Query psy2906
Match_columns 85
No_of_seqs 70 out of 72
Neff 3.6
Searched_HMMs 13730
Date Fri Aug 16 20:38:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2906.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2906hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pzra_ a.38.2.1 (A:) Erythron 70.7 6.1 0.00044 22.7 5.3 27 44-70 31-57 (60)
2 d1ydxa1 d.287.1.2 (A:1-193) Bi 68.0 4.1 0.0003 24.5 4.4 54 25-78 125-181 (193)
3 d1yf2a2 d.287.1.2 (A:221-425) 67.0 9.6 0.0007 22.4 6.0 39 40-78 158-196 (205)
4 d1ykhb1 a.252.1.1 (B:2-130) RN 65.4 5.8 0.00042 25.2 4.9 36 47-82 90-125 (129)
5 d1yf2a1 d.287.1.2 (A:1-220) Bi 59.4 15 0.0011 22.4 6.0 40 40-79 168-207 (220)
6 d1wu9a1 a.245.1.1 (A:191-249) 52.0 7.2 0.00052 22.2 3.2 25 50-74 3-27 (59)
7 d1ydxa2 d.287.1.2 (A:194-374) 47.4 24 0.0017 20.7 6.0 50 29-78 124-176 (181)
8 d2fzta1 a.46.3.1 (A:1-78) Hypo 46.9 15 0.0011 22.0 4.2 49 30-79 17-67 (78)
9 d1seta1 a.2.7.1 (A:1-110) Sery 39.8 32 0.0023 20.0 5.3 6 41-46 35-40 (110)
10 d1zbdb_ g.50.1.1 (B:) Effector 35.4 41 0.003 20.1 5.4 37 41-77 6-42 (124)
11 d2b5aa1 a.35.1.3 (A:1-77) Regu 30.5 7.5 0.00054 21.2 0.8 31 36-66 1-31 (77)
12 d2id6a1 a.4.1.9 (A:1-75) Trans 27.3 33 0.0024 18.3 3.3 30 39-68 1-30 (75)
13 d1nlwa_ a.38.1.1 (A:) Mad prot 26.9 48 0.0035 18.2 5.4 18 61-78 60-77 (79)
14 d2csba5 a.267.1.1 (A:3-293) To 24.0 46 0.0034 23.3 4.3 40 41-80 246-290 (291)
15 d1z0jb1 a.2.19.1 (B:734-784) F 22.9 43 0.0031 18.4 3.1 21 40-60 26-46 (51)
16 d2cxfa1 a.256.1.1 (A:83-249) R 22.2 20 0.0014 22.5 1.8 27 39-65 1-27 (167)
17 d1t98a2 a.47.6.1 (A:119-281) C 21.5 30 0.0022 23.1 2.7 18 48-65 95-112 (163)
No 1
>d1pzra_ a.38.2.1 (A:) Erythronolide synthase {Saccharopolyspora erythraea [TaxId: 1836]}
Probab=70.67 E-value=6.1 Score=22.68 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy2906 44 DKLLDNLRETQDRLSETSGKLSMVEKE 70 (85)
Q Consensus 44 DkLle~LretQe~L~~~q~rL~eve~E 70 (85)
|||---|+-|--.|....+||.|+|+.
T Consensus 31 dkLRRYLkRTv~eLdsVtaRLrEvEyR 57 (60)
T d1pzra_ 31 EKLRRYLKRTVTELDSVTARLREVEHR 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788889999999999999999999974
No 2
>d1ydxa1 d.287.1.2 (A:1-193) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=67.97 E-value=4.1 Score=24.50 Aligned_cols=54 Identities=15% Similarity=0.269 Sum_probs=42.8
Q ss_pred CCCCcChHHHHHHHh---hhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy2906 25 FSGEDANFEQLMVTM---FDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQI 78 (85)
Q Consensus 25 ~~~~~~nfEqLMvnM---LdERDkLle~LretQe~L~~~q~rL~eve~ErdsLqrQl 78 (85)
+.-..++|..+.+.+ ++|..++.+.|....+.+...+.+++.+++-|+.|--+|
T Consensus 125 ~~i~~~~i~~~~i~lpP~~~eQ~~I~~~l~~ld~~i~~~~~~i~~l~~~~~~ll~~l 181 (193)
T d1ydxa1 125 QNIRISDLKELEIPFTSNKNEQHAIANTLSVFDERLENLASLIEINRKLRDEYAHKL 181 (193)
T ss_dssp CBCCHHHHHHCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceecHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333456777765444 788999999999999999999999999999998887665
No 3
>d1yf2a2 d.287.1.2 (A:221-425) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=67.00 E-value=9.6 Score=22.38 Aligned_cols=39 Identities=8% Similarity=0.228 Sum_probs=31.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy2906 40 FDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQI 78 (85)
Q Consensus 40 LdERDkLle~LretQe~L~~~q~rL~eve~ErdsLqrQl 78 (85)
++|.+|+.+.|....+.....+.++..++.-|++|--++
T Consensus 158 ~~eQ~~I~~~l~~id~~i~~~~~~~~~l~~~k~~Ll~~l 196 (205)
T d1yf2a2 158 LEEQKQIAKILSSVDKSIELKKQKKEKLQRMKKKIMELL 196 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999888888888888888888888776543
No 4
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=65.37 E-value=5.8 Score=25.16 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhC
Q psy2906 47 LDNLRETQDRLSETSGKLSMVEKERDSLQRQIAASL 82 (85)
Q Consensus 47 le~LretQe~L~~~q~rL~eve~ErdsLqrQl~~~l 82 (85)
+..+++.++.+..+..++.++-++.+.|..++..+|
T Consensus 90 ~~~i~~Le~E~~~~~~el~~~v~e~e~ll~~i~~~i 125 (129)
T d1ykhb1 90 LRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMI 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888888888888888899999988888754
No 5
>d1yf2a1 d.287.1.2 (A:1-220) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=59.38 E-value=15 Score=22.42 Aligned_cols=40 Identities=10% Similarity=0.293 Sum_probs=33.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2906 40 FDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (85)
Q Consensus 40 LdERDkLle~LretQe~L~~~q~rL~eve~ErdsLqrQl~ 79 (85)
++|..++.+.|.......+..+..++.+..-|++|-.++=
T Consensus 168 ~~eQ~~I~~~l~~i~~~i~~~~~~i~~L~~~r~~ll~~l~ 207 (220)
T d1yf2a1 168 LEEQKQIAKILTKIDEGIEIIEKSINKLERIKKGLMHKLL 207 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5899999999998888888888889888888888876553
No 6
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.97 E-value=7.2 Score=22.15 Aligned_cols=25 Identities=24% Similarity=0.202 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Q psy2906 50 LRETQDRLSETSGKLSMVEKERDSL 74 (85)
Q Consensus 50 LretQe~L~~~q~rL~eve~ErdsL 74 (85)
+.+...++.+....+..+++|||..
T Consensus 3 ~~~L~~ei~elk~~v~~lEkERdFY 27 (59)
T d1wu9a1 3 AAELMQQVNVLKLTVEDLEKERDFY 27 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777788899999864
No 7
>d1ydxa2 d.287.1.2 (A:194-374) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=47.45 E-value=24 Score=20.73 Aligned_cols=50 Identities=18% Similarity=0.150 Sum_probs=38.4
Q ss_pred cChHHHHHHH---hhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy2906 29 DANFEQLMVT---MFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQI 78 (85)
Q Consensus 29 ~~nfEqLMvn---MLdERDkLle~LretQe~L~~~q~rL~eve~ErdsLqrQl 78 (85)
...+.++.+. =|+|-.|+.+.|....+.+...+.+++.++.-|++|-.++
T Consensus 124 ~~~l~~~~i~~~P~l~eQ~~I~~~l~~~d~~i~~~~~~i~~l~~lk~~Ll~~l 176 (181)
T d1ydxa2 124 LKLAGEIKVPYVKSFQLQRKAGKIVFLLDQKLDQYKKELSSLTVIRDTLLKKL 176 (181)
T ss_dssp HHHHHTCEEEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455554333 3688889999999888899999999999999999886654
No 8
>d2fzta1 a.46.3.1 (A:1-78) Hypothetical protein TM0693 {Thermotoga maritima [TaxId: 2336]}
Probab=46.91 E-value=15 Score=22.04 Aligned_cols=49 Identities=20% Similarity=0.518 Sum_probs=31.5
Q ss_pred ChHHHHHHHhhhhhHHHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHh
Q psy2906 30 ANFEQLMVTMFDEKDKLLDNLRETQD--RLSETSGKLSMVEKERDSLQRQIA 79 (85)
Q Consensus 30 ~nfEqLMvnMLdERDkLle~LretQe--~L~~~q~rL~eve~ErdsLqrQl~ 79 (85)
..||-| -+.|+.|.+||..|-+..- -+.--..|+.-+++...+|.++++
T Consensus 17 EDyE~L-~~LL~kReell~~Lp~~~L~ei~EkD~kR~e~i~k~~~~L~q~~~ 67 (78)
T d2fzta1 17 EDYETL-LSLLNKRKELMEGLPKDKLSEILEKDRKRLEIIEKRKTALFQEIN 67 (78)
T ss_dssp TCHHHH-HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHH-HHHHHHHHHHHHHCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 346654 5789999999976654332 233344556667777777777665
No 9
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=39.75 E-value=32 Score=20.00 Aligned_cols=6 Identities=33% Similarity=0.429 Sum_probs=2.4
Q ss_pred hhhHHH
Q psy2906 41 DEKDKL 46 (85)
Q Consensus 41 dERDkL 46 (85)
.+|-++
T Consensus 35 ~~rr~l 40 (110)
T d1seta1 35 REVQEL 40 (110)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 334333
No 10
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=35.37 E-value=41 Score=20.07 Aligned_cols=37 Identities=5% Similarity=0.198 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy2906 41 DEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQ 77 (85)
Q Consensus 41 dERDkLle~LretQe~L~~~q~rL~eve~ErdsLqrQ 77 (85)
+||+.++.-|+...+--.....++.+...+-..++++
T Consensus 6 eE~~~i~~VL~r~~~l~~~E~~rl~~l~~~l~~~~~~ 42 (124)
T d1zbdb_ 6 EEKEIINRVIARAEKMETMEQERIGRLVDRLETMRKN 42 (124)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6788888877776655555566666666555555543
No 11
>d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus caldolyticus [TaxId: 1394]}
Probab=30.50 E-value=7.5 Score=21.20 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=25.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHhHHHH
Q psy2906 36 MVTMFDEKDKLLDNLRETQDRLSETSGKLSM 66 (85)
Q Consensus 36 MvnMLdERDkLle~LretQe~L~~~q~rL~e 66 (85)
|++..+-|..+=+.|++.......+|..|++
T Consensus 1 M~~~~~~~~~~g~~ik~~R~~~gltq~~lA~ 31 (77)
T d2b5aa1 1 MINEIEIKRKFGRTLKKIRTQKGVSQEELAD 31 (77)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 6777888888889999988888888887764
No 12
>d2id6a1 a.4.1.9 (A:1-75) Transcriptional regulator TM1030 {Thermotoga maritima [TaxId: 2336]}
Probab=27.27 E-value=33 Score=18.27 Aligned_cols=30 Identities=13% Similarity=0.212 Sum_probs=19.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy2906 39 MFDEKDKLLDNLRETQDRLSETSGKLSMVE 68 (85)
Q Consensus 39 MLdERDkLle~LretQe~L~~~q~rL~eve 68 (85)
|++-|++|+++..+.=..=+.....++++-
T Consensus 1 m~~rR~~Il~aa~~l~~~~G~~~~ti~~Ia 30 (75)
T d2id6a1 1 MLSKRDAILKAAVEVFGKKGYDRATTDEIA 30 (75)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCccccCHHHHH
Confidence 677889988887776555555555554443
No 13
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.93 E-value=48 Score=18.16 Aligned_cols=18 Identities=22% Similarity=0.517 Sum_probs=7.9
Q ss_pred HhHHHHHHHHHHHHHHHH
Q psy2906 61 SGKLSMVEKERDSLQRQI 78 (85)
Q Consensus 61 q~rL~eve~ErdsLqrQl 78 (85)
......+.++...|++++
T Consensus 60 ~~~~~~L~~~~~~L~~~l 77 (79)
T d1nlwa_ 60 VHQIDQLQREQRHLKRQL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333344444444444444
No 14
>d2csba5 a.267.1.1 (A:3-293) Topoisomerase V, catalytic domain {Methanopyrus kandleri [TaxId: 2320]}
Probab=23.99 E-value=46 Score=23.33 Aligned_cols=40 Identities=33% Similarity=0.492 Sum_probs=30.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHhh
Q psy2906 41 DEKDKLLDNLRETQDRLSETSGK-----LSMVEKERDSLQRQIAA 80 (85)
Q Consensus 41 dERDkLle~LretQe~L~~~q~r-----L~eve~ErdsLqrQl~~ 80 (85)
..||+|+|-|-|.-+.|.+--.| -=-|+|.||.+.|-|..
T Consensus 246 krrdrlleelyehleelserylrhpltrrwivehkrdimrryleq 290 (291)
T d2csba5 246 KRRDRLLEELYEHLEELSERYLRHPLTRRWIVEHKRDIMRRYLEQ 290 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHhhc
Confidence 56899999999888877765433 22689999999987653
No 15
>d1z0jb1 a.2.19.1 (B:734-784) FYVE finger-containing Rab5 effector protein rabenosyn-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.91 E-value=43 Score=18.35 Aligned_cols=21 Identities=38% Similarity=0.601 Sum_probs=17.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHH
Q psy2906 40 FDEKDKLLDNLRETQDRLSET 60 (85)
Q Consensus 40 LdERDkLle~LretQe~L~~~ 60 (85)
|||=+-|-+.|+|.|.+|+..
T Consensus 26 ~deve~ltenl~elk~tl~kq 46 (51)
T d1z0jb1 26 LDEVEVLTENLRELKHTLAKQ 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHh
Confidence 588888999999999998754
No 16
>d2cxfa1 a.256.1.1 (A:83-249) Rap2 interacting protein X (RUFY3) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.17 E-value=20 Score=22.47 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=20.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhHHH
Q psy2906 39 MFDEKDKLLDNLRETQDRLSETSGKLS 65 (85)
Q Consensus 39 MLdERDkLle~LretQe~L~~~q~rL~ 65 (85)
|=|||.+|+..+..+=.+|.+.....+
T Consensus 1 ~~~er~~Ll~~~k~~vk~l~~~~~~~~ 27 (167)
T d2cxfa1 1 MANERMNLMNMAKLSIKGLIESALNLG 27 (167)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 568999999988888777766544433
No 17
>d1t98a2 a.47.6.1 (A:119-281) Chromosome partition protein MukF (KicB), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=21.48 E-value=30 Score=23.13 Aligned_cols=18 Identities=44% Similarity=0.584 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHhHHH
Q psy2906 48 DNLRETQDRLSETSGKLS 65 (85)
Q Consensus 48 e~LretQe~L~~~q~rL~ 65 (85)
.||||.|++|..+-.||+
T Consensus 95 ~tLRELqdtL~aagd~lq 112 (163)
T d1t98a2 95 GTLRELQDTLEAAGDKLQ 112 (163)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhHHHH
Confidence 589999999988887766
Done!