Query psy2906
Match_columns 85
No_of_seqs 70 out of 72
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 20:37:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2906.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2906hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u1c_A Tropomyosin alpha-1 cha 88.2 1.6 5.4E-05 28.2 6.0 38 41-78 58-95 (101)
2 2dnx_A Syntaxin-12; snare, HAB 87.0 5 0.00017 26.6 8.3 29 41-69 48-76 (130)
3 3u59_A Tropomyosin beta chain; 86.5 2.3 7.9E-05 27.2 6.0 38 41-78 58-95 (101)
4 2fxo_A Myosin heavy chain, car 85.7 4.8 0.00017 26.6 7.4 49 31-79 38-86 (129)
5 2l5g_A GPS2 protein, G protein 84.7 1.9 6.5E-05 24.6 4.3 30 48-77 8-37 (38)
6 1wt6_A Myotonin-protein kinase 80.7 5.1 0.00018 25.9 5.7 38 42-79 25-62 (81)
7 3q8t_A Beclin-1; autophagy, AT 71.0 16 0.00055 23.3 6.2 39 41-79 4-42 (96)
8 3iv1_A Tumor susceptibility ge 70.8 12 0.0004 23.9 5.4 32 47-78 27-62 (78)
9 1ic2_A Tropomyosin alpha chain 69.8 16 0.00056 22.3 6.9 43 36-78 8-50 (81)
10 1ezj_A Nucleocapsid phosphopro 67.1 21 0.00072 24.3 6.3 42 40-81 68-109 (115)
11 1pzr_A Erythronolide synthase; 66.1 16 0.00054 22.0 5.0 27 43-69 30-56 (60)
12 3nmd_A CGMP dependent protein 62.9 25 0.00087 22.0 5.9 33 47-79 32-64 (72)
13 1joc_A EEA1, early endosomal a 59.9 28 0.00095 22.9 5.8 39 41-79 18-56 (125)
14 2fzt_A Hypothetical protein TM 53.5 26 0.00088 22.6 4.6 48 31-79 19-68 (79)
15 2khk_A ATP synthase subunit B; 52.8 19 0.00064 19.7 3.5 39 38-76 2-41 (53)
16 3hnw_A Uncharacterized protein 48.7 59 0.002 21.9 7.3 23 54-76 95-117 (138)
17 1hlo_A Protein (transcription 47.7 35 0.0012 20.5 4.5 31 47-77 49-79 (80)
18 1lwu_C Fibrinogen gamma chain; 47.6 57 0.0019 25.1 6.5 41 36-76 7-47 (323)
19 4e61_A Protein BIM1; EB1-like 47.2 55 0.0019 21.8 5.6 33 42-74 12-44 (106)
20 1joc_A EEA1, early endosomal a 46.8 58 0.002 21.3 5.9 33 39-71 2-34 (125)
21 3oja_A Leucine-rich immune mol 43.7 66 0.0023 24.2 6.3 39 40-78 448-486 (487)
22 4h22_A Leucine-rich repeat fli 43.6 70 0.0024 21.3 5.8 50 30-79 9-68 (103)
23 3u59_A Tropomyosin beta chain; 43.5 59 0.002 20.4 6.6 47 32-78 7-53 (101)
24 4b6x_A AVRRPS4, avirulence pro 43.4 57 0.002 21.3 5.1 47 31-79 32-79 (90)
25 3a7p_A Autophagy protein 16; c 42.2 58 0.002 23.0 5.4 35 41-75 92-130 (152)
26 1ykh_B RNA polymerase II holoe 42.0 51 0.0017 22.0 4.9 34 48-81 92-125 (132)
27 3m91_A Proteasome-associated A 41.7 43 0.0015 19.5 3.9 30 37-66 19-48 (51)
28 4etp_A Kinesin-like protein KA 41.2 1E+02 0.0034 23.8 7.1 50 30-79 6-55 (403)
29 1yke_B RNA polymerase II holoe 39.6 56 0.0019 22.5 4.9 34 48-81 92-125 (151)
30 3bas_A Myosin heavy chain, str 39.5 67 0.0023 19.9 7.3 31 31-61 39-69 (89)
31 2d4y_A HAP1, flagellar HOOK-as 37.7 17 0.00059 28.0 2.2 16 38-53 133-148 (463)
32 3etv_A Protein transport prote 37.6 19 0.00066 28.6 2.6 23 58-80 12-34 (355)
33 3o0z_A RHO-associated protein 37.2 64 0.0022 23.0 5.0 30 50-79 50-79 (168)
34 3f5h_A Type I polyketide synth 36.8 73 0.0025 19.5 4.7 29 42-70 35-63 (68)
35 3twe_A Alpha4H; unknown functi 36.4 47 0.0016 17.3 3.5 21 44-64 4-24 (27)
36 3u1c_A Tropomyosin alpha-1 cha 36.3 81 0.0028 19.9 6.8 46 33-78 8-53 (101)
37 3m1f_V VOPL, putative uncharac 35.4 18 0.00062 19.6 1.5 12 41-52 4-15 (31)
38 4egx_A Kinesin-like protein KI 34.7 1.1E+02 0.0038 21.1 6.2 22 39-60 13-35 (184)
39 3u06_A Protein claret segregat 34.0 1.4E+02 0.0047 23.3 6.9 50 30-79 6-55 (412)
40 1yf2_A Type I restriction-modi 33.7 1.2E+02 0.0042 21.2 6.0 50 29-78 365-416 (425)
41 3ajw_A Flagellar FLIJ protein; 33.4 91 0.0031 19.6 6.5 50 31-80 9-58 (150)
42 2v66_B Nuclear distribution pr 33.3 1E+02 0.0035 20.4 5.3 25 53-77 47-71 (111)
43 3oja_B Anopheles plasmodium-re 32.6 1.6E+02 0.0056 22.4 7.6 15 64-78 539-553 (597)
44 3vkg_A Dynein heavy chain, cyt 31.9 75 0.0026 31.5 5.9 36 45-80 2018-2053(3245)
45 3q0x_A Centriole protein; cent 31.8 1.2E+02 0.0042 22.3 6.0 27 52-78 175-201 (228)
46 2wt7_B Transcription factor MA 31.6 1E+02 0.0036 19.8 6.2 40 41-80 48-87 (90)
47 2dgc_A Protein (GCN4); basic d 31.2 83 0.0028 18.5 4.2 26 54-79 29-54 (63)
48 4egx_A Kinesin-like protein KI 31.1 1.1E+02 0.0039 21.1 5.5 31 41-71 5-39 (184)
49 3u06_A Protein claret segregat 29.7 1.2E+02 0.004 23.7 5.8 39 41-79 3-41 (412)
50 1zxa_A CGMP-dependent protein 28.6 95 0.0033 19.0 4.2 46 26-74 6-51 (67)
51 2l2l_A Transcriptional repress 27.1 36 0.0012 19.6 1.9 22 41-65 4-25 (43)
52 1nkp_B MAX protein, MYC proto- 26.9 1.1E+02 0.0036 18.3 5.4 26 54-79 53-78 (83)
53 2dfs_A Myosin-5A; myosin-V, in 26.5 1.7E+02 0.0058 25.6 6.8 19 62-80 1023-1041(1080)
54 1go4_E MAD1 (mitotic arrest de 26.2 1.1E+02 0.0036 20.1 4.3 27 53-79 10-36 (100)
55 1jad_A PLC-beta, phospholipase 25.9 79 0.0027 23.8 4.1 41 39-79 179-220 (251)
56 2k48_A Nucleoprotein; viral pr 25.8 99 0.0034 20.8 4.1 26 44-69 38-63 (107)
57 4fi5_A Nucleoprotein; structur 25.6 99 0.0034 20.9 4.1 24 45-68 26-49 (113)
58 3cve_A Homer protein homolog 1 24.8 1.3E+02 0.0044 18.6 5.7 21 43-63 16-36 (72)
59 3cvf_A Homer-3, homer protein 24.7 1.4E+02 0.0046 18.8 5.7 22 42-63 21-42 (79)
60 1ydx_A Type I restriction enzy 24.3 2E+02 0.0068 20.6 6.0 38 40-77 354-391 (406)
61 2ic6_A Nucleocapsid protein; h 24.2 1.2E+02 0.0041 19.2 4.1 25 44-68 8-32 (78)
62 1u7k_A GAG polyprotein; capsid 24.2 64 0.0022 22.3 3.0 23 31-53 54-78 (131)
63 1m1j_C Fibrinogen gamma chain; 23.8 2E+02 0.0068 22.7 6.2 43 36-78 86-128 (409)
64 1fxk_A Prefoldin; archaeal pro 23.8 1.3E+02 0.0043 18.1 4.9 26 54-79 7-32 (107)
65 2wl8_A Peroxisomal biogenesis 23.7 1.3E+02 0.0043 20.3 4.4 44 29-72 11-61 (126)
66 1ci6_A Transcription factor AT 23.4 1.2E+02 0.004 17.7 4.2 24 56-79 24-47 (63)
67 3m6z_A Topoisomerase V; helix- 23.1 92 0.0031 24.2 4.1 40 41-80 248-292 (380)
68 3ni0_A Bone marrow stromal ant 23.0 1.7E+02 0.0058 19.4 5.5 36 46-81 51-86 (99)
69 3sl9_C B-cell CLL/lymphoma 9 p 22.6 76 0.0026 18.9 2.8 18 40-57 15-32 (55)
70 1lrz_A FEMA, factor essential 22.5 2.5E+02 0.0084 21.0 7.1 13 28-40 221-233 (426)
71 1nlw_A MAD protein, MAX dimeri 21.9 1.4E+02 0.0049 18.1 5.4 29 48-76 40-68 (80)
72 3htk_A Structural maintenance 21.7 1.2E+02 0.0039 16.9 5.1 34 46-79 24-57 (60)
73 1am9_A Srebp-1A, protein (ster 21.4 1.4E+02 0.0049 17.9 5.2 33 47-79 42-74 (82)
74 2lsl_A Telomerase associated p 26.6 20 0.00069 24.6 0.0 12 5-16 113-124 (137)
75 2pnv_A Small conductance calci 21.0 1.2E+02 0.0042 17.0 5.3 35 46-80 7-41 (43)
76 1yf2_A Type I restriction-modi 20.8 2.2E+02 0.0076 19.9 6.0 48 30-77 156-205 (425)
77 3bej_E Nuclear receptor coacti 20.5 53 0.0018 17.1 1.6 12 40-51 8-19 (26)
78 4eyt_A Telomerase associated p 20.2 14 0.0005 25.2 -0.9 12 5-16 82-93 (129)
No 1
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=88.19 E-value=1.6 Score=28.23 Aligned_cols=38 Identities=32% Similarity=0.494 Sum_probs=34.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy2906 41 DEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQI 78 (85)
Q Consensus 41 dERDkLle~LretQe~L~~~q~rL~eve~ErdsLqrQl 78 (85)
++-|++.+.|.+++..|..+..+..+.+.+..+|+|-+
T Consensus 58 ~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rri 95 (101)
T 3u1c_A 58 DSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999999999999999999954
No 2
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.99 E-value=5 Score=26.61 Aligned_cols=29 Identities=17% Similarity=0.121 Sum_probs=23.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy2906 41 DEKDKLLDNLRETQDRLSETSGKLSMVEK 69 (85)
Q Consensus 41 dERDkLle~LretQe~L~~~q~rL~eve~ 69 (85)
+-|+||-+....|.+-...+...|+++..
T Consensus 48 ~LR~kl~~~~~~t~~l~k~ts~~lk~L~~ 76 (130)
T 2dnx_A 48 KLQENLQQLQHSTNQLAKETNELLKELGS 76 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67999999999999888888888776544
No 3
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=86.47 E-value=2.3 Score=27.19 Aligned_cols=38 Identities=34% Similarity=0.515 Sum_probs=34.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy2906 41 DEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQI 78 (85)
Q Consensus 41 dERDkLle~LretQe~L~~~q~rL~eve~ErdsLqrQl 78 (85)
++-|++.+.|.+++..|..+..+..+.+.+..+|+|-+
T Consensus 58 ~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRri 95 (101)
T 3u59_A 58 DEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999999999999999999999999954
No 4
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=85.72 E-value=4.8 Score=26.64 Aligned_cols=49 Identities=22% Similarity=0.413 Sum_probs=40.1
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2906 31 NFEQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (85)
Q Consensus 31 nfEqLMvnMLdERDkLle~LretQe~L~~~q~rL~eve~ErdsLqrQl~ 79 (85)
.+|.-+++++.|+..|..+|..-++.++.+.-++..+...+..|..+++
T Consensus 38 ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~ 86 (129)
T 2fxo_A 38 ELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVK 86 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4567799999999999999999999999988887777777666666554
No 5
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=84.67 E-value=1.9 Score=24.57 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy2906 48 DNLRETQDRLSETSGKLSMVEKERDSLQRQ 77 (85)
Q Consensus 48 e~LretQe~L~~~q~rL~eve~ErdsLqrQ 77 (85)
-||.||++++...+.||..+..|+-.|=-|
T Consensus 8 mTLeEtkeQi~~l~~kl~~LkeEKHQLFlQ 37 (38)
T 2l5g_A 8 MSLEETKEQILKLEEKLLALQEEKHQLFLQ 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 489999999999999999999998776444
No 6
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=80.73 E-value=5.1 Score=25.93 Aligned_cols=38 Identities=11% Similarity=0.209 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2906 42 EKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (85)
Q Consensus 42 ERDkLle~LretQe~L~~~q~rL~eve~ErdsLqrQl~ 79 (85)
-+.-|.|-|+.++..+..++.||+|.++.+..|...+.
T Consensus 25 AKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~ 62 (81)
T 1wt6_A 25 TRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVR 62 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35668899999999999999999999999988876543
No 7
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=71.04 E-value=16 Score=23.34 Aligned_cols=39 Identities=21% Similarity=0.280 Sum_probs=27.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2906 41 DEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (85)
Q Consensus 41 dERDkLle~LretQe~L~~~q~rL~eve~ErdsLqrQl~ 79 (85)
++++.|-..|+.....=+..-..|.++++++..+..+|.
T Consensus 4 ~~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~ 42 (96)
T 3q8t_A 4 SDSEQLQRELKELALEEERLIQELEDVEKNRKVVAENLE 42 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 455666677777777667777777788888877777654
No 8
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=70.80 E-value=12 Score=23.90 Aligned_cols=32 Identities=25% Similarity=0.479 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHH
Q psy2906 47 LDNLRETQDRLSETSGKLS----MVEKERDSLQRQI 78 (85)
Q Consensus 47 le~LretQe~L~~~q~rL~----eve~ErdsLqrQl 78 (85)
+++|+-|++-|-..++||. +++.|++.|..-+
T Consensus 27 l~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni 62 (78)
T 3iv1_A 27 LNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNI 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999976 5566666666543
No 9
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=69.75 E-value=16 Score=22.27 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=36.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy2906 36 MVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQI 78 (85)
Q Consensus 36 MvnMLdERDkLle~LretQe~L~~~q~rL~eve~ErdsLqrQl 78 (85)
|.+|=.+-|...+.+..++..|..+..+....+.+..+|++-+
T Consensus 8 m~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKi 50 (81)
T 1ic2_A 8 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKL 50 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6677788899999999999999999999888888888888844
No 10
>1ezj_A Nucleocapsid phosphoprotein; four stranded coiled coil, viral polymerase, T viral protein, transferase; 1.90A {Sendai virus} SCOP: h.1.14.1
Probab=67.14 E-value=21 Score=24.30 Aligned_cols=42 Identities=24% Similarity=0.393 Sum_probs=37.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy2906 40 FDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIAAS 81 (85)
Q Consensus 40 LdERDkLle~LretQe~L~~~q~rL~eve~ErdsLqrQl~~~ 81 (85)
.||.|-+|.+..+.-+++-+...||-|-.||..||-.-+-+.
T Consensus 68 v~en~~~L~QIQ~ei~s~rd~hkR~~E~QkEQ~SL~~s~lS~ 109 (115)
T 1ezj_A 68 VDENKQLLKQIQESVESFRDIYKRFSEYQKEQNSLLMSNLST 109 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Confidence 489999999999999999999999999999999997654443
No 11
>1pzr_A Erythronolide synthase; four helix bundle, homodimer, transferase; NMR {Saccharopolyspora erythraea} SCOP: a.38.2.1
Probab=66.13 E-value=16 Score=21.95 Aligned_cols=27 Identities=30% Similarity=0.427 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy2906 43 KDKLLDNLRETQDRLSETSGKLSMVEK 69 (85)
Q Consensus 43 RDkLle~LretQe~L~~~q~rL~eve~ 69 (85)
-+||.+-|+-+-..|..+..++.+++.
T Consensus 30 eeKLrdyLkrvtadL~r~RrRLrelea 56 (60)
T 1pzr_A 30 EEKLRRYLKRTVTELDSVTARLREVEH 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 379999999888888888888888764
No 12
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=62.91 E-value=25 Score=22.04 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2906 47 LDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (85)
Q Consensus 47 le~LretQe~L~~~q~rL~eve~ErdsLqrQl~ 79 (85)
.+.||.-++.+..-+.+|.+-+.+-..|+.+|+
T Consensus 32 ~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 32 IEELRQRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355777777888888889999999999998886
No 13
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=59.88 E-value=28 Score=22.85 Aligned_cols=39 Identities=28% Similarity=0.361 Sum_probs=27.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2906 41 DEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (85)
Q Consensus 41 dERDkLle~LretQe~L~~~q~rL~eve~ErdsLqrQl~ 79 (85)
.|-++|-+.+.+.+..|..+...+++...+..+|+-...
T Consensus 18 ~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~~~~ 56 (125)
T 1joc_A 18 GEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKHT 56 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Confidence 456666667777777777777777788777777775443
No 14
>2fzt_A Hypothetical protein TM0693; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.05A {Thermotoga maritima} SCOP: a.46.3.1 PDB: 2g42_A
Probab=53.55 E-value=26 Score=22.58 Aligned_cols=48 Identities=17% Similarity=0.479 Sum_probs=31.3
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHh
Q psy2906 31 NFEQLMVTMFDEKDKLLDNLRETQDRL--SETSGKLSMVEKERDSLQRQIA 79 (85)
Q Consensus 31 nfEqLMvnMLdERDkLle~LretQe~L--~~~q~rL~eve~ErdsLqrQl~ 79 (85)
+|| ...+.|+.|.+|+..|-+-.-+. .--..|+..+.+-..+|++|..
T Consensus 19 dyE-~L~~LL~kREkLlk~L~~e~l~~i~EkDk~R~~~Ik~~~~~L~q~a~ 68 (79)
T 2fzt_A 19 DYE-TLLSLLNKRKELMEGLPKDKLSEILEKDRKRLEIIEKRKTALFQEIN 68 (79)
T ss_dssp CHH-HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHH-HHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 454 45789999999998875543333 3334456666666677776654
No 15
>2khk_A ATP synthase subunit B; F1FO ATP synthase, spectroscopy, ATP synthesis, inner membrane, cell membrane, CF(0), hydrogen ION transpor transport; NMR {Escherichia coli}
Probab=52.79 E-value=19 Score=19.70 Aligned_cols=39 Identities=5% Similarity=0.126 Sum_probs=25.7
Q ss_pred HhhhhhH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy2906 38 TMFDEKD-KLLDNLRETQDRLSETSGKLSMVEKERDSLQR 76 (85)
Q Consensus 38 nMLdERD-kLle~LretQe~L~~~q~rL~eve~ErdsLqr 76 (85)
++|++|. ++-+.|.++......++..+.+.+......+.
T Consensus 2 ~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~e~~l~~Ar~ 41 (53)
T 2khk_A 2 AAIEKRQKEIADGLASAERAHKDLDLAKASATDQLKKAKA 41 (53)
T ss_dssp CCSSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566664 56677777777777777777766665555443
No 16
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=48.65 E-value=59 Score=21.91 Aligned_cols=23 Identities=22% Similarity=0.161 Sum_probs=10.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Q psy2906 54 QDRLSETSGKLSMVEKERDSLQR 76 (85)
Q Consensus 54 Qe~L~~~q~rL~eve~ErdsLqr 76 (85)
...|..++.++.++.++...|++
T Consensus 95 K~el~~~~~k~e~~~~e~~~l~~ 117 (138)
T 3hnw_A 95 KHELIAAQIKAESSAKEIKELKS 117 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444
No 17
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=47.72 E-value=35 Score=20.48 Aligned_cols=31 Identities=19% Similarity=0.225 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy2906 47 LDNLRETQDRLSETSGKLSMVEKERDSLQRQ 77 (85)
Q Consensus 47 le~LretQe~L~~~q~rL~eve~ErdsLqrQ 77 (85)
.++|+.+-+=+...+.++++++.+.+.|++|
T Consensus 49 ~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 49 AQILDKATEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678888888888888888888888888875
No 18
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=47.56 E-value=57 Score=25.06 Aligned_cols=41 Identities=15% Similarity=0.091 Sum_probs=22.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy2906 36 MVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQR 76 (85)
Q Consensus 36 MvnMLdERDkLle~LretQe~L~~~q~rL~eve~ErdsLqr 76 (85)
+-+|++|-.||-..+.....++...+..|+.....-+.|+.
T Consensus 7 ~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~ 47 (323)
T 1lwu_C 7 VQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQ 47 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677777776555555455555555555544444444443
No 19
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=47.16 E-value=55 Score=21.82 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy2906 42 EKDKLLDNLRETQDRLSETSGKLSMVEKERDSL 74 (85)
Q Consensus 42 ERDkLle~LretQe~L~~~q~rL~eve~ErdsL 74 (85)
|--..-..+.+.+..+.........+++|||..
T Consensus 12 eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFY 44 (106)
T 4e61_A 12 ELTKSQETIGSLNEEIEQYKGTVSTLEIEREFY 44 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455566666666666777888998853
No 20
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=46.76 E-value=58 Score=21.26 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=21.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy2906 39 MFDEKDKLLDNLRETQDRLSETSGKLSMVEKER 71 (85)
Q Consensus 39 MLdERDkLle~LretQe~L~~~q~rL~eve~Er 71 (85)
=++||+.|++..-.+..-+...+.++.+..+.-
T Consensus 2 ~~~e~~~~~~~~~~~e~e~~~l~~~~~el~~~l 34 (125)
T 1joc_A 2 NQDERRALLERCLKGEGEIEKLQTKVLELQRKL 34 (125)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 368999999887777766666665555544433
No 21
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=43.74 E-value=66 Score=24.23 Aligned_cols=39 Identities=18% Similarity=0.195 Sum_probs=23.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy2906 40 FDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQI 78 (85)
Q Consensus 40 LdERDkLle~LretQe~L~~~q~rL~eve~ErdsLqrQl 78 (85)
.+|.+|+-.-+++....++.+..+++++-.....|..|+
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (487)
T 3oja_A 448 AEENARLKKLNGEADLALASANATLQELVVREQNLASQL 486 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHHHhc
Confidence 355555555666666666666666666665555555554
No 22
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=43.59 E-value=70 Score=21.29 Aligned_cols=50 Identities=22% Similarity=0.272 Sum_probs=35.9
Q ss_pred ChHHHHHHHhh----------hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2906 30 ANFEQLMVTMF----------DEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (85)
Q Consensus 30 ~nfEqLMvnML----------dERDkLle~LretQe~L~~~q~rL~eve~ErdsLqrQl~ 79 (85)
..|.--||+-= =+=|-|-|.|.|-.+.++..+-.+.+--++.+.++|..+
T Consensus 9 EKyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~ 68 (103)
T 4h22_A 9 EKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHS 68 (103)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666532 234667788889999999999888887777777776544
No 23
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=43.49 E-value=59 Score=20.41 Aligned_cols=47 Identities=15% Similarity=0.324 Sum_probs=37.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy2906 32 FEQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQI 78 (85)
Q Consensus 32 fEqLMvnMLdERDkLle~LretQe~L~~~q~rL~eve~ErdsLqrQl 78 (85)
|.-=|-+|=.+.|..++-...++..+-.+..+...++.+-.+|++.+
T Consensus 7 iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKi 53 (101)
T 3u59_A 7 IKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKL 53 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44457777788888888888888888888888888888888887754
No 24
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=43.40 E-value=57 Score=21.32 Aligned_cols=47 Identities=32% Similarity=0.436 Sum_probs=29.3
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2906 31 NFEQLMVTMFDEKDKLLDNLRET-QDRLSETSGKLSMVEKERDSLQRQIA 79 (85)
Q Consensus 31 nfEqLMvnMLdERDkLle~Lret-Qe~L~~~q~rL~eve~ErdsLqrQl~ 79 (85)
.=+|+||+=| |+.|.+.-.|. ..-++.++..|...-..--+|+||+.
T Consensus 32 ~DKQ~~i~~L--t~eLq~A~~eaNpaeIA~~~~~L~qAraDL~~l~r~~a 79 (90)
T 4b6x_A 32 EDKQLMVNNL--TDELQDAIDEANPAEIANTSQQLRHARADLADLQRRFA 79 (90)
T ss_dssp HHHHHHHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHHHHHHccCHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3468999866 55666655543 23344555556666666677777764
No 25
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=42.19 E-value=58 Score=23.00 Aligned_cols=35 Identities=26% Similarity=0.172 Sum_probs=21.0
Q ss_pred hhhHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHH
Q psy2906 41 DEKDKLLDNLRE----TQDRLSETSGKLSMVEKERDSLQ 75 (85)
Q Consensus 41 dERDkLle~Lre----tQe~L~~~q~rL~eve~ErdsLq 75 (85)
.++.|+++.|+. .|-++...+.|++.+++|.+.|-
T Consensus 92 ~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV 130 (152)
T 3a7p_A 92 ALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLV 130 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566555543 45555666667777777766553
No 26
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=42.01 E-value=51 Score=21.99 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy2906 48 DNLRETQDRLSETSGKLSMVEKERDSLQRQIAAS 81 (85)
Q Consensus 48 e~LretQe~L~~~q~rL~eve~ErdsLqrQl~~~ 81 (85)
..+++.++.+..+...++++-++.+.|..++...
T Consensus 92 ~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 125 (132)
T 1ykh_B 92 RKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSM 125 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777888888888887777654
No 27
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=41.69 E-value=43 Score=19.52 Aligned_cols=30 Identities=17% Similarity=0.334 Sum_probs=19.4
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHhHHHH
Q psy2906 37 VTMFDEKDKLLDNLRETQDRLSETSGKLSM 66 (85)
Q Consensus 37 vnMLdERDkLle~LretQe~L~~~q~rL~e 66 (85)
..+=.-..||.++|+++.+.|......+..
T Consensus 19 ~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 19 DSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333355677788888888777766555443
No 28
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=41.22 E-value=1e+02 Score=23.84 Aligned_cols=50 Identities=16% Similarity=0.276 Sum_probs=41.5
Q ss_pred ChHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2906 30 ANFEQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (85)
Q Consensus 30 ~nfEqLMvnMLdERDkLle~LretQe~L~~~q~rL~eve~ErdsLqrQl~ 79 (85)
...++-+.++-.+..+|-+.+.+.+..+...+.++.+-+..|..|.-++.
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~ 55 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQ 55 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555577788889999999999999999999999999998888877664
No 29
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=39.58 E-value=56 Score=22.45 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy2906 48 DNLRETQDRLSETSGKLSMVEKERDSLQRQIAAS 81 (85)
Q Consensus 48 e~LretQe~L~~~q~rL~eve~ErdsLqrQl~~~ 81 (85)
..+++.++.+..+...++++-+|.+.|..++...
T Consensus 92 ~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~ 125 (151)
T 1yke_B 92 RKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSL 125 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777788888888888888777653
No 30
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=39.52 E-value=67 Score=19.89 Aligned_cols=31 Identities=23% Similarity=0.534 Sum_probs=18.1
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q psy2906 31 NFEQLMVTMFDEKDKLLDNLRETQDRLSETS 61 (85)
Q Consensus 31 nfEqLMvnMLdERDkLle~LretQe~L~~~q 61 (85)
.+|.-++.++.|+..|..+|.++.++.....
T Consensus 39 ele~~~~~l~~ek~~L~~ql~eaEe~~~~L~ 69 (89)
T 3bas_A 39 ELEEQNVTLLEQKNDLFGSMKQLEDKVEELL 69 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3455577777777777777444444444333
No 31
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=37.68 E-value=17 Score=28.04 Aligned_cols=16 Identities=25% Similarity=0.671 Sum_probs=13.6
Q ss_pred HhhhhhHHHHHHHHHH
Q psy2906 38 TMFDEKDKLLDNLRET 53 (85)
Q Consensus 38 nMLdERDkLle~Lret 53 (85)
.+||+||+|++.|-+.
T Consensus 133 dLlDqRD~ll~eLS~~ 148 (463)
T 2d4y_A 133 DLLDQRDQLVSELNKI 148 (463)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhh
Confidence 4789999999999763
No 32
>3etv_A Protein transport protein TIP20,linker,protein transport protein DSL1; TIP20P-DSL1P complex, endoplasmic reticulum, ER-golgi transport; 1.94A {Saccharomyces cerevisiae} PDB: 3etu_A
Probab=37.61 E-value=19 Score=28.59 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=18.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhh
Q psy2906 58 SETSGKLSMVEKERDSLQRQIAA 80 (85)
Q Consensus 58 ~~~q~rL~eve~ErdsLqrQl~~ 80 (85)
-.-..|.+++++|||.|.+||..
T Consensus 12 l~id~~I~~i~~eRd~La~~lq~ 34 (355)
T 3etv_A 12 LNINDRIKQVQNERNELASKLQN 34 (355)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999998864
No 33
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=37.17 E-value=64 Score=23.00 Aligned_cols=30 Identities=27% Similarity=0.201 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2906 50 LRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (85)
Q Consensus 50 LretQe~L~~~q~rL~eve~ErdsLqrQl~ 79 (85)
+||.|+.+...+..-..++++...||.+|.
T Consensus 50 ~rELq~~~~~L~~~k~~Leke~~~LQa~L~ 79 (168)
T 3o0z_A 50 NRELQERNRILENSKSQTDKDYYQLQAILE 79 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555444444455555555555544
No 34
>3f5h_A Type I polyketide synthase PIKAIII, type I polyketide synthase pikaiv fusion protein...; docking domain, pikromycin, H2-T2; 1.75A {Streptomyces venezuelae}
Probab=36.77 E-value=73 Score=19.54 Aligned_cols=29 Identities=17% Similarity=0.223 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy2906 42 EKDKLLDNLRETQDRLSETSGKLSMVEKE 70 (85)
Q Consensus 42 ERDkLle~LretQe~L~~~q~rL~eve~E 70 (85)
.=+||.+-|+.....|..++.++++++..
T Consensus 35 ~eekLrdyLrrvtadL~~aR~rLrelEaa 63 (68)
T 3f5h_A 35 SNEQLVDALRASLKENEELRKESRRRADR 63 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45799999999999999999999988754
No 35
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=36.43 E-value=47 Score=17.27 Aligned_cols=21 Identities=38% Similarity=0.585 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHH
Q psy2906 44 DKLLDNLRETQDRLSETSGKL 64 (85)
Q Consensus 44 DkLle~LretQe~L~~~q~rL 64 (85)
|.|..-|...|++|.....||
T Consensus 4 delykeledlqerlrklrkkl 24 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 567777777777777666555
No 36
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=36.33 E-value=81 Score=19.94 Aligned_cols=46 Identities=15% Similarity=0.242 Sum_probs=33.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy2906 33 EQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQI 78 (85)
Q Consensus 33 EqLMvnMLdERDkLle~LretQe~L~~~q~rL~eve~ErdsLqrQl 78 (85)
.-=|-+|=.+.|..++-...++..+-.+..+...++.|-.+|++.+
T Consensus 8 KkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~ 53 (101)
T 3u1c_A 8 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQL 53 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3346666678888888888888887777777777777777777643
No 37
>3m1f_V VOPL, putative uncharacterized protein VPA1370; actin, actin-binding protein, crosslinking, nucleator, prote protein interaction; HET: HIC ATP; 2.89A {Oryctolagus cuniculus}
Probab=35.39 E-value=18 Score=19.58 Aligned_cols=12 Identities=25% Similarity=0.808 Sum_probs=9.8
Q ss_pred hhhHHHHHHHHH
Q psy2906 41 DEKDKLLDNLRE 52 (85)
Q Consensus 41 dERDkLle~Lre 52 (85)
+.|-||+|.+|.
T Consensus 4 edrSKLMEqIRq 15 (31)
T 3m1f_V 4 EDHSKLMEQIRQ 15 (31)
T ss_dssp TTHHHHHHHHHH
T ss_pred hhHHHHHHHHHh
Confidence 578999998874
No 38
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=34.70 E-value=1.1e+02 Score=21.09 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=10.8
Q ss_pred hhhhhHHHHHHHHHH-HHHHHHH
Q psy2906 39 MFDEKDKLLDNLRET-QDRLSET 60 (85)
Q Consensus 39 MLdERDkLle~Lret-Qe~L~~~ 60 (85)
-|.+.+||+..|.++ .+.|..|
T Consensus 13 ~L~~~e~l~~el~~tWeeKl~~t 35 (184)
T 4egx_A 13 RLKETEKIIAELNETWEEKLRRT 35 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Confidence 344555555555544 4444443
No 39
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=34.05 E-value=1.4e+02 Score=23.27 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=38.4
Q ss_pred ChHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2906 30 ANFEQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (85)
Q Consensus 30 ~nfEqLMvnMLdERDkLle~LretQe~L~~~q~rL~eve~ErdsLqrQl~ 79 (85)
..++.-....-+...+|.....+.+..+.....+|.+.+.+|-.|.-++.
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~ 55 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVM 55 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777778888888888888888888888888877777776554
No 40
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=33.66 E-value=1.2e+02 Score=21.23 Aligned_cols=50 Identities=8% Similarity=0.260 Sum_probs=36.6
Q ss_pred cChHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy2906 29 DANFEQLMVTM--FDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQI 78 (85)
Q Consensus 29 ~~nfEqLMvnM--LdERDkLle~LretQe~L~~~q~rL~eve~ErdsLqrQl 78 (85)
...|..+-+.. |+|-.|+.+.|..........+.+++.++.-|++|-.++
T Consensus 365 ~~~l~~~~i~lPpl~eQ~~I~~~l~~ld~~i~~~~~~~~~l~~~k~~Ll~~l 416 (425)
T 1yf2_A 365 KSMLENFKIPLPPLEEQKQIAKILSSVDKSIELKKQKKEKLQRMKKKIMELL 416 (425)
T ss_dssp HHHHHHCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555553322 688899988888888888888888888888888876543
No 41
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=33.45 E-value=91 Score=19.63 Aligned_cols=50 Identities=16% Similarity=0.158 Sum_probs=35.5
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy2906 31 NFEQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIAA 80 (85)
Q Consensus 31 nfEqLMvnMLdERDkLle~LretQe~L~~~q~rL~eve~ErdsLqrQl~~ 80 (85)
.|+.|.-===.+.|..-..|-..+..+...+.+|..+...++....++..
T Consensus 9 ~L~~ll~l~~~~ed~a~~~l~~a~~~~~~~~~~L~~L~~~~~~y~~~~~~ 58 (150)
T 3ajw_A 9 ALETLKDLAEKEVDDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRSNLNT 58 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444333335566667778888888999999999999998888766553
No 42
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=33.34 E-value=1e+02 Score=20.45 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=16.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Q psy2906 53 TQDRLSETSGKLSMVEKERDSLQRQ 77 (85)
Q Consensus 53 tQe~L~~~q~rL~eve~ErdsLqrQ 77 (85)
.+..-...+.++.++|...|.|-|+
T Consensus 47 lr~~~~~l~~~iReLEq~NDDLER~ 71 (111)
T 2v66_B 47 TRAIKEQLHKYVRELEQANDDLERA 71 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHH
Confidence 3333344566777888888888775
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=32.63 E-value=1.6e+02 Score=22.38 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHH
Q psy2906 64 LSMVEKERDSLQRQI 78 (85)
Q Consensus 64 L~eve~ErdsLqrQl 78 (85)
++.+++|++.+.+++
T Consensus 539 ~~~~~~~~~~le~~~ 553 (597)
T 3oja_B 539 TEDLEQENIALEKQL 553 (597)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhhHHhhhHHHHHHH
Confidence 444445555555443
No 44
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=31.87 E-value=75 Score=31.49 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy2906 45 KLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIAA 80 (85)
Q Consensus 45 kLle~LretQe~L~~~q~rL~eve~ErdsLqrQl~~ 80 (85)
++-+.|.++++.|...+.+|++++.+-..|+.+++.
T Consensus 2018 ~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~ 2053 (3245)
T 3vkg_A 2018 QLENAANELKLKQDEIVATITALEKSIATYKEEYAT 2053 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666666666665543
No 45
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=31.82 E-value=1.2e+02 Score=22.28 Aligned_cols=27 Identities=30% Similarity=0.414 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy2906 52 ETQDRLSETSGKLSMVEKERDSLQRQI 78 (85)
Q Consensus 52 etQe~L~~~q~rL~eve~ErdsLqrQl 78 (85)
..+..|...+.+|+...-|++|++.|+
T Consensus 175 ~lK~kl~~l~~~L~~~~~e~~s~~~~~ 201 (228)
T 3q0x_A 175 EVKGTCHDLSDDLSRTRDDRDSMVAQL 201 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555444
No 46
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=31.63 E-value=1e+02 Score=19.76 Aligned_cols=40 Identities=15% Similarity=0.269 Sum_probs=26.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy2906 41 DEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIAA 80 (85)
Q Consensus 41 dERDkLle~LretQe~L~~~q~rL~eve~ErdsLqrQl~~ 80 (85)
++++.|=......+..+......+..+.+|+|.++..+.+
T Consensus 48 ~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555666666666677778888888776653
No 47
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=31.24 E-value=83 Score=18.51 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=18.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2906 54 QDRLSETSGKLSMVEKERDSLQRQIA 79 (85)
Q Consensus 54 Qe~L~~~q~rL~eve~ErdsLqrQl~ 79 (85)
++.+...+.++.+++.++..|..+++
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~ 54 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVA 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777778888888877655
No 48
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=31.14 E-value=1.1e+02 Score=21.07 Aligned_cols=31 Identities=26% Similarity=0.397 Sum_probs=21.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHH----hHHHHHHHHH
Q psy2906 41 DEKDKLLDNLRETQDRLSETS----GKLSMVEKER 71 (85)
Q Consensus 41 dERDkLle~LretQe~L~~~q----~rL~eve~Er 71 (85)
+..+.|.|.|.+++..+.+.+ .||++.+.-+
T Consensus 5 ~~~ee~~e~L~~~e~l~~el~~tWeeKl~~te~~~ 39 (184)
T 4egx_A 5 EFSEEAIERLKETEKIIAELNETWEEKLRRTEAIR 39 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 345678899999988888875 5676554433
No 49
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=29.70 E-value=1.2e+02 Score=23.66 Aligned_cols=39 Identities=13% Similarity=0.054 Sum_probs=28.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2906 41 DEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (85)
Q Consensus 41 dERDkLle~LretQe~L~~~q~rL~eve~ErdsLqrQl~ 79 (85)
.||+-|=+.|++.++.+...+.+.++...+...++.||.
T Consensus 3 ~~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 41 (412)
T 3u06_A 3 SMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLF 41 (412)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477788888888888888888877777777777666554
No 50
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=28.62 E-value=95 Score=19.01 Aligned_cols=46 Identities=17% Similarity=0.351 Sum_probs=18.0
Q ss_pred CCCcChHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy2906 26 SGEDANFEQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSL 74 (85)
Q Consensus 26 ~~~~~nfEqLMvnMLdERDkLle~LretQe~L~~~q~rL~eve~ErdsL 74 (85)
.|+.+..++-+..+|..+|-++.-| +.+|.......+++..+-|.+
T Consensus 6 ~~~~~~~~e~~~~~i~~Kde~I~eL---E~~L~~kd~eI~eLr~~LdK~ 51 (67)
T 1zxa_A 6 PGSTSELEEDFAKILMLKEERIKEL---EKRLSEKEEEIQELKRKLHKC 51 (67)
T ss_dssp -----------CHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHccHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777778887777665544 233444444444444433333
No 51
>2l2l_A Transcriptional repressor P66-alpha; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=27.15 E-value=36 Score=19.64 Aligned_cols=22 Identities=27% Similarity=0.595 Sum_probs=14.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHH
Q psy2906 41 DEKDKLLDNLRETQDRLSETSGKLS 65 (85)
Q Consensus 41 dERDkLle~LretQe~L~~~q~rL~ 65 (85)
+||++++..|||- |-.-..||-
T Consensus 4 ~ere~~i~~Lree---LR~EEaKLv 25 (43)
T 2l2l_A 4 EERERMIKQLKEE---LRLEEAKLV 25 (43)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHH
Confidence 6899999888763 444444543
No 52
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=26.94 E-value=1.1e+02 Score=18.32 Aligned_cols=26 Identities=8% Similarity=0.233 Sum_probs=12.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2906 54 QDRLSETSGKLSMVEKERDSLQRQIA 79 (85)
Q Consensus 54 Qe~L~~~q~rL~eve~ErdsLqrQl~ 79 (85)
|......+..+.++.++...|+.+|.
T Consensus 53 ~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 53 RRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344445555555555555554
No 53
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=26.54 E-value=1.7e+02 Score=25.60 Aligned_cols=19 Identities=11% Similarity=0.141 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q psy2906 62 GKLSMVEKERDSLQRQIAA 80 (85)
Q Consensus 62 ~rL~eve~ErdsLqrQl~~ 80 (85)
.++..+++|...|+.|++.
T Consensus 1023 ~kv~~L~~e~~~L~qq~~~ 1041 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKEE 1041 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566677777777776653
No 54
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=26.21 E-value=1.1e+02 Score=20.09 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=18.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2906 53 TQDRLSETSGKLSMVEKERDSLQRQIA 79 (85)
Q Consensus 53 tQe~L~~~q~rL~eve~ErdsLqrQl~ 79 (85)
|-+.+.....++..++.|++.|.+.++
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~ 36 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKR 36 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667777888888888877554
No 55
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Probab=25.94 E-value=79 Score=23.78 Aligned_cols=41 Identities=17% Similarity=0.310 Sum_probs=31.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHh
Q psy2906 39 MFDEKDKLLDNLRETQDRLSETSGK-LSMVEKERDSLQRQIA 79 (85)
Q Consensus 39 MLdERDkLle~LretQe~L~~~q~r-L~eve~ErdsLqrQl~ 79 (85)
.+++|-+|-+.-..-++.|-..+.. |..++.|+-.||-++.
T Consensus 179 ~veerkrl~~kQ~k~qEkL~~~h~e~le~l~~e~~k~~~~~~ 220 (251)
T 1jad_A 179 VVQTIKLLTEKTARYQQKLEEKQAENLRAIQEKEGQLQQEAV 220 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 4577888887777778888777776 7777788877777766
No 56
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=25.77 E-value=99 Score=20.79 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy2906 44 DKLLDNLRETQDRLSETSGKLSMVEK 69 (85)
Q Consensus 44 DkLle~LretQe~L~~~q~rL~eve~ 69 (85)
.+|.+-+...--+|..+++||++.++
T Consensus 38 eeLQ~Ei~~~E~QL~iArQKLkdAe~ 63 (107)
T 2k48_A 38 QELQENITAHEQQLVTARQKLKDAEK 63 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888899999999985543
No 57
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=25.56 E-value=99 Score=20.95 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Q psy2906 45 KLLDNLRETQDRLSETSGKLSMVE 68 (85)
Q Consensus 45 kLle~LretQe~L~~~q~rL~eve 68 (85)
+|.+-+...--+|..++.||++.+
T Consensus 26 eLq~Ei~~~E~QL~~ArQKLkdA~ 49 (113)
T 4fi5_A 26 ELQREINAHEGQLVIARQKVRDAE 49 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777888888877443
No 58
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=24.81 E-value=1.3e+02 Score=18.62 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhH
Q psy2906 43 KDKLLDNLRETQDRLSETSGK 63 (85)
Q Consensus 43 RDkLle~LretQe~L~~~q~r 63 (85)
+.-|=++++..+.+|..++.+
T Consensus 16 N~~Le~~v~~le~~Le~s~~~ 36 (72)
T 3cve_A 16 NKDLEGQLSEMEQRLEKSQSE 36 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555554443
No 59
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=24.67 E-value=1.4e+02 Score=18.80 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhH
Q psy2906 42 EKDKLLDNLRETQDRLSETSGK 63 (85)
Q Consensus 42 ERDkLle~LretQe~L~~~q~r 63 (85)
++.-|=++++..+.+|..++.+
T Consensus 21 rN~~Le~~v~~le~~Le~s~~~ 42 (79)
T 3cvf_A 21 RNAELEHQLRAMERSLEEARAE 42 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555543
No 60
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=24.26 E-value=2e+02 Score=20.57 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=29.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy2906 40 FDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQ 77 (85)
Q Consensus 40 LdERDkLle~LretQe~L~~~q~rL~eve~ErdsLqrQ 77 (85)
++|-.++.+.|......+...+.++..++.-|++|-.+
T Consensus 354 l~eQ~~I~~~l~~id~~i~~~~~~i~~L~~lk~~LL~~ 391 (406)
T 1ydx_A 354 FQLQRKAGKIVFLLDQKLDQYKKELSSLTVIRDTLLKK 391 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888877777777777777777778777654
No 61
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=24.22 E-value=1.2e+02 Score=19.20 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH
Q psy2906 44 DKLLDNLRETQDRLSETSGKLSMVE 68 (85)
Q Consensus 44 DkLle~LretQe~L~~~q~rL~eve 68 (85)
.+|.+-+...--+|..++.||++.+
T Consensus 8 ~eLq~e~~~~E~QL~~A~QKLkdA~ 32 (78)
T 2ic6_A 8 KEVQDNITLHEQRLVTTRQKLKDAE 32 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777888888899988544
No 62
>1u7k_A GAG polyprotein; capsid, viral protein; 1.85A {Endogenous} SCOP: a.73.1.1 PDB: 2y4z_A 3bp9_A
Probab=24.15 E-value=64 Score=22.31 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=17.4
Q ss_pred hHHHHHHHhh--hhhHHHHHHHHHH
Q psy2906 31 NFEQLMVTMF--DEKDKLLDNLRET 53 (85)
Q Consensus 31 nfEqLMvnML--dERDkLle~Lret 53 (85)
.+.|||.+.| +||.+++...|..
T Consensus 54 D~qqLL~tLlT~EEr~ril~eArk~ 78 (131)
T 1u7k_A 54 DCQQLLGTLLTGEEKQRVLLEARKA 78 (131)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 4567777777 8999988877743
No 63
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=23.84 E-value=2e+02 Score=22.70 Aligned_cols=43 Identities=9% Similarity=0.173 Sum_probs=24.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy2906 36 MVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQI 78 (85)
Q Consensus 36 MvnMLdERDkLle~LretQe~L~~~q~rL~eve~ErdsLqrQl 78 (85)
--+|+++..+|-..+.....++...+..+......-+.|+.++
T Consensus 86 skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i 128 (409)
T 1m1j_C 86 SKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKI 128 (409)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3468888888766555555555555555554444444444433
No 64
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=23.79 E-value=1.3e+02 Score=18.15 Aligned_cols=26 Identities=8% Similarity=0.230 Sum_probs=12.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2906 54 QDRLSETSGKLSMVEKERDSLQRQIA 79 (85)
Q Consensus 54 Qe~L~~~q~rL~eve~ErdsLqrQl~ 79 (85)
..++...+.+++.+...+..+.++++
T Consensus 7 i~~f~~lq~~~~~l~~q~~~l~~~~~ 32 (107)
T 1fxk_A 7 LAQFQQLQQQAQAISVQKQTVEMQIN 32 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555443
No 65
>2wl8_A Peroxisomal biogenesis factor 19; protein transport, biogenesis disorder, zellweger syndrome, membrane, prenylation; 2.05A {Homo sapiens}
Probab=23.72 E-value=1.3e+02 Score=20.33 Aligned_cols=44 Identities=23% Similarity=0.365 Sum_probs=29.3
Q ss_pred cChHHHHHHHhhh---hhHHHHHHHHHHHHH----HHHHHhHHHHHHHHHH
Q psy2906 29 DANFEQLMVTMFD---EKDKLLDNLRETQDR----LSETSGKLSMVEKERD 72 (85)
Q Consensus 29 ~~nfEqLMvnMLd---ERDkLle~LretQe~----L~~~q~rL~eve~Erd 72 (85)
+..|..+|.+|+. -+|-|++.+.|..+. |.....+|..-.++|=
T Consensus 11 ~~~~~~~~~~mMqqL~SKevLYepmKel~~kyP~WLe~nk~~l~~Ed~~RY 61 (126)
T 2wl8_A 11 EGNILPIMQSIMQNLLSKDVLYPSLKEITEKYPEWLQSHRESLPPEQFEKY 61 (126)
T ss_dssp ---CHHHHHHHHHHHTSHHHHHHHHHHHHTTHHHHHHHHGGGSCHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhHHhhhccHHHHHHHhhHHHHhCcccCCHHHHHHH
Confidence 4578888888774 589999999998876 5556666654444443
No 66
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=23.39 E-value=1.2e+02 Score=17.68 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=14.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHh
Q psy2906 56 RLSETSGKLSMVEKERDSLQRQIA 79 (85)
Q Consensus 56 ~L~~~q~rL~eve~ErdsLqrQl~ 79 (85)
.....+.+.++++.+++.|..+++
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~ 47 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERAD 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666777776666554
No 67
>3m6z_A Topoisomerase V; helix-hairpin-helix, conformational changes I protein; HET: PO4; 1.40A {Methanopyrus kandleri} PDB: 3m6k_A* 3m7d_A 3m7g_A
Probab=23.06 E-value=92 Score=24.25 Aligned_cols=40 Identities=33% Similarity=0.492 Sum_probs=30.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHhh
Q psy2906 41 DEKDKLLDNLRETQDRLSETSGK-----LSMVEKERDSLQRQIAA 80 (85)
Q Consensus 41 dERDkLle~LretQe~L~~~q~r-----L~eve~ErdsLqrQl~~ 80 (85)
..||+|+|-|-|.-+.|.+--.| -=-|+|.||.+.|-|..
T Consensus 248 krrdrlleelyehleelserylrhpltrrwivehkrdimrryleq 292 (380)
T 3m6z_A 248 KRRDRLLEELYEHLEELSERYLRHPLTRRWIVEHKRDIMRRYLEQ 292 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSSCCCHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHH
Confidence 56899999999988888765443 22689999999886653
No 68
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=22.96 E-value=1.7e+02 Score=19.37 Aligned_cols=36 Identities=17% Similarity=0.307 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy2906 46 LLDNLRETQDRLSETSGKLSMVEKERDSLQRQIAAS 81 (85)
Q Consensus 46 Lle~LretQe~L~~~q~rL~eve~ErdsLqrQl~~~ 81 (85)
|.++|..-+-+-..-+.|.+|.+-|-..|+.+|..+
T Consensus 51 L~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda 86 (99)
T 3ni0_A 51 LQESLEKKVSQALEQQARIKELENEVTKLNQELENL 86 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443344456667777777676666543
No 69
>3sl9_C B-cell CLL/lymphoma 9 protein; armadillo repeat, components of the WNT signaling pathway, B catenin, signaling protein, protein binding; 2.20A {Homo sapiens} PDB: 2gl7_C
Probab=22.59 E-value=76 Score=18.94 Aligned_cols=18 Identities=28% Similarity=0.593 Sum_probs=15.5
Q ss_pred hhhhHHHHHHHHHHHHHH
Q psy2906 40 FDEKDKLLDNLRETQDRL 57 (85)
Q Consensus 40 LdERDkLle~LretQe~L 57 (85)
|+-|.|-|.+||..|.-|
T Consensus 15 lehrerslqtlrdi~r~~ 32 (55)
T 3sl9_C 15 LEHRERSLQTLRDIQRML 32 (55)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 588999999999988765
No 70
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=22.54 E-value=2.5e+02 Score=21.03 Aligned_cols=13 Identities=8% Similarity=0.015 Sum_probs=7.8
Q ss_pred CcChHHHHHHHhh
Q psy2906 28 EDANFEQLMVTMF 40 (85)
Q Consensus 28 ~~~nfEqLMvnML 40 (85)
+.+=|++|+-++=
T Consensus 221 ~~~yf~~l~~~~~ 233 (426)
T 1lrz_A 221 DDKFYYNRLKYYK 233 (426)
T ss_dssp CHHHHHHHHHHHG
T ss_pred CHHHHHHHHHHhc
Confidence 4456777765553
No 71
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=21.86 E-value=1.4e+02 Score=18.09 Aligned_cols=29 Identities=17% Similarity=0.154 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy2906 48 DNLRETQDRLSETSGKLSMVEKERDSLQR 76 (85)
Q Consensus 48 e~LretQe~L~~~q~rL~eve~ErdsLqr 76 (85)
++|..+.+-+...+.+-+....|.+.|++
T Consensus 40 ~iL~kA~~yI~~L~~~~~~l~~e~~~L~~ 68 (80)
T 1nlw_A 40 SLLTKAKLHIKKLEDSDRKAVHQIDQLQR 68 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555544
No 72
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=21.65 E-value=1.2e+02 Score=16.91 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2906 46 LLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (85)
Q Consensus 46 Lle~LretQe~L~~~q~rL~eve~ErdsLqrQl~ 79 (85)
+-..+.+++..+..+-..|..+-.+-..++.|+.
T Consensus 24 ~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 24 KTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555554443
No 73
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=21.40 E-value=1.4e+02 Score=17.94 Aligned_cols=33 Identities=18% Similarity=0.133 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2906 47 LDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (85)
Q Consensus 47 le~LretQe~L~~~q~rL~eve~ErdsLqrQl~ 79 (85)
..+|..+-+=+...+...+.++.+...|+..+.
T Consensus 42 a~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 42 SAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666777777777777778888888877655
No 74
>2lsl_A Telomerase associated protein P65; LA protein, LARP7, RRM, RNA BI protein; NMR {Tetrahymena thermophila}
Probab=26.58 E-value=20 Score=24.64 Aligned_cols=12 Identities=58% Similarity=1.063 Sum_probs=10.7
Q ss_pred cccccccccCCC
Q psy2906 5 MCDVMPTISEDV 16 (85)
Q Consensus 5 MCdVMPTIsEd~ 16 (85)
.|||..||.||.
T Consensus 113 icdvistipede 124 (137)
T 2lsl_A 113 ICDVISTIPEDE 124 (137)
Confidence 599999999985
No 75
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=21.03 E-value=1.2e+02 Score=17.00 Aligned_cols=35 Identities=17% Similarity=0.331 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy2906 46 LLDNLRETQDRLSETSGKLSMVEKERDSLQRQIAA 80 (85)
Q Consensus 46 Lle~LretQe~L~~~q~rL~eve~ErdsLqrQl~~ 80 (85)
..|-+.|-+.+=.....|+.-.|..-|.|+++|.+
T Consensus 7 mydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~a 41 (43)
T 2pnv_A 7 MYDMISDLNERSEDFEKRIVTLETKLETLIGSIHA 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34555666666666677888888888888888764
No 76
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=20.79 E-value=2.2e+02 Score=19.88 Aligned_cols=48 Identities=8% Similarity=0.269 Sum_probs=31.4
Q ss_pred ChHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy2906 30 ANFEQLMVTM--FDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQ 77 (85)
Q Consensus 30 ~nfEqLMvnM--LdERDkLle~LretQe~L~~~q~rL~eve~ErdsLqrQ 77 (85)
..|..+-+-. |+|-.|+.+.|...-+..+..+.+++.++.-|.+|-.+
T Consensus 156 ~~l~~~~i~lPpl~EQ~~I~~~l~~ld~~i~~~~~~i~~l~~~k~~l~~~ 205 (425)
T 1yf2_A 156 QIVKSFKIPLPPLEEQKQIAKILTKIDEGIEIIEKSINKLERIKKGLMHK 205 (425)
T ss_dssp HHHHTCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443322 58888888888777777777777777777767666544
No 77
>3bej_E Nuclear receptor coactivator 1; FXR, BAR, NR1H4, bIle acid receptor, NHR, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: MUF; 1.90A {Homo sapiens} PDB: 1fm9_B* 1k74_B* 1fm6_B* 1p8d_C* 1rdt_B* 1nrl_C* 3ipq_B* 3ips_C* 3ipu_C* 4dm6_E* 4dm8_C* 3kmg_B* 2hfp_B* 1k7l_B*
Probab=20.55 E-value=53 Score=17.08 Aligned_cols=12 Identities=33% Similarity=0.589 Sum_probs=10.0
Q ss_pred hhhhHHHHHHHH
Q psy2906 40 FDEKDKLLDNLR 51 (85)
Q Consensus 40 LdERDkLle~Lr 51 (85)
|.||+|+|-.|-
T Consensus 8 L~EkHkILHrLL 19 (26)
T 3bej_E 8 LTERHKILHRLL 19 (26)
T ss_pred HHHHHHHHHHHH
Confidence 889999997764
No 78
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=20.21 E-value=14 Score=25.17 Aligned_cols=12 Identities=58% Similarity=1.063 Sum_probs=10.2
Q ss_pred cccccccccCCC
Q psy2906 5 MCDVMPTISEDV 16 (85)
Q Consensus 5 MCdVMPTIsEd~ 16 (85)
.|||..||.||.
T Consensus 82 icdvistipede 93 (129)
T 4eyt_A 82 ICDVISTIPEDE 93 (129)
T ss_dssp EEEEECCCCHHH
T ss_pred eeeeeecCCchh
Confidence 599999999873
Done!