|+- ...|+.|.+.=..-.. ...-.|+.|+-.-. .+..|..|.+..
T Consensus 214 ~~C~~Cg~--------~~~C~~C~~~l~~h~~----~~~l~Ch~Cg~~~~-~~~~Cp~C~s~~ 263 (505)
T TIGR00595 214 LLCRSCGY--------ILCCPNCDVSLTYHKK----EGKLRCHYCGYQEP-IPKTCPQCGSED 263 (505)
T ss_pred eEhhhCcC--------ccCCCCCCCceEEecC----CCeEEcCCCcCcCC-CCCCCCCCCCCe
Confidence 45777743 3479999765332100 12346888875433 567899997743
No 347
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=23.29 E-value=65 Score=23.45 Aligned_cols=8 Identities=38% Similarity=1.240 Sum_probs=4.1
Q ss_pred ecCCCCCC
Q psy2902 756 QTCPKCQG 763 (945)
Q Consensus 756 ~~C~~C~G 763 (945)
..|+.|++
T Consensus 27 ~~CP~Cg~ 34 (42)
T PF09723_consen 27 VPCPECGS 34 (42)
T ss_pred CcCCCCCC
Confidence 34555554
No 348
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=23.28 E-value=59 Score=29.49 Aligned_cols=18 Identities=39% Similarity=0.907 Sum_probs=7.7
Q ss_pred CCCCCCceEEeecCCccc
Q psy2902 758 CPKCQGAGKVIPHPCLDC 775 (945)
Q Consensus 758 C~~C~G~g~~~~~~c~~c 775 (945)
||.|++.-.|..-.|..|
T Consensus 1 CPvCg~~l~vt~l~C~~C 18 (113)
T PF09862_consen 1 CPVCGGELVVTRLKCPSC 18 (113)
T ss_pred CCCCCCceEEEEEEcCCC
Confidence 444444444444444444
No 349
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=23.22 E-value=49 Score=30.19 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=12.3
Q ss_pred ccCCCCCccccccCcCcccCCCCCCCc
Q psy2902 717 DICKSCYGNGAKKGTSPISCFTCSGQG 743 (945)
Q Consensus 717 ~~C~~C~G~G~~~~~~~~~C~~C~G~G 743 (945)
..|..|+-.-.........||.|++..
T Consensus 71 ~~C~~Cg~~~~~~~~~~~~CP~Cgs~~ 97 (114)
T PRK03681 71 CWCETCQQYVTLLTQRVRRCPQCHGDM 97 (114)
T ss_pred EEcccCCCeeecCCccCCcCcCcCCCC
Confidence 456666533222222224466666543
No 350
>PF07865 DUF1652: Protein of unknown function (DUF1652); InterPro: IPR012448 The proteins in this entry have not been characterised.
Probab=22.98 E-value=3e+02 Score=22.60 Aligned_cols=49 Identities=16% Similarity=0.337 Sum_probs=36.1
Q ss_pred EEEEEEECCCccEEEEEeecCCCceeEEEec---cCCCCcHHHHHHHHHHHHH
Q psy2902 542 IEVTFDIDANGILHVTAKDKKTGKENKITIK---ANSGLTEEEIKKMVQSAEA 591 (945)
Q Consensus 542 i~v~~~~d~~g~l~v~a~~~~~g~~~~~~i~---~~~~~~~~~i~~~~~~~~~ 591 (945)
....+.++.++.++|...|..+|.. .+++. ...-.|..+|.+++.++..
T Consensus 15 l~C~ct~~~~~smtvrl~d~~sg~~-~l~vtGI~~~~l~s~rdI~~LI~eLr~ 66 (69)
T PF07865_consen 15 LRCECTIAPDGSMTVRLFDPASGRV-ELTVTGISTSALNSSRDIVRLIAELRA 66 (69)
T ss_pred ceeEEEECCCCcEEEEEecCCCCcE-EEEEcCcCHHHcCCHHHHHHHHHHHHH
Confidence 5677889999999999999999966 23333 2234678888888876543
No 351
>PLN02377 3-ketoacyl-CoA synthase
Probab=22.71 E-value=1.6e+02 Score=34.46 Aligned_cols=57 Identities=7% Similarity=0.105 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEE-ecCccccHHHHHHHHHHhCCC
Q psy2902 374 KLELLVDELITRTIEPCRIAIKDAGIKVSDINDIIL-VGGMTRMPKVQEKVKEFFGKD 430 (945)
Q Consensus 374 ~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViL-vGG~s~~p~v~~~l~~~fg~~ 430 (945)
.++...++...-+...++++|+++++++.|||.|+. +.+....|.+-.+|.+.+|.+
T Consensus 164 ~~~~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LGlr 221 (502)
T PLN02377 164 SMAAAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYKLR 221 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhCCC
Confidence 344555555555667788899999999999999877 444446899999999999865
No 352
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=22.62 E-value=41 Score=22.60 Aligned_cols=22 Identities=18% Similarity=0.440 Sum_probs=6.5
Q ss_pred cCCCCCccccccCcCcccCCCC
Q psy2902 718 ICKSCYGNGAKKGTSPISCFTC 739 (945)
Q Consensus 718 ~C~~C~G~G~~~~~~~~~C~~C 739 (945)
.|+.|+....-.......|+.|
T Consensus 4 ~Cp~C~se~~y~D~~~~vCp~C 25 (30)
T PF08274_consen 4 KCPLCGSEYTYEDGELLVCPEC 25 (30)
T ss_dssp --TTT-----EE-SSSEEETTT
T ss_pred CCCCCCCcceeccCCEEeCCcc
Confidence 3555554444433334444444
No 353
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=22.00 E-value=74 Score=35.52 Aligned_cols=44 Identities=20% Similarity=0.230 Sum_probs=30.6
Q ss_pred CCCcEEEecCccccHHHHHHHHHHhCC--CCC--CCCCCCchhhhhHH
Q psy2902 403 DINDIILVGGMTRMPKVQEKVKEFFGK--DPR--RDINPDEAVAVGAA 446 (945)
Q Consensus 403 ~i~~ViLvGG~s~~p~v~~~l~~~fg~--~~~--~~~~p~~avA~GAa 446 (945)
+++.|++.||.+..+.+.+.+.+.+.. ++. -..+-.++.|.||.
T Consensus 293 ~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg~~e~~ala~ga~ 340 (351)
T TIGR02707 293 KVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPGEDEMEALAEGAL 340 (351)
T ss_pred CCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCCcHHHHHHHHhHH
Confidence 468999999999999888988888742 322 12223456677764
No 354
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=22.00 E-value=3.8e+02 Score=30.57 Aligned_cols=55 Identities=25% Similarity=0.286 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCC
Q psy2902 377 LLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDP 431 (945)
Q Consensus 377 ~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~ 431 (945)
++-..+++.+..++.+.+.++++...+|..++++|=++-..++...=-+.++..+
T Consensus 57 ~L~~~i~~~i~~li~~l~~~~gi~~~~I~~i~i~GNt~M~hLllGl~~~~L~~~P 111 (412)
T PF14574_consen 57 ELQRLIRETINELIEELLEKAGISPEDIYEIVIVGNTTMLHLLLGLDPEGLGRAP 111 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT--GGGEEEEEEEE-HHHHHHHHT---GGGSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEecHHHHHHHcCCChHHhccCC
Confidence 3444455666777888889999999999999999977665555544444444433
No 355
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=21.49 E-value=2.1e+02 Score=25.53 Aligned_cols=44 Identities=23% Similarity=0.412 Sum_probs=29.4
Q ss_pred eEEEEEEECCC-ccEEEEEeecCCCceeEEEeccCCCCcHHHHHHHHHHHHH
Q psy2902 541 QIEVTFDIDAN-GILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEA 591 (945)
Q Consensus 541 ~i~v~~~~d~~-g~l~v~a~~~~~g~~~~~~i~~~~~~~~~~i~~~~~~~~~ 591 (945)
...+.|.+|.+ |.+.|++.|..||+... .+++|++-++.+.+..
T Consensus 54 ~~~l~F~vde~~~~~vVkViD~~T~eVIR-------qIP~Ee~l~l~~~l~e 98 (107)
T PF03646_consen 54 NTSLRFSVDEESGRVVVKVIDKETGEVIR-------QIPPEELLDLAKRLRE 98 (107)
T ss_dssp S--EEEEEEEETTEEEEEEEETTT-SEEE-------EE-HHHHHHHHHHHHH
T ss_pred CCceEEEEecCCCcEEEEEEECCCCcEEE-------eCCcHHHHHHHHHHHH
Confidence 46688888864 78899999999997621 1448888777766554
No 356
>PRK12408 glucokinase; Provisional
Probab=21.35 E-value=62 Score=35.94 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=27.8
Q ss_pred HHcCCccceecchhHHHHHHhccCC---------CCCCC-ceEEEEEeCCc
Q psy2902 228 RIAGLEVKRIINEPTAAALAFGLDK---------SGKSD-RNIVVYDLGGG 268 (945)
Q Consensus 228 ~~AGl~~v~li~Ep~AAAl~~~~~~---------~~~~~-~~vlVvD~Ggg 268 (945)
+..|++.+.+++|-.|||++-.... ..... ..++++=+|.|
T Consensus 106 ~~~~~~~V~l~ND~naaa~gE~~~~~~~~~~~~g~~~~~~~~~~~i~~GTG 156 (336)
T PRK12408 106 AQLGLQAVHLVNDFEAVAYAAPYMEGNQVLQLSGPAQAAAGPALVLGPGTG 156 (336)
T ss_pred HHcCCCeEEEeecHHHHHcccccCCHhHeeeecCCCCCCCCcEEEEECCCc
Confidence 3468877899999999999764431 11121 46777777776
No 357
>KOG1386|consensus
Probab=21.28 E-value=8e+02 Score=28.43 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=18.8
Q ss_pred CCceEEEEEeCCcceEEEEEEE
Q psy2902 256 SDRNIVVYDLGGGTFDVSIIEI 277 (945)
Q Consensus 256 ~~~~vlVvD~GggT~dvsv~~~ 277 (945)
...++-++|+||.++.|+..--
T Consensus 160 ~~~T~G~lDlGGAS~QItFe~~ 181 (501)
T KOG1386|consen 160 RKETFGALDLGGASTQITFEPP 181 (501)
T ss_pred CcceeeeEecCCceeEEEEecC
Confidence 5678999999999999998753
No 358
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=21.15 E-value=40 Score=32.85 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=17.3
Q ss_pred eEEEecCCCeEEEEeCCCCCCCcEEEECC
Q psy2902 854 EIEAPTLNGKAFFVIPEGTQSGKIFRLRG 882 (945)
Q Consensus 854 ~~~v~~l~g~~~~~i~~~~~~g~~~~i~g 882 (945)
++.||-| .+.+|++++.|..-.|.|
T Consensus 76 ~i~IPEl----~~ei~pg~~~g~itTVEG 100 (160)
T smart00709 76 TISIPEL----DLEIPPGPLGGFITTVEG 100 (160)
T ss_pred EEEeeee----eEEecCCCCCcEEEehHH
Confidence 4455543 466888888888888855
No 359
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=20.91 E-value=61 Score=29.62 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=12.4
Q ss_pred ccCCCCCccccccCcCcccCCCCCCCc
Q psy2902 717 DICKSCYGNGAKKGTSPISCFTCSGQG 743 (945)
Q Consensus 717 ~~C~~C~G~G~~~~~~~~~C~~C~G~G 743 (945)
..|+.|+-...... ....||.|++..
T Consensus 71 ~~C~~Cg~~~~~~~-~~~~CP~Cgs~~ 96 (115)
T TIGR00100 71 CECEDCSEEVSPEI-DLYRCPKCHGIM 96 (115)
T ss_pred EEcccCCCEEecCC-cCccCcCCcCCC
Confidence 45666653322221 234466666554
No 360
>PLN03173 chalcone synthase; Provisional
Probab=20.71 E-value=2.7e+02 Score=31.61 Aligned_cols=53 Identities=23% Similarity=0.276 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCcc-ccHHHHHHHHHHhCCCC
Q psy2902 379 VDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMT-RMPKVQEKVKEFFGKDP 431 (945)
Q Consensus 379 ~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~v~~~l~~~fg~~~ 431 (945)
.+...+-..+.++++|++++++..+|+.|+.+.-+. ..|.+--.|.+.+|.+.
T Consensus 99 ~~~a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LGl~~ 152 (391)
T PLN03173 99 VVEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRS 152 (391)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhCCCc
Confidence 344555566778899999999999999988776443 58999999999998654
No 361
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=20.53 E-value=2.6e+02 Score=30.10 Aligned_cols=46 Identities=15% Similarity=0.296 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHcCCCCCCCCcEEE-ecCccccHHHHHHHHHHhCCCC
Q psy2902 386 TIEPCRIAIKDAGIKVSDINDIIL-VGGMTRMPKVQEKVKEFFGKDP 431 (945)
Q Consensus 386 i~~~i~~~l~~~~~~~~~i~~ViL-vGG~s~~p~v~~~l~~~fg~~~ 431 (945)
+...++++|+++++.+.+|+.++. +..++-.|.+-.+|.+.|+...
T Consensus 87 ~f~av~~LL~ktgv~p~dIdiLVvncs~f~ptPSLsamIvnr~~mr~ 133 (290)
T PF08392_consen 87 IFGAVDDLLAKTGVKPSDIDILVVNCSLFNPTPSLSAMIVNRYGMRS 133 (290)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEECcCCCcCCcHHHHHHHHhCCCc
Confidence 455677899999999999998654 6678899999999999998654
No 362
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=20.34 E-value=91 Score=31.86 Aligned_cols=35 Identities=26% Similarity=0.256 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHcCCc---cceecchhHHHHHHhcc
Q psy2902 216 NDAQRQATKDAGRIAGLE---VKRIINEPTAAALAFGL 250 (945)
Q Consensus 216 ~~~qr~~l~~Aa~~AGl~---~v~li~Ep~AAAl~~~~ 250 (945)
...-.+.+.+|....|++ ++.++++.+|..++..+
T Consensus 167 G~dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~Y 204 (206)
T PF00349_consen 167 GKDVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGAY 204 (206)
T ss_dssp TSBHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHHT
T ss_pred CCccchhHHHHHHHhcccCcceEEEEECCHHHhhhhhc
Confidence 444567788888888886 46689999998876543
No 363
>PLN03172 chalcone synthase family protein; Provisional
Probab=20.18 E-value=2.7e+02 Score=31.60 Aligned_cols=58 Identities=22% Similarity=0.346 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCcc-ccHHHHHHHHHHhCCCC
Q psy2902 374 KLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMT-RMPKVQEKVKEFFGKDP 431 (945)
Q Consensus 374 ~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~v~~~l~~~fg~~~ 431 (945)
..+...+...+-..+.++++|++++++..+|+.|+++-.+. .+|.+--.|.+.+|.+.
T Consensus 94 r~~~~~~~a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LGl~~ 152 (393)
T PLN03172 94 RQDMVVVEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLKP 152 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhCCCC
Confidence 33334445556666778899999999999999988766444 69999999999998654
No 364
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=20.09 E-value=51 Score=31.72 Aligned_cols=18 Identities=44% Similarity=0.737 Sum_probs=14.1
Q ss_pred eEEEEcCccceEEEEEeC
Q psy2902 73 IIGIDLGTTNSCVSIIEG 90 (945)
Q Consensus 73 viGID~GTt~s~va~~~~ 90 (945)
|+|||-|++++..|+++.
T Consensus 1 ILGIDPgl~~tG~avi~~ 18 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEE 18 (149)
T ss_dssp EEEEE--SSEEEEEEEEE
T ss_pred CEEECCCCCCeeEEEEEe
Confidence 599999999999999854
Done!