BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2906
         (85 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2QY0|B Chain B, Active Dimeric Structure Of The Catalytic Domain Of C1r
           Reveals Enzyme-product Like Contacts
 pdb|2QY0|D Chain D, Active Dimeric Structure Of The Catalytic Domain Of C1r
           Reveals Enzyme-product Like Contacts
          Length = 242

 Score = 28.9 bits (63), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 11/36 (30%), Positives = 19/36 (52%)

Query: 3   NMMCDVMPTISEDVVPGQRGSLFSGEDANFEQLMVT 38
           NM C   P++ +D   G  G +F+  D N ++ + T
Sbjct: 173 NMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVAT 208


>pdb|1MD8|A Chain A, Monomeric Structure Of The Active Catalytic Domain Of
           Complement Protease C1r
          Length = 329

 Score = 28.9 bits (63), Expect = 0.84,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%)

Query: 3   NMMCDVMPTISEDVVPGQRGSLFSGEDANFEQLMVT 38
           NM C   P++ +D   G  G +F+  D N ++ + T
Sbjct: 262 NMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVAT 297


>pdb|1GPZ|A Chain A, The Crystal Structure Of The Zymogen Catalytic Domain Of
           Complement Protease C1r
 pdb|1GPZ|B Chain B, The Crystal Structure Of The Zymogen Catalytic Domain Of
           Complement Protease C1r
          Length = 399

 Score = 28.5 bits (62), Expect = 0.95,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%)

Query: 3   NMMCDVMPTISEDVVPGQRGSLFSGEDANFEQLMVT 38
           NM C   P++ +D   G  G +F+  D N ++ + T
Sbjct: 330 NMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVAT 365


>pdb|1MD7|A Chain A, Monomeric Structure Of The Zymogen Of Complement Protease
           C1r
          Length = 328

 Score = 28.5 bits (62), Expect = 1.00,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%)

Query: 3   NMMCDVMPTISEDVVPGQRGSLFSGEDANFEQLMVT 38
           NM C   P++ +D   G  G +F+  D N ++ + T
Sbjct: 262 NMFCAGHPSLKQDACQGDAGGVFAVRDPNTDRWVAT 297


>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
 pdb|2XPI|D Chain D, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
          Length = 597

 Score = 25.8 bits (55), Expect = 6.4,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 15  DVVPGQRGSLFSGEDANFEQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSL 74
           D+V     S +S EDA F + +  +   K    D LR  +D LS  +G    +EK  D L
Sbjct: 253 DLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING----LEKSSDLL 308


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.129    0.360 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,297,958
Number of Sequences: 62578
Number of extensions: 74475
Number of successful extensions: 287
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 281
Number of HSP's gapped (non-prelim): 11
length of query: 85
length of database: 14,973,337
effective HSP length: 53
effective length of query: 32
effective length of database: 11,656,703
effective search space: 373014496
effective search space used: 373014496
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)