BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2907
(88 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MD8|A Chain A, Monomeric Structure Of The Active Catalytic Domain Of
Complement Protease C1r
Length = 329
Score = 28.5 bits (62), Expect = 0.90, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 3 NMMCDVMPTISEDVVPGQRGSLFSGEDANFEQLMVT 38
NM C P++ +D G G +F+ D N ++ + T
Sbjct: 262 NMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVAT 297
>pdb|2QY0|B Chain B, Active Dimeric Structure Of The Catalytic Domain Of C1r
Reveals Enzyme-product Like Contacts
pdb|2QY0|D Chain D, Active Dimeric Structure Of The Catalytic Domain Of C1r
Reveals Enzyme-product Like Contacts
Length = 242
Score = 28.5 bits (62), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 3 NMMCDVMPTISEDVVPGQRGSLFSGEDANFEQLMVT 38
NM C P++ +D G G +F+ D N ++ + T
Sbjct: 173 NMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVAT 208
>pdb|1GPZ|A Chain A, The Crystal Structure Of The Zymogen Catalytic Domain Of
Complement Protease C1r
pdb|1GPZ|B Chain B, The Crystal Structure Of The Zymogen Catalytic Domain Of
Complement Protease C1r
Length = 399
Score = 28.5 bits (62), Expect = 0.98, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 3 NMMCDVMPTISEDVVPGQRGSLFSGEDANFEQLMVT 38
NM C P++ +D G G +F+ D N ++ + T
Sbjct: 330 NMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVAT 365
>pdb|1MD7|A Chain A, Monomeric Structure Of The Zymogen Of Complement Protease
C1r
Length = 328
Score = 28.5 bits (62), Expect = 1.00, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 3 NMMCDVMPTISEDVVPGQRGSLFSGEDANFEQLMVT 38
NM C P++ +D G G +F+ D N ++ + T
Sbjct: 262 NMFCAGHPSLKQDACQGDAGGVFAVRDPNTDRWVAT 297
>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
pdb|2XPI|D Chain D, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
Length = 597
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 15 DVVPGQRGSLFSGEDANFEQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSL 74
D+V S +S EDA F + + + K D LR +D LS +G +EK D L
Sbjct: 253 DLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING----LEKSSDLL 308
>pdb|1X1N|A Chain A, Structure Determination And Refinement At 1.8 A Resolution
Of Disproportionating Enzyme From Potato
Length = 524
Score = 25.4 bits (54), Expect = 7.5, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 16 VVPGQRG----SLFSGEDANF-EQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKE 70
V PG+RG S +SG+DAN L++++ + D L + E + L S + +
Sbjct: 71 VPPGKRGNEDGSPYSGQDANCGNTLLISLEELVDDGLLKMEELPEPLPTDRVNYSTISEI 130
Query: 71 RDSLQRQIAASL 82
+D L + A L
Sbjct: 131 KDPLITKAAKRL 142
>pdb|2AR0|A Chain A, Crystal Structure Of Type I Restriction Enzyme Ecoki M
Protein (Ec 2.1.1.72) (M.Ecoki)
pdb|2AR0|B Chain B, Crystal Structure Of Type I Restriction Enzyme Ecoki M
Protein (Ec 2.1.1.72) (M.Ecoki)
Length = 541
Score = 25.0 bits (53), Expect = 9.6, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 30 ANFEQLMVTMFDEKDKL-LDNLRETQDRLSETSGKLSMVEKERDSLQRQIAAS 81
A + L ++ +KD + D+L E +E G+L E D+L R++ AS
Sbjct: 460 AKSDSLDISWLKDKDSIDADSLPEPDVLAAEAXGELVQALSELDALXRELGAS 512
>pdb|2IIU|A Chain A, Crystal Structure Of A Putative Phou-Like Phosphate
Regulatory Protein (Np_719307.1) From Shewanella
Oneidensis Mr-1 At 2.28 A Resolution.
pdb|2IIU|B Chain B, Crystal Structure Of A Putative Phou-Like Phosphate
Regulatory Protein (Np_719307.1) From Shewanella
Oneidensis Mr-1 At 2.28 A Resolution.
pdb|2IIU|C Chain C, Crystal Structure Of A Putative Phou-Like Phosphate
Regulatory Protein (Np_719307.1) From Shewanella
Oneidensis Mr-1 At 2.28 A Resolution.
pdb|2OLT|A Chain A, Crystal Structure Of A Phou-Like Protein (So_3770) From
Shewanella Oneidensis Mr-1 At 2.00 A Resolution
pdb|2OLT|B Chain B, Crystal Structure Of A Phou-Like Protein (So_3770) From
Shewanella Oneidensis Mr-1 At 2.00 A Resolution
pdb|2OLT|C Chain C, Crystal Structure Of A Phou-Like Protein (So_3770) From
Shewanella Oneidensis Mr-1 At 2.00 A Resolution
Length = 227
Score = 25.0 bits (53), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 63 KLSMVEKERDSLQRQIAASLP 83
++S+ EK+ DSL+R+I +LP
Sbjct: 54 QISLAEKQGDSLKREIRLTLP 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,388,611
Number of Sequences: 62578
Number of extensions: 77682
Number of successful extensions: 297
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 291
Number of HSP's gapped (non-prelim): 12
length of query: 88
length of database: 14,973,337
effective HSP length: 56
effective length of query: 32
effective length of database: 11,468,969
effective search space: 367007008
effective search space used: 367007008
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)