BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2907
(88 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q13136|LIPA1_HUMAN Liprin-alpha-1 OS=Homo sapiens GN=PPFIA1 PE=1 SV=1
Length = 1202
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/88 (53%), Positives = 58/88 (65%), Gaps = 7/88 (7%)
Query: 4 MMCDVMPTISEDVVPGQRGSLFSGE-------DANFEQLMVTMFDEKDKLLDNLRETQDR 56
MMC+VMPTISE P G D++FEQLMV+M +E+D+LLD LRETQ+
Sbjct: 1 MMCEVMPTISEAEGPPGGGGGHGSGSPSQPDADSHFEQLMVSMLEERDRLLDTLRETQET 60
Query: 57 LSETSGKLSMVEKERDSLQRQIAASLPQ 84
L+ T GKL V ERDSLQRQ+ +LPQ
Sbjct: 61 LALTQGKLHEVGHERDSLQRQLNTALPQ 88
>sp|Q91Z79|LIPA3_RAT Liprin-alpha-3 OS=Rattus norvegicus GN=Ppfia3 PE=1 SV=2
Length = 1192
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 58/83 (69%), Gaps = 5/83 (6%)
Query: 4 MMCDVMPTISEDVVPGQRGSLFSGEDAN--FEQLMVTMFDEKDKLLDNLRETQDRLSETS 61
MMC+VMPTISED G+RGS +DA E+LMVTM E+++LL+ LRE QD L+
Sbjct: 1 MMCEVMPTISED---GRRGSALGPDDAGGELERLMVTMLTERERLLETLREAQDGLATAQ 57
Query: 62 GKLSMVEKERDSLQRQIAASLPQ 84
+L + E+DSLQRQ++ +LPQ
Sbjct: 58 LRLRELGHEKDSLQRQLSIALPQ 80
>sp|P60469|LIPA3_MOUSE Liprin-alpha-3 OS=Mus musculus GN=Ppfia3 PE=1 SV=1
Length = 1043
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 58/83 (69%), Gaps = 5/83 (6%)
Query: 4 MMCDVMPTISEDVVPGQRGSLFSGEDAN--FEQLMVTMFDEKDKLLDNLRETQDRLSETS 61
MMC+VMPTISED G+RGS ++A E+LMVTM E+++LL+ LRE QD L+
Sbjct: 1 MMCEVMPTISED---GRRGSALGPDEAGGELERLMVTMLTERERLLETLREAQDGLATAQ 57
Query: 62 GKLSMVEKERDSLQRQIAASLPQ 84
+L + E+DSLQRQ++ +LPQ
Sbjct: 58 LRLRELGHEKDSLQRQLSIALPQ 80
>sp|O75145|LIPA3_HUMAN Liprin-alpha-3 OS=Homo sapiens GN=PPFIA3 PE=1 SV=3
Length = 1194
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 58/83 (69%), Gaps = 5/83 (6%)
Query: 4 MMCDVMPTISEDVVPGQRGSLFSGEDAN--FEQLMVTMFDEKDKLLDNLRETQDRLSETS 61
MMC+VMPTISED G+RGS ++A E+LMVTM E+++LL+ LRE QD L+
Sbjct: 1 MMCEVMPTISED---GRRGSALGPDEAGGELERLMVTMLTERERLLETLREAQDGLATAQ 57
Query: 62 GKLSMVEKERDSLQRQIAASLPQ 84
+L + E+DSLQRQ++ +LPQ
Sbjct: 58 LRLRELGHEKDSLQRQLSIALPQ 80
>sp|Q8BSS9|LIPA2_MOUSE Liprin-alpha-2 OS=Mus musculus GN=Ppfia2 PE=1 SV=2
Length = 1257
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Query: 4 MMCDVMPTISED--VVPGQRGSLFSGEDANFEQLMVTMFDEKDKLLDNLRETQDRLSETS 61
MMC+VMPTI+ED + S S D++FEQLMV M DE+D+LLD LRETQ+ LS
Sbjct: 1 MMCEVMPTINEDTPMSQRGSQSSGSDSDSHFEQLMVNMLDERDRLLDTLRETQESLSLAQ 60
Query: 62 GKLSMVEKERDSLQRQIAASLPQ 84
+L V +RDSLQRQ+ ++LPQ
Sbjct: 61 QRLQDVIYDRDSLQRQLNSALPQ 83
>sp|O75334|LIPA2_HUMAN Liprin-alpha-2 OS=Homo sapiens GN=PPFIA2 PE=1 SV=2
Length = 1257
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Query: 4 MMCDVMPTISED--VVPGQRGSLFSGEDANFEQLMVTMFDEKDKLLDNLRETQDRLSETS 61
MMC+VMPTI+ED + S S D++FEQLMV M DE+D+LLD LRETQ+ LS
Sbjct: 1 MMCEVMPTINEDTPMSQRGSQSSGSDSDSHFEQLMVNMLDERDRLLDTLRETQESLSLAQ 60
Query: 62 GKLSMVEKERDSLQRQIAASLPQ 84
+L V +RDSLQRQ+ ++LPQ
Sbjct: 61 QRLQDVIYDRDSLQRQLNSALPQ 83
>sp|Q21049|LIPA_CAEEL Liprin-alpha OS=Caenorhabditis elegans GN=syd-2 PE=2 SV=1
Length = 1139
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Query: 3 NMMCDVMPTISEDVVPGQRGSLFSGEDA-NFEQLMVTMFDEKDKLLDNLRETQDRLSETS 61
N+ CD+MPTISED V G + D N EQLM+ M +++DKL + L + +L
Sbjct: 7 NINCDIMPTISEDGVDNG-GPIDEPSDRDNIEQLMMNMLEDRDKLQEQLENYKVQLENAG 65
Query: 62 GKLSMVEKERDSLQRQI---AASLPQ 84
+ VEKERD ++RQ +LPQ
Sbjct: 66 LRTKEVEKERDMMKRQFEVHTQNLPQ 91
>sp|A7KAM6|ATG17_PENCW Autophagy-related protein 17 OS=Penicillium chrysogenum (strain
ATCC 28089 / DSM 1075 / Wisconsin 54-1255) GN=atg17 PE=3
SV=1
Length = 554
Score = 33.9 bits (76), Expect = 0.28, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 33/68 (48%)
Query: 7 DVMPTISEDVVPGQRGSLFSGEDANFEQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSM 66
D MP I ++ L DA +++++ + + + D + E QDR++E
Sbjct: 284 DGMPNIGAEINANLNAPLDPMTDAEYQEMVAVLIKDAPEADDVVMEIQDRINEMESIFEQ 343
Query: 67 VEKERDSL 74
V+ +RD+L
Sbjct: 344 VQAQRDAL 351
>sp|A1R728|PDXT_ARTAT Glutamine amidotransferase subunit PdxT OS=Arthrobacter aurescens
(strain TC1) GN=pdxT PE=3 SV=2
Length = 233
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 58 SETSGKLSMVEKERDSLQRQIAASLPQVGRC 88
S T KLS + + RD LQ++IA LP G C
Sbjct: 63 STTIDKLSRIFEVRDPLQKRIAEGLPVYGSC 93
>sp|B5MFE9|OLFL3_XENLA Olfactomedin-like protein 3 OS=Xenopus laevis GN=olfml3 PE=1 SV=2
Length = 392
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 21 RGSLFSGEDANFEQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQ 77
+ S FSGE +F+ ++ M + +K D+LR + + T+ +++ +E+E D ++ Q
Sbjct: 46 QSSRFSGELRDFKNQVLKMLENIEKERDSLR---NEMENTNVRVNRLEREVDYIETQ 99
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,894,157
Number of Sequences: 539616
Number of extensions: 1067257
Number of successful extensions: 5542
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 5458
Number of HSP's gapped (non-prelim): 110
length of query: 88
length of database: 191,569,459
effective HSP length: 58
effective length of query: 30
effective length of database: 160,271,731
effective search space: 4808151930
effective search space used: 4808151930
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)