RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2902
(945 letters)
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 1078 bits (2790), Expect = 0.0
Identities = 397/568 (69%), Positives = 491/568 (86%), Gaps = 3/568 (0%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
M KIIGIDLGTTNSCV+I++G+ P+V+EN+EG RTTPS+IAY ++GE LVG PAKRQAVT
Sbjct: 1 MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVT 60
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVL 189
NP+NT++A KRLIGR+F ++EVQ+D+S+MP+KI+ ADNGDAW+ V+G+K+APPQISAEVL
Sbjct: 61 NPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVL 120
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
+KMKKTAEDYLG +TEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALA+G
Sbjct: 121 KKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYG 180
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
LDK +R I VYDLGGGTFD+SIIEI +VDGEK FEVL+TNGDT LGGEDFD R+I+Y
Sbjct: 181 LDKG-TGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINY 239
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLK 369
+++EF K GIDLR D +A+QR+K +AE+AKIELSS++QT++N PYI P H+N+K
Sbjct: 240 LVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIK 299
Query: 370 ITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK 429
+TRAKLE LV++L+ R+IEP ++A++DAG+ VSDI+D+ILVGG TRMP VQ+KV EFFGK
Sbjct: 300 VTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGK 359
Query: 430 DPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIP 489
+PR+D+NPDEAVA+GAA+QG VL+GD KD+LLLDVTPLSLGIETMGG+MT +I KNTTIP
Sbjct: 360 EPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIP 419
Query: 490 TKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549
TK SQVFSTAEDNQ AVT+ V QGER+ + NK LG+FNL+GI PA RG+PQIEVTFDID
Sbjct: 420 TKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDID 479
Query: 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHG 609
A+GILHV+AKDK +GKE KITIKA+SGL E+EI+KMV+ AEANAE D++ EL ++RN G
Sbjct: 480 ADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFDELVQTRNQG 539
Query: 610 ESLIHSTKKSLKIKEAYEVLSDSEKRII 637
+ L+HST+K + +EA + L +K I
Sbjct: 540 DHLLHSTRKQV--EEAGDKLPADDKTAI 565
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain
rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus
HTA426}
Length = 509
Score = 966 bits (2499), Expect = 0.0
Identities = 318/541 (58%), Positives = 404/541 (74%), Gaps = 32/541 (5%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
MSKIIGIDLGTTNSCV+++EG + KVI N EG RTTPSV+A+ +NGE LVG AKRQA+T
Sbjct: 1 MSKIIGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAF-KNGERLVGEVAKRQAIT 59
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVL 189
NP NTI + KR +G + + + GK+ P +ISA +L
Sbjct: 60 NP-NTIISIKRHMGTDY------------------------KVEIEGKQYTPQEISAIIL 94
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
+ +K AEDYLG +T AVITVPAYFNDAQRQATKDAGRIAGLEV+RIINEPTAAALA+G
Sbjct: 95 QYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEVERIINEPTAAALAYG 154
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
LDK + D+ I+VYDLGGGTFDVSI+E+ G+ FEV +T GD LGG+DFDQ IIDY
Sbjct: 155 LDK--EEDQTILVYDLGGGTFDVSILEL----GDGVFEVKATAGDNHLGGDDFDQVIIDY 208
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLK 369
++++F + +GIDL KD +ALQR+K +AE+AK ELS QT+I+ P+I+ + P+HL +
Sbjct: 209 LVNQFKQEHGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISANENGPLHLEMT 268
Query: 370 ITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK 429
+TRAK E L L+ RT+ P R A++DAG+ +DI+ +ILVGG TR+P VQE +K GK
Sbjct: 269 LTRAKFEELSAHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAVQEAIKRELGK 328
Query: 430 DPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIP 489
+P + +NPDE VA+GAAIQG V++G+ KD++LLDVTPLSLGIETMGG+ TK+I++NTTIP
Sbjct: 329 EPHKGVNPDEVVAIGAAIQGGVIAGEVKDVVLLDVTPLSLGIETMGGVFTKLIERNTTIP 388
Query: 490 TKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549
T SQVF+TA DNQ V + V QGER M + NK LG F L GIPPA RG+PQIEVTFDID
Sbjct: 389 TSKSQVFTTAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTFDID 448
Query: 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHG 609
ANGI+HV AKD T KE ITIK++SGL+EEEI++M++ AE NAE D++ +E AE RN
Sbjct: 449 ANGIVHVRAKDLGTNKEQSITIKSSSGLSEEEIQRMIKEAEENAEADRKRKEAAELRNEA 508
Query: 610 E 610
+
Sbjct: 509 D 509
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus}
SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Length = 554
Score = 918 bits (2376), Expect = 0.0
Identities = 290/563 (51%), Positives = 393/563 (69%), Gaps = 20/563 (3%)
Query: 70 MSK--IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQA 127
MSK +GIDLGTT SCV + + + ++I N +G RTTPS +A+ + E L+G AK Q
Sbjct: 1 MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTD-TERLIGDAAKNQV 59
Query: 128 VTNPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIV-KADNGDAWISVRG--KKLAPPQI 184
NP NT++ AKRLIGR+F++ VQ D+ P+ +V A + +G K P ++
Sbjct: 60 AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEV 119
Query: 185 SAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAA 244
S+ VL KMK+ AE YLG +T AV+TVPAYFND+QRQATKDAG IAGL V RIINEPTAA
Sbjct: 120 SSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAA 179
Query: 245 ALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQ 304
A+A+GLDK ++RN++++DLGGGTFDVSI+ I FEV ST GDT LGGEDFD
Sbjct: 180 AIAYGLDKKVGAERNVLIFDLGGGTFDVSILTI----AAGIFEVKSTAGDTHLGGEDFDN 235
Query: 305 RIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPV 364
R++++ + EF + + D+ ++ A++R++ + ERAK LSSS Q I + +
Sbjct: 236 RMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEG----I 291
Query: 365 HLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVK 424
ITRA+ E L +L T++P A++DA + S I+DI+LVGG TR+PK+Q+ ++
Sbjct: 292 DFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQ 351
Query: 425 EFF-GKDPRRDINPDEAVAVGAAIQGSVLSGDR----KDLLLLDVTPLSLGIETMGGIMT 479
+FF GK+ + INPDEAVA GAA+Q ++LSGD+ +DLLLLDVTPLSLGIET GG+MT
Sbjct: 352 DFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMT 411
Query: 480 KMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGI 539
+IK+NTTIPTK +Q F+T DNQP V ++VY+GER M N +LG+F L GIPPA RG+
Sbjct: 412 VLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGV 471
Query: 540 PQIEVTFDIDANGILHVTAKDKKTGKENKITIKANSG-LTEEEIKKMVQSAEANAEEDKR 598
PQIEVTFDIDANGIL+V+A DK TGKENKITI + G L++E+I++MVQ AE ED++
Sbjct: 472 PQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEK 531
Query: 599 LRELAESRNHGESLIHSTKKSLK 621
R+ S+N ES + K +++
Sbjct: 532 QRDKVSSKNSLESYAFNMKATVE 554
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 803 bits (2077), Expect = 0.0
Identities = 148/596 (24%), Positives = 276/596 (46%), Gaps = 41/596 (6%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
MS G+DLG NS +++ ++ N R+TPSV+ + +G K + +
Sbjct: 1 MSTPFGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGP-KNRYLGETGKNKQTS 59
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVR----GKKLAPPQIS 185
N KNT+ KR+IG ++ + +++ K+V+ D+ VR + Q++
Sbjct: 60 NIKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLA 119
Query: 186 AEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAA 245
A + K+K T + IT+ I VP ++ + QR DA RIAGL RI+N+ TAA
Sbjct: 120 AMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAG 179
Query: 246 LAFGLDKSG-----KSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGE 300
+++G+ K+ + R + D+G ++ SI+ Q +VL T D GG
Sbjct: 180 VSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKK----GQLKVLGTACDKHFGGR 235
Query: 301 DFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSN 360
DFD I ++ DEF ID+R++ A RI +AE+ K LS++ + ++ N
Sbjct: 236 DFDLAITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVE--SVMN 293
Query: 361 GAPVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQ 420
V ++ +++R +LE LV L+ R EP A+ A + +++ + ++GG TR+P ++
Sbjct: 294 D--VDVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLK 351
Query: 421 EKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSGDRK--DLLLLDVTPLSLGIETMGGI- 477
+ + E FGK +N DEA+A GAA ++ S + D+ P S+ +
Sbjct: 352 QSISEAFGKPLSTTLNQDEAIAKGAAFICAIHSPTLRVRPFKFEDIHPYSVSYSWDKQVE 411
Query: 478 ---MTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGI-- 532
++ ++ P+ + D A + + + + G+
Sbjct: 412 DEDHMEVFPAGSSFPSTKLITLNRTGDFSMAASYTDITQLPPNTPEQ--IANWEITGVQL 469
Query: 533 PPALRGIPQIEVTFDIDANGILHV----------TAKDKKTGKENKITIKANSG-LTEEE 581
P +P +++ D +G+ + D KT K++ +TI A++ L ++
Sbjct: 470 PEGQDSVP-VKLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLTIVAHTFGLDAKK 528
Query: 582 IKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRII 637
+ ++++ +DK + E + +N E I++ + L+ + A SD+EK +
Sbjct: 529 LNELIEKENEMLAQDKLVAETEDRKNTLEEYIYTLRGKLEEEYA-PFASDAEKTKL 583
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor,
coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia
coli} SCOP: c.55.1.1 c.55.1.1
Length = 383
Score = 769 bits (1988), Expect = 0.0
Identities = 272/384 (70%), Positives = 339/384 (88%), Gaps = 1/384 (0%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
M KIIGIDLGTTNSCV+I++G+ P+V+EN+EG RTTPS+IAY ++GE LVG PAKRQAVT
Sbjct: 1 MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVT 60
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVL 189
NP+NT++A KRLIGR+F ++EVQ+D+S+MP+KI+ ADNGDAW+ V+G+K+APPQISAEVL
Sbjct: 61 NPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVL 120
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
+KMKKTAEDYLG +TEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALA+G
Sbjct: 121 KKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYG 180
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
LDK +R I VYDLGGGTFD+SIIEI +VDGEK FEVL+TNGDT LGGEDFD R+I+Y
Sbjct: 181 LDKG-TGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINY 239
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLK 369
+++EF K GIDLR D +A+QR+K +AE+AKIELSS++QT++N PYI P H+N+K
Sbjct: 240 LVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIK 299
Query: 370 ITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK 429
+TRAKLE LV++L+ R+IE ++A++DAG+ VSDI+D+ILVGG TRMP VQ+KV EFFGK
Sbjct: 300 VTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGK 359
Query: 430 DPRRDINPDEAVAVGAAIQGSVLS 453
+PR+D+NPDEAVA+GAA+QG VL+
Sbjct: 360 EPRKDVNPDEAVAIGAAVQGGVLT 383
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP,
chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae}
PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Length = 394
Score = 613 bits (1583), Expect = 0.0
Identities = 193/391 (49%), Positives = 265/391 (67%), Gaps = 14/391 (3%)
Query: 67 RRIMSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQ 126
+IGIDLGTT SCV++++ + +++ N +G R TPS +A+ + E L+G AK Q
Sbjct: 14 VENYGTVIGIDLGTTYSCVAVMKNGKTEILANEQGNRITPSYVAFTD-DERLIGDAAKNQ 72
Query: 127 AVTNPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAW-ISVRG--KKLAPPQ 183
NP+NTI+ KRLIG K+N++ VQKDI +P+ +V D A +SV+G K P +
Sbjct: 73 VAANPQNTIFDIKRLIGLKYNDRSVQKDIKHLPFNVVNKDGKPAVEVSVKGEKKVFTPEE 132
Query: 184 ISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTA 243
IS +L KMK+ AEDYLG ++T AV+TVPAYFNDAQRQATKDAG IAGL V RI+NEPTA
Sbjct: 133 ISGMILGKMKQIAEDYLGTKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVLRIVNEPTA 192
Query: 244 AALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFD 303
AA+A+GLDKS K + I+VYDLGGGTFDVS++ I FEV +T+GDT LGGEDFD
Sbjct: 193 AAIAYGLDKSDK-EHQIIVYDLGGGTFDVSLLSI----ENGVFEVQATSGDTHLGGEDFD 247
Query: 304 QRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAP 363
+I+ ++ F K +GID+ ++ AL ++K AE+AK LSS T I
Sbjct: 248 YKIVRQLIKAFKKKHGIDVSDNNKALAKLKREAEKAKRALSSQMSTRIEIDSFVDG---- 303
Query: 364 VHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKV 423
+ L+ +TRAK E L +L +T++P ++D+G++ D++DI+LVGG TR+PKVQ+ +
Sbjct: 304 IDLSETLTRAKFEELNLDLFKKTLKPVEKVLQDSGLEKKDVDDIVLVGGSTRIPKVQQLL 363
Query: 424 KEFF-GKDPRRDINPDEAVAVGAAIQGSVLS 453
+ +F GK + INPDEAVA GAA+Q VLS
Sbjct: 364 ESYFDGKKASKGINPDEAVAYGAAVQAGVLS 394
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex,
ATP-binding, chaperone, nucleotide-BIND phosphoprotein,
stress response; HET: ADP; 1.30A {Homo sapiens} PDB:
1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A*
1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A*
3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ...
Length = 404
Score = 598 bits (1544), Expect = 0.0
Identities = 190/392 (48%), Positives = 258/392 (65%), Gaps = 15/392 (3%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
IGIDLGTT SCV + + + ++I N +G RTTPS +A+ + E L+G AK Q
Sbjct: 22 SMPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTD-TERLIGDAAKNQVAM 80
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIV-KADNGDAWISVRG--KKLAPPQISA 186
NP NTI+ AKRLIGRKF + VQ D+ P+++V + + +G K P +IS+
Sbjct: 81 NPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEISS 140
Query: 187 EVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAAL 246
VL KMK+ AE YLGG++ AVITVPAYFND+QRQATKDAG I GL V RIINEPTAAA+
Sbjct: 141 MVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAAI 200
Query: 247 AFGLDKSGKSD--RNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQ 304
A+GLDK G + +N++++DLGGGTFDVSI+ I D FEV ST GDT LGGEDFD
Sbjct: 201 AYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTIED----GIFEVKSTAGDTHLGGEDFDN 256
Query: 305 RIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPV 364
R++ ++ +EF + + D+ + A++R++ + ERAK LSSS Q I + V
Sbjct: 257 RMVSHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEG----V 312
Query: 365 HLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVK 424
ITRA+ E L +L T+EP A++DA + I +I+LVGG TR+PK+Q+ ++
Sbjct: 313 DFYTSITRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQ 372
Query: 425 EFF-GKDPRRDINPDEAVAVGAAIQGSVLSGD 455
+FF GK+ + INPDEAVA GAA+Q ++L GD
Sbjct: 373 DFFNGKELNKSINPDEAVAYGAAVQAAILIGD 404
>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate
binding domain, structural G consortium, SGC, chaperone;
2.80A {Homo sapiens}
Length = 182
Score = 341 bits (877), Expect = e-112
Identities = 100/174 (57%), Positives = 131/174 (75%)
Query: 448 QGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVT 507
G L + +DVTPLSLGIET+GG+ TK+I +NTTIPTK SQVFSTA D Q V
Sbjct: 9 SGVDLGTENLYFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVE 68
Query: 508 VKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDIDANGILHVTAKDKKTGKEN 567
+KV QGEREM NK+LG+F L GIPPA RG+PQIEVTFDIDANGI+HV+AKDK TG+E
Sbjct: 69 IKVCQGEREMAGDNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGREQ 128
Query: 568 KITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLK 621
+I I+++ GL++++I+ MV++AE AEED+R +E E+ N E +IH T+ ++
Sbjct: 129 QIVIQSSGGLSKDDIENMVKNAEKYAEEDRRKKERVEAVNMAEGIIHDTETKME 182
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB:
3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A
1bpr_A 2bpr_A 1dg4_A
Length = 219
Score = 331 bits (851), Expect = e-108
Identities = 120/179 (67%), Positives = 147/179 (82%), Gaps = 2/179 (1%)
Query: 459 LLLLDVTPLSLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMV 518
+LLLDVTPLSLGIETMGG+MT +I KNTTIPTK SQVFSTAEDNQ AVT+ V QGER+
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRA 60
Query: 519 SGNKILGEFNLEGIPPALRGIPQIEVTFDIDANGILHVTAKDKKTGKENKITIKANSGLT 578
+ NK LG+FNL+GI PA RG+PQIEVTFDIDA+GILHV+AKDK +GKE KITIKA+SGL
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLN 120
Query: 579 EEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRII 637
E+EI+KMV+ AEANAE D++ EL ++RN G+ L+HST+K + +EA + L +K I
Sbjct: 121 EDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQV--EEAGDKLPADDKTAI 177
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia
coli} SCOP: a.8.4.1 b.130.1.1
Length = 227
Score = 322 bits (829), Expect = e-104
Identities = 75/176 (42%), Positives = 111/176 (63%), Gaps = 2/176 (1%)
Query: 462 LDVTPLSLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGN 521
+DV PLSLG+ETMGG++ K+I +NTTIP +Q F+T +D Q A+++ V QGERE+V
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60
Query: 522 KILGEFNLEGIPPALRGIPQIEVTFDIDANGILHVTAKDKKTGKENKITIKANSGLTEEE 581
+ L F L GIP G I VTF +DA+G+L VTA +K TG E I +K + GLT+ E
Sbjct: 61 RSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDSE 120
Query: 582 IKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRII 637
I M++ + + AE+D + R LAE + ++ S +L +LS +E+++I
Sbjct: 121 IASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGAL--AADAALLSAAERQVI 174
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5;
beta-strands, chaperone, heat shock, mitochondrion;
2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1
g.54.1.1
Length = 248
Score = 307 bits (789), Expect = 3e-98
Identities = 70/237 (29%), Positives = 104/237 (43%), Gaps = 11/237 (4%)
Query: 689 GKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQ 748
GKD+++ + +LE+ G + + +CK C G G KKG C +C+GQG +
Sbjct: 11 GKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVK-KCTSCNGQGIKFVT 69
Query: 749 Q----GFFSIQQTCPKCQGAGKVIP--HPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIR 802
+ Q C C G G +I C CNG K LEV + G+++ RI
Sbjct: 70 RQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIV 129
Query: 803 STGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNG 862
G + + G++ + +PHK F+RDGDDL YE I TA GGE ++G
Sbjct: 130 FKGEADQAPDVIP-GDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSG 188
Query: 863 KAFFV-IPEG--TQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLL 916
V I G G + GKG+ + G+L TI+ P ++ L
Sbjct: 189 DWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPENHFTSEENLK 245
>3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12,
HSP70 protein, peptide-BIN domain, PSI-2, protein
structure initiative; 1.72A {Caenorhabditis elegans}
Length = 151
Score = 289 bits (741), Expect = 1e-92
Identities = 93/148 (62%), Positives = 122/148 (82%)
Query: 463 DVTPLSLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNK 522
DVTPLSLGIET+GGIMTK+I +NTTIPTK SQVFSTA D Q V +KV+QGEREM + NK
Sbjct: 4 DVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNK 63
Query: 523 ILGEFNLEGIPPALRGIPQIEVTFDIDANGILHVTAKDKKTGKENKITIKANSGLTEEEI 582
+LG+F+L GIPPA RG+PQ+EVTFDIDANGI++V+A+D+ TGKE +I I+++ GL++++I
Sbjct: 64 LLGQFSLVGIPPAPRGVPQVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGGLSKDQI 123
Query: 583 KKMVQSAEANAEEDKRLRELAESRNHGE 610
+ M++ AE NA ED + +EL E N E
Sbjct: 124 ENMIKEAEKNAAEDAKRKELVEVINQAE 151
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics,
PSI-2, protein STRU initiative; 2.90A {Klebsiella
pneumoniae subsp} PDB: 2kqx_A
Length = 329
Score = 285 bits (732), Expect = 6e-89
Identities = 87/314 (27%), Positives = 130/314 (41%), Gaps = 61/314 (19%)
Query: 622 IKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASAEASNFADAFGDIFGDIFGSNRDRD 681
+ EA+EVL D ++R YDQ DP + E S F DIF +FG +
Sbjct: 73 LAEAWEVLKDEQRRAEYDQLWQHRNDPGFGRQRQTHEQSYSQQDFDDIFSSMFGQQAHQR 132
Query: 682 NNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSG 741
+ G DL + + LE+ + S
Sbjct: 133 RRQHAARGHDLEIEVAVFLEETL--------------------AEQTRTIS--------- 163
Query: 742 QGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRI 801
P + G+ + KTL VKIPAG+ + RI
Sbjct: 164 --------------------------YNLPVYNVFGMIESETPKTLNVKIPAGVVDGQRI 197
Query: 802 RSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLN 861
R G G PG NGG NG+L++ IHI PH +F+ G +L +P++ AALG ++ PTL
Sbjct: 198 RLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLK 257
Query: 862 GKAFFVIPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLET 921
+P G+Q+G+ R++GKG+ + GDLF + I P + E ++L + L
Sbjct: 258 ESILLTVPPGSQAGQRLRIKGKGLV--SKTHTGDLFAVIKIVMPTKPDEKARELWQQLAA 315
Query: 922 SILEGGFKHNPRTK 935
+ E F +PR
Sbjct: 316 A--EASF--DPRKT 325
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain,
structural genomics, APC90014. 2, protein structure
initiative; 1.85A {Caenorhabditis elegans}
Length = 152
Score = 270 bits (693), Expect = 7e-86
Identities = 86/149 (57%), Positives = 114/149 (76%), Gaps = 1/149 (0%)
Query: 463 DVTPLSLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNK 522
DV PL+LGIET+GG+MTK+I +NT IPTK SQVFSTA D+Q AV++ +Y+GER MV N
Sbjct: 4 DVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNH 63
Query: 523 ILGEFNLEGIPPALRGIPQIEVTFDIDANGILHVTAKDKKTGKENKITIKANSG-LTEEE 581
LG F++ GIPPA RG+PQIEVTF+ID NGILHV+A+DK TG +NK+TI + L+ E+
Sbjct: 64 KLGNFDVTGIPPAPRGVPQIEVTFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPED 123
Query: 582 IKKMVQSAEANAEEDKRLRELAESRNHGE 610
I++M+ A+ A +D+ +E ESRN E
Sbjct: 124 IERMINDADKFAADDQAQKEKVESRNELE 152
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics,
APC89502.3, peptide binding, chaperone, BIP, PSI-2;
1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A
Length = 152
Score = 269 bits (691), Expect = 2e-85
Identities = 91/149 (61%), Positives = 109/149 (73%), Gaps = 1/149 (0%)
Query: 463 DVTPLSLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNK 522
DV L+LGIET GG+MT +IK+NT IPTK SQ+FSTA DNQP V +KVY+GER M N
Sbjct: 4 DVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNN 63
Query: 523 ILGEFNLEGIPPALRGIPQIEVTFDIDANGILHVTAKDKKTGKENKITIKANSG-LTEEE 581
+LG+F L GIPPA RG+PQIEVTF +DANGIL V+A DK TGK ITI + G LT+EE
Sbjct: 64 LLGKFELTGIPPAPRGVPQIEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQEE 123
Query: 582 IKKMVQSAEANAEEDKRLRELAESRNHGE 610
I +MV+ AE A ED ++ ESRN E
Sbjct: 124 IDRMVEEAEKFASEDASIKAKVESRNKLE 152
>3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics,
APC90015.11, peptide-binding domain, HS 2, protein
structure initiative; 2.39A {Caenorhabditis elegans}
Length = 152
Score = 269 bits (689), Expect = 3e-85
Identities = 85/149 (57%), Positives = 108/149 (72%), Gaps = 1/149 (0%)
Query: 463 DVTPLSLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNK 522
DV PLSLGIET GG+MT +I +NT IPTK + F+T DNQP V+++VY+GER M N
Sbjct: 4 DVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNH 63
Query: 523 ILGEFNLEGIPPALRGIPQIEVTFDIDANGILHVTAKDKKTGKENKITIKANSG-LTEEE 581
LG F L GIPPA RG+PQIEVTF+IDANGIL+V+A+DK TGK N+ITI+ G LT+ +
Sbjct: 64 RLGTFELSGIPPAPRGVPQIEVTFNIDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSD 123
Query: 582 IKKMVQSAEANAEEDKRLRELAESRNHGE 610
I +MV A+ +ED RE ++RN E
Sbjct: 124 IDRMVHEAKQFEKEDGEQRERVQARNQLE 152
>1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR
{Escherichia coli} SCOP: b.130.1.1
Length = 135
Score = 259 bits (664), Expect = 6e-82
Identities = 90/135 (66%), Positives = 108/135 (80%)
Query: 443 VGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDN 502
+G++ + ++DVTPLSLGIETMGG+MT +I KNTTIPTK SQVFSTAEDN
Sbjct: 1 MGSSHHHHHHGLVPRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDN 60
Query: 503 QPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDIDANGILHVTAKDKK 562
Q AVT+ V QGER+ + NK LG+FNL+GI PA RG+PQIEVTFDIDA+GILHV+AKDK
Sbjct: 61 QSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKN 120
Query: 563 TGKENKITIKANSGL 577
+GKE KITIKA+SGL
Sbjct: 121 SGKEQKITIKASSGL 135
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 104
Score = 183 bits (466), Expect = 2e-54
Identities = 35/102 (34%), Positives = 47/102 (46%)
Query: 689 GKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQ 748
G +E+T QAA G N V D C+ C G G + GT C C G G +
Sbjct: 1 GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETIN 60
Query: 749 QGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVK 790
G F ++ TC +C G G +I PC+ C G G+ K+ K
Sbjct: 61 TGPFVMRSTCRRCGGRGSIIISPCVVCRGAGQAKQKKRSGPS 102
Score = 29.5 bits (67), Expect = 1.7
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 835 GDDLHYEMPISFSTAALGG--EIEAPTL 860
G M ++F+ AA G E +
Sbjct: 1 GSSGSSGMELTFNQAAKGVNKEFTVNIM 28
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure
initiative, midwest center for structural genomics,
MCSG; 2.30A {Klebsiella pneumoniae subsp}
Length = 109
Score = 156 bits (397), Expect = 5e-45
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 827 PHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIK 886
H +F+ G +L +P++ AALG ++ PTL +P G+Q+G+ R++GKG+
Sbjct: 3 AHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLV 62
Query: 887 NIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRTK 935
+ GDLF + I P + E ++L + L +PR
Sbjct: 63 --SKTHTGDLFAVIKIVMPTKPDEKARELWQQLA----AAEASFDPRKT 105
Score = 32.1 bits (74), Expect = 0.20
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 788 EVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHI 825
+ +P G + R+R G G + G+L+ I I
Sbjct: 41 LLTVPPGSQAGQRLRIKGKGLV--SKTHTGDLFAVIKI 76
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A
{Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB:
2b26_A
Length = 170
Score = 155 bits (395), Expect = 6e-44
Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 5/158 (3%)
Query: 761 CQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLY 820
G K G +++++ G + +I G+ G L
Sbjct: 15 FVGKKKSFKIGR---KGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQ 71
Query: 821 IEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFV-IPEGTQSGKIFR 879
I K H F+RDGDDL Y +P+SF + LG T++G+ + + Q +
Sbjct: 72 FVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTST 131
Query: 880 LRGKGIKNIRS-SIPGDLFCHVTIETPVQLTEYQKKLL 916
G+G+ ++ S G+L ++ P+ L + QK+ +
Sbjct: 132 YPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRAI 169
Score = 28.7 bits (65), Expect = 5.4
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 688 NGKDLRYNLEITLEQAAYGFNTSIR 712
+G DL Y L ++ +++ GF+ +I+
Sbjct: 85 DGDDLIYTLPLSFKESLLGFSKTIQ 109
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment);
malaria, structural genomics, structural genomics
consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Length = 180
Score = 150 bits (381), Expect = 6e-42
Identities = 39/161 (24%), Positives = 59/161 (36%), Gaps = 2/161 (1%)
Query: 761 CQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLY 820
G K I +EV+I G ++ ++ +G G+ G S G+L
Sbjct: 18 YLGKRKKIKVTRKRFIEHKVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLV 77
Query: 821 IEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFV-IPEGTQSGKIFR 879
+ I K H F RD L ++ I A G TL+ + + I E
Sbjct: 78 LIIQTKTHPRFTRDDCHLIMKVTIPLVRALTGFTCPVTTLDNRNLQIPIKEIVNPKTRKI 137
Query: 880 LRGKGIKNIRS-SIPGDLFCHVTIETPVQLTEYQKKLLRSL 919
+ +G+ GDL I P LT QKKL++
Sbjct: 138 VPNEGMPIKNQPGQKGDLILEFDICFPKSLTPEQKKLIKEA 178
Score = 28.3 bits (64), Expect = 9.1
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 688 NGKDLRYNLEITLEQAAYGFNTSIR 712
+ L + I L +A GF +
Sbjct: 91 DDCHLIMKVTIPLVRALTGFTCPVT 115
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization
EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A
{Carboxydothermus hydrogenoformans z-29organism_taxid}
Length = 272
Score = 151 bits (384), Expect = 3e-41
Identities = 59/382 (15%), Positives = 113/382 (29%), Gaps = 113/382 (29%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAY-QENGEIL-VGAPAKRQA 127
+ + L N + + P + +I+ V +
Sbjct: 2 NAMELEQKLNLLNDLI----------VREIVNPLPPPYKVGVDLGTADIVLVVTDQEGIP 51
Query: 128 VTNPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAE 187
V + A V+ + + +
Sbjct: 52 V--AGA-LKWAS---------------------------------VVKDGLVVDYIGAIQ 75
Query: 188 VLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALA 247
++R++K E LG E+ +A +P +A AGLE+ +++EP AAA A
Sbjct: 76 IVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPVAAARA 135
Query: 248 FGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRII 307
G++ +V D+GGGT +++IE + + D GG +
Sbjct: 136 LGINDG-------IVVDIGGGTTGIAVIEKGKI-------TAT--FDEPTGGTHLSLVLA 179
Query: 308 DYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLN 367
F + AE K + S ++
Sbjct: 180 GSYKIPFEE-------------------AETIKKDFSRHRE------------------- 201
Query: 368 LKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFF 427
+ ++ IE + +K+ + +VGG + E+ F
Sbjct: 202 -----------IMRVVRPVIEKMALIVKEVIKNYDQTLPVYVVGGTAYLTGFSEEFSRFL 250
Query: 428 GKDPRRDINPDEAVAVGAAIQG 449
GK+ + I+P +G A+ G
Sbjct: 251 GKEVQVPIHPLLVTPLGIALFG 272
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif,
chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Length = 79
Score = 144 bits (365), Expect = 4e-41
Identities = 42/79 (53%), Positives = 57/79 (72%)
Query: 706 GFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAG 765
G IR+P+ + C C+G+GAK GT P +C TC G GQV+M+QGFF++QQTCP CQG G
Sbjct: 1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRG 60
Query: 766 KVIPHPCLDCNGIGRIKRN 784
+I PC C+G GR++R+
Sbjct: 61 TLIKDPCNKCHGHGRVERS 79
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens}
PDB: 3agy_A 3agz_A 2qld_A
Length = 181
Score = 122 bits (309), Expect = 3e-32
Identities = 38/169 (22%), Positives = 74/169 (43%), Gaps = 4/169 (2%)
Query: 753 SIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLN 812
S+++ C K I H L+ +G +K L +++ G + +I G+
Sbjct: 12 SLEEIYSGCTKKMK-ISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTS- 69
Query: 813 GGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFV-IPEG 871
++ + KPH +F+RDG D+ Y IS A G + PTL+G+ V +
Sbjct: 70 NNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDV 129
Query: 872 TQSGKIFRLRGKGIKNIRS-SIPGDLFCHVTIETPVQLTEYQKKLLRSL 919
+ G ++ G+G+ ++ GDL + P ++ + + +L +
Sbjct: 130 IRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQV 178
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural
protein; HET: GDP; 1.90A {Escherichia coli} SCOP:
c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A*
2zhc_A* 3iku_A 3iky_A
Length = 320
Score = 121 bits (304), Expect = 3e-30
Identities = 47/381 (12%), Positives = 114/381 (29%), Gaps = 65/381 (17%)
Query: 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPK 132
++ ID G+TN + E + S +++ + G N +
Sbjct: 2 LVFIDDGSTNIKLQWQESDGTI--------KQHISPNSFKREWAVSFGDKKVFNYTLNGE 53
Query: 133 NTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKM 192
+ + V +I+ + A + G ++ I +
Sbjct: 54 ------QYSFDPISPDAVVTTNIAWQYSDVNVVAVHHA-LLTSGLPVSEVDIVCTL---- 102
Query: 193 KKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFGLDK 252
+Y + + +++ T + G ++ +++ E A +
Sbjct: 103 --PLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQEL 160
Query: 253 SGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILD 312
++++ DLGG T D+S + K + GD+ LG + D +
Sbjct: 161 --DELDSLLIIDLGGTTLDISQVM------GKLSGISKIYGDSSLGVSLVTSAVKDALSL 212
Query: 313 EFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITR 372
K + +A I + ++ + + +I+
Sbjct: 213 ARTKGS------SYLADDIIIHRKDNNYLKQRINDENKISI------------------- 247
Query: 373 AKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPR 432
V E + + + + + S ++++GG + + + VK+
Sbjct: 248 ------VTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDE 299
Query: 433 RDI---NPDEAVAVGAAIQGS 450
R N + G + G+
Sbjct: 300 RFFKTNNSQYDLVNGMYLIGN 320
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR
{Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Length = 103
Score = 91.1 bits (227), Expect = 3e-22
Identities = 31/55 (56%), Positives = 39/55 (70%)
Query: 621 KIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASAEASNFADAFGDIFGDIFG 675
+IKEAYEVL+DS+KR YDQYGHA + G ++F+D FGD+FGDIFG
Sbjct: 48 EIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGGGFGGGADFSDIFGDVFGDIFG 102
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB,
PARM, structural PROT; 1.90A {Thermoplasma acidophilum}
SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Length = 346
Score = 97.5 bits (242), Expect = 6e-22
Identities = 61/391 (15%), Positives = 119/391 (30%), Gaps = 93/391 (23%)
Query: 72 KIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNP 131
++G+D+G ++ KVI PS A E +G +
Sbjct: 22 VVVGLDVGYGDT----------KVIGVDGKRIIFPSRWAVTETESWGIGGKIPVLSTDGG 71
Query: 132 KNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRK 191
+ K A + + +LA + +
Sbjct: 72 QTKFIYGKY------------------------ASGNNIRVPQGDGRLASKEAFPLIAAA 107
Query: 192 MKKTAEDYLGGEITEAVIT-VPAYFNDAQRQATKDA------------GRIAGLEVKRII 238
+ ++ G + + + P D + +A K+A G + + R+I
Sbjct: 108 LWESGIHNDGSPVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLI 167
Query: 239 NEPTAAALAFGLDKSG---KSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDT 295
P A L G + VV D+G T DV I + D++ V+ +
Sbjct: 168 MRPQGVGAALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDMEP-----VVELSFSL 222
Query: 296 FLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPY 355
+G D + I E + DL A+ A +Q ++ P
Sbjct: 223 QIGVGDAISALSRKIAKETGFVVPFDL-------------AQEALSHPVMFRQKQVGGP- 268
Query: 356 IAMSNGAPVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTR 415
+++ LE L + +I + +V + +I VGG +
Sbjct: 269 -------------EVSGPILEDLANRIIEN-------IRLNLRGEVDRVTSLIPVGGGSN 308
Query: 416 MPKVQEKVKEFFGKDPRRDI--NPDEAVAVG 444
+ + ++ +E + + A A+G
Sbjct: 309 L--IGDRFEEIAPGTLVKIKPEDLQFANALG 337
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets,
chaperone; 2.07A {Saccharomyces cerevisiae}
Length = 121
Score = 81.2 bits (201), Expect = 2e-18
Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Query: 831 FERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFV-IPEG--TQSGKIFRLRGKGIKN 887
F+RDGDDL YE I TA GGE ++G V I G G + GKG+
Sbjct: 2 FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61
Query: 888 IRSSIPGDLFCHVTIETP--VQLTEYQKKLLRSL 919
+ G+L TI+ P +E K L +
Sbjct: 62 PKYGGYGNLIIKFTIKFPENHFTSEENLKKLEEI 95
Score = 34.2 bits (79), Expect = 0.053
Identities = 19/66 (28%), Positives = 23/66 (34%), Gaps = 13/66 (19%)
Query: 763 GAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAG--IENNMRIRSTGNGEPGLNGGSNGNLY 820
G + H + L+V I G I MR G G P G GNL
Sbjct: 23 GGEFALEH--VS---------GDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLI 71
Query: 821 IEIHIK 826
I+ IK
Sbjct: 72 IKFTIK 77
Score = 29.1 bits (66), Expect = 2.4
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 688 NGKDLRYNLEITLEQAAYGFNTSIR 712
+G DL Y EI L A G ++
Sbjct: 5 DGDDLVYEAEIDLLTAIAGGEFALE 29
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 77.6 bits (191), Expect = 3e-16
Identities = 35/147 (23%), Positives = 57/147 (38%), Gaps = 21/147 (14%)
Query: 588 SAEANAEEDKR-LRELAE----SRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYG 642
S A++ E ++ ++LA +N H LKI AYEVL D + R YD+YG
Sbjct: 11 SKTASSREIRQAFKKLALKLHPDKNPNNPNAH--GDFLKINRAYEVLKDEDLRKKYDKYG 68
Query: 643 HAGIDPNMSGSSASAEASNFADAFGDIFGDIFGSNRDRDNNNKGSNGK------------ 690
G++ N G S S + FG D +R + N
Sbjct: 69 EKGLEDNQGGQYES--WSYYRYDFGIYDDDPEIITLERREFDAAVNSGELWFVNFYSPGC 126
Query: 691 DLRYNLEITLEQAAYGFNTSIRVPSWD 717
++L T + A + +R+ + +
Sbjct: 127 SHCHDLAPTWREFAKEVDGLLRIGAVN 153
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 79.9 bits (196), Expect = 2e-15
Identities = 63/433 (14%), Positives = 141/433 (32%), Gaps = 134/433 (30%)
Query: 279 DVD-GEKQF---EVLSTNGDTFLGGEDFD-------------QRIIDYILDEFNKINGID 321
D + GE Q+ ++LS D F+ ++FD + ID+I+ + ++G
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFV--DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 322 ------LRKDSIALQRIKASAERAKIE-LSSSKQTEINEP------YIA----MSNGAPV 364
L K +Q+ R + L S +TE +P YI + N V
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 365 HLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVK 424
++R + L ++ A +++ ++++ G +
Sbjct: 126 FAKYNVSRLQPYL---------------KLRQALLELRPAKNVLIDG----VLG------ 160
Query: 425 EFFGKDPRRDINPDEAVAVGAAIQGSVLSGDR-KDLLLLDVTP-----LSLG-IETMGGI 477
GK + ++ D + L+L + +
Sbjct: 161 --SGK--------------------TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 478 MTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPAL- 536
+ + + + +++ D+ + ++++ + E+ + L + L
Sbjct: 199 LEML----QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL----RRL--LKSKPYENCLL 248
Query: 537 --RGI--PQIEVTFDIDANGILHVTAKDK------KTGKENKITI-KANSGLTEEEIKKM 585
+ + F++ IL +T + K I++ + LT +E+K +
Sbjct: 249 VLLNVQNAKAWNAFNLSCK-IL-LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 586 VQSAEANAEEDKRLRELAESRNH------GESLI----------HSTKKSLK--IKEAYE 627
+ +D L + N ES+ H L I+ +
Sbjct: 307 LLKYLDCRPQD--LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 628 VLSDSEKRIIYDQ 640
VL +E R ++D+
Sbjct: 365 VLEPAEYRKMFDR 377
Score = 71.0 bits (173), Expect = 2e-12
Identities = 101/680 (14%), Positives = 192/680 (28%), Gaps = 212/680 (31%)
Query: 83 SCVSIIEGSQPKVIENSEGART---TPSVIAYQENGEILVGAPAKRQA-------VTNPK 132
I+ + ++N + S+++ +E I++ A ++ +
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 133 NTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKM 192
+ KF E+ ++ + YK ++ + Q ++ +M
Sbjct: 77 EMVQ--------KFVEEVLRIN-----YK---------FLM---SPIKTEQRQPSMMTRM 111
Query: 193 KKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFGLDK 252
D L +ND Q A V R L L
Sbjct: 112 YIEQRDRL--------------YNDNQV--------FAKYNVSR---LQPYLKLRQAL-L 145
Query: 253 SGKSDRNIVVYDLGG-G----TFDVSIIEIADVDGEKQFEVLSTNGDTF---LGGEDFDQ 304
+ +N+++ + G G DV + + + F L + +
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDV----CLSYKVQCKM-----DFKIFWLNLKNCNSPE 196
Query: 305 RIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPV 364
+++ + +I+ + S IK + EL ++ ++PY
Sbjct: 197 TVLEMLQKLLYQIDP-NWTSRSDHSSNIKLRIHSIQAEL---RRLLKSKPY--------- 243
Query: 365 HLNLKITRAKLELLV-DEL-ITRTIEP----CRIAI--KDAGIKVSDINDIILVGGMTRM 416
LLV + + C+I + + V+D L T
Sbjct: 244 ------ENC---LLVLLNVQNAKAWNAFNLSCKILLTTRFKQ--VTD----FLSAATTTH 288
Query: 417 PKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSGDRKDL--LLLDVTPLSLGIETM 474
+ PDE ++ L +DL +L P L I
Sbjct: 289 ISLDHHSMTL---------TPDEVKSLLL----KYLDCRPQDLPREVLTTNPRRLSI--- 332
Query: 475 GGIMTKMIKKNTTIPT-------KFSQVFSTAEDNQ-PAVTVKVYQGEREMVSGNKILGE 526
I + T K + + ++ + PA K++ L
Sbjct: 333 --IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR----------LSV 380
Query: 527 FNLEG--IPPALRGI----PQIEVTFDIDANGILHVTAKDKKTGKENKITIKANSGLTEE 580
F IP L + + LH + +K KE+ I+I + E
Sbjct: 381 FP-PSAHIPTILLSLIWFDVIKSDVMVVVNK--LHKYSLVEKQPKESTISI---PSIYLE 434
Query: 581 EIKKMVQSAEANAEEDKRL-RELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYD 639
K+ E + L R + + N I + ++ SD D
Sbjct: 435 LKVKL--------ENEYALHRSIVDHYN--------------IPKTFD--SDDLIPPYLD 470
Query: 640 QY-----GHAGIDPNMSGSSASAEASNFADAFGDIFGDI-FGSNRDR-DNNNKGSNG--- 689
QY GH ++ E F +F D F + R D+ ++G
Sbjct: 471 QYFYSHIGH-----HLKN----IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521
Query: 690 ---KDLR-YNLEITLEQAAY 705
+ L+ Y I Y
Sbjct: 522 NTLQQLKFYKPYICDNDPKY 541
Score = 66.0 bits (160), Expect = 5e-11
Identities = 86/645 (13%), Positives = 187/645 (28%), Gaps = 216/645 (33%)
Query: 396 DAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSGD 455
DA + D D+ Q+ K K +I D + A+ G+
Sbjct: 27 DAFVDNFDCKDV------------QDMPKSILSK---EEI--DHIIMSKDAVSGT----- 64
Query: 456 RKDLLLLDVTPLSLGIETMGGIMTKMIKKNTT-IPTKFSQVFSTAEDNQPAVTVKVYQGE 514
L L LS E + + ++++ N + + E QP++ ++Y +
Sbjct: 65 ---LRLFWTL-LSKQEEMVQKFVEEVLRINYKFLMSPIK-----TEQRQPSMMTRMYIEQ 115
Query: 515 RE-MVSGNKILGEFNLEGIPP--ALR-GIPQIEVTFDIDANGILH------------VTA 558
R+ + + N++ ++N+ + P LR + ++ ++ ++
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV----LIDGVLGSGKTWVALDVC 171
Query: 559 KDKKTGK--ENKIT-IKANSGLTEEEIKKMVQ------------------SAEANAEEDK 597
K + KI + + + E + +M+Q + + +
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 598 -RLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSAS 656
LR L +S+ + L+ VL + + +
Sbjct: 232 AELRRLLKSKPYENCLL--------------VLLN-----VQN----------------- 255
Query: 657 AEASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSW 716
+ +AF ++ I + R + + S I+L+ +
Sbjct: 256 ---AKAWNAF-NLSCKILLTTRFKQVTDFLSAAT----TTHISLDHHSMTLTPD---EVK 304
Query: 717 DICKSCYGNGAKK------GTSPISCFTCSGQGQVRMQQGFFSIQQ----TCPKCQGAGK 766
+ + T+P S + ++ G + C K +
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNP---RRLSIIAE-SIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 767 VIPHPCLDCNGIGRIKRN-KTL-----EVKIPAG----------------IENNMRIRST 804
L+ ++ L IP + N + S
Sbjct: 361 S----SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416
Query: 805 GNGEP-----GLNGGSNGNLYIEIHIKPHKVFERDGDDLH------YEMPISFSTAALGG 853
+P + +Y+E+ +K + LH Y +P +F + L
Sbjct: 417 VEKQPKESTISIPS-----IYLELKVKL-----ENEYALHRSIVDHYNIPKTFDSDDLI- 465
Query: 854 EIEAPTLNGKAFFVIP------EGTQSGKIFR--------LRGKGIKNIRSSIPGDLFCH 899
P L+ + I E + +FR L K IR
Sbjct: 466 ---PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK----IRHDSTAWNASG 518
Query: 900 VTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRTKTVLNKVKNF 944
+ T QL Y+ + ++P+ + ++N + +F
Sbjct: 519 SILNTLQQLKFYKPYI------------CDNDPKYERLVNAILDF 551
Score = 36.8 bits (84), Expect = 0.044
Identities = 53/428 (12%), Positives = 116/428 (27%), Gaps = 122/428 (28%)
Query: 34 KKIKQPLICKTLIFELKLNLKILDEDLKRILHARRIMSKIIGIDLGTTNSCVSIIEGSQP 93
CK + K L E++ I+ ++ +S + + + Q
Sbjct: 27 DAFVDNFDCKDVQDMPKSILS--KEEIDHIIMSKDAVSGTLRL--------FWTLLSKQE 76
Query: 94 KVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEKEVQK 153
++++ + N + L+ Q + +Y +R R +N+ +V
Sbjct: 77 EMVQKFVEE-------VLRINYKFLMSPIKTEQRQPSMMTRMYIEQR--DRLYNDNQV-- 125
Query: 154 DISLMPY---------KIVKA---DNGDAWISVRGKK------LAPPQISAEVLRKMKKT 195
Y K+ +A + + G +A +V K
Sbjct: 126 ---FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA-----LDVCLSYK-- 175
Query: 196 AEDYLGGEI----------TEAVITVPAYFNDAQRQATKD--AGRIAGLEVKRIINEPTA 243
+ + +I E V+ + Q + + +K I+ A
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEM---LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 244 AALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFE----VLSTNGDT---- 295
K + ++V +V + + F +L T
Sbjct: 233 ELRRLLKSKPYE--NCLLVLL------NVQNAKAWNA-----FNLSCKILLTTRFKQVTD 279
Query: 296 FLGGEDFDQRIIDYILDEFNK-------INGIDLRKDSIALQRIKAS-------AERAKI 341
FL +D+ + +D R + + + + AE +
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 342 ELS---------SSKQTEINEPYIAMSNGAPVHL------------NLKITRAKLELLVD 380
L+ K T I E +++ P + I L L+
Sbjct: 340 GLATWDNWKHVNCDKLTTIIE--SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397
Query: 381 ELITRTIE 388
++I +
Sbjct: 398 DVIKSDVM 405
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon,
chaperone; NMR {Homo sapiens}
Length = 99
Score = 66.2 bits (162), Expect = 2e-13
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 621 KIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASAEASN 661
++ EAYEVLSD KR IYD+YG G+ +G S + S
Sbjct: 48 EVAEAYEVLSDKHKREIYDRYGREGLTGTGTGPSRAEAGSG 88
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Length = 329
Score = 71.6 bits (175), Expect = 2e-13
Identities = 44/330 (13%), Positives = 95/330 (28%), Gaps = 70/330 (21%)
Query: 155 ISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYL-------------- 200
I + + + I + GK+ + E + KT +
Sbjct: 42 IYNLEDGYIDIEGNSHKIELDGKEYLIGEQGVEDSSETSKTNLIHKLAAYTAITQVLDSN 101
Query: 201 GGEITEAVITVPA--YFNDAQRQATKDA------------GRIAGLEVKRIINEPTAAAL 246
+ V+ P N ++ +D + E+ I + + +
Sbjct: 102 KNNKVQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITIKAEGSGV 161
Query: 247 AFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRI 306
F ++ K ++N+ V D GG S+ S G +D R+
Sbjct: 162 LFLEQENFK-NKNVAVIDFGGLNMGFSLY-------RNCVVNPSERFIEEHGVKDLIIRV 213
Query: 307 IDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHL 366
D +N +L + A + + E+ + T I +
Sbjct: 214 G----DALTDLNNGNLITNEQAESALNNGYMKKGGEIDTESSTVIKK------------- 256
Query: 367 NLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEF 426
E + + I I+ G K+ ++ +I +GG T+ ++E++ +
Sbjct: 257 -------VKEKFLKDAIK--------LIEKRGFKLDQLDSLIFIGGTTQK--LKEQISKT 299
Query: 427 FGKDPRRDINPDEAVAVGAAIQGSVLSGDR 456
+ + N G +
Sbjct: 300 YPNNSIITNNSQWTTCEGLYKVAVAKYCIQ 329
>3js6_A Uncharacterized PARM protein; partition, segregation, filament,
unknown function; 1.95A {Staphylococcus aureus}
Length = 355
Score = 71.6 bits (175), Expect = 2e-13
Identities = 53/409 (12%), Positives = 117/409 (28%), Gaps = 88/409 (21%)
Query: 70 MSK--IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAY-QENGEILVGAPAKRQ 126
MS ++ +D G V + VI PS I L G +
Sbjct: 1 MSNVYVMALDFGNGF--VKGKINDEKFVI---------PSRIGRKTNENNQLKGFVDNKL 49
Query: 127 AVTNPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISA 186
V+ + L+ + K N + +
Sbjct: 50 DVSEFIINGNNDEVLLFGN---------------DLDKTTNTGKDTASTNDRYDIKSFKD 94
Query: 187 EVLRKMKKTAEDYLGGEITEAVIT---VPAYFNDAQRQATKDAGRIAGLEVK-------- 235
V + A + + + T D Q + K + +E+
Sbjct: 95 LVECSIGLLAREVPEEVVNVVIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINV 154
Query: 236 ---RIINEPTAAALAFGLDKSGK----SDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEV 288
+I+ +P L ++ ++ V D G GT + + E+ F +
Sbjct: 155 KGVKIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDTYQNMKRVEEESFVI 214
Query: 289 LSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQ 348
G DF +RI ++ + SI + I+ E + +L+
Sbjct: 215 N-------KGTIDFYKRIASHVSKKSEGA--------SITPRMIEKGLEYKQCKLNQKTV 259
Query: 349 TEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDII 408
+ + + + + L++E+++ + ++ I+ II
Sbjct: 260 IDFKDEF----------------YKEQDSLIEEVMS--------NFEITVGNINSIDRII 295
Query: 409 LVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSGDRK 457
+ GG + + + ++ + + + G G +L +
Sbjct: 296 VTGGGANI--HFDSLSHYYSDVFEKADDSQFSNVRGYEKLGELLKNKVE 342
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion;
HET: ATP; 2.20A {Thermus thermophilus}
Length = 377
Score = 68.7 bits (168), Expect = 3e-12
Identities = 62/398 (15%), Positives = 129/398 (32%), Gaps = 86/398 (21%)
Query: 71 SKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTN 130
+ +G+++G + + + G+ P + + +R TP + V
Sbjct: 13 VEALGLEIGASALKLVEVSGNPPAL--KALASRPTPPGLL-------------MEGMVAE 57
Query: 131 PKNTIYAAKRLIGR-KFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQIS-AEV 188
P K L+ + ++ V V A + A I + + P++ E+
Sbjct: 58 PAALAQEIKELLLEARTRKRYV-----------VTALSNLAVIL---RPIQVPKMPLKEM 103
Query: 189 LRKMKKTAEDYLGGEITEAVI--TVPAYFNDAQR----------------QATKDAGRIA 230
++ AE Y+ I E V+ ++ Q +A R A
Sbjct: 104 EEAVRWEAERYIPFPIDEVVLDFAPLTPLSEVQEGEQVQVMVAAARQEAVAGVLEALRGA 163
Query: 231 GLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLS 290
GL + +P A + + DR +V D+G + + ++ +
Sbjct: 164 GLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLR----GDKPLA---- 215
Query: 291 TNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTE 350
L G+DF + I + AE K +
Sbjct: 216 -VRVLTLSGKDFTEAIARSFNLDLLA-------------------AEEVKRTYGMATLPT 255
Query: 351 INEPYIAMSNGAPVHLNLKITRAKLELLVDEL---ITRTIEPCRIAIKDAGIKVSDINDI 407
+E + + + + ++ EL + R++E R ++ +
Sbjct: 256 EDEELLLDFDAERERYSPGRIYDAIRPVLVELTQELRRSLEFFR-----IQLEEASPEVG 310
Query: 408 ILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGA 445
L+GG +++ + + + G + +NP EAVAV
Sbjct: 311 YLLGGGSKLRGLASLLTDTLGVNLEP-VNPWEAVAVDP 347
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 112
Score = 62.5 bits (152), Expect = 5e-12
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 621 KIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASAEASNFADAFGDIFG 671
K+++A E+L++ E R YD + + + A ++ G G
Sbjct: 65 KLQKAKEILTNEESRARYDHWRRSQMSMPFQQWEA---LNDSVKTSGPSSG 112
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 88
Score = 61.2 bits (149), Expect = 8e-12
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 622 IKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASA 657
I EAYE LSD+ +R YD GH+ S S+
Sbjct: 52 IAEAYETLSDANRRKEYDTLGHSAFTSGKGQSGPSS 87
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix
motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 92
Score = 59.6 bits (145), Expect = 3e-11
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 621 KIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASA 657
+ EAYEVLSDS+KR +YD+ G S S+
Sbjct: 55 LVSEAYEVLSDSKKRSLYDRAGCDSWRAGGGASGPSS 91
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural
genomics, PSI-2, protein structure initiative; 1.25A
{Saccharomyces cerevisiae}
Length = 92
Score = 58.9 bits (143), Expect = 6e-11
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 622 IKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSAS 656
I EA+E+L+D +KR IYDQYG
Sbjct: 51 ISEAFEILNDPQKREIYDQYGLEAARSGGPSFGPG 85
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 109
Score = 59.0 bits (143), Expect = 9e-11
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 622 IKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASAEASNFADAFG 667
I A+ +L+D+ KR IYD+YG G+ N F
Sbjct: 63 INNAHAILTDATKRNIYDKYGSLGLYVAEQFG-----EENVNTYFV 103
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain,
all helix protein, chaperone, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 58.2 bits (141), Expect = 1e-10
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 622 IKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASA 657
I +AY VL + R YD+ + D GS S+
Sbjct: 63 ISQAYVVLGSATLRRKYDRGLLSDEDLRGPGSGPSS 98
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 77
Score = 56.8 bits (138), Expect = 2e-10
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 621 KIKEAYEVLSDSEKRIIYDQYGHAGIDPN 649
+I EAY+VLSD KR I+D+YG G+ +
Sbjct: 47 EIAEAYDVLSDPRKREIFDRYGEEGLKGS 75
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 82
Score = 56.5 bits (137), Expect = 3e-10
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 622 IKEAYEVLSDSEKRIIYDQYGHAGID 647
+ EAYEVLSD++KR IYD+YG
Sbjct: 56 VAEAYEVLSDAKKRDIYDRYGSGPSS 81
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain,
chaperone; NMR {Homo sapiens}
Length = 155
Score = 58.7 bits (142), Expect = 3e-10
Identities = 14/117 (11%), Positives = 37/117 (31%), Gaps = 28/117 (23%)
Query: 578 TEEEIKKMVQSAEANAEEDKRLRELAES----RNHGESLIHSTKKS----LKIKEAYEVL 629
++K+ ++L + + + ++ ++I +A+++L
Sbjct: 23 NISDLKQKY-------------QKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKIL 69
Query: 630 SDSEKRIIYDQYGHAGIDPNMSGSSASAEASNFADAFGDI-------FGDIFGSNRD 679
+ E + YD N+ A + GD G + ++D
Sbjct: 70 GNEETKREYDLQRCEDDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCRCGGKYSVSKD 126
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ,
structural protein; 2.10A {Thermotoga maritima} SCOP:
c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Length = 344
Score = 61.7 bits (151), Expect = 3e-10
Identities = 95/384 (24%), Positives = 145/384 (37%), Gaps = 138/384 (35%)
Query: 69 IMSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAY-QENGEIL-VGAPAKRQ 126
++ K IGIDLGT N+ V + G K I +E PSVIA GEIL VG
Sbjct: 1 MLRKDIGIDLGTANTLV-FLRG---KGIVVNE-----PSVIAIDSTTGEILKVGL----- 46
Query: 127 AVTNPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISA 186
AK +IG+ P I A
Sbjct: 47 ----------EAKNMIGK-----------------------------------TPATIKA 61
Query: 187 EVLRKMKK--TAEDYLGGEITEA--------------------VITVPAYFNDAQRQATK 224
+R M+ A DY + VI VP D +R+A
Sbjct: 62 --IRPMRDGVIA-DY---TVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAIL 115
Query: 225 DAGRIAGLEVKRIINEPTAAALAFGLD---KSGKSDRNIVVYDLGGGTFDVSIIEIADVD 281
DAG AG +I EP AAA+ L+ SG N+VV D+GGGT +V++I + +
Sbjct: 116 DAGLEAGASKVFLIEEPMAAAIGSNLNVEEPSG----NMVV-DIGGGTTEVAVISLGSI- 169
Query: 282 GEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKI 341
V + + G++ D+ I+ Y+ + + G + +AER KI
Sbjct: 170 ------VTWES--IRIAGDEMDEAIVQYVRETYRVAIG-------------ERTAERVKI 208
Query: 342 ELSSSKQTEINEPYIA------MSNGAPVHLNLKITRAKLELLVDELITRTIEPCRIAIK 395
E+ + ++ N+ +S G P L + ++ + ++ +E +++
Sbjct: 209 EIGNVFPSKENDELETTVSGIDLSTGLPR--KLTLKGGEVREALRSVVVAIVE----SVR 262
Query: 396 DAGIK-----VSDIND--IILVGG 412
K VSDI + I L GG
Sbjct: 263 TTLEKTPPELVSDIIERGIFLTGG 286
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 78
Score = 55.3 bits (134), Expect = 7e-10
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 622 IKEAYEVLSDSEKRIIYDQYGHAGID 647
I AY VLS+ EKR YDQ+G
Sbjct: 52 IGTAYAVLSNPEKRKQYDQFGSGPSS 77
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.4 bits (151), Expect = 7e-10
Identities = 81/493 (16%), Positives = 159/493 (32%), Gaps = 200/493 (40%)
Query: 38 QPLICKTLIFELKLNLKILDEDLKRILHARRIMSKIIGIDLGTTNSCVSIIEGSQPKVIE 97
L+ LI + L E ++ L A ++ ++ G+++ + +E
Sbjct: 181 HVLV-GDLIKFSA---ETLSELIRTTLDAEKVFTQ--GLNIL--------------EWLE 220
Query: 98 NSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTI------YAAKRLIGRKFNEKEV 151
N TP + L+ P ++ P + +L+G F E+
Sbjct: 221 NPS---NTPDK-------DYLLSIP-----ISCPLIGVIQLAHYVVTAKLLG--FTPGEL 263
Query: 152 QKDIS---------LMPYKIVKADNGDA-------------WISVRGKKLAPPQ-ISAEV 188
+ + + I + D+ ++ +I VR + P + +
Sbjct: 264 RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSI 323
Query: 189 LRKMKKTAEDYL-GGEITEAVITVPAY-FNDAQRQATKDAGRIAGL---EVKRIINEPTA 243
L ED L E VP+ + I+ L +V+ +N+
Sbjct: 324 L-------EDSLENNE------GVPSPMLS------------ISNLTQEQVQDYVNK--- 355
Query: 244 AALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFD 303
+ + + +EI+ V+G K V+S G
Sbjct: 356 ------TNSHLPAGKQ---------------VEISLVNGAKNL-VVS--GPP-------- 383
Query: 304 QRIIDYILDEFNKINGIDLRKDSIALQRIKASA--ERAKIELSSSKQTEINEPYIAMSNG 361
L ++ L++ KA + ++++I S K N ++ ++
Sbjct: 384 ----------------QSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNR-FLPVA-- 424
Query: 362 APVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDIND----------II--L 409
+P H +L + A +L+ +L+ + KD I V D D I +
Sbjct: 425 SPFHSHL-LVPAS-DLINKDLVKNNVS---FNAKDIQIPVYDTFDGSDLRVLSGSISERI 479
Query: 410 VGGMTRMPKVQ-EKVKEF-------FGKDPRRDINPDEAVAVGA----AIQGS----VLS 453
V + R+P V+ E +F FG P A +G G+ +++
Sbjct: 480 VDCIIRLP-VKWETTTQFKATHILDFG--------PGGASGLGVLTHRNKDGTGVRVIVA 530
Query: 454 GDRKDLLLLDVTP 466
G LD+ P
Sbjct: 531 GT------LDINP 537
Score = 54.3 bits (130), Expect = 2e-07
Identities = 107/633 (16%), Positives = 198/633 (31%), Gaps = 206/633 (32%)
Query: 202 GEITEAVITVPA--YFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRN 259
G + E V+ VP +F +Q Q + +I+ EPT F D +
Sbjct: 14 GSL-EHVLLVPTASFFIASQLQE----------QFNKILPEPTEG---FAADDEPTTPAE 59
Query: 260 IVVYDLGGGTFDVSIIEIADVDGEKQF-EVLSTN----GDTFLGGEDFDQRIIDYILDEF 314
+V LG + + + + QF +VL+ + +L G D I + +
Sbjct: 60 LVGKFLG---Y---VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND-----IHALAAKL 108
Query: 315 NKINGIDLRKDSIALQ---RIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKIT 371
+ N L K ++ + A+R + S+S A+ G
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFR------AVGEG---------- 152
Query: 372 RAKL----------ELLVDEL--ITRTIEPCRIAIKDAGIKVSDINDIILVGGMT--RMP 417
A+L + +EL + +T + D+I T +
Sbjct: 153 NAQLVAIFGGQGNTDDYFEELRDLYQTYHVL-------------VGDLIKFSAETLSELI 199
Query: 418 KVQEKVKEFFGK---------DPRRDINPDEAVAVGAAIQGSV-LSGDRKDLLLL---DV 464
+ ++ F + +P PD+ + I S L G ++ L V
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENP--SNTPDKDYLLSIPI--SCPLIG----VIQLAHYVV 251
Query: 465 TPLSLGIETMGGIMTKMIKKNTT----IPTKFSQVFSTAEDNQP-------AVTVKVYQG 513
T LG G + +K T + T + + + + A+TV + G
Sbjct: 252 TAKLLGFTP--GELRSYLKGATGHSQGLVT--AVAIAETDSWESFFVSVRKAITVLFFIG 307
Query: 514 ER------------EMVSGNKILGEFNLEGIP-PAL--RGIPQIEVTFDIDA-NGILHVT 557
R ++ + EG+P P L + Q +V ++ N L
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENN----EGVPSPMLSISNLTQEQVQDYVNKTNSHLP-- 361
Query: 558 AKDKKTGKENKITIK-ANSGLTEEEIKKMVQS--AEANAEEDKRLRELAESRNHGESLIH 614
++ I N K +V S ++ + LR+ +S I
Sbjct: 362 -------AGKQVEISLVNGA------KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP 408
Query: 615 STKKSLKIKEAY---------EVLSDSEKRIIYDQYGHAGIDPNMSGSSASAEASNFADA 665
+++ LK + +L + I D + ++ S A +
Sbjct: 409 FSERKLKFSNRFLPVASPFHSHLLVPASDLINKD----------LVKNNVSFNAKDIQIP 458
Query: 666 FGDIFGDIFGSNRDRDNNNKGSNGKDLR-YNLEIT--LEQAAYGFNTSIRVP-SWDICKS 721
++ D F +G DLR + I+ + IR+P W+
Sbjct: 459 ---VY-DTF-------------DGSDLRVLSGSISERIVDCI------IRLPVKWETTTQ 495
Query: 722 -------CYGNGAKKGTSPISCFTCSGQGQVRM 747
+G G G ++ G G VR+
Sbjct: 496 FKATHILDFGPGGASGLGVLTHRNKDGTG-VRV 527
Score = 51.6 bits (123), Expect = 1e-06
Identities = 48/312 (15%), Positives = 90/312 (28%), Gaps = 112/312 (35%)
Query: 176 GKKL-APPQISAEVLRKMKKTAEDYLGGEITEAVITVPA----YFNDAQRQA-------- 222
G L + + +V + +D G I + VI P +F + +
Sbjct: 1632 GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAM 1691
Query: 223 ---TKDAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDR--N----IVVYDLGGGTFDVS 273
T G++ ++ + INE + + F +K G + +
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHSTS-YTFRSEK-GLLSATQFTQPALTL----------- 1738
Query: 274 IIEIADVDGEKQFEVLSTNG-----DTFLG---GEDFDQRIIDY--------ILDEFNKI 317
+E A FE L + G TF G GE Y ++
Sbjct: 1739 -MEKA------AFEDLKSKGLIPADATFAGHSLGE--------YAALASLADVMS-I--- 1779
Query: 318 NGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLEL 377
+ + + R + + E+ M P + ++ L+
Sbjct: 1780 ------ESLVEVVFY-----RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQY 1828
Query: 378 LVDELITRTIEPCRIA----------IKDAG--------------IKVSDINDIILVGGM 413
+V+ + RT I AG IK+ I+ I L +
Sbjct: 1829 VVERVGKRTGWLVEIVNYNVENQQYVA--AGDLRALDTVTNVLNFIKLQKIDIIELQKSL 1886
Query: 414 TRMPKVQEKVKE 425
+ E+V+
Sbjct: 1887 S-----LEEVEG 1893
Score = 37.3 bits (86), Expect = 0.033
Identities = 41/248 (16%), Positives = 71/248 (28%), Gaps = 82/248 (33%)
Query: 448 QGSVLSG----------------DRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIPTK 491
QGS G +R D +T G + ++ N P
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWNRADNHFK---------DTYGFSILDIVINN---PVN 1671
Query: 492 FSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDIDAN 551
+ F + ++ + M+ + G+ E I + TF +
Sbjct: 1672 LTIHFGGEKGK------RIRENYSAMIFETIVDGKLKTEKIFKEI-NEHSTSYTFRSE-K 1723
Query: 552 GILHVTAKDKKTGKENKIT---IKANSGLTEEEIKK--MVQSAEANAEEDKRLRELAESR 606
G+L T + T + E++K ++ + A
Sbjct: 1724 GLLSAT--------QF--TQPALTLMEKAAFEDLKSKGLIPADATFA------------- 1760
Query: 607 NH--GE-SLIHSTKKSLKIKEAYEVLS------------DSEKRIIYDQYGHAGIDPNMS 651
H GE + + S + I+ EV+ D R YG I+P
Sbjct: 1761 GHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGR---SNYGMIAINPGRV 1817
Query: 652 GSSASAEA 659
+S S EA
Sbjct: 1818 AASFSQEA 1825
Score = 34.6 bits (79), Expect = 0.22
Identities = 20/140 (14%), Positives = 47/140 (33%), Gaps = 44/140 (31%)
Query: 11 KSKVKKKIKQSKV---KKKIKQS----------------KVKKKIKQPLICKTLIF---E 48
K+K + QS++ ++K+K S I + L+ + F +
Sbjct: 395 KAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD 454
Query: 49 LKL---------NLKILDEDLKRILHARRIMSKIIGIDLGTTNSCVSIIE-------GSQ 92
+++ +L++L + + I+ + + T I++ G
Sbjct: 455 IQIPVYDTFDGSDLRVLSGSISERI-VDCIIRLPVKWETTTQFKATHILDFGPGGASGLG 513
Query: 93 PKVIENSEG--ARTTPSVIA 110
N +G R ++A
Sbjct: 514 VLTHRNKDGTGVRV---IVA 530
Score = 30.8 bits (69), Expect = 2.7
Identities = 20/117 (17%), Positives = 37/117 (31%), Gaps = 25/117 (21%)
Query: 58 EDLKRILHAR-RIMSKIIGID-LGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENG 115
E L ++ R M + D LG +N + I + + E + + + G
Sbjct: 1780 ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVG-KRTG 1838
Query: 116 EILVGAPAKRQAV-TNPKNTIY-------AAKRLIGRKFNEKEVQKDISLMPYKIVK 164
++ + V N +N Y A + V I L I++
Sbjct: 1839 WLV-------EIVNYNVENQQYVAAGDLRALDTVT-------NVLNFIKLQKIDIIE 1881
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 54.6 bits (132), Expect = 1e-09
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 19/74 (25%)
Query: 578 TEEEIKKMVQSAEANAEEDKRLRELAES----RNHGESLIHSTKKSLKIKEAYEVLSDSE 633
+++EIKK +LA+ N + + +K ++ EAYEVLSD
Sbjct: 20 SQKEIKKA-------------YYQLAKKYHPDTNKDDP--KAKEKFSQLAEAYEVLSDEV 64
Query: 634 KRIIYDQYGHAGID 647
KR YD YG
Sbjct: 65 KRKQYDAYGSGPSS 78
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular
chaperone, NPPSFA; NMR {Mus musculus}
Length = 88
Score = 54.3 bits (131), Expect = 2e-09
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 622 IKEAYEVLSDSEKRIIYDQYGHAGID 647
I +AYE+LS+ EKR YD YG
Sbjct: 62 ISKAYEILSNEEKRTNYDHYGSGPSS 87
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 59.4 bits (143), Expect = 5e-09
Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 10/111 (9%)
Query: 617 KKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASAEASNFADAFGDIFGDIFGS 676
LKI AYEVL D + R YD+YG G++ N G S + D +I
Sbjct: 62 GDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITL 121
Query: 677 NRDRDNNNKGSN----------GKDLRYNLEITLEQAAYGFNTSIRVPSWD 717
R + S G ++L T + A + +R+ + +
Sbjct: 122 ERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVN 172
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural
genomics, PSI-2, Pro structure initiative; 1.68A
{Caenorhabditis elegans}
Length = 109
Score = 54.0 bits (130), Expect = 5e-09
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 587 QSAEANAEEDKRLRELAES----RNHG-ESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQY 641
+ + K R LA R E + + ++ I AYE L D E + YD Y
Sbjct: 25 REEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYY 84
Query: 642 GHAG 645
Sbjct: 85 LDHP 88
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, chaperone; NMR {Mus musculus} SCOP:
a.2.3.1
Length = 94
Score = 52.8 bits (127), Expect = 9e-09
Identities = 12/93 (12%), Positives = 36/93 (38%), Gaps = 18/93 (19%)
Query: 573 ANSGLTEEEIKKMVQ---------SAEANAEEDKR-LRELAES----RNHGESLIHSTKK 618
+SG + +++ ++ AN + K+ ++L + + + ++
Sbjct: 1 GSSGSSGMALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEE 60
Query: 619 SLK----IKEAYEVLSDSEKRIIYDQYGHAGID 647
++ I +A+++L + E + YD
Sbjct: 61 CMQKFIEIDQAWKILGNEETKKKYDLQRSGPSS 93
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone,
APC90013.2, structural genomics, protein structure
initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Length = 73
Score = 51.1 bits (123), Expect = 2e-08
Identities = 15/22 (68%), Positives = 17/22 (77%)
Query: 622 IKEAYEVLSDSEKRIIYDQYGH 643
I +AYEVLSD +KR IYDQ G
Sbjct: 51 ISQAYEVLSDEKKRQIYDQGGE 72
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase
regulat protein complex; 3.10A {Simian virus 40} PDB:
2pkg_C
Length = 174
Score = 53.8 bits (129), Expect = 2e-08
Identities = 8/54 (14%), Positives = 15/54 (27%), Gaps = 11/54 (20%)
Query: 621 KIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASAEASNFADAFGDIFGDIF 674
K+ Y+ + D K +G + FA + I+
Sbjct: 54 KMNTLYKKMEDGVKYAHQPDFGGFWDATEV-----------FASSLNPGVDAIY 96
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein;
3.20A {Simian virus 40} SCOP: a.2.3.1
Length = 114
Score = 50.6 bits (121), Expect = 8e-08
Identities = 8/63 (12%), Positives = 17/63 (26%), Gaps = 2/63 (3%)
Query: 621 KIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASAEASNFADA-FGDIFGD-IFGSNR 678
K+ Y+ + D K +G + + ++F S+
Sbjct: 51 KMNTLYKKMEDGVKYAHQPDFGGFWDATEIPTYGTDEWEQWWNAFNEENLFCSEEMPSSD 110
Query: 679 DRD 681
D
Sbjct: 111 DEA 113
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 88
Score = 43.2 bits (102), Expect = 2e-05
Identities = 13/76 (17%), Positives = 22/76 (28%), Gaps = 21/76 (27%)
Query: 576 GLTEEEIKKMVQSAEANAEEDKRLRELAES----RNHGESLIHSTKKSLKIKEAYEVLSD 631
L E E KK++ R L +N + + + ++ L
Sbjct: 27 KLPESERKKII-------------RRLYLKWHPDKNPE-NHDIANEVFKHLQNEINRL-- 70
Query: 632 SEKRIIYDQYGHAGID 647
EK+ DQ
Sbjct: 71 -EKQAFLDQNADRASR 85
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Length = 181
Score = 44.6 bits (105), Expect = 3e-05
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 596 DKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPN 649
K R+L +++H + +++S + +AY L D +R Y ID
Sbjct: 36 RKEYRQLQ-AQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKLLRNIDLT 88
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome;
HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T*
1e4f_T* 4a2b_A*
Length = 419
Score = 46.2 bits (110), Expect = 4e-05
Identities = 34/212 (16%), Positives = 65/212 (30%), Gaps = 43/212 (20%)
Query: 230 AGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQF-EV 288
++ + + A L K DR +VV +LG + + +G
Sbjct: 180 TVKSPFQLKSSLVSTAEGV-LTTPEK-DRGVVVVNLGYNFTGLIAYK----NGVPIKISY 233
Query: 289 LSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQ 348
+ +G + +I + S L +ER I ++
Sbjct: 234 VP------VGMKH----VIKDV---------------SAVLDTSFEESERLIITHGNAVY 268
Query: 349 TEINE---PYIAMSNGAPVHLNLK----ITRAKL-ELLVDELITRTIEPCRIAIKDAGIK 400
++ E Y + K I A+L E++ + I + G
Sbjct: 269 NDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHARLREIM--SKSKKFFREVEAKIVEEGEI 326
Query: 401 VSDINDIILVGGMTRMPKVQEKVKEFFGKDPR 432
++L GG ++P++ E E F R
Sbjct: 327 -GIPGGVVLTGGGAKIPRINELATEVFKSPVR 357
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 41.4 bits (97), Expect = 0.002
Identities = 48/353 (13%), Positives = 94/353 (26%), Gaps = 74/353 (20%)
Query: 393 AIKDAGIKVSDIN----DIILVG-----GMTRMPKVQEKVKEFFGKDPRRD-------IN 436
A +GI + VG GM + ++ K+ F +P ++ IN
Sbjct: 1023 AFIASGITDPYEMYKYVHVSEVGNCSGSGMGGVSALRGMFKDRFKDEPVQNDILQESFIN 1082
Query: 437 ---------------PDEAVAVGAAIQGSVLSGDRKDLLLL---DV----------TPLS 468
P + VGA + +L + S
Sbjct: 1083 TMSAWVNMLLISSSGPIKTP-VGACATSVESVDIGVETILSGKARICIVGGYDDFQEEGS 1141
Query: 469 LGIETMGGIMTK--MIKKNTTIPTKFSQVFSTAED----NQPAVTVKVYQGEREMVSGNK 522
M + T P + S+ +T + Q A + Q + + G
Sbjct: 1142 FEFGNMKATSNTLEEFEHGRT-PAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVP 1200
Query: 523 ILGEFNLEG---------IPPALRGIPQI--EVTFDIDANGILHVTAKDKKTGKENKITI 571
I G + +P +GI E + K+ + I
Sbjct: 1201 IYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQI 1260
Query: 572 KANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEV-LS 630
K E +K + + + + L E + S ++ + + +
Sbjct: 1261 KDWVENELEALKLEAEEIPSEDQNE----FLLERTREIHNEAESQLRAAQQQWGNDFYKR 1316
Query: 631 DSEKRIIYDQYGHAGIDP------NMSGSSASAEASNFADAFGDIFGDIFGSN 677
D + G+ + G+S A N + ++ + S
Sbjct: 1317 DPRIAPLRGALATYGLTIDDLGVASFHGTSTKANDKNESATINEMMKHLGRSE 1369
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 39.7 bits (93), Expect = 0.005
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 617 KKSLKIKEAYEVLSDSEKRIIYDQ 640
KK + I A EVLSD E R +D
Sbjct: 426 KKFIDIAAAKEVLSDPEMRKKFDD 449
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap,
tryptophan RNA-binding attenuation PROT transcription
attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Length = 53
Score = 35.1 bits (80), Expect = 0.006
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 754 IQQTCPKCQGAGKVIPHPCLDCNGIGRI 781
++ TCP C G+G+ P PC C G G I
Sbjct: 8 LETTCPNCNGSGREEPEPCPKCLGKGVI 35
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,,
transferase, structural genomics, PSI-2; 2.00A
{Bifidobacterium adolescentis ATCC15703}
Length = 515
Score = 38.5 bits (90), Expect = 0.010
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 393 AIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVL 452
I+ G I I+L+GG + ++ G D R DE VA+GAA Q + +
Sbjct: 417 LIRSLGAS---ITRILLIGGGAKSEAIRTLAPSILGMDVTR-PATDEYVAIGAARQAAWV 472
Query: 453 SGDRKDL 459
+
Sbjct: 473 LSGETEP 479
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit
protein; transcription regulation; 2.80A {Bacillus
subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Length = 53
Score = 34.3 bits (78), Expect = 0.010
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 754 IQQTCPKCQGAGKVIPHPCLDCNGIGRI 781
++ CPKC+ AG++ PC C+G G I
Sbjct: 8 LEVACPKCERAGEIEGTPCPACSGKGVI 35
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 36.7 bits (84), Expect = 0.016
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 9/65 (13%)
Query: 580 EEIKKMVQSAEANAEEDK-RLRELAES------RNHGESLIHSTKKSLKIKEAYEVLSDS 632
EE +K +Q +A ++ + RE A+ + E + K + +I +
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQ-VEKNKINNRIADK-AFYQQP 149
Query: 633 EKRII 637
+ II
Sbjct: 150 DADII 154
Score = 30.1 bits (67), Expect = 2.7
Identities = 13/103 (12%), Positives = 33/103 (32%), Gaps = 31/103 (30%)
Query: 586 VQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEA-----YEVLSDSEKRIIYDQ 640
+ A+ +E + +R+ E + +K L+ +A + + K+ + +
Sbjct: 74 IAQADRLTQEPESIRKWREEQ----------RKRLQELDAASKVMEQEWREKAKKDLEEW 123
Query: 641 YGH--AGIDPNMSGSSASAEASNFADAFGDIFGDIFGSNRDRD 681
++ N + + +A F D D
Sbjct: 124 NQRQSEQVEKNKINNRIADKA--------------FYQQPDAD 152
>1m1q_A Small tetraheme cytochrome C; atomic structure of oxidized
tetraheme cytochrome C, electron transport; HET: HEM;
0.97A {Shewanella oneidensis mr-1} SCOP: a.138.1.3 PDB:
1m1p_A* 1m1r_A*
Length = 91
Score = 33.2 bits (75), Expect = 0.056
Identities = 15/73 (20%), Positives = 23/73 (31%), Gaps = 7/73 (9%)
Query: 719 CKSCYGNGAKKGTSPIS---CFTCSG-QGQVRMQQGFFSIQQTCPKCQGA--GKVIPHP- 771
C+SC+ +G C +C G ++ C C V P
Sbjct: 15 CESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQKPT 74
Query: 772 CLDCNGIGRIKRN 784
C C+ GR +
Sbjct: 75 CESCHDDGRTSAS 87
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304,
center for structural genomics of infectious diseases,
CSGI; 2.15A {Vibrio cholerae}
Length = 174
Score = 34.9 bits (80), Expect = 0.062
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 615 STKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPN 649
+ +++ +I +AY+ L D +R Y GI+ N
Sbjct: 50 AVQQAAQINDAYQTLKDPLRRAEYLLSLQ-GIEMN 83
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A
{Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Length = 171
Score = 34.6 bits (79), Expect = 0.071
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 615 STKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNM 650
+ ++S I +A++ L R Y H G D
Sbjct: 47 AVQQSATINQAWQTLRHPLMRAEYLLSLH-GFDLAS 81
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 34.3 bits (78), Expect = 0.12
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 13/33 (39%)
Query: 753 SIQQTCPKCQG----------AGKVIPHPCLDC 775
+I TCP+C+ G V+ C C
Sbjct: 19 NIVLTCPECKVYPPKIVERFSEGDVV---CALC 48
>2k3v_A Tetraheme cytochrome C-type; multihaem cytochromes, redox proteins,
electron transport, iron, metal-binding, periplasm,
transport; HET: HEM; NMR {Shewanella frigidimarina}
Length = 86
Score = 32.1 bits (72), Expect = 0.13
Identities = 13/69 (18%), Positives = 21/69 (30%), Gaps = 7/69 (10%)
Query: 719 CKSCYGNGAKKGTSPI---SCFTCSGQG-QVRMQQGFFSIQQTCPKC---QGAGKVIPHP 771
C++C+ +G C +C G ++ C C A
Sbjct: 15 CENCHADGEPSKDGAYEFEQCQSCHGSLAEMDDNHKPHDGLLMCADCHAPHEAKVGEKPT 74
Query: 772 CLDCNGIGR 780
C C+ GR
Sbjct: 75 CDTCHDDGR 83
>1bqb_A Protein (aureolysin); hydrolase, metalloproteinase; 1.72A
{Staphylococcus aureus} SCOP: d.92.1.2
Length = 301
Score = 34.3 bits (78), Expect = 0.15
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 636 IIYDQYGHAGIDPNMSGSSASAEASNFADAFGDIFGDIFGSNR---DRDNNNKGSNGKDL 692
++ + H G+ + ++ ++F D+FG D G G L
Sbjct: 141 VVAHEITH-GVTQQTANLEYKDQSGALNESFSDVFGYFVDDEDFLMGEDVYTPGKEGDAL 199
Query: 693 RY 694
R
Sbjct: 200 RS 201
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural
genomics medical relev protein structure initiative,
PSI-2; 3.00A {Homo sapiens}
Length = 207
Score = 33.5 bits (76), Expect = 0.19
Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 8/61 (13%)
Query: 596 DKRLRELA----ESRNHGESLI---HSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDP 648
R ++L S S K S + +AY+ L R +Y GI+
Sbjct: 63 QHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLY-LLKLHGIEI 121
Query: 649 N 649
Sbjct: 122 P 122
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated
protein RAP1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 90
Score = 31.6 bits (72), Expect = 0.21
Identities = 3/15 (20%), Positives = 5/15 (33%)
Query: 621 KIKEAYEVLSDSEKR 635
+ A L + K
Sbjct: 71 AVVNARTALLKNIKS 85
>1z1n_X Sixteen heme cytochrome; electron transport; HET: NAG NAA HEC;
2.10A {Desulfovibrio gigas}
Length = 560
Score = 34.0 bits (75), Expect = 0.23
Identities = 11/81 (13%), Positives = 18/81 (22%), Gaps = 8/81 (9%)
Query: 705 YGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTC-----SGQGQVRMQQGFF---SIQQ 756
F+ C +C+ G+ C S G +
Sbjct: 305 VAFDHKAHEGFVGNCVTCHHPTQTGGSLAACGVACHTTTGSKDGNFVTTAQSAHQLGVTT 364
Query: 757 TCPKCQGAGKVIPHPCLDCNG 777
+C C C C+
Sbjct: 365 SCVGCHTTQANARKECAGCHA 385
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY
crystallography, neuregulins, heparin-binding, cell CY
signaling protein; HET: NAG NDG; 2.40A {Homo sapiens}
PDB: 3u2p_A*
Length = 617
Score = 34.2 bits (77), Expect = 0.24
Identities = 11/76 (14%), Positives = 17/76 (22%), Gaps = 5/76 (6%)
Query: 718 ICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQ-----QTCPKCQGAGKVIPHPC 772
+ I + VR GF +IQ T I
Sbjct: 344 FLVTGIHGDPYNAIEAIDPEKLNVFRTVREITGFLNIQSWPPNMTDFSVFSNLVTIGGRV 403
Query: 773 LDCNGIGRIKRNKTLE 788
L I + + +
Sbjct: 404 LYSGLSLLILKQQGIT 419
Score = 32.3 bits (72), Expect = 0.88
Identities = 11/61 (18%), Positives = 17/61 (27%), Gaps = 10/61 (16%)
Query: 719 CKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGI 778
C+ SC G+ F C +C + + L C+G
Sbjct: 499 CRRFSRGR----ICIESCNLYDGE------FREFENDSICVECDPQCEKMEDGLLTCHGP 548
Query: 779 G 779
G
Sbjct: 549 G 549
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A
{Caenorhabditis elegans}
Length = 120
Score = 31.8 bits (72), Expect = 0.36
Identities = 8/51 (15%), Positives = 21/51 (41%)
Query: 589 AEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYD 639
+ + S ES + K++++ ++ + +S +K+ I D
Sbjct: 3 SSHHHHHHSSGLVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIED 53
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding,
exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Length = 124
Score = 31.7 bits (71), Expect = 0.44
Identities = 15/67 (22%), Positives = 17/67 (25%), Gaps = 10/67 (14%)
Query: 720 KSCYGNGAKKG------TSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCL 773
C GA I C C G R Q + C C+ H
Sbjct: 23 IICSYCGATDDHYSRHCPKAIQCSKCDEVGHYRSQCPHKWKKVQCTLCKSKK----HSKE 78
Query: 774 DCNGIGR 780
C I R
Sbjct: 79 RCPSIWR 85
Score = 30.5 bits (68), Expect = 0.86
Identities = 10/64 (15%), Positives = 16/64 (25%), Gaps = 6/64 (9%)
Query: 714 PSWDICKSC--YGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHP 771
C C + ++ S + + + C C G G H
Sbjct: 62 WKKVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLPFHTIYCYNCGGKG----HF 117
Query: 772 CLDC 775
DC
Sbjct: 118 GDDC 121
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP:
a.2.3.1 PDB: 1xi5_J
Length = 182
Score = 32.1 bits (72), Expect = 0.44
Identities = 9/62 (14%), Positives = 25/62 (40%), Gaps = 8/62 (12%)
Query: 577 LTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRI 636
+T E++KK+ + A DK ++ +++ +A+ + ++
Sbjct: 129 VTPEQVKKVYRKAVLVVHPDKA--------TGQPYEQYAKMIFMELNDAWSEFENQGQKP 180
Query: 637 IY 638
+Y
Sbjct: 181 LY 182
>2vqx_A Metalloproteinase; thermolysin-like structure, zinc, protease,
hydrolase, metalloprotease; 1.82A {Serratia
proteamaculans}
Length = 341
Score = 32.8 bits (74), Expect = 0.46
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 13/66 (19%)
Query: 641 YGHAGIDPNMSGSSASAEASNFADAFGDIFGDI---FGSNRDRDNNN---------KGSN 688
H G+ + +G +A ++ D+FG + F + D + KG N
Sbjct: 164 LAH-GVTESEAGLIYFQQAGALNESLSDVFGSLVKQFHLKQTADKADWLIGEGLLAKGIN 222
Query: 689 GKDLRY 694
GK LR
Sbjct: 223 GKGLRS 228
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.64
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 7/33 (21%)
Query: 416 MPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQ 448
+ K+Q +K + D P A+A+ A ++
Sbjct: 22 LKKLQASLKLY---AD--DSAP--ALAIKATME 47
Score = 29.5 bits (65), Expect = 2.9
Identities = 7/31 (22%), Positives = 18/31 (58%), Gaps = 8/31 (25%)
Query: 480 KMIKK-NTTIPTKFSQVFSTAEDNQPAVTVK 509
+ +KK ++ +++ A+D+ PA+ +K
Sbjct: 20 QALKKLQASL-----KLY--ADDSAPALAIK 43
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase;
HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Length = 484
Score = 32.2 bits (74), Expect = 0.83
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Query: 393 AIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVL 452
+ GIK + L+GG R ++ + + G+ D A+GAA +
Sbjct: 379 VVHACGIK---PQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARLAQIA 435
Query: 453 SGDRKDL 459
+ K L
Sbjct: 436 ANPEKSL 442
>3dnz_A Thermolysin; hydrolase, metalloproteinase, calcium, metal-binding,
metalloprotease, protease, secreted, zinc, zymogen; HET:
LYS; 1.20A {Bacillus thermoproteolyticus} PDB: 1kjo_A*
1kjp_A* 1kkk_A* 1kl6_A* 1kr6_A* 1kro_A* 1ks7_A* 1kto_A*
1y3g_E* 2whz_A* 2wi0_A* 1kei_A* 3do0_A* 3do1_A* 3do2_A*
3fb0_A 3fbo_A 3fgd_A* 3flf_A* 3fv4_A* ...
Length = 316
Score = 32.0 bits (72), Expect = 0.88
Identities = 14/68 (20%), Positives = 21/68 (30%), Gaps = 11/68 (16%)
Query: 638 YDQYGHA---GIDPNMSGSSASAEASNFADAFGDIFGDIF-----GSNR---DRDNNNKG 686
D H + +G E+ +A DIFG + + D G
Sbjct: 137 IDVVAHELTHAVTDYTAGLIYQNESGAINEAISDIFGTLVEFYANKNPDWEIGEDVYTPG 196
Query: 687 SNGKDLRY 694
+G LR
Sbjct: 197 ISGDSLRS 204
>3euo_A Type III pentaketide synthase; alpha helix, acyltransferase,
transferase; 1.75A {Neurospora crassa} PDB: 3eut_A*
3euq_A*
Length = 379
Score = 31.9 bits (72), Expect = 0.90
Identities = 9/66 (13%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 347 KQTEINEPYIAMSNGAPVHLNLKI--TRAKLELLVDELITRTIEPCRIAIKDAGIKVSDI 404
+ T I++ + P+ + E+ + + + +E R A+ +A + + I
Sbjct: 44 RYTGIDQRSSIGNPDHPLVNKPNPPTVKELHEVFMSDGVPLAVEASRKAMAEARLVPAQI 103
Query: 405 NDIILV 410
++
Sbjct: 104 THMVST 109
>3awk_A Chalcone synthase-like polyketide synthase; type III polyketide
synthase, transferase; 2.00A {Huperzia serrata} PDB:
3awj_A
Length = 402
Score = 31.9 bits (72), Expect = 0.96
Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 6/70 (8%)
Query: 347 KQTEINEPYIAMS------NGAPVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIK 400
++ I + + ++ N + + ++ V E+ E AIK G
Sbjct: 74 DKSGIKKRHFHLTDEILRKNPSICKFKEASLDPRQDIAVLEVPKLAKEAAISAIKQWGQP 133
Query: 401 VSDINDIILV 410
S I ++
Sbjct: 134 KSKITHLVFA 143
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold,
ATPase, electron transfer, ATP/ADP binding; HET: ANP;
1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Length = 276
Score = 31.4 bits (71), Expect = 1.1
Identities = 9/51 (17%), Positives = 21/51 (41%)
Query: 399 IKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQG 449
++ ++++VGG+ R + + + P A+GAA+
Sbjct: 202 KRIGVQRNVVMVGGVARNSGIVRAMAREINTEIIVPDIPQLTGALGAALYA 252
>1u4g_A Elastase, pseudolysin; , inhibition, peptidase family M4,
hydrolase; HET: HPI; 1.40A {Pseudomonas aeruginosa}
SCOP: d.92.1.2 PDB: 1ezm_A* 3dbk_A*
Length = 301
Score = 31.6 bits (71), Expect = 1.2
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 6/64 (9%)
Query: 636 IIYDQYGHAGIDPNMSGSSASAEASNFADAFGDIFGDIF-----GSNRDRDNNNKGSNGK 690
+ + H G SG ++ +AF D+ G+ G N +
Sbjct: 137 VAAHEVSH-GFTEQNSGLIYRGQSGGMNEAFSDMAGEAAEFYMRGKNDFLIGYDIKKGSG 195
Query: 691 DLRY 694
LRY
Sbjct: 196 ALRY 199
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of
helices, viral protein; NMR {Murine polyomavirus} SCOP:
a.2.3.1
Length = 79
Score = 28.8 bits (64), Expect = 1.5
Identities = 2/28 (7%), Positives = 7/28 (25%)
Query: 615 STKKSLKIKEAYEVLSDSEKRIIYDQYG 642
S ++ + + + G
Sbjct: 48 SHALMQELNSLWGTFKTEVYNLRMNLGG 75
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA
binding, RNA binding protein; 1.80A {Thermus
thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s*
1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V
2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W
2wdj_W ...
Length = 110
Score = 29.4 bits (67), Expect = 1.6
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 16/47 (34%)
Query: 580 EEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAY 626
+ K+++SA ANA NH + L +K AY
Sbjct: 45 YFVAKVLESAAANAVN-----------NHDAL-----EDRLYVKAAY 75
>3e1h_A PKSIIINC, putative uncharacterized protein; resorcinolic lipid
synthase, type III PKS, acyltransferase, transferase;
2.58A {Neurospora crassa}
Length = 465
Score = 31.2 bits (70), Expect = 1.7
Identities = 10/66 (15%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 347 KQTEINEPYIAMSNGAPV--HLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDI 404
+ T I++ + P+ N + E+ + + + +E R A+ +A + + I
Sbjct: 73 RYTGIDQRSSIGNPDHPLVNKPNPPTVKELHEVFMSDGVPLAVEASRKAMAEARLVPAQI 132
Query: 405 NDIILV 410
++
Sbjct: 133 THMVST 138
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone,
actin-like ATPase domain, beta/BETA/alpha swiveling
domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP:
c.8.6.1 c.55.1.6 c.55.1.6
Length = 607
Score = 31.0 bits (70), Expect = 1.9
Identities = 18/101 (17%), Positives = 40/101 (39%), Gaps = 5/101 (4%)
Query: 197 EDYLGGEIT-EAVITVPAYFNDAQRQATKDAGRIAG-LEVKRIINEPTAAALAFGLDKSG 254
+ + GE E + + A + Q A ++ L+ + ++ A G +
Sbjct: 346 QGGMAGECAMENAVGMAAMVKADRLQMQVIARELSARLQTEVVVGGVEANMAIAGALTTP 405
Query: 255 KSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDT 295
+ + DLG G+ D +I+ + +G+ L+ G+
Sbjct: 406 GCAAPLAILDLGAGSTDAAIV---NAEGQITAVHLAGAGNM 443
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial
ribosome, large ribosomal subunit, ribosomal R ribosome;
12.10A {Bos taurus} PDB: 3iy9_M
Length = 110
Score = 29.4 bits (67), Expect = 2.0
Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 15/47 (31%)
Query: 580 EEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAY 626
+ IK+++ A+ A +H + +L I E+
Sbjct: 41 KIIKEVLLEAQDMAVR-----------DHN----VEFRSNLYIAEST 72
>1u0m_A Putative polyketide synthase; type III polyketide synthase, PKS,
bacterial, thiolase fold, beta-alpha-beta-alpha fold,
catalytic triad; HET: 15P; 2.22A {Streptomyces
coelicolor} SCOP: c.95.1.2 c.95.1.2
Length = 382
Score = 30.8 bits (70), Expect = 2.4
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 2/82 (2%)
Query: 329 LQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIE 388
+R + + L + T + +I L + ++ E +R
Sbjct: 33 ARRRHTDHPQLPLALRLIENTGVRTRHIVQPI--EDTLEHPGFEDRNKVYEREAKSRVPA 90
Query: 389 PCRIAIKDAGIKVSDINDIILV 410
+ A+ DA + +DI+ II V
Sbjct: 91 VIQRALDDAELLATDIDVIIYV 112
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold,
metal binding protein; HET: ADP; 3.00A {Acidaminococcus
fermentans} SCOP: c.55.1.5
Length = 270
Score = 30.2 bits (68), Expect = 2.5
Identities = 10/45 (22%), Positives = 22/45 (48%)
Query: 405 NDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQG 449
D+++ GG+ + V+ ++E G + + A+GAA+
Sbjct: 210 KDVVMTGGVAQNYGVRGALEEGLGVEIKTSPLAQYNGALGAALYA 254
>1ee0_A 2-pyrone synthase; polyketide synthase, thiolase fold, transferase;
HET: CAA; 2.05A {Gerbera hybrid cultivar} SCOP: c.95.1.2
c.95.1.2 PDB: 1qlv_A
Length = 402
Score = 30.6 bits (69), Expect = 2.6
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 347 KQTEINEPYIAMS------NGAPVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIK 400
++T I + Y+A++ N A+ +L+V + E AI + G+
Sbjct: 66 EKTAIKKRYLALTEDYLQENPTMCEFMAPSLNARQDLVVTGVPMLGKEAAVKAIDEWGLP 125
Query: 401 VSDINDIILV 410
S I +I
Sbjct: 126 KSKITHLIFC 135
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase,
quorum quenching; HET: C6L GOL; 0.95A {Bacillus
thuringiensis serovar kurstakorganism_taxid} PDB:
3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A
Length = 254
Score = 30.1 bits (68), Expect = 2.6
Identities = 9/41 (21%), Positives = 12/41 (29%), Gaps = 11/41 (26%)
Query: 393 AIKDAGIKVSDINDIIL-------VGGMTRMPK----VQEK 422
+K G + D+ II GG VQ
Sbjct: 90 ILKRVGYEPDDLLYIISSHLHFDHAGGNGAFTNTPIIVQRT 130
>3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein,
metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium
loti} PDB: 3aj0_A
Length = 274
Score = 30.4 bits (69), Expect = 2.7
Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 12/53 (22%)
Query: 393 AIKDAGIKVSDINDIIL-------VGGMTRMPK----VQEK-VKEFFGKDPRR 433
A+ G++ DI+ ++ GG P V + P
Sbjct: 78 ALGLLGLEPRDIDVVVNSHFHFDHCGGNKYFPHAKKICHRSEVPQACNPQPFE 130
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_9
Length = 189
Score = 30.1 bits (67), Expect = 2.8
Identities = 4/57 (7%), Positives = 13/57 (22%), Gaps = 7/57 (12%)
Query: 563 TGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRL----RELAESRNHG-ESLIH 614
G+ G + ++K + + L + + +
Sbjct: 9 EGET--KIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVTDDVTYY 63
>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S
2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S
2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ...
Length = 110
Score = 28.6 bits (65), Expect = 2.9
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 16/47 (34%)
Query: 580 EEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAY 626
+KK+++SA ANAE N G LK+ + +
Sbjct: 45 VLVKKVLESAIANAEH-----------NDGAD-----IDDLKVTKIF 75
>3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC, target
10395N, triphosphohydro PSI-2, protein structure
initiative; 1.95A {Leeuwenhoekiella blandensis}
Length = 444
Score = 30.4 bits (69), Expect = 3.3
Identities = 19/148 (12%), Positives = 42/148 (28%), Gaps = 31/148 (20%)
Query: 187 EVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAAL 246
E + K E+ L G +++I Y + D ++ ++RI N
Sbjct: 317 ESVDTFMKYEEEILAGTFDQSLIDKSNY-----QAQITDIINLS---IERIYNSREVIEK 368
Query: 247 AFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQR- 305
++ L + + + D + + +
Sbjct: 369 EI------AGYE--ILSTL----LEARCRALDNNDTHYNQLIQQLLAPNDHSEKSLYENL 416
Query: 306 --IIDYI--------LDEFNKINGIDLR 323
I + L + KI G+D++
Sbjct: 417 IQICAEVSTMTDGKALRNYKKIKGLDVK 444
>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L*
1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q*
2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P*
1pnu_Q 1pny_Q 1vor_T ...
Length = 134
Score = 28.7 bits (65), Expect = 3.8
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 16/47 (34%)
Query: 580 EEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAY 626
E + K++ SA+ANA N + L +KEAY
Sbjct: 66 EPVAKVLNSAKANALH-----------NDEML-----EDRLFVKEAY 96
>3ov2_A Curcumin synthase; type III polyketide synthase, transferase; 2.32A
{Curcuma longa} PDB: 3ov3_A
Length = 393
Score = 29.8 bits (67), Expect = 3.9
Identities = 11/70 (15%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 347 KQTEINEPYIAMS------NGAPVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIK 400
++T + + Y+ ++ + +++V+E+ E AIK+ G
Sbjct: 61 EKTMVKKRYLHLTEEILKERPKLCSYKEASFDDRQDIVVEEIPRLAKEAAEKAIKEWGRP 120
Query: 401 VSDINDIILV 410
S+I ++
Sbjct: 121 KSEITHLVFC 130
>1i88_A CHS2, chalcone synthase 2; polyketide synthase, transferase; 1.45A
{Medicago sativa} SCOP: c.95.1.2 c.95.1.2 PDB: 1i89_A
1i86_A 1i8b_A 1bi5_A 1cml_A* 1d6f_A* 1chw_A* 1cgz_A*
1cgk_A* 1bq6_A* 1jwx_A 1d6i_A 1d6h_A* 1u0v_A 1u0w_A*
1z1e_A* 1z1f_A*
Length = 389
Score = 29.9 bits (67), Expect = 4.4
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 347 KQTEINEPYIAMS------NGAPVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIK 400
++ I Y+ ++ N A+ +++V E+ E AIK+ G
Sbjct: 61 DKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQP 120
Query: 401 VSDINDIILV 410
S I +I+
Sbjct: 121 KSKITHLIVC 130
>3bbo_U Ribosomal protein L22; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 199
Score = 29.3 bits (66), Expect = 4.7
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 16/47 (34%)
Query: 580 EEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAY 626
I K++ SA ANA N + K +L I +A
Sbjct: 74 YPIFKLIYSAAANASH-----------NKQFN-----KANLIISKAE 104
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 29.1 bits (65), Expect = 4.7
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 11/76 (14%)
Query: 506 VTVKVYQG--------EREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDIDANGILHVT 557
+ VKV E I EF+ + P + + +T + ++G+L V
Sbjct: 89 LKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIP--ADVDPLTITSSLSSDGVLTVN 146
Query: 558 A-KDKKTGKENKITIK 572
+ + +G E I I
Sbjct: 147 GPRKQVSGPERTIPIT 162
>3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen
condensation reaction, transfera; HET: CER; 1.70A
{Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A
3s20_A* 3fk5_A
Length = 345
Score = 29.5 bits (67), Expect = 4.9
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 8/39 (20%)
Query: 391 RIAIKDAGIKVSDINDIILVGGMTR---MP----KVQEK 422
R A+ DA I + I +++ ++R P V
Sbjct: 77 RKALIDANIGIEKI-GLLINTSVSRDYLEPSTASIVSGN 114
>3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl
transfer, transferase; 2.00A {Streptomyces tendae} PDB:
3t5y_A* 3t6s_A* 3t8e_A 3t5y_B*
Length = 357
Score = 29.1 bits (66), Expect = 7.4
Identities = 4/24 (16%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 391 RIAIKDAGIKVSDINDIILVGGMT 414
R A+ + +D+ ++L +
Sbjct: 63 RAALGRGDVDPADV-SLVLHSSLW 85
>1ted_A PKS18; thiolase fold, substrate binding tunnel, transferase; HET:
MYR; 2.25A {Mycobacterium tuberculosis} SCOP: c.95.1.2
PDB: 1tee_A
Length = 393
Score = 29.3 bits (66), Expect = 7.5
Identities = 5/41 (12%), Positives = 18/41 (43%)
Query: 370 ITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILV 410
R ++ L + + ++ + A+ + ++I ++L
Sbjct: 101 TIRDRMHLFYEHAVPLAVDVSKRALAGLPYRAAEIGLLVLA 141
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology,
protein structure initiati northeast structural genomics
consortium, NESG; NMR {Homo sapiens}
Length = 93
Score = 27.4 bits (61), Expect = 7.6
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 562 KTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRL 599
+ + T + T +IK V S E A ED+ +
Sbjct: 25 RAQEL--HTFEVTGQETVAQIKAHVASLEGIAPEDQVV 60
>1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase;
HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2
c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A*
2eft_A* 2gyo_A* 3il9_A 1ebl_A*
Length = 317
Score = 29.0 bits (66), Expect = 7.6
Identities = 22/82 (26%), Positives = 30/82 (36%), Gaps = 30/82 (36%)
Query: 370 ITRAKLELLV---DELI-TRT------------------IEPCRIAIKDAGIKVSDINDI 407
T A LE +V DE I TRT E AI+ AGI+ I +
Sbjct: 17 RTNADLEKMVDTSDEWIVTRTGIRERHIAAPNETVSTMGFEAATRAIEMAGIEKDQI-GL 75
Query: 408 ILVGGMT---RMP----KVQEK 422
I+V + P ++Q
Sbjct: 76 IVVATTSATHAFPSAACQIQSM 97
>4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle
structural genomics CEN infectious disease, transferase;
2.25A {Burkholderia phymatum}
Length = 412
Score = 29.0 bits (66), Expect = 7.8
Identities = 5/50 (10%), Positives = 12/50 (24%), Gaps = 6/50 (12%)
Query: 393 AIKDAGIKVSDINDIILVG-----GMTRMPKVQEKVKEFFGKDPRRDINP 437
A+ DAG + +G + ++ +
Sbjct: 88 ALADAGFAGDESISDGRMGVAYGSSSGSVEPIRAFGTMLESGSMTD-VTS 136
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 29.0 bits (66), Expect = 9.0
Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 15/44 (34%)
Query: 758 CPKCQGAG--KVIPH-------PCLDCNGIGRIKR-NK-TLEVK 790
C CQG G V PC C+G R N TLEV+
Sbjct: 641 CEHCQGEGWVMVELLFLPSVYAPCPVCHG----TRYNAETLEVE 680
>3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid
biosynthesis, antibiotic, acyltransferase, cytoplasm,
lipid synthesis; HET: B83; 2.50A {Enterococcus faecalis}
PDB: 3il5_A* 3il4_A*
Length = 321
Score = 28.6 bits (65), Expect = 9.5
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 29/81 (35%)
Query: 370 ITRAKLELLV---DELI-TRT-IEPCRI----------------AIKDAGIKVSDINDII 408
+T +L ++ I +RT I RI ++ +G + S+I D I
Sbjct: 19 VTNHQLSEMMDTSAAWIHSRTGISERRIVTQENTSDLCHQVAKQLLEKSGKQASEI-DFI 77
Query: 409 LVGGMT---RMP----KVQEK 422
LV +T MP +VQ
Sbjct: 78 LVATVTPDFNMPSVACQVQGA 98
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.134 0.375
Gapped
Lambda K H
0.267 0.0839 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,489,547
Number of extensions: 962216
Number of successful extensions: 2778
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2644
Number of HSP's successfully gapped: 186
Length of query: 945
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 842
Effective length of database: 3,825,930
Effective search space: 3221433060
Effective search space used: 3221433060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (27.5 bits)