RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2902
(945 letters)
>gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional.
Length = 627
Score = 1115 bits (2887), Expect = 0.0
Identities = 398/565 (70%), Positives = 479/565 (84%), Gaps = 10/565 (1%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
M KIIGIDLGTTNSCV+++EG +PKVIEN+EGARTTPSV+A+ ++GE LVG PAKRQAVT
Sbjct: 1 MGKIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVT 60
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVL 189
NP+NTI++ KRL+GR+ ++EVQKDI L+PYKIVKADNGDAW+ + GKK P +ISA +L
Sbjct: 61 NPENTIFSIKRLMGRR--DEEVQKDIKLVPYKIVKADNGDAWVEIDGKKYTPQEISAMIL 118
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
+K+KK AEDYLG ++TEAVITVPAYFNDAQRQATKDAG+IAGLEV RIINEPTAAALA+G
Sbjct: 119 QKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYG 178
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
LDK K D I+VYDLGGGTFDVSI+EI G+ FEVLSTNGDT LGG+DFDQRIIDY
Sbjct: 179 LDK--KGDEKILVYDLGGGTFDVSILEI----GDGVFEVLSTNGDTHLGGDDFDQRIIDY 232
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLK 369
+ DEF K NGIDLRKD +ALQR+K +AE+AKIELSS++QTEIN P+I P HL +K
Sbjct: 233 LADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIK 292
Query: 370 ITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK 429
+TRAK E L ++L+ RTIEPC+ A+KDAG+ VSDI+++ILVGG TRMP VQE VKEFFGK
Sbjct: 293 LTRAKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGK 352
Query: 430 DPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIP 489
+P + +NPDE VA+GAAIQG VL+GD KD+LLLDVTPLSLGIET+GG+MTK+I++NTTIP
Sbjct: 353 EPNKGVNPDEVVAIGAAIQGGVLAGDVKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIP 412
Query: 490 TKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549
TK SQVFSTA DNQPAVT+ V QGEREM + NK LG FNL GIPPA RG+PQIEVTFDID
Sbjct: 413 TKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDID 472
Query: 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHG 609
ANGI+HV+AKDK TGKE ITI A+SGL++EEI++MV+ AEANAEEDK+ +EL E+RN
Sbjct: 473 ANGIVHVSAKDKGTGKEQSITITASSGLSDEEIERMVKDAEANAEEDKKRKELVEARNQA 532
Query: 610 ESLIHSTKKSLKIKEAYEVLSDSEK 634
+SLI+ T+K+L KE + + EK
Sbjct: 533 DSLIYQTEKTL--KELGDKVPADEK 555
>gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK. Members of this
family are the chaperone DnaK, of the DnaK-DnaJ-GrpE
chaperone system. All members of the seed alignment were
taken from completely sequenced bacterial or archaeal
genomes and (except for Mycoplasma sequence) found
clustered with other genes of this systems. This model
excludes DnaK homologs that are not DnaK itself, such as
the heat shock cognate protein HscA (TIGR01991).
However, it is not designed to distinguish among DnaK
paralogs in eukaryotes. Note that a number of dnaK genes
have shadow ORFs in the same reverse (relative to dnaK)
reading frame, a few of which have been assigned
glutamate dehydrogenase activity. The significance of
this observation is unclear; lengths of such shadow ORFs
are highly variable as if the presumptive protein
product is not conserved [Protein fate, Protein folding
and stabilization].
Length = 595
Score = 925 bits (2393), Expect = 0.0
Identities = 373/563 (66%), Positives = 450/563 (79%), Gaps = 10/563 (1%)
Query: 72 KIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNP 131
KIIGIDLGTTNSCV+++EG +P VI N+EGARTTPSV+A+ +NGE LVG PAKRQAVTNP
Sbjct: 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNP 60
Query: 132 KNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRK 191
+NTIY+ KR +GR+F EV ++ +PYK+V D GD + V GK+ P +ISA +L+K
Sbjct: 61 ENTIYSIKRFMGRRF--DEVTEEAKRVPYKVV-GDGGDVRVKVDGKEYTPQEISAMILQK 117
Query: 192 MKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFGLD 251
+KK AE YLG ++TEAVITVPAYFNDAQRQATKDAG+IAGLEV RIINEPTAAALA+GLD
Sbjct: 118 LKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 177
Query: 252 KSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYIL 311
KS K D I+V+DLGGGTFDVSI+EI G+ FEVLST GDT LGG+DFDQRIID++
Sbjct: 178 KSKK-DEKILVFDLGGGTFDVSILEI----GDGVFEVLSTAGDTHLGGDDFDQRIIDWLA 232
Query: 312 DEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKIT 371
DEF K GIDL KD +ALQR+K +AE+AKIELSS TEIN P+I P HL + +T
Sbjct: 233 DEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLT 292
Query: 372 RAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDP 431
RAK E L +L+ RT EP R A+KDAG+ SDI+++ILVGG TR+P VQE VK+FFGK+P
Sbjct: 293 RAKFEELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEP 352
Query: 432 RRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIPTK 491
+ +NPDE VA+GAAIQG VL GD KD+LLLDVTPLSLGIET+GG+MTK+I++NTTIPTK
Sbjct: 353 NKSVNPDEVVAIGAAIQGGVLKGDVKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTK 412
Query: 492 FSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDIDAN 551
SQVFSTA DNQPAV + V QGER M + NK LG F L GIPPA RG+PQIEVTFDIDAN
Sbjct: 413 KSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDAN 472
Query: 552 GILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGES 611
GILHV+AKDK TGKE ITI A+SGL+EEEI++MV+ AEANAEEDK+ +E E+RN+ +S
Sbjct: 473 GILHVSAKDKGTGKEQSITITASSGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADS 532
Query: 612 LIHSTKKSLKIKEAYEVLSDSEK 634
L + +K+L KEA + L EK
Sbjct: 533 LAYQAEKTL--KEAGDKLPAEEK 553
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 878 bits (2272), Expect = 0.0
Identities = 357/566 (63%), Positives = 446/566 (78%), Gaps = 14/566 (2%)
Query: 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPK 132
+IGIDLGTTNSCV+++EG P+VI N EG RTTPSV+A+ E LVG AKRQAVTNPK
Sbjct: 1 VIGIDLGTTNSCVAVMEGGGPEVIANDEGNRTTPSVVAFTPK-ERLVGQAAKRQAVTNPK 59
Query: 133 NTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVR--GKKLAPPQISAEVLR 190
NT+++ KRLIGRKF++ VQ+DI +PYK+VK NGDA + VR G+ P QISA VL+
Sbjct: 60 NTVFSVKRLIGRKFSDPVVQRDIKHVPYKVVKLPNGDAGVEVRYLGETFTPEQISAMVLQ 119
Query: 191 KMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFGL 250
K+K+TAE YLG +T+AVITVPAYFNDAQRQATKDAGRIAGL V RIINEPTAAALA+GL
Sbjct: 120 KLKETAEAYLGEPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVLRIINEPTAAALAYGL 179
Query: 251 DKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYI 310
DK K +RN++V+DLGGGTFDVSI+EI G+ FEVL+TNGDT LGGEDFD R++D+
Sbjct: 180 DKKDK-ERNVLVFDLGGGTFDVSILEI----GDGVFEVLATNGDTHLGGEDFDNRLVDHF 234
Query: 311 LDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKI 370
++EF K GIDL KD ALQR++ +AE+AKIELSS+ QTEIN P+I ++ +
Sbjct: 235 VEEFKKKYGIDLSKDPRALQRLREAAEKAKIELSSN-QTEINLPFITAMA-DGKDVSGTL 292
Query: 371 TRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKD 430
TRAK E L +L RT+EP A+KDA + S+I++++LVGG TR+P VQE VKEFFGK+
Sbjct: 293 TRAKFEELCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQELVKEFFGKE 352
Query: 431 PRRDINPDEAVAVGAAIQGSVLSG--DRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTI 488
P + +NPDEAVA+GAA+Q VLSG D KD+LLLDVTPLSLGIET+GG+MTK+I +NTTI
Sbjct: 353 PSKGVNPDEAVAIGAAVQAGVLSGTFDVKDVLLLDVTPLSLGIETLGGVMTKLIPRNTTI 412
Query: 489 PTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDI 548
PTK SQ+FSTA DNQ AV ++VYQGEREM NK+LG F L+GIPPA RG+PQIEVTFDI
Sbjct: 413 PTKKSQIFSTAADNQTAVEIQVYQGEREMAPDNKLLGSFELDGIPPAPRGVPQIEVTFDI 472
Query: 549 DANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNH 608
DANGIL V+AKDK TGKE KITI A+SGL+++EI++MV+ AE A EDK+ +E E++N
Sbjct: 473 DANGILTVSAKDKGTGKEQKITITASSGLSDDEIERMVKDAEEYAAEDKKRKERIEAKNE 532
Query: 609 GESLIHSTKKSLKIKEAYEVLSDSEK 634
E ++S +KSL KE + L +++K
Sbjct: 533 AEEYVYSLEKSL--KEEGDKLPEADK 556
>gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional.
Length = 663
Score = 803 bits (2076), Expect = 0.0
Identities = 356/569 (62%), Positives = 460/569 (80%), Gaps = 10/569 (1%)
Query: 67 RRIMSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQ 126
+ I+GIDLGTTNSCV+I+EGSQPKVIENSEG RTTPSV+A+ E+G+ LVG AKRQ
Sbjct: 37 AKATGDIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQ 96
Query: 127 AVTNPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISA 186
AVTNP+NT++A KRLIGR+++E +K+ ++PYKIV+A NGDAWI +GKK +P QI A
Sbjct: 97 AVTNPENTVFATKRLIGRRYDEDATKKEQKILPYKIVRASNGDAWIEAQGKKYSPSQIGA 156
Query: 187 EVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAAL 246
VL KMK+TAE YLG ++ +AVITVPAYFND+QRQATKDAG+IAGL+V RIINEPTAAAL
Sbjct: 157 FVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAAL 216
Query: 247 AFGLDKS-GKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQR 305
AFG+DK+ GK+ I VYDLGGGTFD+SI+EI FEV +TNG+T LGGEDFDQR
Sbjct: 217 AFGMDKNDGKT---IAVYDLGGGTFDISILEILG----GVFEVKATNGNTSLGGEDFDQR 269
Query: 306 IIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVH 365
I++Y++ EF K GIDL+KD +ALQR++ +AE AKIELSS QTEIN P+I P H
Sbjct: 270 ILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKH 329
Query: 366 LNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKE 425
L +K++RAKLE L +L+ +TIEPC IKDAG+K ++ND+ILVGGMTRMPKV E VK+
Sbjct: 330 LQIKLSRAKLEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKK 389
Query: 426 FFGKDPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKN 485
FGK+P + +NPDEAVA+GAAIQ VL G+ KDLLLLDVTPLSLGIET+GG+ T++I +N
Sbjct: 390 IFGKEPSKGVNPDEAVAMGAAIQAGVLKGEIKDLLLLDVTPLSLGIETLGGVFTRLINRN 449
Query: 486 TTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVT 545
TTIPTK SQVFSTA DNQ V +KV+QGEREM + NK+LG+F+L GIPPA RG+PQIEVT
Sbjct: 450 TTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVT 509
Query: 546 FDIDANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAES 605
FD+DANGI++++A DK TGK+ +ITI+++ GL++EEI+KMV+ AE E+D++ +EL ++
Sbjct: 510 FDVDANGIMNISAVDKSTGKKQEITIQSSGGLSDEEIEKMVKEAEEYKEQDEKKKELVDA 569
Query: 606 RNHGESLIHSTKKSLKIKEAYEVLSDSEK 634
+N E+LI+S +K ++ + + +SD++K
Sbjct: 570 KNEAETLIYSVEK--QLSDLKDKISDADK 596
>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification,
protein turnover, chaperones].
Length = 579
Score = 743 bits (1921), Expect = 0.0
Identities = 339/576 (58%), Positives = 420/576 (72%), Gaps = 33/576 (5%)
Query: 70 MSKIIGIDLGTTNSCVSIIE-GSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAV 128
K IGIDLGTTNS V+++ G PKVIEN+EG R TPSV+A+ +NGE+LVG AKRQAV
Sbjct: 4 AKKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAV 63
Query: 129 TNPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEV 188
NP+NTI++ KR IGR N + V GKK P +ISA +
Sbjct: 64 DNPENTIFSIKRKIGRGSNGL-------------------KISVEVDGKKYTPEEISAMI 104
Query: 189 LRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAF 248
L K+K+ AE YLG ++T+AVITVPAYFNDAQRQATKDA RIAGL V R+INEPTAAALA+
Sbjct: 105 LTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAY 164
Query: 249 GLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIID 308
GLDK ++ ++VYDLGGGTFDVS++EI G+ FEVL+T GD LGG+DFD +ID
Sbjct: 165 GLDK--GKEKTVLVYDLGGGTFDVSLLEI----GDGVFEVLATGGDNHLGGDDFDNALID 218
Query: 309 YILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNL 368
Y++ EF GIDLR D ALQR++ +AE+AKIELSS+ QT IN P I + L
Sbjct: 219 YLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGD----IDLLK 274
Query: 369 KITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFG 428
++TRAK E L+ +L+ RTIEP A+KDAG++ SDI+ +ILVGG TR+P VQE VKEFFG
Sbjct: 275 ELTRAKFEELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFG 334
Query: 429 KDPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTI 488
K+P + INPDEAVA+GAAIQ +VLSG+ D+LLLDV PLSLGIET+GG+ T +I++NTTI
Sbjct: 335 KEPEKSINPDEAVALGAAIQAAVLSGEVPDVLLLDVIPLSLGIETLGGVRTPIIERNTTI 394
Query: 489 PTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDI 548
P K SQ FSTA D Q AV + V+QGEREM + NK LG F L+GIPPA RG+PQIEVTFDI
Sbjct: 395 PVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDI 454
Query: 549 DANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNH 608
DANGIL+VTAKD TGKE ITIKA+SGL++EEI++MV+ AEANA DK+ REL E+RN
Sbjct: 455 DANGILNVTAKDLGTGKEQSITIKASSGLSDEEIERMVEDAEANAALDKKFRELVEARNE 514
Query: 609 GESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHA 644
ESLI+S +K+LK +S+ EK I +
Sbjct: 515 AESLIYSLEKALK---EIVKVSEEEKEKIEEAITDL 547
>gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70.
Length = 621
Score = 734 bits (1898), Expect = 0.0
Identities = 325/572 (56%), Positives = 426/572 (74%), Gaps = 12/572 (2%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
M K++GIDLGTTNS V+++EG +P VI N+EG RTTPS++AY + G++LVG AKRQAV
Sbjct: 1 MGKVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVI 60
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWI--SVRGKKLAPPQISAE 187
NP+NT Y+ KR IGRKF+E + ++ + YK+ NG+ I K +P +ISA+
Sbjct: 61 NPENTFYSVKRFIGRKFSE--ISEEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQ 118
Query: 188 VLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALA 247
VLRK+ + A YLG +T+AVITVPAYFND+QRQATKDAG+IAGLEV RIINEPTAA+LA
Sbjct: 119 VLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLA 178
Query: 248 FGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRII 307
+GLDK K++ I+V+DLGGGTFDVSI+E+ G+ FEVLST+GDT LGG+DFD++I+
Sbjct: 179 YGLDK--KNNETILVFDLGGGTFDVSILEV----GDGVFEVLSTSGDTHLGGDDFDKKIV 232
Query: 308 DYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLN 367
++++ EF K GIDL KD ALQR+ +AE+AKIELS+ QTEIN P+I + P H+
Sbjct: 233 NWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIE 292
Query: 368 LKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFF 427
+TRAK E L +LI R P A+KDA + SDI++++LVGG TR+P +QE VK+
Sbjct: 293 KTLTRAKFEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLL 352
Query: 428 GKDPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTT 487
GK P + +NPDE VA+GAA+Q VL+G+ KD+LLLDVTPLSLG+ET+GG+MTK+I +NTT
Sbjct: 353 GKKPNQSVNPDEVVAIGAAVQAGVLAGEVKDILLLDVTPLSLGVETLGGVMTKIIPRNTT 412
Query: 488 IPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFD 547
IPTK S+VFSTA DNQ V + V QGERE+ NK LG F L+GIPPA RG+PQIEVTFD
Sbjct: 413 IPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFD 472
Query: 548 IDANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRN 607
IDANGIL VTAKDK TGKE ITI+ S L ++E+++MV+ AE NA EDK RE + +N
Sbjct: 473 IDANGILSVTAKDKGTGKEQSITIQGASTLPKDEVERMVKEAEKNAAEDKEKREKIDLKN 532
Query: 608 HGESLIHSTKKSLKIKEAYEVLSDSEKRIIYD 639
ESL + +K ++KE + +S+ +K I +
Sbjct: 533 QAESLCYQAEK--QLKELKDKISEEKKEKIEN 562
>gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional.
Length = 653
Score = 728 bits (1881), Expect = 0.0
Identities = 323/586 (55%), Positives = 431/586 (73%), Gaps = 13/586 (2%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
M K+IGIDLGTTNSCV+++EG +P VI NSEG RTTPS++ + ++G+ LVG AKRQAVT
Sbjct: 1 MGKVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVT 60
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVL 189
N +NT+Y+ KR IGR++++ E ++ S +PY VK + + +RG+ P +ISA +L
Sbjct: 61 NAENTVYSIKRFIGRRWDDTEEER--SRVPYTCVKGRDDTVNVQIRGRNYTPQEISAMIL 118
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
+K+K+ AE YLG +T+AVITVPAYF DAQRQATKDAG IAGLEV RIINEPTAAALA+G
Sbjct: 119 QKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAYG 178
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
LDK + ++ I+V+DLGGGTFDVSI+++ G+ FEV +T G+ LGG+DFD I+D+
Sbjct: 179 LDKQDQ-EQLILVFDLGGGTFDVSILQL----GDGVFEVKATAGNNHLGGDDFDNCIVDW 233
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLK 369
+++ F + GIDL +D +ALQR++ +AE+AKIELSS T IN P+I P HL ++
Sbjct: 234 LVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEME 293
Query: 370 ITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFF-G 428
+TRAK E L +L+ TIEP + A+KDAG+K DI+ +ILVGG TR+P VQE +++FF G
Sbjct: 294 LTRAKFEELTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGG 353
Query: 429 KDPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTI 488
K P R +NPDEAVA+GAAIQ VL G+ KDLLLLDVTPLSLGIET+G + TK+I++NTTI
Sbjct: 354 KQPDRSVNPDEAVALGAAIQAGVLGGEVKDLLLLDVTPLSLGIETLGEVFTKIIERNTTI 413
Query: 489 PTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDI 548
PT SQVFSTA D Q +V + V QGER M NK LG+F L GIPPA RG+PQIEV+F+I
Sbjct: 414 PTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEI 473
Query: 549 DANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNH 608
D NGIL V+A+D+ TG+E I I GL+ EI++M Q AE AEED+R ++L E +N
Sbjct: 474 DVNGILKVSAQDQGTGREQSIRITNTGGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQ 533
Query: 609 GESLIHSTKKSLKIKEAYEVLSDSEKRII---YDQYGHAGIDPNMS 651
+SL++S + +L KE E++S+ K+ +Q A DPN+S
Sbjct: 534 ADSLLYSYESTL--KENGELISEELKQRAEQKVEQLEAALTDPNIS 577
>gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional.
Length = 668
Score = 725 bits (1873), Expect = 0.0
Identities = 295/555 (53%), Positives = 409/555 (73%), Gaps = 12/555 (2%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
M +I+GIDLGTTNS V+++EG +P VI N+EG RTTPSV+ + ++GE+LVG A+RQ V
Sbjct: 1 MGRIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVL 60
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISL-MPYKIVKADNGDAWIS--VRGKKLAPPQISA 186
NP+NT Y KR IGR+++E + S +PY I + + G+ I ++ AP ++SA
Sbjct: 61 NPQNTFYNLKRFIGRRYDELD---PESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSA 117
Query: 187 EVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAAL 246
+LRK+ A YLG +T AVITVPAYFND+QRQAT+DAGRIAGLEV+RI+NEPTAAAL
Sbjct: 118 MILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEPTAAAL 177
Query: 247 AFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRI 306
A+GLD+S S + ++V+DLGGGTFDVS++E+ + FEV +T+GDT LGG DFD+RI
Sbjct: 178 AYGLDRS--SSQTVLVFDLGGGTFDVSLLEVGN----GVFEVKATSGDTQLGGNDFDKRI 231
Query: 307 IDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHL 366
+D++ ++F + GIDLR+D ALQR+ +AE+AKIELS T+I+ P+I + P H+
Sbjct: 232 VDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHI 291
Query: 367 NLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEF 426
++ R + E L +L+ R + P + A+KDAG+ DI++++LVGG TRMP VQ+ V+
Sbjct: 292 ETRLDRKQFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTL 351
Query: 427 FGKDPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNT 486
++P +++NPDE VAVGAAIQ +L+G+ KDLLLLDVTPLSLG+ET+GG+M K+I +NT
Sbjct: 352 IPREPNQNVNPDEVVAVGAAIQAGILAGELKDLLLLDVTPLSLGLETIGGVMKKLIPRNT 411
Query: 487 TIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTF 546
TIP + S VFST+E+NQ +V + V+QGEREM S NK LG F L GIPPA RG+PQ++V F
Sbjct: 412 TIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAF 471
Query: 547 DIDANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESR 606
DIDANGIL V+A D+ TG+E +TI+ S L+E+E+ +M+Q AEA A+ED+R RE E R
Sbjct: 472 DIDANGILQVSATDRTTGREQSVTIQGASTLSEQEVNRMIQEAEAKADEDRRRRERIEKR 531
Query: 607 NHGESLIHSTKKSLK 621
N +LI ++ L+
Sbjct: 532 NRALTLIAQAERRLR 546
>gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein;
Provisional.
Length = 657
Score = 683 bits (1763), Expect = 0.0
Identities = 339/605 (56%), Positives = 454/605 (75%), Gaps = 14/605 (2%)
Query: 65 HARRIMSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAK 124
++++ +IG+DLGTT SCV+ ++G + +V+ENSEG RTTPSV+A++ E LVG AK
Sbjct: 21 ESQKVQGDVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFK-GSEKLVGLAAK 79
Query: 125 RQAVTNPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWIS-VRGKKLAPPQ 183
RQA+TNP++T YA KRLIGR+F ++ +QKDI +PYKIV+A NGDAW+ GK+ +P Q
Sbjct: 80 RQAITNPQSTFYAVKRLIGRRFEDEHIQKDIKNVPYKIVRAGNGDAWVQDGNGKQYSPSQ 139
Query: 184 ISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTA 243
I A VL KMK+TAE++LG +++ AV+T PAYFNDAQRQATKDAG IAGL V R++NEPTA
Sbjct: 140 IGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTA 199
Query: 244 AALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFD 303
AALA+G+DK+ D I VYDLGGGTFD+S++EIA FEV +TNGDT LGGEDFD
Sbjct: 200 AALAYGMDKT--KDSLIAVYDLGGGTFDISVLEIAG----GVFEVKATNGDTHLGGEDFD 253
Query: 304 QRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAP 363
+ DYIL+EF K +GIDL K+ +ALQR++ +AE+AK ELSS+ +TE+N P+I +
Sbjct: 254 LALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGA 313
Query: 364 VHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKV 423
H+ + I+R+K E + LI R+I PC+ +KDAG+++ +IND++LVGGMTRMPKV E+V
Sbjct: 314 QHIQMHISRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEV 373
Query: 424 KEFFGKDPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIK 483
K+FF KDP R +NPDEAVA+GAA G VL GD K L+LLDVTPLSLGIET+GG+ T+MI
Sbjct: 374 KKFFQKDPFRGVNPDEAVALGAATLGGVLRGDVKGLVLLDVTPLSLGIETLGGVFTRMIP 433
Query: 484 KNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIE 543
KNTTIPTK SQ FSTA DNQ V +KV+QGEREM + N+++G+F+L GIPPA RG+PQIE
Sbjct: 434 KNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIE 493
Query: 544 VTFDIDANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELA 603
VTFDIDANGI HVTAKDK TGK ITI AN GL++E+I++M++ +E +AE D+ REL
Sbjct: 494 VTFDIDANGICHVTAKDKATGKTQNITITANGGLSKEQIEQMIRDSEQHAEADRVKRELV 553
Query: 604 ESRNHGESLIHSTKKSLKIKEAYEVLSDSEK---RIIYDQYGHAGIDPNMSGSSASAEAS 660
E RN+ E+ + + ++ L ++ +SD+EK + + + A +PN++ +A
Sbjct: 554 EVRNNAETQLTTAERQLG---EWKYVSDAEKENVKTLVAELRKAMENPNVAKDDLAAATD 610
Query: 661 NFADA 665
A
Sbjct: 611 KLQKA 615
>gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional.
Length = 673
Score = 678 bits (1752), Expect = 0.0
Identities = 307/557 (55%), Positives = 411/557 (73%), Gaps = 10/557 (1%)
Query: 67 RRIMSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQ 126
R + K++GIDLGTTNS V+ +EG +P ++ N+EG RTTPSV+AY +NG+ LVG AKRQ
Sbjct: 35 RVVAEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQ 94
Query: 127 AVTNPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWI--SVRGKKLAPPQI 184
AV NP+NT ++ KR IGRK +E V ++ + Y++V+ +NG+ + GK+ A +I
Sbjct: 95 AVVNPENTFFSVKRFIGRKMSE--VDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEI 152
Query: 185 SAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAA 244
SA+VLRK+ A +L ++T+AVITVPAYFND+QR ATKDAGRIAGLEV RIINEPTAA
Sbjct: 153 SAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAA 212
Query: 245 ALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQ 304
+LA+G +K KS+ I+V+DLGGGTFDVS++E+ G+ FEVLST+GDT LGG+DFD+
Sbjct: 213 SLAYGFEK--KSNETILVFDLGGGTFDVSVLEV----GDGVFEVLSTSGDTHLGGDDFDK 266
Query: 305 RIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPV 364
RI+D++ F K GIDL KD ALQR+ +AE+AKIELSS QT I+ P+I + P
Sbjct: 267 RIVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPK 326
Query: 365 HLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVK 424
H++ +TRAK E L +L+ R P A++DA + DI+++ILVGG TR+P VQE VK
Sbjct: 327 HIDTTLTRAKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVK 386
Query: 425 EFFGKDPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKK 484
+ GKDP +NPDE VA+GAA+Q VL+G+ D++LLDVTPLSLG+ET+GG+MTK+I +
Sbjct: 387 KLTGKDPNVTVNPDEVVALGAAVQAGVLAGEVSDIVLLDVTPLSLGLETLGGVMTKIIPR 446
Query: 485 NTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEV 544
NTT+PT S+VFSTA D Q +V + V QGERE V NK LG F L+GIPPA RG+PQIEV
Sbjct: 447 NTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEV 506
Query: 545 TFDIDANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAE 604
FDIDANGIL V+A DK TGK+ ITI S L ++E+++MVQ AE A+EDK R+ +
Sbjct: 507 KFDIDANGILSVSATDKGTGKKQDITITGASTLPKDEVERMVQEAEKFAKEDKEKRDAVD 566
Query: 605 SRNHGESLIHSTKKSLK 621
++N +S+++ T+K LK
Sbjct: 567 TKNQADSVVYQTEKQLK 583
>gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9,
Escherichia coli DnaK, and similar proteins. This
subgroup includes human mitochondrial HSPA9 (also known
as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75;
PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9
maps to 5q31.1), Escherichia coli DnaK, and
Saccharomyces cerevisiae Stress-Seventy subfamily
C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa
subunit). It belongs to the heat shock protein 70
(HSP70) family of chaperones that assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Typically, HSP70s
have a nucleotide-binding domain (NBD) and a
substrate-binding domain (SBD). The nucleotide sits in a
deep cleft formed between the two lobes of the NBD. The
two subdomains of each lobe change conformation between
ATP-bound, ADP-bound, and nucleotide-free states. ATP
binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs); for Escherichia coli DnaK, these are the
DnaJ and GrpE, respectively. HSPA9 is involved in
multiple processses including mitochondrial import,
antigen processing, control of cellular proliferation
and differentiation, and regulation of glucose
responses. During glucose deprivation-induced cellular
stress, HSPA9 plays an important role in the suppression
of apoptosis by inhibiting a conformational change in
Bax that allow the release of cytochrome c. DnaK
modulates the heat shock response in Escherichia coli.
It protects E. coli from protein carbonylation, an
irreversible oxidative modification that increases
during organism aging and bacterial growth arrest. Under
severe thermal stress, it functions as part of a
bi-chaperone system: the DnaK system and the
ring-forming AAA+ chaperone ClpB (Hsp104) system, to
promote cell survival. DnaK has also been shown to
cooperate with GroEL and the ribosome-associated
Escherichia coli Trigger Factor in the proper folding of
cytosolic proteins. S. cerevisiae Ssc1p is the major
HSP70 chaperone of the mitochondrial matrix, promoting
translocation of proteins from the cytosol, across the
inner membrane, to the matrix, and their subsequent
folding. Ssc1p interacts with Tim44, a peripheral inner
membrane protein associated with the TIM23 protein
translocase. It is also a subunit of the endoSceI
site-specific endoDNase and is required for full
endoSceI activity. Ssc1p plays roles in the import of
Yfh1p, a nucleus-encoded mitochondrial protein involved
in iron homeostasis (and a homolog of human frataxin,
implicated in the neurodegenerative disease,
Friedreich's ataxia). Ssc1 also participates in
translational regulation of cytochrome c oxidase (COX)
biogenesis by interacting with Mss51 and
Mss51-containing complexes.
Length = 377
Score = 664 bits (1715), Expect = 0.0
Identities = 259/383 (67%), Positives = 309/383 (80%), Gaps = 6/383 (1%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
+IGIDLGTTNSCV+++EG PKVIEN+EGARTTPSV+A+ ++GE LVG PAKRQAVT
Sbjct: 1 KGAVIGIDLGTTNSCVAVMEGKTPKVIENAEGARTTPSVVAFTKDGERLVGMPAKRQAVT 60
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVL 189
NP+NT+YA KRLIGR+F++ EVQKDI +PYKIVKA NGDAW+ GKK +P QI A VL
Sbjct: 61 NPENTLYATKRLIGRRFDDPEVQKDIKNVPYKIVKASNGDAWVEAHGKKYSPSQIGAFVL 120
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
KMK+TAE YLG + AVITVPAYFND+QRQATKDAG+IAGL V R+INEPTAAALA+G
Sbjct: 121 MKMKETAEAYLGKPVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAYG 180
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
LDK D+ I VYDLGGGTFD+SI+EI FEV STNGDTFLGGEDFD ++ +
Sbjct: 181 LDKKD--DKVIAVYDLGGGTFDISILEIQKGV----FEVKSTNGDTFLGGEDFDNALLRH 234
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLK 369
++ EF K GIDL KD++ALQR++ +AE+AKIELSSS QT+IN PYI P HLN+K
Sbjct: 235 LVKEFKKEQGIDLTKDNMALQRLREAAEKAKIELSSSLQTDINLPYITADASGPKHLNMK 294
Query: 370 ITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK 429
+TRAK E LV +LI RTIEPC+ A+KDAG+ SDI ++ILVGGMTRMPKVQE VKE FGK
Sbjct: 295 LTRAKFESLVGDLIKRTIEPCKKALKDAGVSKSDIGEVILVGGMTRMPKVQETVKEIFGK 354
Query: 430 DPRRDINPDEAVAVGAAIQGSVL 452
+P + +NPDEAVA+GAAIQG VL
Sbjct: 355 EPSKGVNPDEAVAIGAAIQGGVL 377
>gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human
HSPA9 and similar proteins. This subfamily includes
human mitochondrial HSPA9 (also known as 70-kDa heat
shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75;
HSPA9B; MTHSP75; the gene encoding HSPA9 maps to
5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae
Stress-seventy subfamily Q protein 1/Ssq1p (also called
Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae
Stress-Seventy subfamily C/Ssc1p (also called mtHSP70,
Endonuclease SceI 75 kDa subunit). It belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly, and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs); for Escherichia coli DnaK, these are the
DnaJ and GrpE, respectively.
Length = 376
Score = 635 bits (1640), Expect = 0.0
Identities = 242/385 (62%), Positives = 304/385 (78%), Gaps = 11/385 (2%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
M KIIGIDLGTTNSCV+++EG +P VI N+EG+RTTPSV+A+ + GE LVG PAKRQAVT
Sbjct: 1 MGKIIGIDLGTTNSCVAVMEGGEPTVIPNAEGSRTTPSVVAFTKKGERLVGQPAKRQAVT 60
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAW--ISVRGKKLAPPQISAE 187
NP+NTI++ KR +GRKF+E E ++ +PYK+V + G+ I GK P +ISA
Sbjct: 61 NPENTIFSIKRFMGRKFDEVEEERK---VPYKVVVDEGGNYKVEIDSNGKDYTPQEISAM 117
Query: 188 VLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALA 247
+L+K+K+ AE YLG ++TEAVITVPAYFND+QRQATKDAG+IAGLEV RIINEPTAAALA
Sbjct: 118 ILQKLKEDAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALA 177
Query: 248 FGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRII 307
+GLDK K + I+VYDLGGGTFDVSI+EI G+ FEVL+TNGDT LGG+DFDQRII
Sbjct: 178 YGLDK--KGNEKILVYDLGGGTFDVSILEI----GDGVFEVLATNGDTHLGGDDFDQRII 231
Query: 308 DYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLN 367
D++++EF K GIDLRKD +ALQR+K +AE+AKIELSS +TEIN P+I P HL
Sbjct: 232 DWLVEEFKKEEGIDLRKDKMALQRLKEAAEKAKIELSSVTETEINLPFITADATGPKHLE 291
Query: 368 LKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFF 427
+ +TRAK E L ++L+ RTIEP + A+KDA + SDI+++ILVGG TR+P VQE VKE F
Sbjct: 292 MTLTRAKFEELTEDLVERTIEPVKQALKDAKLSPSDIDEVILVGGSTRIPAVQELVKELF 351
Query: 428 GKDPRRDINPDEAVAVGAAIQGSVL 452
GK+P + +NPDE VA+GAAIQG VL
Sbjct: 352 GKEPNKGVNPDEVVAIGAAIQGGVL 376
>gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional.
Length = 616
Score = 625 bits (1615), Expect = 0.0
Identities = 251/576 (43%), Positives = 374/576 (64%), Gaps = 32/576 (5%)
Query: 65 HARRIMSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAK 124
H RR+ +GIDLGTTNS V+ + Q +V+ + +G PSV+ Y E+G I VG A+
Sbjct: 16 HQRRL---AVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDG-IEVGYEAR 71
Query: 125 RQAVTNPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQI 184
A +PKNTI + KR +GR ++Q+ +PY+ V ++NG I +P ++
Sbjct: 72 ANAAQDPKNTISSVKRFMGRSL--ADIQQRYPHLPYQFVASENGMPLIRTAQGLKSPVEV 129
Query: 185 SAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAA 244
SAE+L+ +++ AE+ LGGE+ AVITVPAYF+DAQRQATKDA R+AGL V R++NEPTAA
Sbjct: 130 SAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAA 189
Query: 245 ALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIAD-VDGEKQFEVLSTNGDTFLGGEDFD 303
A+A+GLD + I VYDLGGGTFD+SI+ ++ V FEVL+T GD+ LGG+DFD
Sbjct: 190 AIAYGLDS--GQEGVIAVYDLGGGTFDISILRLSKGV-----FEVLATGGDSALGGDDFD 242
Query: 304 QRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAP 363
+ D+IL++ G+ R D + + +A AK LS + E++ +A+ G
Sbjct: 243 HLLADWILEQ----AGLSPRLDPEDQRLLLDAARAAKEALSDADSVEVS---VALWQG-- 293
Query: 364 VHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKV 423
+ITR + L+ L+ RT+ CR A++DAG++ ++ ++++VGG TR+P V+E V
Sbjct: 294 -----EITREQFNALIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAV 348
Query: 424 KEFFGKDPRRDINPDEAVAVGAAIQGSVLSGDR--KDLLLLDVTPLSLGIETMGGIMTKM 481
EFFG+ P I+PD+ VA+GAAIQ +L+G++ D+LLLDV PLSLG+ETMGG++ K+
Sbjct: 349 GEFFGRTPLTSIDPDKVVAIGAAIQADILAGNKPDSDMLLLDVIPLSLGLETMGGLVEKI 408
Query: 482 IKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQ 541
I +NTTIP +Q F+T +D Q A+ + V QGERE+V+ + L F L GIPP G +
Sbjct: 409 IPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAAR 468
Query: 542 IEVTFDIDANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRE 601
I VTF +DA+G+L VTA +K TG E I +K + GLT++EI +M++ + ++AEED + R
Sbjct: 469 IRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDDEIARMLKDSMSHAEEDMQARA 528
Query: 602 LAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRII 637
LAE + E ++ + + +L ++LS +E+ I
Sbjct: 529 LAEQKVEAERVLEALQAAL--AADGDLLSAAERAAI 562
>gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional.
Length = 653
Score = 624 bits (1610), Expect = 0.0
Identities = 293/572 (51%), Positives = 405/572 (70%), Gaps = 20/572 (3%)
Query: 74 IGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKN 133
IGIDLGTT SCV + + ++I N +G RTTPS +A+ + E L+G AK Q NP+N
Sbjct: 7 IGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVARNPEN 65
Query: 134 TIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISV--RG--KKLAPPQISAEVL 189
T++ AKRLIGRKF++ VQ D+ P+K+ + I V +G K P +IS+ VL
Sbjct: 66 TVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVL 125
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
+KMK+ AE YLG ++ +AV+TVPAYFND+QRQATKDAG IAGL V RIINEPTAAA+A+G
Sbjct: 126 QKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG 185
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
LDK G ++N++++DLGGGTFDVS++ I D FEV +T GDT LGGEDFD R++++
Sbjct: 186 LDKKGDGEKNVLIFDLGGGTFDVSLLTIED----GIFEVKATAGDTHLGGEDFDNRLVEF 241
Query: 310 ILDEFNKIN-GIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNL 368
+ +F + N G DL + AL+R++ ERAK LSSS Q I ++ G + N+
Sbjct: 242 CVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIE--IDSLFEG--IDYNV 297
Query: 369 KITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFF- 427
I+RA+ E L + T++P +KDAG+ +++++LVGG TR+PKVQ +K+FF
Sbjct: 298 TISRARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFN 357
Query: 428 GKDPRRDINPDEAVAVGAAIQGSVLSGDR----KDLLLLDVTPLSLGIETMGGIMTKMIK 483
GK+P + INPDEAVA GAA+Q ++L+G++ +DLLLLDVTPLSLG+ET GG+MTK+I+
Sbjct: 358 GKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGGVMTKLIE 417
Query: 484 KNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIE 543
+NTTIPTK SQ+F+T DNQP V ++V++GER M N +LG+F+L+GIPPA RG+PQIE
Sbjct: 418 RNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIE 477
Query: 544 VTFDIDANGILHVTAKDKKTGKENKITIKANSG-LTEEEIKKMVQSAEANAEEDKRLREL 602
VTFDIDANGIL+V+A+DK TGK NKITI + G L++ +I +MV AE ED+ RE
Sbjct: 478 VTFDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDEANRER 537
Query: 603 AESRNHGESLIHSTKKSLKIKEAYEVLSDSEK 634
E++N E+ +S K +L+ ++ LSDS+K
Sbjct: 538 VEAKNGLENYCYSMKNTLQDEKVKGKLSDSDK 569
>gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA. The Heat
Shock Cognate proteins HscA and HscB act together as
chaperones. HscA resembles DnaK but belongs in a
separate clade. The apparent function is to aid assembly
of iron-sulfur cluster proteins. Homologs from Buchnera
and Wolbachia are clearly in the same clade but are
highly derived and score lower than some examples of
DnaK [Protein fate, Protein folding and stabilization].
Length = 599
Score = 593 bits (1532), Expect = 0.0
Identities = 250/567 (44%), Positives = 366/567 (64%), Gaps = 23/567 (4%)
Query: 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPK 132
+GIDLGTTNS V+ + P+V+ ++EG PSV+ Y ++G + VG A A +PK
Sbjct: 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPK 60
Query: 133 NTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKM 192
NTI + KRL+GR E K S++PY+ V + + P ++SAE+L+K+
Sbjct: 61 NTISSVKRLMGRS---IEDIKTFSILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKL 117
Query: 193 KKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFGLDK 252
K+ AE+ LGG++ AVITVPAYF+DAQRQATKDA R+AGL V R++NEPTAAA+A+GLDK
Sbjct: 118 KQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLDK 177
Query: 253 SGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILD 312
+ S+ VYDLGGGTFDVSI+++ G FEVL+T GD+ LGG+DFD + +IL
Sbjct: 178 A--SEGIYAVYDLGGGTFDVSILKL--TKG--VFEVLATGGDSALGGDDFDHALAKWILK 231
Query: 313 EFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITR 372
+ GI + + + +A AK L+ ++ E++ +G K+TR
Sbjct: 232 Q----LGISADLNPEDQRLLLQAARAAKEALTDAESVEVD----FTLDGKDFKG--KLTR 281
Query: 373 AKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPR 432
+ E L+ L+ +T+ CR A++DAG+ V +I ++LVGG TRMP V+ V E FG++P
Sbjct: 282 DEFEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPL 341
Query: 433 RDINPDEAVAVGAAIQGSVLSGDR--KDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIPT 490
DI+PD+ VA+GAAIQ +L+G+R DLLLLDVTPLSLGIETMGG++ K+I +NT IP
Sbjct: 342 TDIDPDQVVALGAAIQADLLAGNRIGNDLLLLDVTPLSLGIETMGGLVEKIIPRNTPIPV 401
Query: 491 KFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDIDA 550
+Q F+T +D Q A+ + V QGERE+V + L F L GIPP + G +I VTF +DA
Sbjct: 402 ARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDA 461
Query: 551 NGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGE 610
+G+L V+A+++ TG E I +K + GL++EEI++M++ + +AEED R LAE + E
Sbjct: 462 DGLLTVSAQEQSTGVEQSIQVKPSYGLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAE 521
Query: 611 SLIHSTKKSLKIKEAYEVLSDSEKRII 637
++ + + +L ++LS+ E+ I
Sbjct: 522 RILEALQAAL--AADGDLLSEDERAAI 546
>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional.
Length = 371
Score = 537 bits (1385), Expect = 0.0
Identities = 184/324 (56%), Positives = 230/324 (70%), Gaps = 3/324 (0%)
Query: 622 IKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASAEASNFADAFGDIFGDIFGSNRDRD 681
IKEAYEVLSD +KR YDQYGHA + G F D FGDIFGDIFG R
Sbjct: 50 IKEAYEVLSDPQKRAAYDQYGHAAFEQGGGGGGFGG-GGGFGDIFGDIFGDIFGGGRGG- 107
Query: 682 NNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSG 741
+ G DLRYN+EITLE+A G IR+P+ C +C+G+GAK GTSP +C TC G
Sbjct: 108 GRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHG 167
Query: 742 QGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRI 801
GQVRMQQGFF++QQTCP C G GK+I PC C+G GR+++ KTL VKIPAG++ RI
Sbjct: 168 AGQVRMQQGFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRI 227
Query: 802 RSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLN 861
R +G GE G GG G+LY++IH+K H +FERDG+DL+ E+PISF+TAALGGEIE PTL+
Sbjct: 228 RLSGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLD 287
Query: 862 GKAFFVIPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLET 921
G+ IPEGTQ+GK+FRLRGKG+K++RS GDL+C V +ETPV LT+ QK+LL E
Sbjct: 288 GRVKLKIPEGTQTGKLFRLRGKGVKSVRSGARGDLYCQVVVETPVNLTKRQKELLEEFEE 347
Query: 922 SILEGGFKHNPRTKTVLNKVKNFF 945
S G KH+P++K +KVK+FF
Sbjct: 348 SFESGE-KHSPKSKGFFDKVKDFF 370
>gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces
cerevisiae Ssq1 and similar proteins. Ssq1p (also
called Stress-seventy subfamily Q protein 1, Ssc2p,
Ssh1p, mtHSP70 homolog) belongs to the heat shock
protein 70 (HSP70) family of chaperones that assist in
protein folding and assembly, and can direct incompetent
"client" proteins towards degradation. Typically, HSP70s
have a nucleotide-binding domain (NBD) and a
substrate-binding domain (SBD). The nucleotide sits in a
deep cleft formed between the two lobes of the NBD. The
two subdomains of each lobe change conformation between
ATP-bound, ADP-bound, and nucleotide-free states. ATP
binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial
chaperone that is involved in iron-sulfur (Fe/S) center
biogenesis. Ssq1p plays a role in the maturation of
Yfh1p, a nucleus-encoded mitochondrial protein involved
in iron homeostasis (and a homolog of human frataxin,
implicated in the neurodegenerative disease,
Friedreich's ataxia).
Length = 373
Score = 509 bits (1312), Expect = e-174
Identities = 224/382 (58%), Positives = 287/382 (75%), Gaps = 10/382 (2%)
Query: 71 SKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTN 130
S IIGIDLGTTNSCV++I+ + P +IEN+EG RTTPS++++ ILVG AKRQ +
Sbjct: 2 STIIGIDLGTTNSCVAVIDKTTPVIIENAEGKRTTPSIVSF-TKTGILVGEAAKRQEALH 60
Query: 131 PKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLR 190
P+NT +A KRLIGR+F + EVQ+ + + YKIV+ NGDAWI GKK +P QI++ VL+
Sbjct: 61 PENTFFATKRLIGRQFKDVEVQRKMKVPYYKIVEGRNGDAWIYTNGKKYSPSQIASFVLK 120
Query: 191 KMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFGL 250
K+KKTAE YLG + EAVITVPAYFND+QRQATKDAG +AGL+V RIINEPTAAALA+G+
Sbjct: 121 KLKKTAEAYLGKRVDEAVITVPAYFNDSQRQATKDAGTLAGLKVLRIINEPTAAALAYGI 180
Query: 251 DKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYI 310
DK K ++NI VYDLGGGTFD+SI+ I D FEV +TNGDT LGGEDFD I+ YI
Sbjct: 181 DKR-KENKNIAVYDLGGGTFDISILNIED----GVFEVKATNGDTMLGGEDFDNAIVQYI 235
Query: 311 LDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKI 370
+ EF + IDL ++ A+QRIK +AE+AKIELSSS+++ I PY+ P HL + I
Sbjct: 236 IKEFKRKYKIDLTRNKKAIQRIKEAAEKAKIELSSSEESVIELPYLD----GPKHLRITI 291
Query: 371 TRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKD 430
TR + E L + RTI PC+ +KDAG++ DI+++ILVGGMTRMP +Q V+E FGK
Sbjct: 292 TRREFEQLRKSICKRTIYPCKQCLKDAGLRKKDIDEVILVGGMTRMPYIQNVVQEIFGKK 351
Query: 431 PRRDINPDEAVAVGAAIQGSVL 452
P + +NPDEAVA+GAAIQGS+L
Sbjct: 352 PSKSVNPDEAVALGAAIQGSIL 373
>gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family.
HSP70 (70-kDa heat shock protein) family chaperones
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some HSP70 family members are not
chaperones but instead, function as NEFs to remove ADP
from their HSP70 chaperone partners during the ATP
hydrolysis cycle, some may function as both chaperones
and NEFs.
Length = 369
Score = 494 bits (1273), Expect = e-168
Identities = 194/377 (51%), Positives = 264/377 (70%), Gaps = 10/377 (2%)
Query: 74 IGIDLGTTNSCVSII-EGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPK 132
IGIDLGTTNS V+ + G +P++I N EG+RTTPSV+ + +GE+LVG AKRQA+ NP+
Sbjct: 1 IGIDLGTTNSAVAYVDNGGKPEIIPNGEGSRTTPSVVYFDGDGEVLVGEAAKRQALDNPE 60
Query: 133 NTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKM 192
NT+ KRLIGRKF++ VQ + A + + GKK +P ++SA +L+K+
Sbjct: 61 NTVGDFKRLIGRKFDDPLVQSAKKV-IGVDRGAPIIPVPVELGGKKYSPEEVSALILKKL 119
Query: 193 KKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFGLDK 252
K+ AE YLG +TEAVITVPAYFNDAQR+ATK+A IAGL V R+INEPTAAALA+GLDK
Sbjct: 120 KEDAEAYLGEPVTEAVITVPAYFNDAQREATKEAAEIAGLNVVRLINEPTAAALAYGLDK 179
Query: 253 SGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILD 312
+ R I+V+DLGGGTFDVS++E+ FEVL+T GD LGG+DFD + DY+ +
Sbjct: 180 KDEKGRTILVFDLGGGTFDVSLVEV----EGGVFEVLATGGDNHLGGDDFDNALADYLAE 235
Query: 313 EFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITR 372
+F + GIDLR D AL+R+K +AE+AKI LSSS++ I P + G+ L +++TR
Sbjct: 236 KFKEKGGIDLRLDPRALRRLKEAAEKAKIALSSSEEATITLPGL----GSGGDLEVELTR 291
Query: 373 AKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPR 432
+ E L+ L+ RTI+ + DAG+K DI+ ++LVGG +R+P V+E ++E FGK P
Sbjct: 292 EEFEELIRPLLERTIDLVERVLADAGLKPEDIDAVLLVGGSSRIPLVRELLEELFGKKPL 351
Query: 433 RDINPDEAVAVGAAIQG 449
R I+PDEAVA+GAAI
Sbjct: 352 RSIDPDEAVALGAAIYA 368
>gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5
and similar proteins. This subfamily includes human
HSPA5 (also known as 70-kDa heat shock protein 5,
glucose-regulated protein 78/GRP78, and immunoglobulin
heavy chain-binding protein/BIP, MIF2; the gene encoding
HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p
(also known as Grp78p), and related proteins. This
subfamily belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly and can direct incompetent "client" proteins
towards degradation. HSPA5 and Kar2p are chaperones of
the endoplasmic reticulum (ER). Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs).
Multiple ER DNAJ domain proteins have been identified
and may exist in distinct complexes with HSPA5 in
various locations in the ER, for example DNAJC3-p58IPK
in the lumen. HSPA5-NEFs include SIL1 and an atypical
HSP70 family protein HYOU1/ORP150. The ATPase activity
of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p.
Length = 374
Score = 470 bits (1212), Expect = e-159
Identities = 209/384 (54%), Positives = 278/384 (72%), Gaps = 18/384 (4%)
Query: 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPK 132
+IGIDLGTT SCV + + + ++I N +G R TPS +A+ + GE L+G AK QA +NP+
Sbjct: 3 VIGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTD-GERLIGDAAKNQATSNPE 61
Query: 133 NTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDA-WISVRGKK--LAPPQISAEVL 189
NTI+ KRLIGRKF++KEVQKDI L+PYK+V D + V+G+K +P +ISA VL
Sbjct: 62 NTIFDVKRLIGRKFDDKEVQKDIKLLPYKVVNKDGKPYIEVDVKGEKKTFSPEEISAMVL 121
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
KMK+ AE YLG ++ AV+TVPAYFNDAQRQATKDAG IAGL V RIINEPTAAA+A+G
Sbjct: 122 TKMKEIAEAYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAYG 181
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
LDK G ++NI+V+DLGGGTFDVS++ I + FEVL+TNGDT LGGEDFDQR++++
Sbjct: 182 LDKKGG-EKNILVFDLGGGTFDVSLLTIDN----GVFEVLATNGDTHLGGEDFDQRVMEH 236
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQT--EINEPYIAMSNGAPVHLN 367
+ F K +G D+ KD ALQ+++ E+AK LSS QT EI ++ +G +
Sbjct: 237 FIKLFKKKHGKDISKDKRALQKLRREVEKAKRALSSQHQTRIEIE----SLFDG--EDFS 290
Query: 368 LKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFF 427
+TRAK E L +L +T++P + ++DA +K SDI++I+LVGG TR+PKVQ+ +KEFF
Sbjct: 291 ETLTRAKFEELNMDLFKKTLKPVKKVLEDADLKKSDIDEIVLVGGSTRIPKVQQLLKEFF 350
Query: 428 -GKDPRRDINPDEAVAVGAAIQGS 450
GK+P R INPDEAVA GAA+Q
Sbjct: 351 NGKEPSRGINPDEAVAYGAAVQAG 374
>gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of
HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar
proteins. This subfamily includes human HSPA1A (70-kDa
heat shock protein 1A, also known as HSP72; HSPA1;
HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat
shock protein 1B, also known as HSPA1A; HSP70-2;
HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like,
also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The
genes for these three HSPA1 proteins map in close
proximity on the major histocompatibility complex (MHC)
class III region on chromosome 6, 6p21.3. This subfamily
also includes human HSPA8 (heat shock 70kDa protein 8,
also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73;
NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human
HSPA2 (70-kDa heat shock protein 2, also known as
HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human
HSPA6 (also known as heat shock 70kDa protein 6
(HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3),
human HSPA7 (heat shock 70kDa protein 7 , also known as
HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces
cerevisiae Stress-Seventy subfamily B/Ssb1p. This
subfamily belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs).
Associations of polymorphisms within the MHC-III HSP70
gene locus with longevity, systemic lupus erythematosus,
Meniere's disease, noise-induced hearing loss,
high-altitude pulmonary edema, and coronary heart
disease, have been found. HSPA2 is involved in cancer
cell survival, is required for maturation of male
gametophytes, and is linked to male infertility. The
induction of HSPA6 is a biomarker of cellular stress.
HSPA8 participates in the folding and trafficking of
client proteins to different subcellular compartments,
and in the signal transduction and apoptosis process; it
has been shown to protect cardiomyocytes against
oxidative stress partly through an interaction with
alpha-enolase. S. cerevisiae Ssb1p, is part of the
ribosome-associated complex (RAC), it acts as a
chaperone for nascent polypeptides, and is important for
translation fidelity; Ssb1p is also a [PSI+]
prion-curing factor.
Length = 376
Score = 445 bits (1147), Expect = e-149
Identities = 196/387 (50%), Positives = 264/387 (68%), Gaps = 19/387 (4%)
Query: 74 IGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKN 133
IGIDLGTT SCV + + + ++I N +G RTTPS +A+ + E L+G AK Q NP N
Sbjct: 2 IGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPTN 60
Query: 134 TIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISV--RG--KKLAPPQISAEVL 189
T++ AKRLIGRKF++ VQ D+ P+K+V G I V +G K P +IS+ VL
Sbjct: 61 TVFDAKRLIGRKFSDPVVQSDMKHWPFKVV-NGGGKPPIIVEYKGETKTFYPEEISSMVL 119
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
KMK+ AE YLG +T AVITVPAYFND+QRQATKDAG IAGL V RIINEPTAAA+A+G
Sbjct: 120 TKMKEIAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG 179
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
LDK G +RN++++DLGGGTFDVS++ I D FEV +T GDT LGGEDFD R++++
Sbjct: 180 LDKKGGGERNVLIFDLGGGTFDVSLLTIED----GIFEVKATAGDTHLGGEDFDNRLVNH 235
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQT--EINEPYIAMSNGAPVHLN 367
+ EF + + D+ + AL+R++ + ERAK LSSS Q EI+ ++ G +
Sbjct: 236 FVQEFKRKHKKDISGNKRALRRLRTACERAKRTLSSSTQASIEID----SLFEG--IDFY 289
Query: 368 LKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFF 427
ITRA+ E L +L T+EP ++DA + S I+DI+LVGG TR+PKVQ+ +++FF
Sbjct: 290 TSITRARFEELCADLFRGTLEPVEKVLRDAKLDKSQIHDIVLVGGSTRIPKVQKLLQDFF 349
Query: 428 -GKDPRRDINPDEAVAVGAAIQGSVLS 453
GK+ + INPDEAVA GAA+Q ++LS
Sbjct: 350 NGKELNKSINPDEAVAYGAAVQAAILS 376
>gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and
similar proteins. Escherichia coli HscA (heat shock
cognate protein A, also called Hsc66), belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). HscA's partner J-domain protein is HscB;
it does not appear to require a NEF, and has been shown
to be induced by cold-shock. The HscA-HscB
chaperone/co-chaperone pair is involved in [Fe-S]
cluster assembly.
Length = 355
Score = 405 bits (1044), Expect = e-134
Identities = 166/378 (43%), Positives = 235/378 (62%), Gaps = 24/378 (6%)
Query: 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPK 132
IGIDLGTTNS V+ + + K++ + G PSV+ Y + G I VG A + A+++PK
Sbjct: 2 AIGIDLGTTNSLVASVLSGKVKILPDENGRVLLPSVVHYGDGG-ISVGHDALKLAISDPK 60
Query: 133 NTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKM 192
NTI + KRL+G+ + ++K +P + + G + + P ++SAE+L+ +
Sbjct: 61 NTISSVKRLMGKSIED--IKKSFPYLPI-LEGKNGGIILFHTQQGTVTPVEVSAEILKAL 117
Query: 193 KKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFGLDK 252
K+ AE LGGEI AVITVPAYF+DAQRQATKDA R+AGL V R++NEPTAAALA+GLDK
Sbjct: 118 KERAEKSLGGEIKGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAALAYGLDK 177
Query: 253 SGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILD 312
K + VYDLGGGTFDVSI+++ FEVL+T GD+ LGG+DFDQ + + +L
Sbjct: 178 --KKEGIYAVYDLGGGTFDVSILKLHK----GVFEVLATGGDSALGGDDFDQLLAELLLK 231
Query: 313 EFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITR 372
++ + + A +AK LS +++ E+ G ITR
Sbjct: 232 KYG----LKSLISDEDQAELLLIARKAKEALSGAEEVEV--------RGQD--FKCTITR 277
Query: 373 AKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPR 432
+ E L+D L+ +T+ C+ A++DAG+ V DI +ILVGG TR+P VQE V +FFG+ P
Sbjct: 278 EEFEKLIDPLVKKTLNICKQALRDAGLSVKDIKGVILVGGSTRIPLVQEAVSKFFGQKPL 337
Query: 433 RDINPDEAVAVGAAIQGS 450
DINPDE VA+GAA+Q +
Sbjct: 338 CDINPDEVVAIGAALQAN 355
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn
finger domain [Posttranslational modification, protein
turnover, chaperones].
Length = 371
Score = 400 bits (1030), Expect = e-132
Identities = 169/328 (51%), Positives = 212/328 (64%), Gaps = 10/328 (3%)
Query: 621 KIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASAEASNFADAFGDIFGDIFGSNRDR 680
+I EAYEVLSD EKR YDQ+GHAG G F FGDIF D FG
Sbjct: 49 EINEAYEVLSDPEKRAAYDQFGHAGFKAGGFGGF---GFGGFGGDFGDIFEDFFGGGGGG 105
Query: 681 DNNNKGSN-GKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTC 739
G DLRYNLEITLE+A +G IRV C +C+G+GAK GT P +C TC
Sbjct: 106 RRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTC 165
Query: 740 SGQGQVRMQQ--GFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIEN 797
+G GQVR Q GFFS QQTCP C G GK+I PC C G GR+K+ K++ V IPAG+++
Sbjct: 166 NGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDD 225
Query: 798 NMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEA 857
RIR +G GE G NGG G+LY+ +H+KPH +FERDGDDL+ E+PISF+ AALGGEIE
Sbjct: 226 GDRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEV 285
Query: 858 PTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLR 917
PTL+G+ IP GTQ+G++FRLRGKG+ +RS GDL+ V +ETP L++ QK+LL
Sbjct: 286 PTLDGRVKLKIPAGTQTGEVFRLRGKGMPKLRSGGRGDLYVRVKVETPKNLSDEQKELLE 345
Query: 918 SLETSILEGGFKHNPRTKTVLNKVKNFF 945
S+ EG + +P +K+KNFF
Sbjct: 346 EFAKSLGEGP-EQSP---GFFDKLKNFF 369
>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ. This model
represents bacterial forms of DnaJ, part of the
DnaK-DnaJ-GrpE chaperone system. The three components
typically are encoded by consecutive genes. DnaJ
homologs occur in many genomes, typically not near DnaK
and GrpE-like genes; most such genes are not included by
this family. Eukaryotic (mitochondrial and chloroplast)
forms are not included in the scope of this family.
Length = 354
Score = 396 bits (1020), Expect = e-130
Identities = 169/364 (46%), Positives = 216/364 (59%), Gaps = 42/364 (11%)
Query: 578 TEEEIKKMVQ----------SAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYE 627
+EEEIKK + + + AEE + +E I EAYE
Sbjct: 13 SEEEIKKAYRKLAKKYHPDRNKDKEAEE--KFKE--------------------INEAYE 50
Query: 628 VLSDSEKRIIYDQYGHAGIDPNMSGSSA---SAEASNFADAFGDIFGDIFGSNR--DRDN 682
VLSD EKR YDQ+GHAG + G + F D FGDIFGD FG R
Sbjct: 51 VLSDPEKRAQYDQFGHAGFNGGGGGGGGGFNGFDIGFFGD-FGDIFGDFFGGGGGSGRRR 109
Query: 683 NNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQ 742
+ G+DLRY+LE+T E+A +G I +P + C++C+G GAK GT P +C TC G
Sbjct: 110 RSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGT 169
Query: 743 GQVRMQQ----GFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENN 798
GQVR QQ GFF QQTCP C G GK+I PC C G GR+K KT+ VKIPAG++
Sbjct: 170 GQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVDTG 229
Query: 799 MRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAP 858
R+R +G G G NGG NG+LY+ I +KPHK+FERDG+DL+ E+PISF+ A LGGEIE P
Sbjct: 230 QRLRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVP 289
Query: 859 TLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRS 918
TL+G IP GTQSG +FRL+GKG+ +R + GDL V +ETP L++ QK+LL
Sbjct: 290 TLDGDVKLKIPAGTQSGTVFRLKGKGVPRLRGNGRGDLLVTVKVETPKNLSKEQKELLEE 349
Query: 919 LETS 922
L +
Sbjct: 350 LAEA 353
>gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia
coli HscC and similar proteins. This subfamily
includes Escherichia coli HscC (also called heat shock
cognate protein C, Hsc62, or YbeW) and the the putative
DnaK-like protein Escherichia coli ECs0689. It belongs
to the heat shock protein 70 (Hsp70) family of
chaperones that assist in protein folding and assembly
and can direct incompetent "client" proteins towards
degradation. Typically, Hsp70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is
regulated by various co-chaperones: J-domain proteins
and nucleotide exchange factors (NEFs). Two genes in the
vicinity of the HscC gene code for potential
cochaperones: J-domain containing proteins, DjlB/YbeS
and DjlC/YbeV. HscC and its co-chaperone partners may
play a role in the SOS DNA damage response. HscC does
not appear to require a NEF.
Length = 339
Score = 373 bits (960), Expect = e-122
Identities = 159/383 (41%), Positives = 227/383 (59%), Gaps = 52/383 (13%)
Query: 74 IGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKN 133
IGIDLGTTNS V++ + + ++I N+ G TPSV++ E+GEILVG A+ + +T+P
Sbjct: 1 IGIDLGTTNSLVAVWQDGKARLIPNALGEYLTPSVVSVDEDGEILVGKAARERLITHPDL 60
Query: 134 TIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMK 193
T + KR +G K L ++ ++S+ VLR +K
Sbjct: 61 TAASFKRFMGTD-------KKYRL-----------------GKREFRAEELSSLVLRSLK 96
Query: 194 KTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFGLDKS 253
+ AE YLG +TEAVI+VPAYFND QR+ATK AG +AGL+V+R+INEPTAAALA+GL
Sbjct: 97 EDAEAYLGEPVTEAVISVPAYFNDEQRKATKRAGELAGLKVERLINEPTAAALAYGLHDK 156
Query: 254 GKSDRNIVVYDLGGGTFDVSIIEIAD-VDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILD 312
+ +V+DLGGGTFDVS++E+ D V EV ++ GD +LGGEDF + + + L
Sbjct: 157 -DEETKFLVFDLGGGTFDVSVLELFDGV-----MEVRASAGDNYLGGEDFTRALAEAFLK 210
Query: 313 EFNKINGIDLRKDSIA-LQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVH-----L 366
+ +G+D K + L R+ +AERAK LS ++ E++ V L
Sbjct: 211 K----HGLDFEKLDPSELARLLRAAERAKRALSDQEEAEMS-----------VRIEGEEL 255
Query: 367 NLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEF 426
+TR + E + L+ R +P A++DA +K SDI++IILVGG TRMP V++ V
Sbjct: 256 EYTLTREEFEEICQPLLERLRQPIERALRDARLKPSDIDEIILVGGATRMPVVRKLVSRL 315
Query: 427 FGKDPRRDINPDEAVAVGAAIQG 449
FG+ P +NPDE VA+GAAIQ
Sbjct: 316 FGRFPLVHLNPDEVVALGAAIQA 338
>gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional.
Length = 595
Score = 363 bits (932), Expect = e-114
Identities = 209/564 (37%), Positives = 310/564 (54%), Gaps = 45/564 (7%)
Query: 74 IGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKN 133
+GID GTTNS ++I + KVI++ + P+ I + N +G
Sbjct: 22 VGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNN-FTIGN----------NK 70
Query: 134 TIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMK 193
+ + KRL G+ E + + + ++ + ++ K+L P+I+AE+ +K
Sbjct: 71 GLRSIKRLFGKTLKEILNTPALFSLVKDYLDVNSSELKLNFANKQLRIPEIAAEIFIYLK 130
Query: 194 KTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFGLDKS 253
AE+ L IT+AVITVPA+FNDA R A +IAG EV R+I EPTAAA A+GL+K+
Sbjct: 131 NQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNKN 190
Query: 254 GKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDE 313
K +VYDLGGGTFDVSI+ I E F+V++TNGD LGG D D I Y+ ++
Sbjct: 191 QKG--CYLVYDLGGGTFDVSILNIQ----EGIFQVIATNGDNMLGGNDIDVVITQYLCNK 244
Query: 314 FNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRA 373
F DL LQ A++AK L+ + N+ I +
Sbjct: 245 F------DLPNSIDTLQL----AKKAKETLTYKDSFNND--------------NISINKQ 280
Query: 374 KLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRR 433
LE L+ L+ RTI + ++ AG +I+ +ILVGG TR+P +++++ + F D
Sbjct: 281 TLEQLILPLVERTINIAQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKVDILS 338
Query: 434 DINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIPTKFS 493
DI+PD+AV GAA+Q L + LL+DV PLSLG+E GGI+ K+I +NT IP
Sbjct: 339 DIDPDKAVVWGAALQAENLIAPHTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPISVV 398
Query: 494 QVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDIDANGI 553
+ F+T DNQ + + QGEREM + + L F L+G+PP G + EVTF IDA+GI
Sbjct: 399 KEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADGI 458
Query: 554 LHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLI 613
L V+A +K + + I +K N G+ + EI M+++A NA+ D R L E+ E+LI
Sbjct: 459 LSVSAYEKISNTSHAIEVKPNHGIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEALI 518
Query: 614 HSTKKSLKIKEAYEVLSDSEKRII 637
+ +++ I E +LS+SE II
Sbjct: 519 FNIERA--IAELTTLLSESEISII 540
>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional.
Length = 376
Score = 335 bits (861), Expect = e-107
Identities = 144/330 (43%), Positives = 199/330 (60%), Gaps = 11/330 (3%)
Query: 622 IKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASAEASNFADAFG--DIFGDIFGSNRD 679
I EAYEVLSD +KR YDQ+GHA PN +F FG DIF FG
Sbjct: 49 ISEAYEVLSDDQKRAQYDQFGHA--GPNQGFGGGGFGGGDFGGGFGFEDIFSSFFGGGGR 106
Query: 680 RDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTC 739
R + N G DL+Y + +T E+A +G I +P + C +C+G+GAK GTS +C C
Sbjct: 107 RRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHC 166
Query: 740 SGQGQVRMQQ----GFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGI 795
G GQV ++Q G +QTCP C G G+ I C C+G G++++ K + VKIPAG+
Sbjct: 167 GGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGV 226
Query: 796 ENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEI 855
+N +IR +G GEPG+NGG G+LY+ ++PH+ FERDGDD++ EMP++F+ AALG EI
Sbjct: 227 DNGQQIRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEI 286
Query: 856 EAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKL 915
E PTL+GK IP GTQ+G FRL+GKG+ N+R GD + V + TP +LT+ QK+L
Sbjct: 287 EVPTLHGKVKLKIPAGTQTGTQFRLKGKGVPNVRGYGQGDQYVVVRVVTPTKLTDRQKEL 346
Query: 916 LRSLETSILEGGFKHNPRTKTVLNKVKNFF 945
LR G + + + + +K K F
Sbjct: 347 LREFAEL---SGEEIDEQPSSFFDKAKRAF 373
>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional.
Length = 386
Score = 330 bits (848), Expect = e-105
Identities = 158/340 (46%), Positives = 206/340 (60%), Gaps = 19/340 (5%)
Query: 621 KIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSS-----------ASAEASNFADAFGDI 669
+I EAYE+LSD +KR YDQ+GHA DP G + F D F DI
Sbjct: 50 EINEAYEILSDPQKRAQYDQFGHAAFDPGGFGQGGFGQGGFGGGGFDFDFGGFGDIFEDI 109
Query: 670 FGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKK 729
FGD FG+ R R G D+RY+LE+T E+AA+G I V ++ C C G+GAK
Sbjct: 110 FGDFFGTGRRRAETGP-QKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGAKP 168
Query: 730 GTSPISCFTCSGQGQVRMQQ----GFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNK 785
G+ P++C C G GQVR +Q G +TC +C G GK+I PC C G GRI+R +
Sbjct: 169 GSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRR 228
Query: 786 TLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPIS 845
++V IPAGI++ I G GEPG+ GG NG+LYI I +KPH +F+R+G +++ EMPI+
Sbjct: 229 KIKVNIPAGIDDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPIT 288
Query: 846 FSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETP 905
F+ AALGGEIE PTL+GK F IPEGTQ+G FRLRGKGI ++R GD V IE P
Sbjct: 289 FTDAALGGEIEIPTLDGKVKFTIPEGTQTGTKFRLRGKGIPHLRGRGRGDQIVKVYIEVP 348
Query: 906 VQLTEYQKKLLRSLETSILEGGFKHNPRTKTVLNKVKNFF 945
+LTE QK+LLR E L G R K+ ++K+ F
Sbjct: 349 KKLTEKQKELLREFEK--LSGEEGTESR-KSFFQRMKDAF 385
>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional.
Length = 366
Score = 329 bits (844), Expect = e-104
Identities = 157/363 (43%), Positives = 223/363 (61%), Gaps = 21/363 (5%)
Query: 590 EANAEE-DKRLRELA----ESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHA 644
+A+ EE K R+LA RN G+ + + + EAYEVLSD +KR IYDQYGH
Sbjct: 15 DASEEEIKKSYRKLAMKYHPDRNPGDK--EAEELFKEAAEAYEVLSDPKKRGIYDQYGHE 72
Query: 645 GIDPNMSGSSASAEASNFADAFGDIFGDIF--GSNRDRDNNNKGSNGKDLRYNLEITLEQ 702
G+ + +G S + + +FGDIF D F G R + G DLRY+L + +
Sbjct: 73 GL--SGTGFSGFSGFDDIFSSFGDIFEDFFGFGGGRRGRSRTAVRAGADLRYDLTLPFLE 130
Query: 703 AAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQ 762
AA+G IR+ + C+ C+G+G + GTSP +C C G GQV QGFFSI+ TCP+C+
Sbjct: 131 AAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCR 190
Query: 763 GAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIE 822
G GKVI PC C+G GR++ +KT++VKIPAG++ R+R G GE G+ GG G+LY+
Sbjct: 191 GMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLRGEGEAGVRGGPPGDLYVF 250
Query: 823 IHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRG 882
+ ++PH+ FERDG+D+H ++PISF AALG +IE PTL G+ IP+GTQ G IFR +G
Sbjct: 251 LTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGERELKIPKGTQPGDIFRFKG 310
Query: 883 KGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRTKTVLNKVK 942
KGI ++R GD V ++ P +LT+ Q++LL E + LE + + NK++
Sbjct: 311 KGIPSLRGGGRGDQIIEVEVKVPTRLTKKQEELL--TEFARLES--------EKIGNKLR 360
Query: 943 NFF 945
N F
Sbjct: 361 NLF 363
>gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa
heat shock proteins including HSPA4 and similar
proteins. This subgroup includes the human proteins,
HSPA4 (also known as 70-kDa heat shock protein 4, APG-2,
HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps
to 5q31.1), HSPA4L (also known as 70-kDa heat shock
protein 4-like, APG-1, HSPH3, and OSP94; the human
HSPA4L gene maps to 4q28), and HSPH1 (also known as heat
shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B;
NY-CO-25; the human HSPH1 gene maps to 13q12.3),
Saccharomyces cerevisiae Sse1p and Sse2p, and a sea
urchin sperm receptor. It belongs to the 105/110 kDa
heat shock protein (HSP105/110) subfamily of the
HSP70-like family, and includes proteins believed to
function generally as co-chaperones of HSP70 chaperones,
acting as nucleotide exchange factors (NEFs), to remove
ADP from their HSP70 chaperone partners during the ATP
hydrolysis cycle. HSP70 chaperones assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 381
Score = 320 bits (822), Expect = e-101
Identities = 148/388 (38%), Positives = 232/388 (59%), Gaps = 17/388 (4%)
Query: 74 IGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKN 133
+GID G NS V++ V+ N R TPS++++ E + L+G AK QA++N KN
Sbjct: 3 VGIDFGNLNSVVAVARKGGIDVVANEYSNRETPSLVSFGEK-QRLIGEAAKNQAISNFKN 61
Query: 134 TIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVR--GKK--LAPPQISAEVL 189
T+ KRLIGRKF++ EVQK++ +P+K+V+ +G I V G++ +P Q+ A +L
Sbjct: 62 TVRNFKRLIGRKFDDPEVQKELKFLPFKVVELPDGKVGIKVNYLGEEKVFSPEQVLAMLL 121
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
K+K+ AE L G++T+ VI+VP+YF DAQR+A DA +IAGL R++NE TA ALA+G
Sbjct: 122 TKLKEIAEKALKGKVTDCVISVPSYFTDAQRRALLDAAQIAGLNCLRLMNETTATALAYG 181
Query: 250 LDKSGKSD----RNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQR 305
+ K+ + RN+ D+G + VSI+ + + +VLST D LGG DFD+
Sbjct: 182 IYKTDLPEEEKPRNVAFVDIGHSSTQVSIVAFN----KGKLKVLSTAFDRNLGGRDFDEA 237
Query: 306 IIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVH 365
+ ++ EF + ID+ + A R+ A+ E+ K LS++ + +N + M +
Sbjct: 238 LFEHFAKEFKEKYKIDVLSNPKARLRLLAACEKLKKVLSANTEAPLNIECL-MED---KD 293
Query: 366 LNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKE 425
++ KI R + E L L+ R EP A+ +AG+ DI+ + +VGG TR+P V+E + +
Sbjct: 294 VSGKIKREEFEELCAPLLERVEEPLEKALAEAGLTKEDIHSVEIVGGSTRIPAVKELIAK 353
Query: 426 FFGKDPRRDINPDEAVAVGAAIQGSVLS 453
FGK+ +N DEAVA G A+Q ++LS
Sbjct: 354 VFGKELSTTLNADEAVARGCALQCAMLS 381
>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional.
Length = 373
Score = 318 bits (818), Expect = e-100
Identities = 148/323 (45%), Positives = 197/323 (60%), Gaps = 12/323 (3%)
Query: 624 EAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASAEASNFADAFGDIFGDIFG-SNRDRDN 682
EAYEVL D+EKR YD++GHAG++ N S+ F+ F DIFGD+FG S
Sbjct: 52 EAYEVLRDAEKRARYDRFGHAGVNGNGGFGGFSSAEDIFS-HFSDIFGDLFGFSGGGSRR 110
Query: 683 NNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQ 742
+ G DLRYNL ++ QAA G ++R+P C C G+GA GTSP +C C G
Sbjct: 111 GPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGS 170
Query: 743 GQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIR 802
GQVR QGFF I CP C+G G+VI HPC C G G +++ + L+V+IPAG++ R+R
Sbjct: 171 GQVRQSQGFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLR 230
Query: 803 STGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNG 862
G GEPG++GG G+LY+ I ++ K+F+R G DL ISF AALG IE PTL+
Sbjct: 231 LRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDD 290
Query: 863 KAFFVIPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETS 922
IP+GTQSG++FRLRGKG+ + SS GDL V++ TP +LT+ Q++LLR E +
Sbjct: 291 PVTLDIPKGTQSGEVFRLRGKGLPYLGSSQKGDLLVEVSVVTPTKLTKRQEELLREFE-A 349
Query: 923 ILEGGFKHNPRTKTVLNKVKNFF 945
+ E L KVK FF
Sbjct: 350 LEEE---------KPLEKVKKFF 363
>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional.
Length = 380
Score = 304 bits (780), Expect = 7e-95
Identities = 137/337 (40%), Positives = 183/337 (54%), Gaps = 11/337 (3%)
Query: 617 KKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASA----EASNFADAFGDIFGD 672
+K +++EAYE LSD +KR YDQYG AG + G + + F F DIF
Sbjct: 44 EKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGGAGGFGGFDGSGGFGG-FEDIFSS 102
Query: 673 IFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTS 732
FG R N N G DL+Y + + E+A +G + C +C G+GAK GTS
Sbjct: 103 FFGGGGARRNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTS 162
Query: 733 PISCFTCSGQGQVRMQQ----GFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLE 788
P++C C G G + + G Q TC C G GK I PC C+G G K+ T+
Sbjct: 163 PVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVS 222
Query: 789 VKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFST 848
VKIPAG+E +IR G GE G NGG G+LY+ ++P K FERDG ++Y +PISF
Sbjct: 223 VKIPAGVETGQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQ 282
Query: 849 AALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQL 908
AALG +E PT++G IP GTQ+GK FRLRGKG +R GD V I TP +L
Sbjct: 283 AALGDTVEVPTVHGDVELKIPAGTQTGKKFRLRGKGAPKLRGGGNGDQHVTVNIVTPTKL 342
Query: 909 TEYQKKLLRSLETSILEGGFKHNPRTKTVLNKVKNFF 945
+ QK+ L++ + G NP+ K +KVK+ F
Sbjct: 343 NDAQKEALKAFAKA--SGEKDVNPKKKGFFDKVKDAF 377
>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional.
Length = 377
Score = 299 bits (767), Expect = 4e-93
Identities = 144/330 (43%), Positives = 194/330 (58%), Gaps = 8/330 (2%)
Query: 621 KIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASAEASNFADAFGDIFGDIFGSNRDR 680
+I EAY VLSD+EKR YD++GHAGID S A +F FGDIF FG R
Sbjct: 49 EISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAEDIFRGA-DFGG-FGDIFEMFFGGGGRR 106
Query: 681 DNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCS 740
G DLRY+L ITLE+AA+G I VP + C +C G GAK GTSP C TC
Sbjct: 107 GRMGP-RRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCG 165
Query: 741 GQGQVRMQQ----GFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIE 796
G GQV + G F TC C G G+VI PC C+G G++++ + + V +PAG +
Sbjct: 166 GTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGAD 225
Query: 797 NNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIE 856
+ +R++ +G GE G G +G+LYI +H+K H FER GDD+ E+PISF+ AALG +I
Sbjct: 226 SGLRLKLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIM 285
Query: 857 APTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLL 916
PTL GK IP GTQ+ +FRL+ KG+ + GD V ++TP +LT+ QK+LL
Sbjct: 286 VPTLYGKVKMNIPPGTQTHSVFRLKDKGMPRLHGHGKGDQLVKVIVKTPTKLTQEQKELL 345
Query: 917 RSLE-TSILEGGFKHNPRTKTVLNKVKNFF 945
R + S + K + K + +KVK+ F
Sbjct: 346 REFDELSNGKNPSKAGKKKKGIFDKVKDAF 375
>gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13
and similar proteins. Human HSPA13 (also called 70-kDa
heat shock protein 13, STCH, "stress 70 protein
chaperone, microsome-associated, 60kD", "stress 70
protein chaperone, microsome-associated, 60kDa"; the
gene encoding HSPA13 maps to 21q11.1) belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). STCH contains an NBD but lacks an SBD.
STCH may function to regulate cell proliferation and
survival, and modulate the TRAIL-mediated cell death
pathway. The HSPA13 gene is a candidate stomach cancer
susceptibility gene; a mutation in the NBD coding region
of HSPA13 has been identified in stomach cancer cells.
The NBD of HSPA13 interacts with the ubiquitin-like
proteins Chap1 and Chap2, implicating HSPA13 in
regulating cell cycle and cell death events. HSPA13 is
induced by the Ca2+ ionophore A23187.
Length = 417
Score = 299 bits (766), Expect = 2e-92
Identities = 145/392 (36%), Positives = 231/392 (58%), Gaps = 18/392 (4%)
Query: 72 KIIGIDLGTTNSCVSIIEG--SQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
KIIGIDLGTT S V + + + +I + G ++ PSV+A+ +LVG A QA
Sbjct: 21 KIIGIDLGTTYSSVGVYQAGTGETDIIPDENGRKSIPSVVAFTPGT-VLVGYKAVEQAEH 79
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYK-IVKADNGDAWISVRG---KKLAPPQIS 185
NP+NTIY AKR IG+ F ++E++ + +K + + NG + SV K + P +I
Sbjct: 80 NPQNTIYDAKRFIGKIFTKEELEFESDRYRFKVKINSRNGAFFFSVLTNETKTVTPEEIG 139
Query: 186 AEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAA 245
+ ++ K++K AE YLG + +AVI+VPA F++ QR AT A +AGLEV R+INEPTAAA
Sbjct: 140 SRLILKLRKMAEKYLGTPVGKAVISVPAEFDEKQRNATVKAANLAGLEVLRVINEPTAAA 199
Query: 246 LAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQR 305
LA+GL K + N++V DLGGGT DVS++ F + G+ LGG+DF+QR
Sbjct: 200 LAYGLHKK-QDVFNVLVVDLGGGTLDVSLLNKQG----GMFLTRAMAGNNRLGGQDFNQR 254
Query: 306 IIDYILDEFNKING--IDLRKDSIALQRIKASAERAKIELSSSKQTEINEP-YIAMSNGA 362
++ Y+ + + G D ++D +QR++ + E AKI L+ T I+ + +
Sbjct: 255 LLQYLYQKIYEKYGKVPDNKED---IQRLRQAVEAAKINLTLHPSTTISLNLTLLSEGES 311
Query: 363 PVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEK 422
V ++TR + E L ++L + + P + + + ++++I+LVGG TR+P++++
Sbjct: 312 IVKFEYELTRDEFETLNEDLFQKILLPIEAVLAEGHLDKEEVDEIVLVGGSTRIPRIRQV 371
Query: 423 VKEFFGKDPRRDINPDEAVAVGAAIQGSVLSG 454
+ FFGKDP ++P+ AV G AIQ ++ G
Sbjct: 372 IGRFFGKDPNTSVDPELAVVTGVAIQAGIIGG 403
>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional.
Length = 372
Score = 292 bits (748), Expect = 2e-90
Identities = 143/340 (42%), Positives = 204/340 (60%), Gaps = 5/340 (1%)
Query: 586 VQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLK-IKEAYEVLSDSEKRIIYDQYGHA 644
V + A+ K +LA+ + + +K K I AY+VL D +KR YD++GH
Sbjct: 11 VSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHD 70
Query: 645 GIDPNMS---GSSASAEASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLE 701
S G + + D FGD F D G +R + G DL+YNL I LE
Sbjct: 71 AFQNQQSRGGGGNHGGFHPDINDIFGDFFSDFMGGSRRSRPTSSKVRGSDLKYNLTINLE 130
Query: 702 QAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKC 761
+A +G +I S C +C+G+G++KG + +C CSG G RMQQGFF+I+Q C KC
Sbjct: 131 EAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQGFFTIEQACHKC 190
Query: 762 QGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYI 821
QG G++I +PC C+G+GR + + L V IPAG+EN RIR TG GE G+ GG++G+LY+
Sbjct: 191 QGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHTGEGEAGIRGGNSGDLYV 250
Query: 822 EIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLN-GKAFFVIPEGTQSGKIFRL 880
+I IKPH +++ DG +LH ++PISF AALGGEIE P + GK IP GTQ+G RL
Sbjct: 251 DIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAGTQNGDQLRL 310
Query: 881 RGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLE 920
R KG+ +RS+I GD+ H+ +E P L++ Q++LL +
Sbjct: 311 RSKGMSKMRSTIRGDMLTHIHVEVPKNLSKRQRELLEEFK 350
>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional.
Length = 378
Score = 276 bits (708), Expect = 1e-84
Identities = 135/313 (43%), Positives = 183/313 (58%), Gaps = 14/313 (4%)
Query: 615 STKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASA--EASNFAD---AFGDI 669
+ +K +I EAY VLSD EKR YDQ+GHAG+D G S NF D FG
Sbjct: 43 AEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMD----GFSQEDIFNNINFEDIFQGFGFG 98
Query: 670 FGDIFGSNRDRDNNNKGSN-GKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAK 728
G+IF + G G D+ +EITLE+AA G I+V C C G+ A+
Sbjct: 99 IGNIFDMFGFGGGSRHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAE 158
Query: 729 KGTSPISCFTCSGQGQVRMQQ----GFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRN 784
G+ +C TC G GQV+ + G TCP CQG GK++ PC +C+G G ++
Sbjct: 159 PGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRET 218
Query: 785 KTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPI 844
KT+ VKIPAG+E R+R +G GE G GG G+LY+ I +KPHK+F R+G +L+YE PI
Sbjct: 219 KTISVKIPAGVETGSRLRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPI 278
Query: 845 SFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIET 904
SF AALG ++ PT++G IP GTQSG FRL+G G+ ++R S G+L+ V +
Sbjct: 279 SFVQAALGDTVDVPTIDGPVELKIPAGTQSGTTFRLKGHGMPSLRWSGKGNLYVKVKVVV 338
Query: 905 PVQLTEYQKKLLR 917
P +L+ QK+LLR
Sbjct: 339 PKKLSPKQKELLR 351
>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional.
Length = 372
Score = 274 bits (702), Expect = 6e-84
Identities = 152/345 (44%), Positives = 206/345 (59%), Gaps = 22/345 (6%)
Query: 588 SAEANAEEDKR-LRELA----ESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYG 642
S AN EE K R+LA +N G S +K + EAYE+L D +KR YDQ+G
Sbjct: 13 SKSANDEEIKSAYRKLAIKYHPDKNKGNK--ESEEKFKEATEAYEILRDPKKRQAYDQFG 70
Query: 643 HAGIDPNMSGSSASAEASNFADAFGD---IFGDIFGSNRD-------RDNNNKGSNGKDL 692
AG++ G A ++F+D FGD IFGD FG R R +GS DL
Sbjct: 71 KAGVNAGAGGFGQGA-YTDFSDIFGDFGDIFGDFFGGGRGGGSGGGRRSGPQRGS---DL 126
Query: 693 RYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFF 752
RYNLE++LE AA G I +P + C C G+GA KG+SP +C C G GQ+R QGFF
Sbjct: 127 RYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGFF 186
Query: 753 SIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLN 812
S+ TCP C+G G VI +PC C G G ++ +T+ +KIP G+E R++ +G GE G N
Sbjct: 187 SVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPGVETGSRLKVSGEGEAGPN 246
Query: 813 GGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGK-AFFVIPEG 871
GG +G+LY+ HIK H++FER G+DL IS + A LG EIE PT++GK A IPEG
Sbjct: 247 GGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEG 306
Query: 872 TQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLL 916
T+SG++FRL+G G+ + + GD V IE P ++T Q++L+
Sbjct: 307 TESGQVFRLKGHGMPYLGAYGKGDQHVIVKIEIPKKITRRQRELI 351
>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional.
Length = 380
Score = 272 bits (696), Expect = 7e-83
Identities = 134/348 (38%), Positives = 200/348 (57%), Gaps = 22/348 (6%)
Query: 586 VQSAEANAEEDKRLRELA----ESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQY 641
++ ++ E K R+LA +N G + +K +I EAY+VLSD +K+ YDQ+
Sbjct: 12 LEKGASDDEIKKAFRKLAIKYHPDKNKGNK--EAEEKFKEINEAYQVLSDPQKKAQYDQF 69
Query: 642 GHAGIDPNMSGSSAS--------AEASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLR 693
G A D N +G S ++ F D F FG FGS+ R N + G D+
Sbjct: 70 GTA--DFNGAGGFGSGGFGGFDFSDMGGFGDIFDSFFGGGFGSSSRRRNGPQ--RGADIE 125
Query: 694 YNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQ---- 749
Y + +T E+A +G I V + C++C G GAK GTSP +C C G GQ+R+Q+
Sbjct: 126 YTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPL 185
Query: 750 GFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEP 809
G F TC KC G+GKVI PC C+G G++++N+ ++V +PAG++ I G GE
Sbjct: 186 GSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAGVDTGNVIPLRGQGEH 245
Query: 810 GLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIP 869
G NGG G+LYI I + PHK F+R G D++ + ISF+ AALG EI+ PT++G+ + +P
Sbjct: 246 GKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGEVKYEVP 305
Query: 870 EGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLR 917
GTQ G +FRL+GKG+ + S+ G+ + V ++ P +L QK+ L
Sbjct: 306 AGTQPGTVFRLKGKGVPRVNSTGRGNQYVTVIVDIPKKLNSKQKEALT 353
>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional.
Length = 371
Score = 271 bits (695), Expect = 7e-83
Identities = 138/329 (41%), Positives = 197/329 (59%), Gaps = 12/329 (3%)
Query: 621 KIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASAEASNFADAFGDIFGDIFGSNRDR 680
++KEAY+ LSD +K+ YDQ+GH DPN A +F F DIF FG R
Sbjct: 48 EVKEAYDTLSDPQKKAHYDQFGHT--DPNQGFGGGGA--GDF-GGFSDIFDMFFGGGGGR 102
Query: 681 DNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCS 740
N N G DL+Y + + ++A +G T I +P + C +C+G+GAK GT P +C C
Sbjct: 103 RNPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCG 162
Query: 741 GQGQVRMQQ----GFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIE 796
G GQ+ ++Q G ++ C C+G GK+I C C G G++++ K + VK+PAGI+
Sbjct: 163 GSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGID 222
Query: 797 NNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIE 856
+ ++R +G GE G+NGG G+LY+ ++KPH+ FERDGDD++ EMP++F ALG EIE
Sbjct: 223 HGQQLRVSGQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIE 282
Query: 857 APTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLL 916
PTLNGK IP GTQ+G FRLRGKG+ N+ GD V + TP LTE +K+L+
Sbjct: 283 VPTLNGKVKLKIPAGTQTGTSFRLRGKGVPNVHGRGQGDQHVQVRVVTPKNLTEKEKELM 342
Query: 917 RSLETSILEGGFKHNPRTKTVLNKVKNFF 945
R E + + GG + + + KVK F
Sbjct: 343 R--EFAGMSGG-RPDEQNDGFFAKVKRAF 368
>gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1
and similar proteins. This subgroup includes human
HYOU1 (also known as human hypoxia up-regulated 1,
GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human
HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces
cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian
HYOU1 functions as a nucleotide exchange factor (NEF)
for HSPA5 (alos known as BiP, Grp78 or HspA5) and may
also function as a HSPA5-independent chaperone. S.
cerevisiae Lhs1p, does not have a detectable endogenous
ATPase activity like canonical HSP70s, but functions as
a NEF for Kar2p; it's interaction with Kar2p is
stimulated by nucleotide-binding. In addition, Lhs1p has
a nucleotide-independent holdase activity that prevents
heat-induced aggregation of proteins in vitro. This
subgroup belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as NEFs, to
remove ADP from their HSP70 chaperone partners during
the ATP hydrolysis cycle. HSP70 chaperones assist in
protein folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 388
Score = 270 bits (693), Expect = 3e-82
Identities = 127/393 (32%), Positives = 215/393 (54%), Gaps = 23/393 (5%)
Query: 74 IGIDLGTTNSCVSIIE-GSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPK 132
+GIDLG+ V++++ G +++ N E R TPS +A++ GE L G+ A A P+
Sbjct: 1 LGIDLGSEWIKVALVKPGVPFEIVLNEESKRKTPSAVAFK-GGERLFGSDASSLAARFPQ 59
Query: 133 NTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVR---GKKLAPPQISAEVL 189
K L+G+ ++ V S P + D ++ + G++ + ++ A +L
Sbjct: 60 QVYLHLKDLLGKPADDPSVSLYQSRHPLPYLVVDESRGTVAFKISDGEEYSVEELVAMIL 119
Query: 190 RKMKKTAEDYLGGE-ITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAF 248
KK AE++ + + VITVP YF AQRQA DA +AGL V ++N+ TAAAL +
Sbjct: 120 NYAKKLAEEHAKEAPVKDVVITVPPYFTQAQRQALLDAAELAGLNVLALVNDGTAAALNY 179
Query: 249 GLDKSGKSDR--NIVVYDLGGGTFDVSIIEIADV------DGEKQFEVLSTNGDTFLGGE 300
LD+ ++++ ++ YD+G G+ +++E + V Q EVL D LGG
Sbjct: 180 ALDRRFENNKPQYVLFYDMGAGSTTATVVEFSPVEEKEKSKTVPQIEVLGVGWDRTLGGR 239
Query: 301 DFDQRIIDYILDEFNKING--IDLRKDSIALQRIKASAERAKIELSSSKQTEIN-EPYIA 357
+FD R+ D++ EF + + +D+R + A+ ++ A RAK LS++ + ++ E +
Sbjct: 240 EFDLRLADHLAKEFEEKHKAKVDVRTNPRAMAKLLKEANRAKEVLSANSEAPVSIE---S 296
Query: 358 MSNGAPVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMP 417
+ + + KITRA+ E L +L R + P + A++ AG+ + DI+ + L+GG TR+P
Sbjct: 297 LYDD--IDFKTKITRAEFEELCADLFERAVAPIKKALESAGLTLKDIDSVELIGGATRVP 354
Query: 418 KVQEKVKEFFGKDP-RRDINPDEAVAVGAAIQG 449
KVQE++ E GK + +N DEA A+GAA
Sbjct: 355 KVQEELSEAVGKKKLGKHLNADEAAAMGAAYYA 387
>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional.
Length = 391
Score = 267 bits (684), Expect = 6e-81
Identities = 144/382 (37%), Positives = 208/382 (54%), Gaps = 29/382 (7%)
Query: 588 SAEANAEEDKR-LRELA----ESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYG 642
S A+ EE K+ R+LA +N G++ + K+ ++ EAYEVLSD++KR YD+YG
Sbjct: 10 SKTASPEEIKKAYRKLAVKYHPDKNPGDA--EAEKRFKEVSEAYEVLSDAQKRESYDRYG 67
Query: 643 HAGIDPNMSGSSASAEAS------NFADAFGDIFG-------DIFGSNRD----RDNNNK 685
G G + + F AFG FG +FG + R
Sbjct: 68 KDGPFAGAGGFGGAGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGMRGGPAG 127
Query: 686 GSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQV 745
G + ++ ++ E+AA G + V + C +C G+GA C C G GQV
Sbjct: 128 ARQGASKKVHITLSFEEAAKGVEKELLVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQV 187
Query: 746 RMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTG 805
+GFFS+ TCP+C G G+VI PC C G GRIK +++ V IPAG+++ MR++ G
Sbjct: 188 VQSRGFFSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRSVHVHIPAGVDSGMRLKMEG 247
Query: 806 NGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTL--NGK 863
G+ G NG G+LY+ I ++PH VFER GDDL E+PI F AALG + E PTL G
Sbjct: 248 YGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGT 307
Query: 864 AFFVIPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETSI 923
IPEG QSG I ++RG+G N+ GDL +++ETP L+E QK+LLR + +
Sbjct: 308 CRLTIPEGIQSGTILKVRGQGFPNVHGKGRGDLLVRISVETPQNLSEEQKELLR--QFAA 365
Query: 924 LEGGFKHNPRTKTVLNKVKNFF 945
E ++ P+ ++ L+K+K FF
Sbjct: 366 TEKA-ENFPKKRSFLDKIKGFF 386
>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional.
Length = 378
Score = 261 bits (670), Expect = 4e-79
Identities = 130/354 (36%), Positives = 181/354 (51%), Gaps = 30/354 (8%)
Query: 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKR 635
++ EIK+ + K REL N E + +K +I AYEVLSD EKR
Sbjct: 14 NASDAEIKRAYR---------KLARELHPDVNPDEE---AQEKFKEISVAYEVLSDPEKR 61
Query: 636 IIYDQYGHAGIDPNMSGSSASAEASNFADAFGDIFGDIF-----GSNRDRDNNNKGSNGK 690
I D G DP SA F FG GD+F G R + G
Sbjct: 62 RIVDLGG----DPL---ESAGGGGGGFGGGFGG-LGDVFEAFFGGGAASRGPRGRVRPGS 113
Query: 691 DLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVR-MQQ 749
D + + LE+ A G + V + +C C+G G + P++C TC G+G+V+ +Q+
Sbjct: 114 DSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQR 173
Query: 750 GFFSIQQT---CPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGN 806
F T CP C+G G+VIP PC +C G GR++ + + VKIPAG+ + MRIR
Sbjct: 174 SFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKIPAGVGDGMRIRLAAQ 233
Query: 807 GEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTL-NGKAF 865
GE G GG G+LY+E+H +PH VF RDGDDLH + + AALG + + +G +
Sbjct: 234 GEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSE 293
Query: 866 FVIPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSL 919
IP GTQ G + LRG+G+ ++RS GDL HV + P +L +LLR L
Sbjct: 294 ITIPPGTQPGSVITLRGRGMPHLRSGGRGDLHAHVEVVVPTRLDHEDIELLREL 347
>gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14
and similar proteins. Human HSPA14 (also known as
70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene
encoding HSPA14 maps to 10p13), is ribosome-associated
and belongs to the heat shock protein 70 (HSP70) family
of chaperones that assist in protein folding and
assembly, and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). HSPA14
interacts with the J-protein MPP11 to form the mammalian
ribosome-associated complex (mRAC). HSPA14 participates
in a pathway along with Nijmegen breakage syndrome 1
(NBS1, also known as p85 or nibrin), heat shock
transcription factor 4b (HSF4b), and HSPA4 (belonging to
a different subfamily), that induces tumor migration,
invasion, and transformation. HSPA14 is a potent T
helper cell (Th1) polarizing adjuvant that contributes
to antitumor immune responses.
Length = 375
Score = 255 bits (652), Expect = 1e-76
Identities = 123/384 (32%), Positives = 216/384 (56%), Gaps = 18/384 (4%)
Query: 74 IGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKN 133
IG+ G T++C+++ + + V+ N G R TP+V+A+ + I VG AK+ + N N
Sbjct: 3 IGVHFGNTSACLAVYKDGRADVVANDAGDRVTPAVVAFTDTEVI-VGLAAKQGRIRNAAN 61
Query: 134 TIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRG---KKLAPPQISAEVLR 190
TI K+++GR +++ QK+ + KI++ D + K ++P +++ + +
Sbjct: 62 TIVKNKQILGRSYSDPFKQKEKTESSCKIIEKDGEPKYEIFTEEKTKHVSPKEVAKLIFK 121
Query: 191 KMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFGL 250
KMK+ A+ LG + + VITVP YF++ Q+ A ++A AG V RII+EP+AAALA+G+
Sbjct: 122 KMKEIAQSALGSDSKDVVITVPVYFSEKQKLALREAAEEAGFNVLRIIHEPSAAALAYGI 181
Query: 251 DKSGKSD-RNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
+ + ++VY LGG + DV+I+ + G + VL+T+ D LGGE F + + Y
Sbjct: 182 GQDSPTGKSYVLVYRLGGTSTDVTILRV--NSG--MYRVLATSTDDNLGGESFTETLSQY 237
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSS--SKQTEINEPYIAMSNGAPVHLN 367
+ +EF + D+R ++ A+ ++ +AE AK LS+ S + Y +
Sbjct: 238 LANEFKRKWKQDVRGNARAMMKLNNAAEVAKQILSTLPSANCFVESLYEGID------FQ 291
Query: 368 LKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFF 427
++RA+ E L L + +EP ++ A + +DIN ++L GG +R+PK+Q+ +K+ F
Sbjct: 292 CSVSRARFESLCSSLFPKCLEPIEKVLEQANLTKTDINKVVLCGGSSRIPKLQQLIKDLF 351
Query: 428 -GKDPRRDINPDEAVAVGAAIQGS 450
+ I+PDE +A+GAA Q
Sbjct: 352 PSVEVLNSISPDEVIAIGAAKQAG 375
>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional.
Length = 392
Score = 251 bits (643), Expect = 4e-75
Identities = 131/383 (34%), Positives = 184/383 (48%), Gaps = 38/383 (9%)
Query: 575 SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEK 634
S + EEIKK + K REL N G+ K + EA++VLSD K
Sbjct: 19 SDASAEEIKKAYR---------KLARELHPDANPGDPAAEERFK--AVSEAHDVLSDPAK 67
Query: 635 RIIYDQ---------YGHAGIDPNMS----GSSASAEASNFADAF-----------GDIF 670
R YD+ +G D G+ N D F GD+F
Sbjct: 68 RKEYDETRRLFAGGGFGGRRFDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLF 127
Query: 671 GDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKG 730
G +F ++ G DL + +AA G +R+ S C +C+G+GA+ G
Sbjct: 128 GGLFNRGGGSARPSRPRRGNDLETETTLDFVEAAKGVTMPLRLTSPAPCTTCHGSGARPG 187
Query: 731 TSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVK 790
TSP C TC+G G + QG F + C C+G G +I PC +C G G R +T+ V+
Sbjct: 188 TSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIEDPCEECKGTGVTTRTRTINVR 247
Query: 791 IPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAA 850
IP G+E+ RIR G GE GL G +G+LY+ +H++P KVF RDGDDL +P+SF+ A
Sbjct: 248 IPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELA 307
Query: 851 LGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTE 910
LG + PTL+G +P GT G+I R+RG+G+ RS GDL V + P L
Sbjct: 308 LGSTLSVPTLDGPVGVKVPAGTADGRILRVRGRGVPK-RSGGAGDLLVTVKVAVPPNLDG 366
Query: 911 YQKKLLRSLETSILEGGFKHNPR 933
+ L + + GF +PR
Sbjct: 367 AAAEALEAYAEAERASGF--DPR 387
>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional.
Length = 382
Score = 245 bits (626), Expect = 8e-73
Identities = 117/300 (39%), Positives = 167/300 (55%), Gaps = 16/300 (5%)
Query: 621 KIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASAEASNFAD--------------AF 666
+I EAY+VLSD EKR +YDQ+GHA + S+F F
Sbjct: 47 EINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQGQEGFSDFGGGNIEDILEDVFDIFGF 106
Query: 667 GDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNG 726
GDIFG + R + G+D+ +EI+LE+A G S+ VP + C++C G G
Sbjct: 107 GDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEACGGTG 166
Query: 727 AKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKT 786
G+ C TC G G++ + GFF I QTCP C G G V+ PC CNG G + + +T
Sbjct: 167 YDPGSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEG-VLREPCSKCNGRGLVIKKET 225
Query: 787 LEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISF 846
++V+IP G++N ++R G G G GG G+LYI + +KPH +FER GD+L+ ++ I+
Sbjct: 226 IKVRIPPGVDNGSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITV 285
Query: 847 STAALGGEIEAPTLNGKAFFV-IPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETP 905
+ A LG E+E P L+GK V IP GT+ G R+ GKG+ ++ S GDL V I+ P
Sbjct: 286 AEAVLGTELEVPLLDGKKEKVKIPPGTKEGDKIRVPGKGMPRLKGSGYGDLVVRVHIDVP 345
>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional.
Length = 374
Score = 244 bits (624), Expect = 1e-72
Identities = 114/311 (36%), Positives = 162/311 (52%), Gaps = 20/311 (6%)
Query: 622 IKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASAEASNFADA--FGDIFGDIF----- 674
I AYEVLSD E R YDQ+G AG+ S +A + D F DIF F
Sbjct: 48 INRAYEVLSDPETRARYDQFGEAGV-------SGAAGFPDMGDMGGFADIFETFFSGFGG 100
Query: 675 -GSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSP 733
G R G DLRY+L++ +A +G IR+P + C++C G+GAK GT P
Sbjct: 101 AGGQGGRRRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGP 160
Query: 734 ISCFTCSGQGQVRMQQ----GFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEV 789
+C TC G GQVR G F+ CP C G G+VI PC C G G + K L++
Sbjct: 161 TTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKI 220
Query: 790 KIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTA 849
IPAG++ R+R +G G+ GL GG G+LY+ + +K F RDG ++ E+ IS+ A
Sbjct: 221 NIPAGVDTGTRLRVSGEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQA 280
Query: 850 ALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNI-RSSIPGDLFCHVTIETPVQL 908
LG +E T++G IP GTQ + L KG+ + GD V ++ P ++
Sbjct: 281 ILGDTLEVDTVDGPVELTIPAGTQPNTVLTLENKGVPRLGNPVARGDHLITVKVKIPTRI 340
Query: 909 TEYQKKLLRSL 919
++ +++LL L
Sbjct: 341 SDEERELLEKL 351
>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional.
Length = 389
Score = 234 bits (598), Expect = 8e-69
Identities = 132/377 (35%), Positives = 190/377 (50%), Gaps = 40/377 (10%)
Query: 578 TEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRII 637
TE EIKK + K RE N G++ + ++ +I EAY+VLSD +KR
Sbjct: 22 TEAEIKKAYR---------KLAREYHPDANKGDA--KAEERFKEISEAYDVLSDEKKRKE 70
Query: 638 YDQ----YGHAGIDPNMSGSSASAEASNFADAFG----------------DIFGDIFGSN 677
YD+ +G+ G P G + D FG D+FG +F
Sbjct: 71 YDEARSLFGNGGFRPGPGGGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLFNRG 130
Query: 678 RDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCF 737
R +G+ D+ + ++ +A G +R+ S C +C G GAK GT+P C
Sbjct: 131 GRRTQPRRGA---DVESEVTLSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVCP 187
Query: 738 TCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIEN 797
TCSG GQV G FS+ + CP C+G G + PCL C G GR K ++T++V+IPAG+ +
Sbjct: 188 TCSGTGQVSRNSGGFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQVRIPAGVSD 247
Query: 798 NMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEA 857
RIR G G PG GG G+LY+ +H+ PH VF R GD+L +P++F AALG E+
Sbjct: 248 GQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRV 307
Query: 858 PTLNGKAFFV-IPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLL 916
PTL G V +P GT +G++ R+RGKG + GDL V + P L+ ++ L
Sbjct: 308 PTLGGPPVTVKLPPGTPNGRVLRVRGKGA-VRKDGTRGDLLVTVEVAVPKDLSGKAREAL 366
Query: 917 RSLETSILEGGFKHNPR 933
+ E +PR
Sbjct: 367 EAFR----EATADEDPR 379
>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional.
Length = 365
Score = 232 bits (593), Expect = 1e-68
Identities = 125/307 (40%), Positives = 182/307 (59%), Gaps = 4/307 (1%)
Query: 624 EAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASAEASNFADAF---GDIFGDIFGSNRDR 680
EAYEVL D KR YD++GH + S S F+D F GDIF F NR +
Sbjct: 51 EAYEVLIDDNKRAQYDRFGHTAFEGGGGFEGFSGGFSGFSDIFEDFGDIFDSFFTGNRGQ 110
Query: 681 DNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCS 740
D N K G+DL Y +EI+LE A G+ +I + +C+SC G ++KGTSP C C+
Sbjct: 111 DKNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTSPSICNMCN 170
Query: 741 GQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMR 800
G G+V GFF + TCPKC G GK+I +PC C G G +K+ +T+E+KIPAGI++N +
Sbjct: 171 GSGRVMQGGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAGIDDNQQ 230
Query: 801 IRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTL 860
I+ G G + G+LYI+I IKPHK+F+R+G DL+ +PISF+ AALG EI+ T+
Sbjct: 231 IKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTI 290
Query: 861 NGKAFFV-IPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSL 919
K + IP+GT++ + ++ +G+ + + G+L + I+TP L KLL +L
Sbjct: 291 ASKKIKIKIPKGTENDEQIIIKNEGMPILHTEKFGNLILIIKIKTPKNLNSNAIKLLENL 350
Query: 920 ETSILEG 926
+ +
Sbjct: 351 SKELKDI 357
>gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1. Human
HSPH1 (also known as heat shock 105kDa/110kDa protein 1,
HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene
maps to 13q12.3) suppresses the aggregation of denatured
proteins caused by heat shock in vitro, and may
substitute for HSP70 family proteins to suppress the
aggregation of denatured proteins in cells under severe
stress. It reduces the protein aggregation and
cytotoxicity associated with Polyglutamine (PolyQ)
diseases, including Huntington's disease, which are a
group of inherited neurodegenerative disorders sharing
the characteristic feature of having insoluble protein
aggregates in neurons. The expression of HSPH1 is
elevated in various malignant tumors, including
malignant melanoma, and there is a direct correlation
between HSPH1 expression and B-cell non-Hodgkin
lymphomas (B-NHLs) aggressiveness and proliferation.
HSPH1 belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. Hsp70 chaperone
activity is also regulated by J-domain proteins.
Length = 383
Score = 231 bits (590), Expect = 6e-68
Identities = 128/390 (32%), Positives = 211/390 (54%), Gaps = 17/390 (4%)
Query: 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPK 132
++G D+G + +++ + + N R TPSVI++ +G AK Q +T+
Sbjct: 2 VVGFDVGFQSCYIAVARAGGIETVANEFSDRCTPSVISFGSKNRT-IGVAAKNQQITHAN 60
Query: 133 NTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISV----RGKKLAPPQISAEV 188
NT+ KR GR FN+ VQK+ + Y +V NG + V + QI+A +
Sbjct: 61 NTVSNFKRFHGRAFNDPFVQKEKENLSYDLVPLKNGGVGVKVMYMGEEHLFSVEQITAML 120
Query: 189 LRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAF 248
L K+K+TAE+ L +T+ VI+VP++F DA+R++ DA +I GL R++N+ TA AL +
Sbjct: 121 LTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNCLRLMNDMTAVALNY 180
Query: 249 GLDK-----SGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFD 303
G+ K + R +V D+G F VS + + +VL T D FLGG++FD
Sbjct: 181 GIYKQDLPSLDEKPRIVVFVDMGHSAFQVSACAF----NKGKLKVLGTAFDPFLGGKNFD 236
Query: 304 QRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAP 363
++++++ EF +D + AL R+ E+ K +L SS T++ N
Sbjct: 237 EKLVEHFCAEFKTKYKLDAKSKIRALLRLYQECEKLK-KLMSSNSTDLPLNIECFMNDKD 295
Query: 364 VHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKV 423
V + K+ R++ E L +L+ R P ++ +KV D++ + +VGG TR+P V+E++
Sbjct: 296 V--SGKMNRSQFEELCADLLQRIEVPLYSLLEQTHLKVEDVSAVEIVGGATRIPAVKERI 353
Query: 424 KEFFGKDPRRDINPDEAVAVGAAIQGSVLS 453
+FFGKD +N DEAVA G A+Q ++LS
Sbjct: 354 AKFFGKDVSTTLNADEAVARGCALQCAILS 383
>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional.
Length = 369
Score = 227 bits (581), Expect = 1e-66
Identities = 121/354 (34%), Positives = 190/354 (53%), Gaps = 22/354 (6%)
Query: 578 TEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRII 637
T+EEIK+ + + ++E R+ E+ + +K +I+EAYEVLSD +KR +
Sbjct: 17 TQEEIKRAYK---------RLVKEWHPDRHP-ENRKEAEQKFKEIQEAYEVLSDPQKRAM 66
Query: 638 YDQYGHAGIDPNMSGSSASAEA-----SNFADAFG-DIFGDIFGSNRDRDNN-NKGSNGK 690
YD++G+ G P + + +F + F DIF FG R ++ G+
Sbjct: 67 YDRFGYVGEQPPYQETESGGGFFEDIFKDFENIFNRDIFDIFFGERRTQEEQREYARRGE 126
Query: 691 DLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQ- 749
D+RY +E+TL G + ++ C C G G + G+ ++C C G G++R ++
Sbjct: 127 DIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERR 186
Query: 750 ---GFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGN 806
G F ++TC +C G GK+ C +C G GRI+R VKIPAG+E+ +R TG
Sbjct: 187 SFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKIPAGVEDGTVLRITGG 246
Query: 807 GEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFF 866
G G GG G+LY+ + ++P F+R G DL Y++ I + A LG +E P G
Sbjct: 247 GNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTM 306
Query: 867 V-IPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSL 919
+ IP GTQ +FRL+GKG+ N+R GDL +V +E P +L+ ++KLL+ L
Sbjct: 307 LKIPPGTQPETVFRLKGKGLPNMRYGRRGDLIVNVHVEIPKRLSREERKLLKEL 360
>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional.
Length = 371
Score = 226 bits (578), Expect = 3e-66
Identities = 127/340 (37%), Positives = 176/340 (51%), Gaps = 19/340 (5%)
Query: 588 SAEANAEEDKR-LRELA----ESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYG 642
S A+A+E K R+LA RN + + +K +I EAY VLSD+EKR YD++G
Sbjct: 11 SRTASADEIKSAYRKLALKYHPDRNKEKG---AAEKFAQINEAYAVLSDAEKRAHYDRFG 67
Query: 643 HAGIDPNMSGSSASAEASNFADAFGDIFGD-IFGSNRDRDNNNKGSNGKDLRYNLEITLE 701
A G + D F +FG FG R R + G DL ITLE
Sbjct: 68 TAPGAGMPGGDPFGGMGFDPMDIFEQLFGGAGFGGGRGR---RGPARGDDLETEARITLE 124
Query: 702 QAAYGFNTSIRVPSWDICKSCYGNGAKKGTS-PISCFTCSGQGQVRMQ-QGFFSI---QQ 756
QA G + V C+ C+G+ + G P +C TC G G VR Q + F + QQ
Sbjct: 125 QARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQ 184
Query: 757 TCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSN 816
CP C+G G++I PC C G GR + +T++VK+P GI+ RIR G G G G N
Sbjct: 185 PCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAGMGNEGPGG--N 242
Query: 817 GNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGK 876
G+LY+ I ++PH R+ + L YE I F+ AALGG+I PTL+G + GTQ G
Sbjct: 243 GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQVIEVKPGTQHGD 302
Query: 877 IFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLL 916
+ RLRG+G+ ++ + GDL I P QL+ ++ L
Sbjct: 303 LHRLRGQGMPRLQGAGTGDLIVEYEIAVPKQLSPEAREAL 342
>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional.
Length = 386
Score = 224 bits (572), Expect = 3e-65
Identities = 126/339 (37%), Positives = 176/339 (51%), Gaps = 23/339 (6%)
Query: 624 EAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASAEASNFAD---AFGDIFGDI------- 673
EAY+VLSD +KR YDQ+GHAG+ G S E + D FGDIFG
Sbjct: 53 EAYDVLSDPDKRSRYDQFGHAGVGGAAGGGGFSGEGMSMEDIFSMFGDIFGGHGGGFGGF 112
Query: 674 --FGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGT 731
FG + +GS DLR +++ L++ + G +V + C C+G GA+
Sbjct: 113 GGFGGGGSQQRVFRGS---DLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHGTGAEGNN 169
Query: 732 SPISCFTCSGQGQV-RMQQGFFSIQQT---CPKCQGAGKVIPHPCLDCNGIGRIKRNKTL 787
+C TC G G V R+Q QT CP C G GK+I C C G G + + +
Sbjct: 170 GSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVI 229
Query: 788 EVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFS 847
VKIPAG+ M++ G G G +GG NG+L + I +PH RD +DL Y + +S
Sbjct: 230 TVKIPAGVAEGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVP 289
Query: 848 TAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQ 907
TAALGG +E PT++GKA I GTQ GK+ RLR KG+ ++ GDL +V++ P
Sbjct: 290 TAALGGAVEVPTIDGKAKVKIEAGTQPGKVLRLRNKGLPSVNGYGTGDLLVNVSVYIPET 349
Query: 908 LTEYQKKLLRSLETSILEGGFKHNPRTK-TVLNKVKNFF 945
L++ +K+ L +E S FK K + K K+FF
Sbjct: 350 LSKEEKQTLEKMENS---DNFKPTTSIKEKIFKKFKSFF 385
>gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L. Human
HSPA4L (also known as 70-kDa heat shock protein 4-like,
APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to
4q28) is expressed ubiquitously and predominantly in the
testis. It is required for normal spermatogenesis and
plays a role in osmotolerance. HSPA4L belongs to the
105/110 kDa heat shock protein (HSP105/110) subfamily of
the HSP70-like family. HSP105/110s are believed to
function generally as co-chaperones of HSP70 chaperones,
acting as nucleotide exchange factors (NEFs), to remove
ADP from their HSP70 chaperone partners during the ATP
hydrolysis cycle. HSP70 chaperones assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 383
Score = 221 bits (565), Expect = 2e-64
Identities = 132/390 (33%), Positives = 218/390 (55%), Gaps = 17/390 (4%)
Query: 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPK 132
++GIDLG N +++ + I N R TP+ I+ +G AK Q VTN +
Sbjct: 2 VVGIDLGFLNCYIAVARSGGIETIANEYSDRCTPACISLGSRTRA-IGNAAKSQIVTNVR 60
Query: 133 NTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVR----GKKLAPPQISAEV 188
NTI+ K+L GR F++ VQ + +PY++ K NG + VR + A Q++ +
Sbjct: 61 NTIHGFKKLHGRSFDDPIVQTERIRLPYELQKMPNGSVGVKVRYLEEERPFAIEQVTGML 120
Query: 189 LRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAF 248
L K+K+T+E+ L + + VI++P++F DA+R++ A ++AGL R++NE TA ALA+
Sbjct: 121 LAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCLRLMNETTAVALAY 180
Query: 249 GLDKSG-----KSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFD 303
G+ K + RN+V D+G + VS+ + + +VL+T D +LGG +FD
Sbjct: 181 GIYKQDLPALDEKPRNVVFIDMGHSAYQVSVCAF----NKGKLKVLATTFDPYLGGRNFD 236
Query: 304 QRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAP 363
+ ++DY DEF I+++++S AL R+ E+ K +L S+ +++ N
Sbjct: 237 EALVDYFCDEFKTKYKINVKENSRALLRLYQECEKLK-KLMSANASDLPLNIECFMNDLD 295
Query: 364 VHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKV 423
V + K+ RA+ E L L+ R P + ++ A ++ DI I +VGG TR+P V+E++
Sbjct: 296 V--SSKMNRAQFEQLCASLLARVEPPLKAVMEQANLQREDIYSIEIVGGATRIPAVKEQI 353
Query: 424 KEFFGKDPRRDINPDEAVAVGAAIQGSVLS 453
FF KD +N DEAVA G A+Q ++LS
Sbjct: 354 TSFFLKDISTTLNADEAVARGCALQCAILS 383
>gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4. Human
HSPA4 (also known as 70-kDa heat shock protein 4, APG-2,
HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps
to 5q31.1) responds to acidic pH stress, is involved in
the radioadaptive response, is required for normal
spermatogenesis and is overexpressed in hepatocellular
carcinoma. It participates in a pathway along with NBS1
(Nijmegen breakage syndrome 1, also known as p85 or
nibrin), heat shock transcription factor 4b (HDF4b), and
HSPA14 (belonging to a different HSP70 subfamily) that
induces tumor migration, invasion, and transformation.
HSPA4 expression in sperm was increased in men with
oligozoospermia, especially in those with varicocele.
HSPA4 belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. Hsp70 chaperone
activity is also regulated by J-domain proteins.
Length = 383
Score = 220 bits (562), Expect = 5e-64
Identities = 129/390 (33%), Positives = 213/390 (54%), Gaps = 17/390 (4%)
Query: 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPK 132
++GIDLG + V++ + I N R TP+ I++ +GA AK Q ++N K
Sbjct: 2 VVGIDLGFQSCYVAVARAGGIETIANEYSDRCTPACISFGPKNRS-IGAAAKSQVISNAK 60
Query: 133 NTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISV----RGKKLAPPQISAEV 188
NT+ KR GR F++ VQ + + Y +V+ G I V + Q++A +
Sbjct: 61 NTVQGFKRFHGRAFSDPFVQAEKPSLAYDLVQLPTGSTGIKVMYMEEERNFTTEQVTAML 120
Query: 189 LRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAF 248
L K+K+TAE L + + V++VP ++ DA+R++ DA +IAGL R++NE TA ALA+
Sbjct: 121 LTKLKETAESALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRLMNETTAVALAY 180
Query: 249 GLDKSG-----KSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFD 303
G+ K + RN+V D+G + VS+ + + +VL+T DT LGG FD
Sbjct: 181 GIYKQDLPALEEKPRNVVFVDMGHSAYQVSVCAF----NKGKLKVLATAFDTTLGGRKFD 236
Query: 304 QRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAP 363
+ +++Y +EF K +D++ AL R+ E+ K +L S+ +++ N
Sbjct: 237 EVLVNYFCEEFGKKYKLDIKSKIRALLRLSQECEKLK-KLMSANASDLPLNIECFMND-- 293
Query: 364 VHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKV 423
+ ++ + R K + D+L+ R P R ++ A +K DI + +VGG TR+P V+EK+
Sbjct: 294 IDVSGTMNRGKFLEMCDDLLARVEPPLRSVLEQAKLKKEDIYAVEIVGGATRIPAVKEKI 353
Query: 424 KEFFGKDPRRDINPDEAVAVGAAIQGSVLS 453
+FFGK+ +N DEAVA G A+Q ++LS
Sbjct: 354 SKFFGKEVSTTLNADEAVARGCALQCAILS 383
>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional.
Length = 397
Score = 220 bits (562), Expect = 1e-63
Identities = 125/356 (35%), Positives = 186/356 (52%), Gaps = 38/356 (10%)
Query: 621 KIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSAS--------AEASNFAD---AFGDI 669
++ EAYEVLS+ +KR YDQ+GHAG+ GSSA+ +F D AF D+
Sbjct: 48 EVNEAYEVLSNDDKRRRYDQFGHAGV-----GSSAASGGGPGYGGGGGDFNDIFSAFNDM 102
Query: 670 FG--------------DIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS 715
FG D+FG R + G G DL+ L++TLE+ A G ++++
Sbjct: 103 FGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIKK 162
Query: 716 WDICKSCYGNGAKKGTSPISCFTCSGQGQVR-----MQQGFFSIQQTCPKCQGAGKVIPH 770
CK C G G+K G + C TC G G+VR M F +I CP C G G+V+
Sbjct: 163 QVPCKECNGTGSKTGATET-CPTCHGSGEVRQASKTMFGQFVNIT-ACPTCGGEGRVVKD 220
Query: 771 PCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKV 830
C C G G + T++V +PAG+++ + G G G GG+ G+L + I KPH++
Sbjct: 221 RCPACYGEGIKQGEVTVKVTVPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHEL 280
Query: 831 FERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRS 890
F R+GDD+ Y + +S+ LG ++E PTL+G IP GTQ + R+ GKGI ++R
Sbjct: 281 FVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGAVKLTIPAGTQPETMLRIPGKGIGHLRG 340
Query: 891 SIPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRT-KTVLNKVKNFF 945
S GD + V + P +++ K+LL+ L+ S HN + K+ K K+ F
Sbjct: 341 SGRGDQYVRVNVFVPKEVSHQDKELLKELKKSSHISPNAHNDKEEKSFFEKAKDIF 396
>gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110
kDa heat shock proteins including HSPA4, HYOU1, and
similar proteins. This subfamily include the human
proteins, HSPA4 (also known as 70-kDa heat shock protein
4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4
gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat
shock protein 4-like, APG-1, HSPH3, and OSP94; the human
HSPA4L gene maps to 4q28), and HSPH1 (also known as heat
shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B;
NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1
(also known as human hypoxia up-regulated 1, GRP170;
HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene
maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p,
Sse2p, and Lhs1p, and a sea urchin sperm receptor. It
belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family, and
includes proteins believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is also regulated by J-domain proteins.
Length = 377
Score = 215 bits (549), Expect = 3e-62
Identities = 119/384 (30%), Positives = 199/384 (51%), Gaps = 18/384 (4%)
Query: 74 IGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKN 133
G+DLG NS +++ ++ N R+TPSV+ + L G K + +N KN
Sbjct: 1 FGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYL-GETGKNKQTSNIKN 59
Query: 134 TIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVR--GKKL--APPQISAEVL 189
T+ KR+IG ++ + +++ K+V+ D+ VR G+K + Q++A +
Sbjct: 60 TVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFI 119
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
K+K T + IT+ I VP ++ + QR DA RIAGL RI+N+ TAA +++G
Sbjct: 120 DKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYG 179
Query: 250 LDKS-----GKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQ 304
+ K+ + R + D+G ++ SI+ + Q +VL T D GG DFD
Sbjct: 180 IFKTDLPEGEEKPRIVAFVDIGHSSYTCSIVAFK----KGQLKVLGTACDKHFGGRDFDL 235
Query: 305 RIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPV 364
I ++ DEF ID+R++ A RI +AE+ K LS++ N P+ S V
Sbjct: 236 AITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANT----NAPFSVESVMNDV 291
Query: 365 HLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVK 424
++ +++R +LE LV L+ R EP A+ A + +++ + ++GG TR+P +++ +
Sbjct: 292 DVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSIS 351
Query: 425 EFFGKDPRRDINPDEAVAVGAAIQ 448
E FGK +N DEA+A GAA
Sbjct: 352 EAFGKPLSTTLNQDEAIAKGAAFI 375
>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional.
Length = 365
Score = 212 bits (541), Expect = 3e-61
Identities = 126/345 (36%), Positives = 179/345 (51%), Gaps = 22/345 (6%)
Query: 592 NAEED---KRLRELAESRN---HGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAG 645
NA ++ K RELA+ + H + + +K +I EAYEVLSD +KR YDQ G
Sbjct: 14 NASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTG--T 71
Query: 646 IDPNMSGSSASAEASNFADAFGDIFGDIFGSNRDRDNNNKGSNGK-------DLRYNLEI 698
+D GS+ + + DIF IFG N D + N + D+ NL+I
Sbjct: 72 VDFGAGGSNFNWDNFTHFSDINDIFNQIFGGNFGSDFFSGFGNQQSTRNIDLDIYTNLDI 131
Query: 699 TLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQ--QGFFSIQQ 756
+LE A YG I+ +C C G GAK G I+C TC G GQ R+ QGFF +
Sbjct: 132 SLEDAYYGTEKRIKYRRNAMCPDCSGTGAKNGKL-ITCPTCHGTGQQRIVRGQGFFRMVT 190
Query: 757 --TCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLNGG 814
TC C G G++ C CNG G + N+ + VKIP G +N+R+R G G+ GG
Sbjct: 191 VTTCRTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIPKGATDNLRLRVKGKGQS--YGG 248
Query: 815 SNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQS 874
G+LY+ + + +R DDL+ + I+F AALGGEIE K IPEGTQ
Sbjct: 249 RTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREKYNLKIPEGTQP 308
Query: 875 GKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSL 919
G++ +++G G+ ++ GDL + +E P +LT QK+L+R
Sbjct: 309 GEVLKIKGAGMPHLNGHGSGDLLVRINVEVPKRLTSKQKELIREF 353
>gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of
Saccharmomyces cerevisiae Ssz1pp and similar proteins.
Saccharomyces cerevisiae Ssz1p (also known as
/Pdr13p/YHR064C) belongs to the heat shock protein 70
(HSP70) family of chaperones that assist in protein
folding and assembly and can direct incompetent "client"
proteins towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). Some
family members are not chaperones but rather, function
as NEFs for their Hsp70 partners, while other family
members function as both chaperones and NEFs. Ssz1 does
not function as a chaperone; it facilitates the
interaction between the HSP70 Ssb protein and its
partner J-domain protein Zuo1 (also known as zuotin) on
the ribosome. Ssz1 is found in a stable heterodimer
(called RAC, ribosome associated complex) with Zuo1.
Zuo1 can only stimulate the ATPase activity of Ssb, when
it is in complex with Ssz1. Ssz1 binds ATP but neither
nucleotide-binding, hydrolysis, or its SBD, is needed
for its in vivo function.
Length = 386
Score = 212 bits (541), Expect = 6e-61
Identities = 125/399 (31%), Positives = 190/399 (47%), Gaps = 35/399 (8%)
Query: 73 IIGIDLGTTNSCVSIIEGSQPK--VIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTN 130
+IGI+ G T S SI +Q K VI N +G R PS I+Y + G AK Q + N
Sbjct: 2 VIGINFGNTYS--SIACINQGKADVIANEDGERQIPSAISYH-GEQEYHGNQAKAQLIRN 58
Query: 131 PKNTIYAAKRLIGRKFNE-KEVQKDISLMPYKIVKADNGDAWISVRG----KKLAPPQIS 185
KNTI + L+G+ F+E + V G L +++
Sbjct: 59 AKNTITNFRDLLGKPFSEIDVSAAAAAAPVPVAVIDVGGTVQEKEEPVPKETILTVHEVT 118
Query: 186 AEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAA 245
LR++K+ AED+LG ++ AV++VP +F+D Q +A A AGL V ++I EP AA
Sbjct: 119 VRFLRRLKEAAEDFLGKKVAGAVLSVPTWFSDEQTEALVKAAEAAGLPVLQLIPEPAAAL 178
Query: 246 LAFGLDKSGKS---DRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDF 302
LA+ + + DRN+VV D GG DVS+I + + +L+T D LGG+
Sbjct: 179 LAYDAGEPTEDEALDRNVVVADFGGTRTDVSVIAVR----GGLYTILATAHDPGLGGDTL 234
Query: 303 DQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGA 362
D ++ + EF K D R ++ AL +++A +E K LS+S + +A G
Sbjct: 235 DDALVKHFAKEFTKKTKTDPRTNARALAKLRAESEITKKTLSASTSATCSVESLA--EGI 292
Query: 363 PVHLNLKITRAKLELL---VDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKV 419
H + I R + ELL V + A+ AG+ DI++++LVGG PK+
Sbjct: 293 DFHSS--INRLRFELLASAVFRQFAAFVTS---AVAKAGLDALDIDEVLLVGGTAFTPKL 347
Query: 420 QEKVKEFFGK--------DPRRDINPDEAVAVGAAIQGS 450
+ F + + ++P E VA G AIQ S
Sbjct: 348 ASNLSYLFPETTTITAPITVSKALDPSELVARGCAIQAS 386
>gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and
HSP40. The C-terminal region of the DnaJ/Hsp40 protein
mediates oligomerization and binding to denatured
polypeptide substrate. DnaJ/Hsp40 is a widely conserved
heat-shock protein. It prevents the aggregation of
unfolded substrate and forms a ternary complex with both
substrate and DnaK/Hsp70; the N-terminal J-domain of
DnaJ/Hsp40 stimulates the ATPase activity of DnaK/Hsp70.
Length = 158
Score = 187 bits (478), Expect = 4e-55
Identities = 67/129 (51%), Positives = 88/129 (68%)
Query: 780 RIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLH 839
R++ KTL VKIPAG+++ R+R G G+ G NGG G+LY+ I +KPH VF RDG+DL+
Sbjct: 30 RVREKKTLTVKIPAGVDDGQRLRLRGEGDAGPNGGPPGDLYVVIRVKPHPVFRRDGNDLY 89
Query: 840 YEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCH 899
E+PIS + A LGGEIE PTL GK IP GTQ G + RL+GKG+ +R GDL+
Sbjct: 90 CEVPISLTEALLGGEIEVPTLGGKVKLKIPPGTQPGTVLRLKGKGMPRLRGGGRGDLYVE 149
Query: 900 VTIETPVQL 908
V +E P +L
Sbjct: 150 VKVEFPKKL 158
Score = 44.0 bits (105), Expect = 6e-05
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 10/77 (12%)
Query: 836 DDLHYEMPISFSTAALGGEIEAPTLNGKAFFV---------IPEGTQSGKIFRLRGKGIK 886
DL Y++ ++ A G E E + K V IP G G+ RLRG+G
Sbjct: 1 ADLRYDLELTLEEAYFGKEKEI-KIPRKVTRVREKKTLTVKIPAGVDDGQRLRLRGEGDA 59
Query: 887 NIRSSIPGDLFCHVTIE 903
PGDL+ + ++
Sbjct: 60 GPNGGPPGDLYVVIRVK 76
Score = 34.3 bits (80), Expect = 0.11
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 690 KDLRYNLEITLEQAAYGFNTSIRVPSWDI 718
DLRY+LE+TLE+A +G I++P
Sbjct: 1 ADLRYDLELTLEEAYFGKEKEIKIPRKVT 29
>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional.
Length = 369
Score = 195 bits (496), Expect = 5e-55
Identities = 130/363 (35%), Positives = 194/363 (53%), Gaps = 17/363 (4%)
Query: 591 ANAEEDKR-LRELA----ESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAG 645
+N E K+ R+LA RN G+ + +K I EAY VLSD +KR +YD+YG G
Sbjct: 15 SNQETIKKSYRKLALKYHPDRNAGDK--EAEEKFKLINEAYGVLSDEKKRALYDRYGKKG 72
Query: 646 IDPNMSGSSASAEASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAY 705
+ N +G+S S + S+F + G F D FG K S D +E++ ++A +
Sbjct: 73 L--NQAGASQS-DFSDFFEDLGSFFEDAFGFGARGSKRQKSSIAPDYLQTIELSFKEAVF 129
Query: 706 GFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAG 765
G +I+V +C+SC G GAK +C C+GQGQV M+QGF S QTC CQG G
Sbjct: 130 GCKKTIKVQYQSVCESCDGTGAKDKALE-TCKQCNGQGQVFMRQGFMSFAQTCGACQGKG 188
Query: 766 KVIPHPCLDCNGIGRIKRNKTLEVKIPAGI--ENNMRIRSTGNGEPGLNGGSNGNLYIEI 823
K+I PC C G I +++ ++ IP GI +N M +++ GN G G+LY+E
Sbjct: 189 KIIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKGN---EYEKGKRGDLYLEA 245
Query: 824 HIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAF-FVIPEGTQSGKIFRLRG 882
+K + F+R+G DL E P+ F+T ALG I+ P+L G IP + + F R
Sbjct: 246 RVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDRQTFAFRN 305
Query: 883 KGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRTKTVLNKVK 942
+G+K+ SS G L + + P L + Q++LL L S G H +T ++K+K
Sbjct: 306 EGVKHPESSYRGSLIVELQVIYPKSLNKEQQELLEKLHASFGYEGEPHKSVLETCISKIK 365
Query: 943 NFF 945
++F
Sbjct: 366 DWF 368
>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional.
Length = 372
Score = 183 bits (466), Expect = 7e-51
Identities = 109/323 (33%), Positives = 170/323 (52%), Gaps = 28/323 (8%)
Query: 618 KSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASAEASNFAD------------- 664
K ++I EA +VL D +KR YDQ+GHA D +S +SNF D
Sbjct: 45 KMVEINEAADVLLDKDKRKQYDQFGHAAFD------GSSGFSSNFGDFEDLFSNMGSSGF 98
Query: 665 -AFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCY 723
+F +IF D FGSN+ + + + G+ + ++ +T ++ +G + I + C C+
Sbjct: 99 SSFTNIFSDFFGSNKS--DYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCF 156
Query: 724 GNGAKKGTSPISCFTCSGQGQVRMQQ--GFFSIQQ--TCPKCQGAGKVIPHPCLDCNGIG 779
G+GA+ + C C G G+V +Q+ GFF QQ C C GAGK+I + C +C G G
Sbjct: 157 GSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKG 216
Query: 780 RIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFER-DGDDL 838
+ K +EV IP GI N +I+ + G LN G NG+L I+I++K KVFE + +D+
Sbjct: 217 KYLERKKIEVNIPKGIRPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDI 276
Query: 839 HYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGI-KNIRSSIPGDLF 897
IS+ A LG EI TL+G + +P+ S ++ + KG+ K+I GDL
Sbjct: 277 LMTYNISYLDAILGNEIIIKTLDGDIKYKLPKSINSNELIIINNKGLYKSINKDKRGDLI 336
Query: 898 CHVTIETPVQLTEYQKKLLRSLE 920
V I P L++ +K+L+ +
Sbjct: 337 IKVNIVVPKNLSKKEKELIEQIY 359
>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional.
Length = 306
Score = 146 bits (370), Expect = 8e-39
Identities = 99/350 (28%), Positives = 148/350 (42%), Gaps = 88/350 (25%)
Query: 588 SAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGID 647
S E +AE R +E+AE A+EVLSD ++R YDQ D
Sbjct: 37 SKEPDAEA--RFKEVAE--------------------AWEVLSDEQRRAEYDQLWQHRND 74
Query: 648 PNMSGSSASAEASNF-ADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYG 706
P + + +F A+ F DIF IFG + + + G D+ + + LE+
Sbjct: 75 PQFNRQFQHGDGQSFNAEDFDDIFSSIFGQHARQSRQRPAARGHDIEIEVAVFLEETLTE 134
Query: 707 FNTSIR--VPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGA 764
+I +P ++ F I+Q PK
Sbjct: 135 HKRTISYNLPVYNA--------------------------------FGMIEQEIPK---- 158
Query: 765 GKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIH 824
TL VKIPAG+ N RIR G G PG NGG NG+L++ IH
Sbjct: 159 ---------------------TLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIH 197
Query: 825 IKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKG 884
I PH +F+ G DL +P++ AALG ++ PTL IP G+Q+G+ R++GKG
Sbjct: 198 IAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKG 257
Query: 885 IKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRT 934
+ + + + GDL+ + I P + E L + L + + F +PR
Sbjct: 258 LVSKKQT--GDLYAVLKIVMPPKPDEKTAALWQQLADA--QSSF--DPRK 301
>gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone
protein, and related proteins. This bacterial subfamily
includes the uncharacterized Escherichia coli YegD. It
belongs to the heat shock protein 70 (HSP70) family of
chaperones that assist in protein folding and assembly
and can direct incompetent "client" proteins towards
degradation. Typically, HSP70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. YegD lacks the SBD. HSP70
chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some family members are not chaperones
but instead, function as NEFs for their Hsp70 partners,
other family members function as both chaperones and
NEFs.
Length = 415
Score = 143 bits (362), Expect = 1e-36
Identities = 103/445 (23%), Positives = 173/445 (38%), Gaps = 104/445 (23%)
Query: 74 IGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAY-----QENGEILVGAPAKRQAV 128
+GID GT+NS V++ QP+++ G+ T PS + + E+L G A +
Sbjct: 1 LGIDFGTSNSAVAVARDGQPRLVPLEGGSTTLPSALFFPHEESALEREVLFGRAAIAAYL 60
Query: 129 TNPKNTIY--AAKRLIG-RKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQIS 185
P + K +G F E + G++L +
Sbjct: 61 EGPGEGRLMRSLKSFLGSSLFRET-----------------------RIFGRRLTFEDLV 97
Query: 186 AEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQ----RQATKD---AGRIAGLEVKRII 238
A L ++K+ AE LG EI VI P +F QA A R AG +
Sbjct: 98 ARFLAELKQRAEAALGAEIDRVVIGRPVHFVGDDEAADAQAEARLRAAARAAGFKDVEFQ 157
Query: 239 NEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEI---ADVDGEKQFEVLSTNGDT 295
EP AAAL + + + ++V D+GGGT D S++ + +++ ++L+ +G
Sbjct: 158 YEPIAAALDYE--QRLTREELVLVVDIGGGTSDFSLVRLGPSRRGRADRRADILAHSG-V 214
Query: 296 FLGGEDFDQRIID------------------------YILDEFNKINGI----------- 320
+GG DFD+R+ + + I
Sbjct: 215 RIGGTDFDRRLSLHAVMPLLGKGSTYRSGGKGLPVPNSYFADLATWHKINFLYTPKTLRE 274
Query: 321 --DLRKDS---------IALQ------RIKASAERAKIELSSSKQTEINEPYIAMSNGAP 363
+L +D+ I + R+ + E AKI LSS +T I+ ++
Sbjct: 275 LRELARDAVEPELLERLITVIEEELGHRLARAVEAAKIALSSQDETRIDLDFV------E 328
Query: 364 VHLNLKITRAKLELLVDELITRTIEPC-RIAIKDAGIKVSDINDIILVGGMTRMPKVQEK 422
V L +TRA+ E + + R IE A+ AG+ I+ + L GG + +P V++
Sbjct: 329 VGLEAPVTRAEFEGAIAPDLER-IEAAVDEALAQAGVSPDAIDRVFLTGGSSLVPAVRQA 387
Query: 423 VKEFFGKDPRRDINPDEAVAVGAAI 447
F + + +VA G A+
Sbjct: 388 FAARFPAARIVEGDAFGSVASGLAL 412
>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional.
Length = 421
Score = 135 bits (341), Expect = 5e-34
Identities = 109/332 (32%), Positives = 156/332 (46%), Gaps = 38/332 (11%)
Query: 621 KIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASAEASNFADAFGDIFGDIFGSNRDR 680
+I AYEVLSD EKR IYD+YG G++ + AS D+F IFG R
Sbjct: 69 EISRAYEVLSDPEKRKIYDEYGEEGLEGGEQPADAS-----------DLFDLIFGGGR-- 115
Query: 681 DNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCS 740
G+D+ +L++TLEQ G + + IC +C G+G K + + C C+
Sbjct: 116 -KPGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPK-DAFVDCKLCN 173
Query: 741 GQG-QVRMQQGFFSIQQT---CPKCQGAGKVIPHP--CLDCNGIGRIKRNKTLEVKIPAG 794
GQG +V+++Q I QT C C G GK+IP C +C+G G K K LEV I G
Sbjct: 174 GQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKG 233
Query: 795 IENNMRIRSTGNGEPGLNGGS-NGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGG 853
+ N +I T +GE GN+ ++ KPH F+R+G DL IS A G
Sbjct: 234 VPNQHKI--TFHGEADEKPNEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGF 291
Query: 854 EIEAPTLNGKAFFV-IPEG--TQSGKIFRLRGKGIKNIRSS-IPGDLFCHVTIETPVQ-- 907
L+G+ V P G + G I + +G+ +S G+L+ + PV
Sbjct: 292 VFYITHLDGRKLLVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFPVDRK 351
Query: 908 LTEYQKKLLRSLETSILEGGFKHNPRTKTVLN 939
T +K++L+SL F NP K L
Sbjct: 352 FTNEEKEILKSL--------FPQNPEEKKDLE 375
>gnl|CDD|212671 cd10229, HSPA12_like_NBD, Nucleotide-binding domain of HSPA12A,
HSPA12B and similar proteins. Human HSPA12A (also known
as 70-kDa heat shock protein-12A) and HSPA12B (also
known as 70-kDa heat shock protein-12B, chromosome 20
open reading frame 60/C20orf60, dJ1009E24.2) belong to
the heat shock protein 70 (HSP70) family of chaperones
that assist in protein folding and assembly, and can
direct incompetent "client" proteins towards
degradation. Typically, HSP70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. HSP70 chaperone activity is
regulated by various co-chaperones: J-domain proteins
and nucleotide exchange factors (NEFs). No co-chaperones
have yet been identified for HSPA12A or HSPA12B. The
gene encoding HSPA12A maps to 10q26.12, a cytogenetic
region that might represent a common susceptibility
locus for both schizophrenia and bipolar affective
disorder; reduced expression of HSPA12A has been shown
in the prefrontal cortex of subjects with schizophrenia.
HSPA12A is also a candidate gene for forelimb-girdle
muscular anomaly, an autosomal recessive disorder of
Japanese black cattle. HSPA12A is predominantly
expressed in neuronal cells. It may also play a role in
the atherosclerotic process. The gene encoding HSPA12B
maps to 20p13. HSPA12B is predominantly expressed in
endothelial cells, is required for angiogenesis, and may
interact with known angiogenesis mediators. It may be
important for host defense in microglia-mediated immune
response. HSPA12B expression is up-regulated in
lipopolysaccharide (LPS)-induced inflammatory response
in the spinal cord, and mostly located in active
microglia; this induced expression may be regulated by
activation of MAPK-p38, ERK1/2 and SAPK/JNK signaling
pathways. Overexpression of HSPA12B also protects
against LPS-induced cardiac dysfunction and involves the
preserved activation of the PI3K/Akt signaling pathway.
Length = 404
Score = 118 bits (298), Expect = 2e-28
Identities = 99/427 (23%), Positives = 161/427 (37%), Gaps = 70/427 (16%)
Query: 73 IIGIDLGTTNSCVSI-IEGSQPKVIE--------NSEGARTTPSVIAYQENGEIL-VGAP 122
++GID GTT S V+ S P I G P+ I Y G+++ G
Sbjct: 2 VVGIDFGTTFSGVAYAFLDSSPPDIRVITRWPGGEGRGYCKVPTEILYDPEGKLVAWGYE 61
Query: 123 AKRQAVTNPKNTIYAAKRLIGRKF------NEKEVQKDISLMPYKIVKADNGDAWISVRG 176
A+R + L F + ++Q D L P
Sbjct: 62 AER---EYAELEAEDEGWLFFEWFKLLLDPDALKLQGDDKLKP---------------LP 103
Query: 177 KKLAPPQISAEVLRKMKKTAEDYLGGEITEA---------VITVPAYFNDAQRQATKDAG 227
+ A+ LR + + A + L V+TVPA ++DA +QA ++A
Sbjct: 104 PGKTAVDVIADYLRYLYEHALEELKKTYGNGEFTALDIEWVLTVPAIWSDAAKQAMREAA 163
Query: 228 RIAGLEVKR-------IINEPTAAALAF----GLDKSGKSDRNIVVYDLGGGTFDVSIIE 276
AGL R I+ EP AAAL + + K +V D GGGT D+++ E
Sbjct: 164 IKAGLVSSREGPDRLLIVLEPEAAALYCLKLLLISLNLKPGDGFLVCDAGGGTVDLTVYE 223
Query: 277 IADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASA 336
+ V+ + E+ + +G G D+ + + + ++ K +
Sbjct: 224 VTSVEPLRLKELAAGSGG-LCGSTFVDRAFEELLKERLGELFYELPSKSPALWLILMRFF 282
Query: 337 ERAKIEL-SSSKQTEINEPYI-AMSNGAPVHL----NLKITRAKLELLVDELITRTIEPC 390
E K + T I P A+S P LKI+ ++ L D +I I+
Sbjct: 283 ETIKRSFGGTDNDTNIVLPGSLALSKKDPERGIRNGELKISGEDMKSLFDPVIEEIID-- 340
Query: 391 RIAIKD---AGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAI 447
I++ K + I LVGG P ++ ++KE F R + P + A +
Sbjct: 341 --LIEEQLEQAEKGDKVKYIFLVGGFGESPYLRSRLKERFSSRGIRVLRPPDPQL--AVV 396
Query: 448 QGSVLSG 454
+G+VL G
Sbjct: 397 RGAVLFG 403
>gnl|CDD|199908 cd10719, DnaJ_zf, Zinc finger domain of DnaJ and HSP40.
Central/middle or CxxCxGxG-motif containing domain of
DnaJ/Hsp40 (heat shock protein 40). DnaJ proteins are
highly conserved and play crucial roles in protein
translation, folding, unfolding, translocation, and
degradation. They act primarily by stimulating the
ATPase activity of Hsp70s, an important chaperonin
family. Hsp40 proteins are characterized by the presence
of an N-terminal J domain, which mediates the
interaction with Hsp70. This central domain contains
four repeats of a CxxCxGxG motif and binds to two Zinc
ions. It has been implicated in substrate binding.
Length = 65
Score = 100 bits (251), Expect = 1e-25
Identities = 35/65 (53%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 719 CKSCYGNGAKKGTSPISCFTCSGQGQVRMQQ----GFFSIQQTCPKCQGAGKVIPHPCLD 774
C +C G+GAK GT P +C TC G GQVR Q GFF Q TCP C G GK+I PC
Sbjct: 1 CPTCNGSGAKPGTKPKTCPTCGGSGQVRQVQGTGFGFFQTQTTCPTCGGTGKIIKDPCPK 60
Query: 775 CNGIG 779
C G G
Sbjct: 61 CKGKG 65
Score = 30.7 bits (70), Expect = 0.47
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 758 CPKCQGAG---KVIPHPCLDCNGIGRIKRN 784
CP C G+G P C C G G++++
Sbjct: 1 CPTCNGSGAKPGTKPKTCPTCGGSGQVRQV 30
>gnl|CDD|216058 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain. The central
cysteine-rich (CR) domain of DnaJ proteins contains four
repeats of the motif CXXCXGXG where X is any amino acid.
The isolated cysteine rich domain folds in zinc
dependent fashion. Each set of two repeats binds one
unit of zinc. Although this domain has been implicated
in substrate binding, no evidence of specific
interaction between the isolated DNAJ cysteine rich
domain and various hydrophobic peptides has been found.
Length = 65
Score = 92.4 bits (230), Expect = 8e-23
Identities = 33/65 (50%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 719 CKSCYGNGAKKGTSPISCFTCSGQGQVRMQQ----GFFSIQQTCPKCQGAGKVIPHPCLD 774
C C+G GAK G P +C C+G GQV +Q G F +QQTCPKC G GK+I PC
Sbjct: 1 CPHCHGTGAKPGKKPKTCPQCNGSGQVVKRQRTPGGVFQMQQTCPKCGGTGKIIKDPCKV 60
Query: 775 CNGIG 779
C G G
Sbjct: 61 CKGKG 65
>gnl|CDD|216569 pfam01556, DnaJ_C, DnaJ C terminal domain. This family consists of
the C terminal region form the DnaJ protein. Although
the function of this region is unknown, it is always
found associated with pfam00226 and pfam00684. DnaJ is a
chaperone associated with the Hsp70 heat-shock system
involved in protein folding and renaturation after
stress.
Length = 81
Score = 83.4 bits (207), Expect = 2e-19
Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 837 DLHYEMPISFSTAALGGEIEAPTLNGKAFFV-IPEGTQSGKIFRLRGKGI-KNIRSSIPG 894
DL+ +PIS A LGG +E PTL+G+ + IP GTQ G R++GKG+ N + G
Sbjct: 1 DLYVTLPISLKEALLGGTVEVPTLDGRKVKIKIPAGTQPGDKLRIKGKGMPINKGGNGRG 60
Query: 895 DLFCHVTIETPVQLTEYQKKL 915
DL + ++ P +L+ QK+L
Sbjct: 61 DLIVTLNVKIPKKLSSEQKEL 81
Score = 36.4 bits (85), Expect = 0.006
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 784 NKTLEVKIPAGIENNMRIRSTGNG-EPGLNGGSNGNLYIEIHIK-PHKVFER 833
+ +++KIPAG + ++R G G G G+L + +++K P K+
Sbjct: 26 GRKVKIKIPAGTQPGDKLRIKGKGMPINKGGNGRGDLIVTLNVKIPKKLSSE 77
>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional.
Length = 291
Score = 87.3 bits (216), Expect = 1e-18
Identities = 45/133 (33%), Positives = 69/133 (51%), Gaps = 7/133 (5%)
Query: 787 LEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISF 846
L V+IP G+ IR G G G G+LY+ + + PH VF +GDDL+ + +
Sbjct: 158 LSVRIPPGVREGQVIRLAGKGRQG------GDLYLVVRLLPHPVFRLEGDDLYATVDVPA 211
Query: 847 STAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPV 906
A +GG++ TL+G IP TQ+G+ RL+GKG + GD + V I P
Sbjct: 212 PIAVVGGKVRVMTLDGPVEVTIPPRTQAGRKLRLKGKGWPR-GPAGRGDQYAEVRITIPT 270
Query: 907 QLTEYQKKLLRSL 919
+ T +++L + L
Sbjct: 271 RPTPEEERLYKQL 283
Score = 52.2 bits (125), Expect = 4e-07
Identities = 70/287 (24%), Positives = 99/287 (34%), Gaps = 76/287 (26%)
Query: 578 TEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRII 637
+++EIKK + D AE +K +I EAY VLSD EKR I
Sbjct: 17 SQDEIKKAFKKLARKYHPDVNKSPGAE------------EKFKEINEAYTVLSDPEKRRI 64
Query: 638 YDQYGHAGID---------PNMSGSSASAEASNFADAFGDIFG--DIFGSNRD--RDNNN 684
YD YG P G + +F+D F +FG FG D
Sbjct: 65 YDTYGTTAASAGWQGPPPGPPGGGDFSGFNVGDFSDFFQQLFGGRGGFGGFGDLFGSVGR 124
Query: 685 KGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQ 744
+ G+DL L +TLE+A G + V ++ + I GQ
Sbjct: 125 RARKGRDLEAELPLTLEEAYRGGEKVVEV------------AGERLSVRIPPGVREGQ-V 171
Query: 745 VRMQQGFFSIQQTCPKCQGAG-------KVIPHPCLDCNG---------------IGRIK 782
+R+ G +++PHP G +G
Sbjct: 172 IRL-----------AGKGRQGGDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKV 220
Query: 783 RNKTL----EVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHI 825
R TL EV IP + ++R G G P G G+ Y E+ I
Sbjct: 221 RVMTLDGPVEVTIPPRTQAGRKLRLKGKGWPRGPAG-RGDQYAEVRI 266
Score = 38.0 bits (88), Expect = 0.016
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 833 RDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFV-IPEGTQSGKIFRLRGKGIKNIRSS 891
R G DL E+P++ A GGE + + G+ V IP G + G++ RL GKG +
Sbjct: 127 RKGRDLEAELPLTLEEAYRGGE-KVVEVAGERLSVRIPPGVREGQVIRLAGKGRQG---- 181
Query: 892 IPGDLFCHVTIE 903
GDL+ V +
Sbjct: 182 --GDLYLVVRLL 191
>gnl|CDD|212668 cd10225, MreB_like, MreB and similar proteins. MreB is a bacterial
protein which assembles into filaments resembling those
of eukaryotic F-actin. It is involved in determining the
shape of rod-like bacterial cells, by assembling into
large fibrous spirals beneath the cell membrane. MreB
has also been implicated in chromosome segregation;
specifically MreB is thought to bind to and segregate
the replication origin of bacterial chromosomes.
Length = 320
Score = 81.3 bits (202), Expect = 1e-16
Identities = 107/408 (26%), Positives = 159/408 (38%), Gaps = 128/408 (31%)
Query: 74 IGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQEN-GEILVGAPAKRQAVTNPK 132
IGIDLGT N+ V + + V+ +E PSV+A G+IL AV
Sbjct: 1 IGIDLGTANTLVYV--KGKGIVL--NE-----PSVVAIDTKTGKIL--------AVGE-- 41
Query: 133 NTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKM 192
AK ++GR P I EV+R +
Sbjct: 42 ----EAKEMLGR-----------------------------------TPGNI--EVIRPL 60
Query: 193 KKTA-EDYLGGEITEA--------------------VITVPAYFNDAQRQATKDAGRIAG 231
K D+ E TEA VI VP+ + +R+A DA AG
Sbjct: 61 KDGVIADF---EATEAMLRYFIKKVKGRSLFFRPRVVICVPSGITEVERRAVIDAALHAG 117
Query: 232 L-EVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLS 290
EV +I EP AAA+ GLD + N+VV D+GGGT ++++I + + K V
Sbjct: 118 AREV-YLIEEPLAAAIGAGLDIF-EPKGNMVV-DIGGGTTEIAVISLGGIVVSKSIRV-- 172
Query: 291 TNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTE 350
GG+DFD+ II Y+ ++N + G + +AE KIE+ S+ +
Sbjct: 173 -------GGDDFDEAIIRYVRRKYNLLIG-------------ERTAEEIKIEIGSAYPLD 212
Query: 351 INEPYIA----MSNGAPVHLNL--KITRAKLELLVD---ELITRTIEPCRIAIKDAGIKV 401
E + G P + + + R L+ +D E I +E +
Sbjct: 213 EEETMEVKGRDLVTGLPRTVEVTSEEVREALKEPLDEIVEAIKSVLEKTPPEL------A 266
Query: 402 SDI--NDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAI 447
+DI I+L GG + + E + E G R +P VA GA
Sbjct: 267 ADILDRGIVLTGGGALLRGLDELISEETGLPVRVAEDPLTCVAKGAGK 314
>gnl|CDD|237564 PRK13930, PRK13930, rod shape-determining protein MreB;
Provisional.
Length = 335
Score = 71.3 bits (176), Expect = 4e-13
Identities = 96/401 (23%), Positives = 157/401 (39%), Gaps = 102/401 (25%)
Query: 68 RIMSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAY-QENGEIL-VGAPAKR 125
SK IGIDLGT N+ V + + K I +E PSV+A + G++L VG
Sbjct: 5 GFFSKDIGIDLGTANTLVYV----KGKGIVLNE-----PSVVAIDTKTGKVLAVGE---- 51
Query: 126 QAVTNPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKK---LAPP 182
AK ++GR P I ++R K +A
Sbjct: 52 -----------EAKEMLGR-------------TPGNIE---------AIRPLKDGVIADF 78
Query: 183 QISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPT 242
+ + +LR K A VI VP+ + +R+A ++A AG +I EP
Sbjct: 79 EATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAAEHAGAREVYLIEEPM 138
Query: 243 AAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDF 302
AAA+ GL + + N+VV D+GGGT +V++I + + V S + + G++
Sbjct: 139 AAAIGAGLPVT-EPVGNMVV-DIGGGTTEVAVISLGGI-------VYSES--IRVAGDEM 187
Query: 303 DQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIA----M 358
D+ I+ Y+ ++N + G +AE KIE+ S+ + E +
Sbjct: 188 DEAIVQYVRRKYNLLIGER-------------TAEEIKIEIGSAYPLDEEESMEVRGRDL 234
Query: 359 SNGAPVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIK----------VSDIND-- 406
G P + + E + + I +A +K +DI D
Sbjct: 235 VTGLPKTIEIS----------SEEVREALAEPLQQIVEA-VKSVLEKTPPELAADIIDRG 283
Query: 407 IILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAI 447
I+L GG + + + + E G +P VA G
Sbjct: 284 IVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGK 324
>gnl|CDD|115385 pfam06723, MreB_Mbl, MreB/Mbl protein. This family consists of
bacterial MreB and Mbl proteins as well as two related
archaeal sequences. MreB is known to be a rod
shape-determining protein in bacteria and goes to make
up the bacterial cytoskeleton. Genes coding for MreB/Mbl
are only found in elongated bacteria, not in coccoid
forms. It has been speculated that constituents of the
eukaryotic cytoskeleton (tubulin, actin) may have
evolved from prokaryotic precursor proteins closely
related to today's bacterial proteins FtsZ and MreB/Mbl.
Length = 327
Score = 66.4 bits (163), Expect = 1e-11
Identities = 101/394 (25%), Positives = 160/394 (40%), Gaps = 94/394 (23%)
Query: 71 SKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAY-QENGEIL-VGAPAKRQAV 128
SK IGIDLGT N+ V ++G K I +E PSV+A + ++L VG AK+
Sbjct: 1 SKDIGIDLGTANTLV-YVKG---KGIVLNE-----PSVVAINTKTKKVLAVGNEAKKMLG 51
Query: 129 TNPKNTIYAAKRLIGRKFNEKEVQKDI----SLMPYKIVKADNGDAWISVRGKKLAPPQI 184
P N I A + L + V D +++ Y I K + R
Sbjct: 52 RTPGN-IVAVRPL------KDGVIADFEVTEAMLKYFIKKVHGRRSLSKPR--------- 95
Query: 185 SAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAA 244
VI VP+ + +R+A K+A + AG +I EP AA
Sbjct: 96 ----------------------VVICVPSGITEVERRAVKEAAKNAGAREVFLIEEPMAA 133
Query: 245 ALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQ 304
A+ GL + N+VV D+GGGT +V++I + + V S + G++ D+
Sbjct: 134 AIGAGLP-VEEPTGNMVV-DIGGGTTEVAVISLGGI-------VTSKSVRV--AGDEMDE 182
Query: 305 RIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIA----MSN 360
II YI ++N + G +AER KIE+ S+ TE E +
Sbjct: 183 AIIKYIRKKYNLLIGE-------------RTAERIKIEIGSAYPTEEEEKMEIRGRDLVT 229
Query: 361 GAPVHLNLK---ITRAKLELL--VDELITRTIEPCRIAIKDAGIKVSDIND--IILVGGM 413
G P + + + A E + + E + +E + +DI D I+L GG
Sbjct: 230 GLPKTIEISSEEVREALKEPVSAIVEAVKEVLEKTPPEL------AADIVDRGIVLTGGG 283
Query: 414 TRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAI 447
+ + + + + G +P VA+G
Sbjct: 284 ALLRGLDKLLSDETGLPVHIAEDPLTCVALGTGK 317
>gnl|CDD|224003 COG1077, MreB, Actin-like ATPase involved in cell morphogenesis
[Cell division and chromosome partitioning].
Length = 342
Score = 65.3 bits (160), Expect = 4e-11
Identities = 88/368 (23%), Positives = 150/368 (40%), Gaps = 99/368 (26%)
Query: 67 RRIMSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQ 126
R S IGIDLGT N+ V + K I +E PSV+A + G+
Sbjct: 2 RGYFSNDIGIDLGTANTLVYVKG----KGIVLNE-----PSVVAIESEGKT--------- 43
Query: 127 AVTNPKNTIYA----AKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKK---L 179
+ A AK+++GR P IV ++R K +
Sbjct: 44 ------KVVLAVGEEAKQMLGRT-------------PGNIV---------AIRPMKDGVI 75
Query: 180 APPQISAEVLRK-MKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRII 238
A +++ +L+ +KK ++ VI VP+ D +R+A K+A AG +I
Sbjct: 76 ADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAAESAGAREVYLI 135
Query: 239 NEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTF-L 297
EP AAA+ GL + + +V D+GGGT +V++I + + + + +
Sbjct: 136 EEPMAAAIGAGLP-IMEPTGS-MVVDIGGGTTEVAVISLGGI----------VSSSSVRV 183
Query: 298 GGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIA 357
GG+ D+ II Y+ ++N + G +AE+ KIE+ S+ E +E
Sbjct: 184 GGDKMDEAIIVYVRKKYNLLIGE-------------RTAEKIKIEIGSAYPEEEDEELEM 230
Query: 358 ------MSNGAP--VHLNLKITRAKLELLVDELIT---RTIEPCRIAIKDAGIKVSDIND 406
+ G P + +N + LE ++ ++ +E +DI +
Sbjct: 231 EVRGRDLVTGLPKTITINSEEIAEALEEPLNGIVEAIRLVLEKT------PPELAADIVE 284
Query: 407 --IILVGG 412
I+L GG
Sbjct: 285 RGIVLTGG 292
>gnl|CDD|213718 TIGR02529, EutJ, ethanolamine utilization protein EutJ family
protein.
Length = 239
Score = 63.2 bits (154), Expect = 5e-11
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 185 SAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAA 244
+ E++R++K T E LG E+T A +P + + + AG+EV +++EPTAA
Sbjct: 42 AVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAA 101
Query: 245 ALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADV 280
A + N V D+GGGT +SI++ V
Sbjct: 102 AAVLQIK-------NGAVVDVGGGTTGISILKKGKV 130
>gnl|CDD|184403 PRK13929, PRK13929, rod-share determining protein MreBH;
Provisional.
Length = 335
Score = 63.8 bits (155), Expect = 1e-10
Identities = 95/382 (24%), Positives = 163/382 (42%), Gaps = 80/382 (20%)
Query: 74 IGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQ-ENGEIL-VGAPAKRQAVTNP 131
IGIDLGT N I+ S+ K I +E PSV+A E +L +G
Sbjct: 7 IGIDLGTAN----ILVYSKNKGIILNE-----PSVVAVDTETKAVLAIGT---------- 47
Query: 132 KNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRK 191
AK +IG+ P KIV A ++ +A ++ ++L++
Sbjct: 48 -----EAKNMIGKT-------------PGKIV------AVRPMKDGVIADYDMTTDLLKQ 83
Query: 192 MKKTAEDYLGGEITE--AVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
+ K A +G + V+ P+ +R+A DA + G + +I EP AAA+ G
Sbjct: 84 IMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEEPVAAAI--G 141
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
D VV D+GGGT +V+II V+S + +GG+ D+ I+ +
Sbjct: 142 ADLPVDEPVANVVVDIGGGTTEVAIISFGG--------VVSCH-SIRIGGDQLDEDIVSF 192
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIA----MSNGAPVH 365
+ ++N + G + +AE+ K+E+ + E + G P
Sbjct: 193 VRKKYNLLIG-------------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKT 239
Query: 366 LNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVS-DIND--IILVGGMTRMPKVQEK 422
+ L+ +++ + E + +E R ++D ++S DI D +IL GG + ++E
Sbjct: 240 ITLESK--EIQGAMRESLLHILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEW 297
Query: 423 VKEFFGKDPRRDINPDEAVAVG 444
+ E NP E+VA+G
Sbjct: 298 LSEEIVVPVHVAANPLESVAIG 319
>gnl|CDD|237904 PRK15080, PRK15080, ethanolamine utilization protein EutJ;
Provisional.
Length = 267
Score = 62.2 bits (152), Expect = 2e-10
Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 11/99 (11%)
Query: 185 SAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAA 244
+ ++R++K T E+ LG E+T A +P ++ +A + AGLEV +++EPTAA
Sbjct: 69 AVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAA 128
Query: 245 ALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGE 283
A G+D N V D+GGGT +SI++ DG+
Sbjct: 129 AAVLGID-------NGAVVDIGGGTTGISILK----DGK 156
>gnl|CDD|227157 COG4820, EutJ, Ethanolamine utilization protein, possible
chaperonin [Amino acid transport and metabolism].
Length = 277
Score = 62.6 bits (152), Expect = 2e-10
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 185 SAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAA 244
+ E++R++K T E LG T A +P + + + AGLEV +++EPTAA
Sbjct: 74 AVEIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAA 133
Query: 245 ALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADV 280
A LD + V D+GGGT +SI++ V
Sbjct: 134 ADVLQLD-------DGGVVDIGGGTTGISIVKKGKV 162
>gnl|CDD|129982 TIGR00904, mreB, cell shape determining protein, MreB/Mrl family.
MreB (mecillinam resistance) in E. coli (also called
envB) and the paralogous pair MreB and Mrl of Bacillus
subtilis have all been shown to help determine cell
shape. This protein is present in a wide variety of
bacteria, including spirochetes, but is missing from the
Mycoplasmas and from Gram-positive cocci. Most completed
bacterial genomes have a single member of this family.
In some species it is an essential gene. A close homolog
is found in the Archaeon Methanobacterium
thermoautotrophicum, and a more distant homolog in
Archaeoglobus fulgidus. The family is related to cell
division protein FtsA and heat shock protein DnaK [Cell
envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 333
Score = 60.5 bits (147), Expect = 1e-09
Identities = 72/277 (25%), Positives = 117/277 (42%), Gaps = 71/277 (25%)
Query: 74 IGIDLGTTNSCVSI----IEGSQPKVIE-NSEGARTTPSVIAYQENGEILVGAPAKRQAV 128
IGIDLGT N+ V + I ++P V+ ++ T S++A VG AK
Sbjct: 5 IGIDLGTANTLVYVKGRGIVLNEPSVVAIRTDRDAKTKSILA--------VGHEAKEMLG 56
Query: 129 TNPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEV 188
P N I A + + + EV + ++ Y I + + ++ P+I
Sbjct: 57 KTPGN-IVAIRPMKDGVIADFEVTE--KMIKYFIKQVHSRKSFFK--------PRI---- 101
Query: 189 LRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAF 248
VI VP+ +R+A K++ AG +I EP AAA+
Sbjct: 102 -------------------VICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGA 142
Query: 249 GLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIID 308
GL + +V D+GGGT +V++I + + + V GG++FD+ II+
Sbjct: 143 GLPVEEPTGSMVV--DIGGGTTEVAVISLGGIVVSRSIRV---------GGDEFDEAIIN 191
Query: 309 YILDEFNKINGIDLRKDSIALQRIKASAERAKIELSS 345
YI +N + G + +AER KIE+ S
Sbjct: 192 YIRRTYNLLIG-------------EQTAERIKIEIGS 215
>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of
the sugar kinase/HSP70/actin superfamily. This
superfamily includes the actin family, the HSP70 family
of molecular chaperones and nucleotide exchange factors,
the ROK (repressor, ORF, kinase) family, the hexokinase
family, the FGGY family (which includes glycerol kinase
and similar carbohydrate kinases such as rhamnulokinase
and xylulokinase), the exopolyphosphatase/guanosine
pentaphosphate phosphohydrolase/nucleoside triphosphate
diphosphohydrolase family, propionate kinase/acetate
kinase family, glycerol dehydratase reactivase,
2-hydroxyglutaryl-CoA dehydratase component A,
N-acetylglucosamine kinase, butyrate kinase 2,
Escherichia coli YeaZ and similar glycoproteases, the
cell shape-determining protein MreB, the plasmid DNA
segregation factor ParM, cell cycle proteins FtsA, Pili
assembly protein PilM, ethanolamine utilization protein
EutJ, and similar proteins. The nucleotide-binding site
residues are conserved; the nucleotide sits in a deep
cleft formed between the two lobes of the
nucleotide-binding domain (NBD). Substrate binding to
superfamily members is associated with closure of this
catalytic site cleft. The functional activities of
several members of the superfamily, including
hexokinases, actin, and HSP70s, are modulated by
allosteric effectors, which may act on the cleft
closure.
Length = 185
Score = 56.4 bits (136), Expect = 6e-09
Identities = 33/113 (29%), Positives = 46/113 (40%), Gaps = 12/113 (10%)
Query: 174 VRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQAT---------- 223
R + E LR++ K A L EI IT P R+
Sbjct: 32 GRPGAVTDLDELEEALRELLKEALRQLKSEIDAVGITEPGGVPKENREVIILPNLLLIPL 91
Query: 224 KDAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIE 276
A G ++N+ AAALA GL GK + ++V DLG GT ++I+E
Sbjct: 92 ALALEDLGGVPVAVVNDAVAAALAEGLF--GKEEDTVLVVDLGTGTTGIAIVE 142
>gnl|CDD|237563 PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional.
Length = 336
Score = 58.4 bits (142), Expect = 6e-09
Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 11/108 (10%)
Query: 208 VITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGG 267
+I +P +++A ++A AG + +I EP AAA+ GLD S S N+VV D+GG
Sbjct: 99 MICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDISQPSG-NMVV-DIGG 156
Query: 268 GTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFN 315
GT D++++ + + V S++ + G+ FD+ II YI ++
Sbjct: 157 GTTDIAVLSLGGI-------VTSSS--IKVAGDKFDEAIIRYIRKKYK 195
>gnl|CDD|237562 PRK13927, PRK13927, rod shape-determining protein MreB;
Provisional.
Length = 334
Score = 57.4 bits (140), Expect = 1e-08
Identities = 79/302 (26%), Positives = 122/302 (40%), Gaps = 112/302 (37%)
Query: 67 RRIMSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAY-QENGEIL-VGAPAK 124
+ S +GIDLGT N+ V ++G K I +E PSV+A + ++L VG
Sbjct: 1 FGLFSNDLGIDLGTANTLV-YVKG---KGIVLNE-----PSVVAIRTDTKKVLAVGE--- 48
Query: 125 RQAVTNPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQI 184
AK+++GR P I
Sbjct: 49 ------------EAKQMLGR-----------------------------------TPGNI 61
Query: 185 SAEVLRKMK-------KTAEDYLGGEITEA----------VITVPAYFNDAQRQATKDAG 227
A +R MK E L I + VI VP+ + +R+A +++
Sbjct: 62 VA--IRPMKDGVIADFDVTEKMLKYFIKKVHKNFRPSPRVVICVPSGITEVERRAVRESA 119
Query: 228 RIAGL-EVKRIINEPTAAALAFGLD---KSGKSDRNIVVYDLGGGTFDVSIIEIADVDGE 283
AG EV +I EP AAA+ GL +G ++VV D+GGGT +V++I + +
Sbjct: 120 LGAGAREV-YLIEEPMAAAIGAGLPVTEPTG----SMVV-DIGGGTTEVAVISLGGI--- 170
Query: 284 KQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIEL 343
V S + +GG+ FD+ II+Y+ +N + G +AER KIE+
Sbjct: 171 ----VYSKS--VRVGGDKFDEAIINYVRRNYNLLIGE-------------RTAERIKIEI 211
Query: 344 SS 345
S
Sbjct: 212 GS 213
>gnl|CDD|236954 PRK11678, PRK11678, putative chaperone; Provisional.
Length = 450
Score = 52.6 bits (127), Expect = 7e-07
Identities = 60/240 (25%), Positives = 100/240 (41%), Gaps = 52/240 (21%)
Query: 74 IGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKN 133
IG D GT N V+++ +P+++ + PS + E + + V
Sbjct: 3 IGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTL-CAPTREAVSEWLYRHLDVPA--- 58
Query: 134 TIYAAKR--LIGR--KFNEKEVQKDISLMPYKI------VKA---DNGDAWISVRGKK-- 178
Y +R L+ R ++N +E DI + + + D + + V+ K
Sbjct: 59 --YDDERQALLRRAIRYNREE---DIDVTAQSVFFGLAALAQYLEDPEEVYF-VKSPKSF 112
Query: 179 -----LAPPQIS------AEVLRKMKKTAEDYLGGEITEAVITVPAYFN-----DAQRQA 222
L P Q++ ++ +K+ AE L IT+AVI P F +A RQA
Sbjct: 113 LGASGLKPQQVALFEDLVCAMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQA 172
Query: 223 ----TKDAGRIAGLEVKRIINEPTAAALAF--GLDKSGKSDRNIVVYDLGGGTFDVSIIE 276
+ A R AG + EP AA L F L + ++ ++V D+GGGT D S++
Sbjct: 173 EGILERAAKR-AGFKDVEFQFEPVAAGLDFEATLTE----EKRVLVVDIGGGTTDCSMLL 227
Score = 49.1 bits (118), Expect = 8e-06
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 19/124 (15%)
Query: 331 RIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEPC 390
R+ SAE AKI LS +T + +I S+G L +I++ LE + + + R +E
Sbjct: 336 RLVRSAEEAKIALSDQAETRASLDFI--SDG----LATEISQQGLEEAISQPLARILELV 389
Query: 391 RIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGS 450
++A+ A +K D+ I L GG R P ++ + + P + G GS
Sbjct: 390 QLALDQAQVK-PDV--IYLTGGSARSPLIRAALAQQL---------PGIPIVGGDDF-GS 436
Query: 451 VLSG 454
V +G
Sbjct: 437 VTAG 440
>gnl|CDD|223918 COG0849, ftsA, Cell division ATPase FtsA [Cell division and
chromosome partitioning].
Length = 418
Score = 47.6 bits (114), Expect = 2e-05
Identities = 56/271 (20%), Positives = 110/271 (40%), Gaps = 56/271 (20%)
Query: 230 AGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVL 289
AGL+V I+ EP A+ALA L + K + + + D+GGGT D++I +
Sbjct: 177 AGLKVDNIVLEPLASALAV-LTEDEK-ELGVALIDIGGGTTDIAIYK------------- 221
Query: 290 STNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKD-SIALQRIKASAERAKIELSS--- 345
R I + G + KD + L+ AER KI+ S
Sbjct: 222 ---NGAL--------RYTGVI-----PVGGDHVTKDIAKGLKTPFEEAERIKIKYGSALI 265
Query: 346 ---SKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVS 402
+ I P + ++TR++L +++ + +E + ++ +G+
Sbjct: 266 SLADDEETIEVPSV---GSDIPR---QVTRSELSEIIEARVEEILELVKAELRKSGLPNH 319
Query: 403 DINDIILVGGMTRMPKVQEKVKEFFGKDPRRDI------------NPDEAVAVGAAIQGS 450
++L GG ++P + E + FG+ R + NP + AVG + G+
Sbjct: 320 LPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIARNPAFSTAVGLLLYGA 379
Query: 451 VLSGDRKDLLLLDVTPLSLGIETMGGIMTKM 481
+++ + ++ + +E G++ K+
Sbjct: 380 LMTSEESEVEEEPKGEKIIPLEEKDGLIKKL 410
>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational
modification, protein turnover, chaperones].
Length = 237
Score = 46.0 bits (108), Expect = 4e-05
Identities = 45/268 (16%), Positives = 71/268 (26%), Gaps = 66/268 (24%)
Query: 578 TEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRII 637
+ EEIKK K + RN G+ + K +I EAYE+LSD E+R
Sbjct: 19 SLEEIKK---------AYRKLALKYHPDRNPGDPKVAEEKFK-EINEAYEILSDPERRAE 68
Query: 638 YDQY-GHAGIDPNMSGSSASAEASNFADAFGDIFGDIFGSNRDRDNN------NKGSNGK 690
YD+ SA+ G N+ ++G +G
Sbjct: 69 YDKIGADNYFPGKSYRESAAFPIEGSLQLTGLYEEWRGKRNKTERKASLADLLSRGLSGL 128
Query: 691 DLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQG 750
+L G + + + + +
Sbjct: 129 AAALSLFADEAALRSGSLRRRDL---------------AANLADNFEEALAGVKKAVARL 173
Query: 751 FFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPG 810
K L+ I AG +R G +
Sbjct: 174 --------------------------------LGKALKSTIKAGALEGKALRLKGLLKSA 201
Query: 811 LNGGSNGNLYIEIHIKPHKVFERDGDDL 838
G+ G ++ K H F +GDD
Sbjct: 202 R--GALGKARLKELSKRHPPFALEGDDK 227
>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains) are
associated with hsp70 heat-shock system and it is
thought that this domain mediates the interaction.
DnaJ-domain is therefore part of a chaperone (protein
folding) system. The T-antigens, although not in Prosite
are confirmed as DnaJ containing domains from
literature.
Length = 63
Score = 41.4 bits (98), Expect = 6e-05
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 19/66 (28%)
Query: 578 TEEEIKKMVQSAEANAEEDKRLRELAES----RNHGESLIHSTKKSLKIKEAYEVLSDSE 633
++EEIKK R+LA +N G+ + +K +I EAYEVLSD E
Sbjct: 13 SDEEIKK-------------AYRKLALKYHPDKNPGDP--AAEEKFKEINEAYEVLSDPE 57
Query: 634 KRIIYD 639
KR IYD
Sbjct: 58 KRAIYD 63
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 41.7 bits (97), Expect = 0.002
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 621 KIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASAEASNF-ADAFGDIFGDIFGS--- 676
+I EA +VLS+ +KR YD+YGH G+D + +F AD F F +I S
Sbjct: 46 EINEANDVLSNPKKRANYDKYGHDGVD--------REDDFDFQADVFNSFFEEINKSGEF 97
Query: 677 -NRDRDNNNKGSNGKDLRY 694
N D+ K +
Sbjct: 98 DNITDDDTPSKKKKKKKKK 116
Score = 34.8 bits (79), Expect = 0.29
Identities = 33/143 (23%), Positives = 53/143 (37%), Gaps = 11/143 (7%)
Query: 786 TLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPIS 845
TLE+++P + N+ G G G G+L + + P F+ D LH +
Sbjct: 698 TLEIQLPITSQLNISAIFKGFGH--DFGNGCGDLKVVFKVIPSNFFQIKNDGLHVAALVD 755
Query: 846 FSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHV----- 900
A GG I+ N IP G + + G+ + G L H+
Sbjct: 756 PLVAYNGGIIDVFGPNKLFNVRIPGGIKVNDQVIFKDLGLTKTKYD-KGSLIVHLYYSSV 814
Query: 901 ---TIETPVQLTEYQKKLLRSLE 920
T VQ+ ++ K LR +
Sbjct: 815 MKKNDRTNVQVQQFNKLALREYK 837
>gnl|CDD|199910 cd10748, anti-TRAP, anti-TRAP (AT) protein specific to Bacilli. In
Bacillus subtilis and related bacteria, AT binds to the
TRAP protein, (tryptophan-activated trp RNA-binding
attenuation protein), effectively disrupting interaction
of TRAP with mRNAs. Upon binding of tryptophan, TRAP
(which forms a complex of 11 identical subunits)
interacts with a specific location in the leader RNA and
blocks translation of the tryptophan biosynthetic
operon. AT, in turn, recognizes the tryptophan-activated
TRAP complex and prevents RNA binding. AT is expressed
in response to high levels of uncharged tryptophan tRNA.
AT contains a zinc-binding motif that closely resembles
the zinc-binding motifs in the zinc-finger region of
DnaJ/Hsp40. AT has been shown to form homo-dodecameric
assemblies, and can actually do that in two different
relative orientations, resulting in two different
dodecamers. Recent data suggest that the trimeric form
of AT may be the biologically relevant active complex.
Length = 52
Score = 36.1 bits (83), Expect = 0.004
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 754 IQQTCPKCQGAGKVIPHPCLDCNGIGRI 781
++ TCPKC+ AG+ PC C+G G I
Sbjct: 7 LEVTCPKCERAGEEEGTPCPKCSGKGVI 34
>gnl|CDD|233960 TIGR02642, phage_xxxx, uncharacterized phage protein. This
uncharacterized protein is found in prophage regions of
Shewanella oneidensis MR-1, Vibrio vulnificus YJ016,
Yersinia pseudotuberculosis IP 32953, and Aeromonas
hydrophila ATCC7966. It appears to have regions of
sequence similarity to phage lambda antitermination
protein Q [Mobile and extrachromosomal element
functions, Prophage functions].
Length = 186
Score = 37.5 bits (87), Expect = 0.014
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 756 QTCPKCQGAGKVIPHP---CLDCNGIGRIKRN 784
CP+C+G G I C C G GR +
Sbjct: 100 CKCPRCRGTGL-IQRRQRECDTCAGTGRFRPT 130
>gnl|CDD|212669 cd10227, ParM_like, Plasmid segregation protein ParM and similar
proteins. ParM is a plasmid-encoded bacterial homolog
of actin, which polymerizes into filaments similar to
F-actin, and plays a vital role in plasmid segregation.
ParM filaments segregate plasmids paired at midcell into
the individual daughter cells. This subfamily also
contains Thermoplasma acidophilum Ta0583, an active
ATPase at physiological temperatures, which has a
propensity to form filaments.
Length = 312
Score = 37.8 bits (88), Expect = 0.019
Identities = 46/210 (21%), Positives = 82/210 (39%), Gaps = 45/210 (21%)
Query: 236 RIINEPTAAALAFGLDKSG-KSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGD 294
++ E A LD+ G D+ ++V D+GGGT DV + + + + ++
Sbjct: 144 KVFPEGVGALFDLLLDEGGLLKDKKVLVIDIGGGTTDVVVFD--------NGKPVESSSG 195
Query: 295 TFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEP 354
+ G + + I E NK GIDL D + + R + K+ +I E
Sbjct: 196 SLELG---VSDLYEAIAKELNKEYGIDL-SDEEIEEIL-----RNGKIKNYGKEEDITEI 246
Query: 355 YIAMSNGAPVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMT 414
E ++++ +K+ +SD++ +ILVGG
Sbjct: 247 IEEA----------------AEEYAEKILNE--------LKEFL-GLSDVDKVILVGGGA 281
Query: 415 RMPKVQEKVKEFFGKDPRRDINPDEAVAVG 444
+ K E +KE F ++ +P A A G
Sbjct: 282 ILLK--EYLKELFPENVVLVDDPQFANARG 309
>gnl|CDD|224032 COG1107, COG1107, Archaea-specific RecJ-like exonuclease, contains
DnaJ-type Zn finger domain [DNA replication,
recombination, and repair].
Length = 715
Score = 37.4 bits (87), Expect = 0.040
Identities = 22/87 (25%), Positives = 30/87 (34%), Gaps = 13/87 (14%)
Query: 718 ICKSCYGNGAK----------KGTSPISCFTCSGQGQVRMQQ--GFFSIQQTCPKCQGAG 765
C C G G GT F G + + F S + CPKC+G G
Sbjct: 4 KCPECGGKGKIVVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKG 63
Query: 766 KV-IPHPCLDCNGIGRIKRNKTLEVKI 791
V + C +C G G++ I
Sbjct: 64 TVTVYDTCPECGGTGKVLTCDICGDII 90
>gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase. This model describes
D-xylulose kinases, a subfamily of the FGGY family of
carbohydrate kinases. The member from Klebsiella
pneumoniae, designated DalK (see PMID:9324246), was
annotated erroneously in GenBank as D-arabinitol kinase
but is authentic D-xylulose kinase. D-xylulose kinase
(XylB) generally is found with xylose isomerase (XylA)
and acts in xylose utilization [Energy metabolism,
Sugars].
Length = 481
Score = 35.4 bits (82), Expect = 0.14
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 393 AIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVL 452
+++AG I I L+GG + P ++ + + FG P +E A+GAAI +
Sbjct: 382 ILREAGGI--PIQSIRLIGGGAKSPAWRQMLADIFGT-PVDVPEGEEGPALGAAILAAWA 438
Query: 453 SG 454
G
Sbjct: 439 LG 440
>gnl|CDD|198375 cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of
the FGGY family of carbohydrate kinases. This subgroup
is composed of D-xylulose kinases (XK, also known as
xylulokinase; EC 2.7.1.17) from bacteria and eukaryota.
They share high sequence similarity with Escherichia
coli xylulokinase (EcXK), which catalyzes the
rate-limiting step in the ATP-dependent phosphorylation
of D-xylulose to produce D-xylulose 5-phosphate (X5P)
and ADP. Some uncharacterized sequences are also
included in this subfamily. EcXK exists as a dimer. Each
monomer consists of two large domains separated by an
open cleft that forms an active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. The presence of Mg2+ or Mn2+ might be
required for catalytic activity. Members of this
subgroup belong to the FGGY family of carbohydrate
kinases.
Length = 487
Score = 35.4 bits (82), Expect = 0.14
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 371 TRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKD 430
TRA L E T + ++ G+K +I L+GG + P ++ + + +
Sbjct: 365 TRANLARAAVEGATFGLRYGLDLLRALGLK---STEIRLIGGGAKSPAWRQIIADIMNAE 421
Query: 431 PRRDINPDEAVAVGAAIQGS-VLSG-DRKDLLLLDVT 465
+EA A+GAAIQ + L+G D D+ L ++
Sbjct: 422 VVVPDT-EEAAALGAAIQAAWCLTGEDGADVALAELC 457
>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional.
Length = 135
Score = 33.5 bits (77), Expect = 0.15
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 2 KVKKKIKQSKSKVKKKIKQSKVKKKIKQSKVKKKIKQ 38
K+ K++ + K+K KK+ K+ K KKK K SK K K+
Sbjct: 99 KIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 34.5 bits (80), Expect = 0.23
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 2 KVKKKIKQSKSKVKKKIKQSKVKKKIKQSKVKKKIKQP 39
KV K + K K K+K KVKK+ + +K K ++P
Sbjct: 394 KVLAKRAEKKEKEKEK---PKVKKRHRDTKNIGKRRKP 428
Score = 31.5 bits (72), Expect = 2.6
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 2 KVKKKIKQSKSKVKKKIKQSKVKKKIKQSKVKKK 35
K K K+ +K +K ++ K K K+K+ K
Sbjct: 387 KTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTK 420
Score = 29.9 bits (68), Expect = 7.9
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 1 SKVKKKIKQSKSKVKKKIKQSKVKKKIKQSKVKKKIK 37
S+ K K K+ K+ K K+K K K + K
Sbjct: 384 SEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTK 420
Score = 29.5 bits (67), Expect = 8.7
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 2 KVKKKIKQSKSKVKKKIKQSKVKKKIKQSKVKKKIK 37
K KK+ +K KK+ ++ K K K + K K
Sbjct: 390 KPSKKVL-AKRAEKKEKEKEKPKVKKRHRDTKNIGK 424
Score = 29.5 bits (67), Expect = 9.2
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 3 VKKKIKQSKSKVKKKIKQSKVKKKIK-QSKVKKKIKQ 38
+KK + KV K + K K+K K + K + + +
Sbjct: 384 SEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTK 420
>gnl|CDD|173561 PTZ00368, PTZ00368, universal minicircle sequence binding protein
(UMSBP); Provisional.
Length = 148
Score = 33.2 bits (76), Expect = 0.25
Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 10/68 (14%)
Query: 727 AKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKT 786
A G+ P SC+ C G I + CP G C +C G G I R+
Sbjct: 71 APPGSGPRSCYNCGQTGH---------ISRECPNRAKGG-AARRACYNCGGEGHISRDCP 120
Query: 787 LEVKIPAG 794
K P G
Sbjct: 121 NAGKRPGG 128
>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain.
Length = 60
Score = 30.7 bits (70), Expect = 0.32
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 588 SAEANAEE-DKRLRELAESRNH----GESLIHSTKKSLKIKEAYEVLSDSEK 634
+A+ +E K R+LA + H + +K +I EAYEVLSD EK
Sbjct: 10 PRDASLDEIKKAYRKLA-LKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60
>gnl|CDD|178709 PLN03165, PLN03165, chaperone protein dnaJ-related; Provisional.
Length = 111
Score = 31.3 bits (71), Expect = 0.61
Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 20/66 (30%)
Query: 725 NGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVI---------PHPCLDC 775
+ A K + CF CSG G Q C C G+G V C++C
Sbjct: 33 DNAAKRENTQPCFPCSGTG-----------AQVCRFCVGSGNVTVELGGGEKEVSKCINC 81
Query: 776 NGIGRI 781
+G G +
Sbjct: 82 DGAGSL 87
>gnl|CDD|198352 cd07774, FGGY_1, uncharacterized subgroup; belongs to the FGGY
family of carbohydrate kinases. This subfamily is
composed of uncharacterized carbohydrate kinases. They
are sequence homologous to bacterial glycerol kinase and
have been classified as members of the FGGY family of
carbohydrate kinases. The monomers of FGGY proteins
contain two large domains, which are separated by a deep
cleft that forms the active site. This model includes
both the N-terminal domain, which adopts a ribonuclease
H-like fold, and the structurally related C-terminal
domain.
Length = 430
Score = 33.1 bits (76), Expect = 0.62
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 404 INDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAI 447
+ I+++GG +R + GK ++ E VA+GAA+
Sbjct: 386 GSRIVVIGGGSRNKLWLQLKASVLGKPIEV-LDEAELVALGAAL 428
>gnl|CDD|212686 cd11736, HSPA12B_like_NBD, Nucleotide-binding domain of HSPA12B and
similar proteins. Human HSPA12B (also known as 70-kDa
heat shock protein-12B, chromosome 20 open reading frame
60/C20orf60, dJ1009E24.2; the gene encoding HSPA12B maps
to 20p13) belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly, and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). No
co-chaperones have yet been identified for HSPA12B.
HSPA12B is predominantly expressed in endothelial cells,
is required for angiogenesis, and may interact with
known angiogenesis mediators. HSPA12B may be important
for host defense in microglia-mediated immune response.
HSPA12B expression is up-regulated in lipopolysaccharide
(LPS)-induced inflammatory response in the spinal cord,
and mostly located in active microglia; this induced
expression may be regulated by activation of MAPK-p38,
ERK1/2 and SAPK/JNK signaling pathways. Overexpression
of HSPA12B also protects against LPS-induced cardiac
dysfunction and involves the preserved activation of the
PI3K/Akt signaling pathway.
Length = 468
Score = 33.0 bits (75), Expect = 0.72
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 14/88 (15%)
Query: 173 SVRGKKLAPPQISAEVLR--------KMKKTAEDYLGGEITEAVITVPAYFNDAQRQATK 224
+V GK++ ++ A LR ++K + L V+TVPA + +Q +
Sbjct: 101 AVNGKRVQALEVFAHALRFFREHALQELKDQSPSLLEKNEVRWVLTVPAIWKQPAKQFMR 160
Query: 225 DAGRIAGL------EVKRIINEPTAAAL 246
+A +AGL E I EP AA++
Sbjct: 161 EAAYLAGLVSPENPEQLLIALEPEAASI 188
>gnl|CDD|217417 pfam03194, LUC7, LUC7 N_terminus. This family contains the N
terminal region of several LUC7 protein homologues and
only contains eukaryotic proteins. LUC7 has been shown
to be a U1 snRNA associated protein with a role in
splice site recognition. The family also contains human
and mouse LUC7 like (LUC7L) proteins and human cisplatin
resistance-associated overexpressed protein (CROP).
Length = 252
Score = 32.8 bits (75), Expect = 0.76
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 22/81 (27%)
Query: 578 TEEEIKKMVQSAEANAEEDK------------RLREL-------AESRNHGESLIHSTKK 618
+EEI K++ AEA EE K L+ E RN S + ++
Sbjct: 128 LDEEIGKLLAEAEALGEEGKVDEAMKLMKEVEELKAKKKELEDSDEVRNAAPSSAQAQQQ 187
Query: 619 SLKIKE---AYEVLSDSEKRI 636
L++ E AY D+++R+
Sbjct: 188 KLRVCEVCGAYLSRLDNDRRL 208
>gnl|CDD|216816 pfam01968, Hydantoinase_A, Hydantoinase/oxoprolinase. This family
includes the enzymes hydantoinase and oxoprolinase
EC:3.5.2.9. Both reactions involve the hydrolysis of
5-membered rings via hydrolysis of their internal imide
bonds.
Length = 285
Score = 32.6 bits (75), Expect = 0.78
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 20/104 (19%)
Query: 186 AEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLE------VKRIIN 239
A + M++ E + + E I P Y + G + +E V+ I++
Sbjct: 9 AYLAPIMRRYLE-GVEDALKERGIKAPLYV-------MQSDGGLMSIEEARRKPVETILS 60
Query: 240 EPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGE 283
P A + +G +N +V D+GG + DVS+I +DGE
Sbjct: 61 GPAAGVVGAAYTLAG--LKNAIVVDMGGTSTDVSLI----IDGE 98
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 32.8 bits (74), Expect = 1.1
Identities = 12/26 (46%), Positives = 21/26 (80%)
Query: 621 KIKEAYEVLSDSEKRIIYDQYGHAGI 646
KI EAY++L D +K+ +Y+++G+ GI
Sbjct: 617 KINEAYQILGDIDKKKMYNKFGYDGI 642
>gnl|CDD|219352 pfam07258, HCaRG, HCaRG protein. This family consists of several
mammalian HCaRG(hypertension-related, calcium-regulated
gene) proteins. HCaRG is negatively regulated by
extracellular calcium concentration, and its basal mRNA
levels are higher in hypertensive animals. HCaRG is a
nuclear protein potentially involved in the control of
cell proliferation.
Length = 177
Score = 31.5 bits (72), Expect = 1.3
Identities = 18/97 (18%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 295 TFLGGEDFDQRIIDYILDEFNKINGIDLRKD----SIALQRIKASAERAKIELSSSKQTE 350
L + + I + + N +LR+ S++L ++ R +++SSS +
Sbjct: 72 QELEQLGLPEEHAEAISKVWKE-NRKELREALLERSLSLPHLQDLDWRLDVQISSSSLAK 130
Query: 351 INEPYIAM-----SNGAPVHLNLKITRAKLELLVDEL 382
+N P I + + + + +++ +L+ L++EL
Sbjct: 131 VNSPVILLQLKLSNGDSKETVTFELSLEELQELLNEL 167
>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play
crucial roles in protein translation, folding,
unfolding, translocation, and degradation. They act
primarily by stimulating the ATPase activity of Hsp70s,
an important chaperonine family. Hsp40 proteins are
characterized by the presence of a J domain, which
mediates the interaction with Hsp70. They may contain
other domains as well, and the architectures provide a
means of classification.
Length = 55
Score = 28.7 bits (65), Expect = 1.4
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 17/61 (27%)
Query: 574 NSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNH---GESLIHSTKKSLKIKEAYEVLS 630
++EEIKK R+LA + H + +K +I EAYEVLS
Sbjct: 9 PPDASDEEIKK-------------AYRKLAL-KYHPDKNPDDPEAEEKFKEINEAYEVLS 54
Query: 631 D 631
D
Sbjct: 55 D 55
>gnl|CDD|235223 PRK04132, PRK04132, replication factor C small subunit;
Provisional.
Length = 846
Score = 32.1 bits (73), Expect = 1.6
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 14/114 (12%)
Query: 5 KKIKQSKSKVKKKIKQSKVKKKIKQSKVKKKIKQPLICKTLIFELKLNLK-------ILD 57
+++K++ S+ I ++V K+ K+ K I+ I + + + K +LK L
Sbjct: 399 ERLKKALSE-SILIDWNEVAKRRKEIAEKTGIRADRILEYIKGKRKPSLKNYIKIAKALG 457
Query: 58 EDLKRILHARRIMSK------IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTT 105
+L++ + A RI +K IG LGT NS V II S + IE E R
Sbjct: 458 INLEKTIEAMRIFAKKYSSYAEIGRMLGTWNSSVKIILESNTQEIEKLEEIRKI 511
>gnl|CDD|223223 COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta
subunit [Amino acid transport and metabolism / Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 674
Score = 32.0 bits (73), Expect = 2.0
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 253 SGKSDRNIVVYDLGGGTFDVSIIE 276
+G N +V+D+GG + DV++I
Sbjct: 273 TGLKAGNAIVFDMGGTSTDVALII 296
>gnl|CDD|240100 cd04752, Commd4, COMM_Domain containing protein 4. The COMM Domain
is found at the C-terminus of a variety of proteins;
presumably all COMM_Domain containing proteins are
located in the nucleus and the COMM domain plays a role
in protein-protein interactions. Several family members
have been shown to bind and inhibit NF-kappaB.
Length = 174
Score = 30.9 bits (70), Expect = 2.1
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 322 LRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAM-------SNGAPVHLNLKITRAK 374
LR +S+ L R+++ R LSSS+ E+NEP + + G ++ K
Sbjct: 97 LRANSLRLSRLESVDWRVDYILSSSELQEVNEPLVQLRLKVRNADTGEITPHPFSVSADK 156
Query: 375 LELLVDEL 382
+L+ EL
Sbjct: 157 FRVLLAEL 164
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 31.1 bits (71), Expect = 2.9
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 2 KVKKKIKQSKSKVKKKIKQSKVKKKIKQSKVKKKIKQPLICKTLIFELKLNLKILDEDLK 61
K+KK +K+ K + ++ K ++ K + K+K+ + + EL+ LK L E+L+
Sbjct: 352 KIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKLSE------ELEELEEELKELKEELE 405
Query: 62 RILHARRI 69
+ +I
Sbjct: 406 SLYSEGKI 413
>gnl|CDD|143650 cd07934, RHD-n_NFkB2, N-terminal sub-domain of the Rel homology
domain (RHD) of nuclear factor kappa B2 (NF-kappa B2).
Proteins containing the Rel homology domain (RHD) are
metazoan transcription factors. The RHD is composed of
two structural sub-domains; this model characterizes the
N-terminal RHD sub-domain of the NF-kappa B2 family of
transcription factors, a class I member of the NF-kappa
B family. In class I NF-kappa Bs, the RHD domain
co-occurs with C-terminal ankyrin repeats. NF-kappa B2
is commonly referred to as p100 or p52 (proteolytically
processed form). NF-kappa B proteins are part of a
protein complex that acts as a transcription factor,
which is responsible for regulating a host of cellular
responses to a variety of stimuli. This complex tightly
regulates the expression of a large number of genes, and
is involved in processes such as adaptive and innate
immunity, stress response, inflammation, cell adhesion,
proliferation and apoptosis. The cytosolic NF-kappa B
complex is activated via phosphorylation of the
ankyrin-repeat containing inhibitory protein I-kappa B,
which dissociates from the complex and exposes the
nuclear localization signal of the heterodimer (NF-kappa
B and REL). NF-kappa B2 is involved in the alternative
NF-kappa B signaling pathway which is activated by few
agonists and plays an important role in secondary
lymphoid organogenesis, maturation of B-cells, and
adaptive humoral immunity. p100 may also act as an
I-kappa B due to its C-terminal ankyrin repeats.
Length = 185
Score = 30.3 bits (68), Expect = 3.0
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 552 GILHVTAKD-----KKTGKENKITIKANSGLTEEEIKKMVQSAE 590
GILHVT K+ K+ K K+ LTE E +++ Q A+
Sbjct: 100 GILHVTKKNMMEILKEKLKRQKLRNTGPYKLTEAEERELEQEAK 143
>gnl|CDD|212660 cd07776, FGGY_D-XK_euk, eukaryotic D-xylulose kinases; a subfamily
of the FGGY family of carbohydrate kinases. This
subfamily is composed of eukaryotic D-xylulose kinases
(XK, also known as xylulokinase; EC 2.7.1.17), which
catalyze the rate-limiting step in the ATP-dependent
phosphorylation of D-xylulose to produce D-xylulose
5-phosphate (X5P) and ADP. They belong to the FGGY
family of carbohydrate kinases, the monomers of which
contain two large domains, which are separated by a deep
cleft that forms the active site. This model includes
both the N-terminal domain, which adopts a ribonuclease
H-like fold, and the structurally related C-terminal
domain. Members of this subfamily are similar to
bacterial D-XKs, which exist as dimers with active sites
that lie at the interface between two large domains. The
presence of Mg2+ or Mn2+ is required for catalytic
activity.
Length = 480
Score = 31.0 bits (71), Expect = 3.2
Identities = 14/57 (24%), Positives = 22/57 (38%)
Query: 390 CRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAA 446
R + G + II GG +R + + + + FG A A+GAA
Sbjct: 419 KRARAEKLGFGIGPPTRIIATGGASRNKSILQVIADVFGAPVYTIKEESNAAALGAA 475
>gnl|CDD|234882 PRK00976, PRK00976, hypothetical protein; Provisional.
Length = 326
Score = 30.7 bits (70), Expect = 3.3
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 21/115 (18%)
Query: 368 LKITRA--KLELLVDELITRTI---EPCRIAIKD---------AGIKV-SDINDIILVG- 411
+KI +E +EL+ E ++AI A + + + ++++L G
Sbjct: 213 VKIADIYKGVEKTKEELLEAYEKGDEKAKLAIDTLALFVAMEIASLLLLNPEDNVVLAGS 272
Query: 412 -GMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAA-IQGSVLSGDRKDLLLLDV 464
G P V E++KE K + E+ A+G A I + +G +KD+L ++V
Sbjct: 273 VGEMDEPDVSERIKELLDKKVL--VLGKESAAIGLALIARDIFNG-KKDILGIEV 324
>gnl|CDD|217512 pfam03359, GKAP, Guanylate-kinase-associated protein (GKAP)
protein.
Length = 342
Score = 30.6 bits (69), Expect = 3.8
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 16 KKIKQSKVKKKIKQSKVKKKIKQPLICKTLIFELKLNLKILD--EDLKRILHARRIMSK 72
+++K + +KK+ KK K P++ + E L+ E R+ A+R S
Sbjct: 261 QQLKANDWQKKVPPPVPKKPAKGPIVKPAISREKSLDSSDRQRQEARSRLAAAKRAASF 319
>gnl|CDD|153365 cd07681, F-BAR_PACSIN3, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Protein kinase C and
Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR
domains are dimerization modules that bind and bend
membranes and are found in proteins involved in membrane
dynamics and actin reorganization. Protein kinase C and
Casein kinase Substrate in Neurons (PACSIN) proteins,
also called Synaptic dynamin-associated proteins
(Syndapins), act as regulators of cytoskeletal and
membrane dynamics. Vetebrates harbor three isoforms with
distinct expression patterns and specific functions.
PACSIN 3 or Syndapin III is expressed ubiquitously and
regulates glucose uptake in adipocytes through its role
in GLUT1 trafficking. It also modulates the subcellular
localization and stimulus-specific function of the
cation channel TRPV4. PACSIN 3 contains an N-terminal
F-BAR domain and a C-terminal SH3 domain. F-BAR domains
form banana-shaped dimers with a positively-charged
concave surface that binds to negatively-charged lipid
membranes. They can induce membrane deformation in the
form of long tubules.
Length = 258
Score = 30.3 bits (68), Expect = 4.2
Identities = 13/50 (26%), Positives = 29/50 (58%)
Query: 555 HVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAE 604
H KD++T + + KA+S +++E+++K+ E +E ++ +E E
Sbjct: 143 HAARKDERTAQTRETHAKADSTVSQEQLRKLQDRVEKCTQEAEKAKEQYE 192
>gnl|CDD|179281 PRK01326, prsA, foldase protein PrsA; Reviewed.
Length = 310
Score = 30.2 bits (68), Expect = 4.6
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 558 AKDKKTGKENKITIKANSGLTE--EEIKKMVQSAEANAEED 596
AK+ T KE K K +SG T E++KK + + + D
Sbjct: 177 AKENTTTKEKKGEYKFDSGSTNVPEQVKKAAFALDEDGVSD 217
>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2
complex component). RNases H are enzymes that
specifically hydrolyse RNA when annealed to a
complementary DNA and are present in all living
organisms. In yeast RNase H2 is composed of a complex of
three proteins (Rnh2Ap, Ydr279p and Ylr154p), this
family represents the homologues of Ydr279p. It is not
known whether non yeast proteins in this family fulfil
the same function.
Length = 287
Score = 30.0 bits (68), Expect = 5.0
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 1 SKVKKKIKQSKSKVKKKIKQSK-VKKKIKQSKVKKK 35
S+ +KK K + KKK K+SK VK K K
Sbjct: 246 SRAEKKRKSKEEIKKKKPKESKGVKALKKVVAKGMK 281
>gnl|CDD|216551 pfam01523, PmbA_TldD, Putative modulator of DNA gyrase. tldD and
pmbA were found to suppress mutations in letD and
inhibitor of DNA gyrase. Therefore it has been
hypothesised that the TldD and PmbA proteins modulate
the activity of DNA gyrase. It has also been suggested
that PmbA may be involved in secretion.
Length = 289
Score = 29.9 bits (68), Expect = 5.2
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 565 KENKITIKANSGLTEEEIKKMVQSAEANA---EEDKRLRELAESRNHGESLIHSTKKSLK 621
K+ ++ + S L+EE +KK V+ A A A ED L L
Sbjct: 39 KDGRVGFASTSDLSEEALKKAVERALALAKLSPEDPAGLPDPSPLPPVPDLYDPDPADLS 98
Query: 622 IKEAYEVLSDSEKRI 636
++E E+L + E+
Sbjct: 99 LEEKIELLKELEEAA 113
>gnl|CDD|219373 pfam07318, DUF1464, Protein of unknown function (DUF1464). This
family consists of several hypothetical archaeal
proteins of around 350 residues in length. The function
of this family is unknown.
Length = 336
Score = 30.1 bits (68), Expect = 5.4
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 400 KVSDINDIILVGGMTRMPKVQEKVKEFFGK-DPRRDINPDEAV----AVGAAIQGSVLSG 454
V D +II+ G + R+P+ +K+ + R + A GAAI + L+G
Sbjct: 252 SVYDPREIIVSGRLKRIPEFGKKLDFRLEEIASVRRLLGGAGKAKEAAQGAAIIANALAG 311
Query: 455 DR 456
R
Sbjct: 312 GR 313
>gnl|CDD|223996 COG1070, XylB, Sugar (pentulose and hexulose) kinases
[Carbohydrate transport and metabolism].
Length = 502
Score = 30.4 bits (69), Expect = 5.5
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIE 97
M ++GID+GTT+ + + +V+
Sbjct: 3 MKYVLGIDIGTTSVKAVLFDEDGGEVVA 30
>gnl|CDD|223169 COG0091, RplV, Ribosomal protein L22 [Translation, ribosomal
structure and biogenesis].
Length = 120
Score = 28.8 bits (65), Expect = 6.0
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 580 EEIKKMVQSAEANAEEDKRL 599
+ +KK+++SA ANAE +K L
Sbjct: 53 KLVKKVLESAIANAENNKGL 72
>gnl|CDD|217023 pfam02414, Borrelia_orfA, Borrelia ORF-A. This protein is encoded
by an open reading frame in plasmid borne DNA repeats of
Borrelia species. This protein is known as ORF-A. The
function of this putative protein is unknown.
Length = 285
Score = 30.0 bits (68), Expect = 6.0
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 4 KKKIKQSKSKVKKKIKQSKVKKKIK----QSKVKKKIKQPLICKTLIFELKL----NLKI 55
KK ++SK K K I++ K+KK K ++ +KK IK L+ I E L LK
Sbjct: 141 KKIKEESKKKNSKNIEKLKIKKYFKKCNFKTNLKKDIKIKLLKIIKIEENFLIKNKKLKN 200
Query: 56 LDEDLKRIL 64
+ LK IL
Sbjct: 201 KQKTLKNIL 209
>gnl|CDD|149827 pfam08886, GshA, Glutamate-cysteine ligase. This is a rare family
of glutamate--cysteine ligases, EC:6.3.2.2, demonstrated
first in Thiobacillus ferrooxidans and present in a few
other Proteobacteria. It is the first of two enzymes for
glutathione biosynthesis. It is also called
gamma-glutamylcysteine synthetase. The structure of this
family has been solved, and is similar to that of human
glutathione synthetase and very different to
gamma-glutamylcysteine synthetase from Escherichia coli.
Length = 404
Score = 29.9 bits (68), Expect = 6.4
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 27/89 (30%)
Query: 145 KFNEKEVQKDISLMPYKIVKADNGD---AWISVRGKKLAPPQISAEVLR--------KMK 193
K EK + I P+ VKADNG ++VR S + + KM
Sbjct: 247 KIREKYKEYGIKEKPFVFVKADNGTYGMGIMTVR---------SGDEVLALNRKQRNKMS 297
Query: 194 KTAEDYLGGEITEAVIT--VPAY--FNDA 218
E G E++E +I V + FNDA
Sbjct: 298 VIKE---GLEVSEVIIQEGVYTFERFNDA 323
>gnl|CDD|201483 pfam00873, ACR_tran, AcrB/AcrD/AcrF family. Members of this family
are integral membrane proteins. Some are involved in
drug resistance. AcrB cooperates with a membrane fusion
protein, AcrA, and an outer membrane channel TolC. The
structure shows the AcrB forms a homotrimer.
Length = 1021
Score = 30.3 bits (69), Expect = 6.5
Identities = 11/74 (14%), Positives = 25/74 (33%), Gaps = 1/74 (1%)
Query: 437 PDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIPTKFSQVF 496
P V + L L V G++ + +++ +P + V
Sbjct: 648 PGANVFLFQPPAIRELGTASGFRSDLQVKIFGDGLDALDEARNQILAALAQLPG-LADVR 706
Query: 497 STAEDNQPAVTVKV 510
+++QP + V +
Sbjct: 707 PNGQEDQPQLQVNI 720
>gnl|CDD|190164 pfam01929, Ribosomal_L14e, Ribosomal protein L14. This family
includes the eukaryotic ribosomal protein L14.
Length = 73
Score = 27.1 bits (61), Expect = 7.8
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 2 KVKKKIKQSKSKVKKKIKQSKVKKKIKQSKVKKKI 36
KVK VKK +++ V +K +S KK+
Sbjct: 15 KVKIPRGARTGTVKKAWEKADVLEKWAESSWAKKL 49
>gnl|CDD|222513 pfam14052, Caps_assemb_Wzi, Capsule assembly protein Wzi. Many
bacteria are covered in a layer of surface-associated
polysaccharide called the capsule. These capsules can be
divided into four groups depending upon the organisation
of genes responsible for capsule assembly, the assembly
pathway and regulation. This family plays a role in
group 1 capsule biosynthesis. It is likely to be
involved in the later stages of capsule assembly. It is
likely to consist of a beta-barrel structure.
Length = 441
Score = 29.6 bits (67), Expect = 7.9
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 282 GEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLR 323
GE + LS D F G + D I D N++ G D R
Sbjct: 220 GEGRPNSLSDFWDAFFGKGNGGDDSGDQINDPGNQLGGFDFR 261
>gnl|CDD|212685 cd11735, HSPA12A_like_NBD, Nucleotide-binding domain of HSPA12A and
similar proteins. HSPA12A (also known as 70-kDa heat
shock protein-12A) belongs to the heat shock protein 70
(HSP70) family of chaperones that assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Typically, HSP70s
have a nucleotide-binding domain (NBD) and a
substrate-binding domain (SBD). The nucleotide sits in a
deep cleft formed between the two lobes of the NBD. The
two subdomains of each lobe change conformation between
ATP-bound, ADP-bound, and nucleotide-free states. ATP
binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). No co-chaperones have yet been
identified for HSPA12A. The gene encoding HSPA12A maps
to 10q26.12, a cytogenetic region that might represent a
common susceptibility locus for both schizophrenia and
bipolar affective disorder; reduced expression of
HSPA12A has been shown in the prefrontal cortex of
subjects with schizophrenia. HSPA12A is also a candidate
gene for forelimb-girdle muscular anomaly, an autosomal
recessive disorder of Japanese black cattle. HSPA12A is
predominantly expressed in neuronal cells. It may play a
role in the atherosclerotic process.
Length = 467
Score = 29.6 bits (66), Expect = 8.1
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 400 KVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSG 454
+VS + + LVGG P +Q+ V+ FG R I D + + ++G+VL G
Sbjct: 415 EVSTVKFLFLVGGFAESPLLQQAVQAAFGDQCRVIIPQDVGLTI---LKGAVLFG 466
>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation,
ribosomal structure and biogenesis / Posttranslational
modification, protein turnover, chaperones].
Length = 379
Score = 29.6 bits (66), Expect = 8.2
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 10/57 (17%)
Query: 622 IKEAYEVLSDSEKRIIYDQ-YGHAGIDPNMSGSSASAEASNFADAFGDIFGDIFGSN 677
I++A EVL D + R+ YD A + P + D F +++ +F
Sbjct: 94 IQKAREVLGDRKLRLQYDSNDFDADVPPPRIYTP---------DEFFEVWEPVFERE 141
>gnl|CDD|224645 COG1731, COG1731, Archaeal riboflavin synthase [Coenzyme
metabolism].
Length = 154
Score = 28.6 bits (64), Expect = 8.5
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 102 ARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLI 142
AR +A E ++L G KR V K+ AAKRLI
Sbjct: 12 ARVDMGSVAIDELKKLLPGIKIKRYTVPGIKDLPVAAKRLI 52
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.134 0.375
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 48,188,755
Number of extensions: 4964194
Number of successful extensions: 6051
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5464
Number of HSP's successfully gapped: 232
Length of query: 945
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 839
Effective length of database: 6,236,078
Effective search space: 5232069442
Effective search space used: 5232069442
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (28.5 bits)