Query psy2907
Match_columns 88
No_of_seqs 70 out of 72
Neff 3.6
Searched_HMMs 46136
Date Fri Aug 16 20:38:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2907.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2907hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF15186 TEX13: Testis-express 93.2 0.23 5E-06 36.9 5.0 28 52-79 121-148 (152)
2 PF13152 DUF3967: Protein of u 92.0 0.17 3.7E-06 29.2 2.4 19 40-58 2-21 (34)
3 PF10224 DUF2205: Predicted co 88.9 1.9 4E-05 28.7 5.6 36 41-76 16-51 (80)
4 PF08826 DMPK_coil: DMPK coile 87.1 3.6 7.8E-05 26.1 5.9 37 43-79 13-49 (61)
5 PF15066 CAGE1: Cancer-associa 84.8 2.3 5E-05 36.8 5.4 38 42-79 384-421 (527)
6 PF05030 SSXT: SSXT protein (N 78.5 7.2 0.00016 25.2 4.8 37 36-77 11-47 (65)
7 PF15619 Lebercilin: Ciliary p 78.4 14 0.00029 27.7 7.0 48 27-74 54-101 (194)
8 PF10146 zf-C4H2: Zinc finger- 77.4 16 0.00034 28.2 7.2 47 31-77 36-82 (230)
9 PF08990 Docking: Erythronolid 74.3 6.4 0.00014 21.5 3.2 24 43-66 4-27 (27)
10 PRK07353 F0F1 ATP synthase sub 72.0 23 0.0005 23.9 6.3 39 36-74 30-69 (140)
11 PRK14472 F0F1 ATP synthase sub 70.6 26 0.00057 24.9 6.6 41 36-76 43-84 (175)
12 PF12352 V-SNARE_C: Snare regi 69.7 21 0.00046 21.3 5.3 38 39-76 3-40 (66)
13 PF15619 Lebercilin: Ciliary p 69.2 17 0.00036 27.2 5.5 49 31-79 107-160 (194)
14 PRK07352 F0F1 ATP synthase sub 67.4 32 0.0007 24.4 6.5 32 36-67 44-76 (174)
15 PRK14475 F0F1 ATP synthase sub 66.5 31 0.00068 24.4 6.3 39 36-74 35-74 (167)
16 PRK13460 F0F1 ATP synthase sub 65.8 33 0.00072 24.4 6.3 35 36-70 41-76 (173)
17 PRK08475 F0F1 ATP synthase sub 65.5 34 0.00074 24.5 6.3 34 36-69 47-81 (167)
18 TIGR00153 conserved hypothetic 65.3 50 0.0011 24.0 7.4 56 31-86 15-74 (216)
19 COG4913 Uncharacterized protei 64.8 14 0.00031 34.3 5.1 48 31-78 663-714 (1104)
20 CHL00019 atpF ATP synthase CF0 64.6 36 0.00077 24.4 6.3 40 36-75 49-89 (184)
21 PF00430 ATP-synt_B: ATP synth 64.4 33 0.0007 22.4 5.6 42 36-77 24-66 (132)
22 TIGR01144 ATP_synt_b ATP synth 63.3 43 0.00094 22.7 6.3 40 36-75 20-60 (147)
23 COG0711 AtpF F0F1-type ATP syn 63.3 38 0.00083 24.1 6.2 43 36-78 31-74 (161)
24 PRK00888 ftsB cell division pr 62.5 23 0.00051 23.9 4.8 30 50-79 29-58 (105)
25 PRK09174 F0F1 ATP synthase sub 61.6 40 0.00087 25.2 6.3 37 36-72 78-115 (204)
26 PF04977 DivIC: Septum formati 61.1 32 0.00068 20.6 4.8 30 50-79 19-48 (80)
27 PF05400 FliT: Flagellar prote 61.0 33 0.00073 20.5 6.8 18 35-52 12-29 (84)
28 COG1677 FliE Flagellar hook-ba 61.0 24 0.00052 24.2 4.6 39 29-67 33-72 (105)
29 PRK05759 F0F1 ATP synthase sub 60.7 51 0.0011 22.5 6.5 40 36-75 29-69 (156)
30 KOG0018|consensus 60.5 42 0.00091 31.9 7.3 54 19-76 641-697 (1141)
31 PRK13461 F0F1 ATP synthase sub 60.0 52 0.0011 22.9 6.3 30 36-65 30-60 (159)
32 CHL00118 atpG ATP synthase CF0 59.2 53 0.0011 23.0 6.3 39 36-74 47-86 (156)
33 PF14193 DUF4315: Domain of un 59.0 32 0.0007 22.9 4.8 31 44-74 4-34 (83)
34 KOG3227|consensus 58.7 16 0.00034 28.9 3.8 38 36-78 25-62 (231)
35 PF07795 DUF1635: Protein of u 58.6 39 0.00084 26.3 5.9 42 39-80 3-58 (214)
36 PRK14474 F0F1 ATP synthase sub 58.6 51 0.0011 25.2 6.6 38 36-73 30-68 (250)
37 PF08912 Rho_Binding: Rho Bind 58.4 47 0.001 21.7 5.4 43 37-79 6-48 (69)
38 PF06673 L_lactis_ph-MCP: Lact 58.2 21 0.00046 28.9 4.5 44 42-85 5-48 (347)
39 PRK13455 F0F1 ATP synthase sub 58.2 53 0.0012 23.5 6.3 35 37-71 53-88 (184)
40 PF00261 Tropomyosin: Tropomyo 57.1 64 0.0014 24.1 6.7 44 36-79 3-46 (237)
41 PRK09173 F0F1 ATP synthase sub 56.4 61 0.0013 22.5 6.2 39 36-74 27-66 (159)
42 PF15294 Leu_zip: Leucine zipp 55.8 47 0.001 26.7 6.1 33 30-62 149-181 (278)
43 PF09766 FimP: Fms-interacting 55.5 64 0.0014 25.9 6.9 51 29-79 85-139 (355)
44 PF13851 GAS: Growth-arrest sp 55.4 77 0.0017 23.6 6.9 17 64-80 116-132 (201)
45 PF11221 Med21: Subunit 21 of 55.4 35 0.00075 24.0 4.8 35 47-81 103-137 (144)
46 PRK11637 AmiB activator; Provi 54.5 79 0.0017 25.4 7.3 32 45-76 79-110 (428)
47 PF14257 DUF4349: Domain of un 54.2 49 0.0011 24.7 5.7 43 37-79 142-186 (262)
48 PF02403 Seryl_tRNA_N: Seryl-t 54.0 28 0.00062 22.6 4.0 35 41-75 67-101 (108)
49 PF07445 priB_priC: Primosomal 53.9 84 0.0018 22.9 7.2 49 31-79 116-169 (173)
50 PF13851 GAS: Growth-arrest sp 53.4 72 0.0016 23.7 6.5 46 31-76 45-90 (201)
51 PRK13453 F0F1 ATP synthase sub 52.7 82 0.0018 22.4 6.5 40 36-75 43-83 (173)
52 PRK14473 F0F1 ATP synthase sub 52.5 78 0.0017 22.1 6.3 32 36-67 33-65 (164)
53 PRK06231 F0F1 ATP synthase sub 52.3 72 0.0016 23.7 6.3 38 36-73 73-111 (205)
54 PF11461 RILP: Rab interacting 51.9 15 0.00032 23.4 2.2 18 62-79 3-20 (60)
55 PF09789 DUF2353: Uncharacteri 51.6 52 0.0011 26.8 5.8 36 41-76 126-168 (319)
56 TIGR02209 ftsL_broad cell divi 51.3 54 0.0012 20.2 4.8 31 49-79 25-55 (85)
57 PF05384 DegS: Sensor protein 50.0 56 0.0012 24.0 5.3 35 45-79 81-115 (159)
58 PRK10093 primosomal replicatio 49.6 1.1E+02 0.0024 23.0 7.2 50 30-79 112-167 (171)
59 smart00030 CLb CLUSTERIN Beta 48.7 59 0.0013 25.3 5.5 34 41-74 43-76 (206)
60 TIGR03495 phage_LysB phage lys 48.5 45 0.00098 24.0 4.6 34 51-84 71-104 (135)
61 PF05911 DUF869: Plant protein 47.9 68 0.0015 29.0 6.4 44 36-79 111-158 (769)
62 TIGR01834 PHA_synth_III_E poly 47.0 99 0.0021 25.3 6.8 45 36-80 262-314 (320)
63 KOG1962|consensus 46.5 63 0.0014 25.1 5.4 37 43-79 153-189 (216)
64 PF04380 BMFP: Membrane fusoge 46.4 78 0.0017 20.3 5.4 41 29-69 30-78 (79)
65 TIGR02492 flgK_ends flagellar 46.2 15 0.00033 28.6 2.0 15 39-53 196-210 (322)
66 PRK11637 AmiB activator; Provi 46.0 75 0.0016 25.6 5.9 33 46-78 73-105 (428)
67 PRK15366 type III secretion sy 45.9 48 0.001 22.4 4.1 25 41-65 16-40 (80)
68 PRK10265 chaperone-modulator p 45.6 36 0.00078 22.6 3.5 24 35-58 72-95 (101)
69 PF14584 DUF4446: Protein of u 45.4 84 0.0018 22.7 5.6 39 28-66 40-78 (151)
70 PRK00409 recombination and DNA 45.3 99 0.0021 27.5 7.0 48 29-76 515-562 (782)
71 KOG3047|consensus 45.1 64 0.0014 24.1 5.0 31 38-69 34-64 (157)
72 COG1196 Smc Chromosome segrega 44.9 65 0.0014 29.5 5.9 41 41-81 172-212 (1163)
73 TIGR03321 alt_F1F0_F0_B altern 44.4 1.1E+02 0.0024 23.0 6.3 32 36-67 30-62 (246)
74 PF11932 DUF3450: Protein of u 43.6 1E+02 0.0022 23.0 6.0 46 34-79 42-94 (251)
75 PF04111 APG6: Autophagy prote 43.0 93 0.002 24.6 5.9 45 31-75 47-91 (314)
76 PF01093 Clusterin: Clusterin; 42.7 92 0.002 26.5 6.2 38 41-78 37-74 (436)
77 KOG4286|consensus 42.3 33 0.00071 31.8 3.7 33 43-75 222-254 (966)
78 PRK14471 F0F1 ATP synthase sub 41.3 1.2E+02 0.0026 21.1 6.3 32 36-67 33-65 (164)
79 PF15188 CCDC-167: Coiled-coil 41.0 95 0.0021 20.9 5.0 39 41-79 5-53 (85)
80 KOG4559|consensus 40.7 1.3E+02 0.0028 21.6 5.8 46 9-54 1-63 (120)
81 TIGR02449 conserved hypothetic 40.6 97 0.0021 19.9 4.7 33 36-68 30-62 (65)
82 KOG4398|consensus 40.4 99 0.0022 25.8 5.9 47 31-77 9-55 (359)
83 KOG2685|consensus 39.5 1.1E+02 0.0024 26.1 6.2 41 39-79 349-389 (421)
84 KOG0999|consensus 38.6 72 0.0016 28.9 5.1 39 41-79 149-187 (772)
85 PRK08147 flgK flagellar hook-a 37.6 23 0.00049 29.6 1.9 16 38-53 197-212 (547)
86 PF05911 DUF869: Plant protein 37.5 1.2E+02 0.0026 27.5 6.3 45 36-80 598-642 (769)
87 PF12777 MT: Microtubule-bindi 37.2 43 0.00093 26.4 3.3 34 45-78 225-258 (344)
88 PF09730 BicD: Microtubule-ass 37.1 91 0.002 28.1 5.6 37 43-79 78-114 (717)
89 PRK13454 F0F1 ATP synthase sub 35.8 1.7E+02 0.0036 21.1 6.2 33 36-68 56-89 (181)
90 PF11172 DUF2959: Protein of u 35.8 1.2E+02 0.0025 23.5 5.3 39 41-79 21-74 (201)
91 PRK06568 F0F1 ATP synthase sub 35.7 1.7E+02 0.0037 21.2 6.3 39 36-74 29-75 (154)
92 cd07633 BAR_OPHN1 The Bin/Amph 35.1 1.9E+02 0.0042 22.4 6.4 23 30-52 70-92 (207)
93 COG4026 Uncharacterized protei 35.1 1.1E+02 0.0024 24.8 5.2 39 41-79 149-187 (290)
94 TIGR01069 mutS2 MutS2 family p 34.8 1.5E+02 0.0032 26.5 6.4 47 29-75 510-556 (771)
95 PF11577 NEMO: NF-kappa-B esse 34.8 1.3E+02 0.0027 19.4 6.9 48 33-80 5-56 (68)
96 PRK07521 flgK flagellar hook-a 34.7 27 0.00058 28.9 1.8 15 39-53 190-204 (483)
97 TIGR03007 pepcterm_ChnLen poly 34.5 1.2E+02 0.0025 24.5 5.4 38 43-80 199-236 (498)
98 PF09730 BicD: Microtubule-ass 34.4 2E+02 0.0044 26.0 7.2 49 31-79 269-317 (717)
99 TIGR00219 mreC rod shape-deter 33.5 1.6E+02 0.0036 22.9 5.9 42 37-81 69-110 (283)
100 PRK06799 flgK flagellar hook-a 33.0 30 0.00064 28.4 1.8 16 38-53 197-212 (431)
101 PF12795 MscS_porin: Mechanose 33.0 1.6E+02 0.0035 21.8 5.6 42 36-77 26-67 (240)
102 TIGR01636 phage_rinA phage tra 32.7 1.6E+02 0.0036 20.1 5.6 35 29-65 50-84 (134)
103 KOG3650|consensus 32.5 1.2E+02 0.0027 21.7 4.6 36 41-76 56-91 (120)
104 PF15290 Syntaphilin: Golgi-lo 32.1 95 0.002 25.5 4.5 21 59-79 114-134 (305)
105 KOG1510|consensus 31.9 1.3E+02 0.0027 22.3 4.7 50 32-81 61-124 (139)
106 COG1256 FlgK Flagellar hook-as 31.9 31 0.00068 29.7 1.8 15 39-53 199-213 (552)
107 PF05278 PEARLI-4: Arabidopsis 31.4 2.7E+02 0.0058 22.4 6.8 44 36-79 209-252 (269)
108 PF15458 NTR2: Nineteen comple 31.1 1.5E+02 0.0033 22.8 5.3 34 44-77 211-244 (254)
109 COG5241 RAD10 Nucleotide excis 31.1 34 0.00075 26.8 1.8 19 27-45 4-22 (224)
110 PRK12714 flgK flagellar hook-a 31.0 35 0.00076 29.4 2.0 15 39-53 193-207 (624)
111 PRK07191 flgK flagellar hook-a 30.8 34 0.00075 28.1 1.8 15 39-53 195-209 (456)
112 KOG1760|consensus 30.8 1.7E+02 0.0037 21.4 5.2 36 43-78 79-118 (131)
113 PRK13729 conjugal transfer pil 30.5 1.6E+02 0.0036 25.4 5.9 26 55-80 97-122 (475)
114 KOG3000|consensus 30.4 92 0.002 25.2 4.1 36 44-79 194-229 (295)
115 PF14661 HAUS6_N: HAUS augmin- 30.2 2.2E+02 0.0047 21.5 6.0 40 36-78 169-208 (247)
116 PF08614 ATG16: Autophagy prot 30.0 1.9E+02 0.0041 20.9 5.4 6 66-71 169-174 (194)
117 PF14703 DUF4463: Domain of un 29.8 1.1E+02 0.0025 18.6 3.7 26 37-62 9-34 (85)
118 PF15294 Leu_zip: Leucine zipp 29.8 1.9E+02 0.0041 23.3 5.8 39 41-79 132-170 (278)
119 PF02050 FliJ: Flagellar FliJ 29.6 1.4E+02 0.003 18.3 5.2 35 45-79 2-36 (123)
120 PRK11281 hypothetical protein; 29.4 1.3E+02 0.0028 28.3 5.4 44 36-79 68-111 (1113)
121 PF06548 Kinesin-related: Kine 29.1 1.3E+02 0.0029 26.2 5.1 30 50-79 436-465 (488)
122 PRK10404 hypothetical protein; 28.9 1.5E+02 0.0032 20.1 4.4 26 41-66 38-63 (101)
123 PF09304 Cortex-I_coil: Cortex 28.8 2.1E+02 0.0046 20.1 6.0 40 40-79 36-75 (107)
124 PRK07739 flgK flagellar hook-a 28.7 41 0.00089 28.1 2.0 15 39-53 207-221 (507)
125 COG2960 Uncharacterized protei 28.4 1.2E+02 0.0025 21.4 3.9 41 29-69 39-87 (103)
126 PRK10722 hypothetical protein; 28.4 1.2E+02 0.0025 24.3 4.4 29 41-69 176-207 (247)
127 PRK10884 SH3 domain-containing 28.1 2E+02 0.0044 21.7 5.4 20 56-75 147-166 (206)
128 PF02388 FemAB: FemAB family; 28.1 2.9E+02 0.0062 22.3 6.6 48 31-78 239-289 (406)
129 PF12592 DUF3763: Protein of u 27.8 1.3E+02 0.0028 18.7 3.7 27 60-86 5-31 (57)
130 PRK06975 bifunctional uroporph 27.8 1.7E+02 0.0037 25.5 5.6 34 46-79 376-409 (656)
131 PF04012 PspA_IM30: PspA/IM30 27.6 2.4E+02 0.0052 20.4 7.2 49 31-79 95-143 (221)
132 PF11414 Suppressor_APC: Adeno 27.6 74 0.0016 21.1 2.7 12 64-75 9-20 (84)
133 COG1422 Predicted membrane pro 27.0 76 0.0016 24.6 3.0 19 44-62 75-93 (201)
134 PF14523 Syntaxin_2: Syntaxin- 27.0 1.7E+02 0.0036 18.4 5.3 29 41-69 30-58 (102)
135 cd07599 BAR_Rvs167p The Bin/Am 26.9 1.4E+02 0.003 21.7 4.2 31 54-84 148-178 (216)
136 PRK05683 flgK flagellar hook-a 26.7 45 0.00098 29.3 1.9 15 39-53 195-209 (676)
137 PRK06945 flgK flagellar hook-a 26.5 46 0.001 29.0 2.0 15 39-53 197-211 (651)
138 PRK12715 flgK flagellar hook-a 26.3 45 0.00097 29.2 1.9 16 38-53 190-205 (649)
139 PF06103 DUF948: Bacterial pro 26.1 1.8E+02 0.0038 18.3 5.3 20 49-68 27-46 (90)
140 PF03962 Mnd1: Mnd1 family; I 26.0 1.5E+02 0.0032 21.9 4.3 25 41-65 103-127 (188)
141 PRK08871 flgK flagellar hook-a 25.9 49 0.0011 28.8 2.0 16 38-53 194-209 (626)
142 KOG3119|consensus 25.6 2E+02 0.0043 22.3 5.1 27 53-79 213-239 (269)
143 PF07130 YebG: YebG protein; 25.5 1.9E+02 0.0041 19.2 4.3 31 41-71 26-56 (75)
144 PRK06665 flgK flagellar hook-a 25.4 47 0.001 28.7 1.8 15 39-53 207-221 (627)
145 TIGR02791 VirB5 P-type DNA tra 25.3 1.6E+02 0.0035 21.8 4.5 61 25-86 25-90 (220)
146 KOG2629|consensus 25.1 3.7E+02 0.0079 22.1 6.7 50 30-79 136-185 (300)
147 PF12325 TMF_TATA_bd: TATA ele 25.1 2.5E+02 0.0053 19.7 5.4 22 54-75 29-50 (120)
148 TIGR00634 recN DNA repair prot 25.0 2.6E+02 0.0056 23.5 6.0 40 40-79 160-199 (563)
149 PF09748 Med10: Transcription 24.6 2.3E+02 0.005 19.6 4.9 37 49-85 85-121 (128)
150 PLN03188 kinesin-12 family pro 24.4 1.6E+02 0.0035 28.6 5.1 31 49-79 1205-1235(1320)
151 TIGR03741 PRTRC_E PRTRC system 24.1 1.8E+02 0.004 20.0 4.2 36 29-64 57-92 (104)
152 PRK10869 recombination and rep 24.1 2.9E+02 0.0063 23.5 6.2 40 40-79 156-195 (553)
153 PF13870 DUF4201: Domain of un 23.9 2.7E+02 0.0058 19.7 7.0 31 48-78 98-128 (177)
154 KOG2483|consensus 23.8 2.3E+02 0.005 22.1 5.2 34 46-79 103-136 (232)
155 TIGR02231 conserved hypothetic 23.8 3.9E+02 0.0085 22.1 6.8 25 55-79 145-169 (525)
156 PF04822 Takusan: Takusan; In 23.6 2.3E+02 0.005 18.8 4.7 27 57-83 21-47 (84)
157 KOG3230|consensus 23.4 1.5E+02 0.0033 23.4 4.1 28 47-77 11-38 (224)
158 PRK07720 fliJ flagellar biosyn 23.3 2.5E+02 0.0054 19.1 6.0 39 42-80 17-55 (146)
159 PF14131 DUF4298: Domain of un 23.1 2.3E+02 0.0049 18.5 5.4 34 36-69 5-38 (90)
160 PRK06569 F0F1 ATP synthase sub 23.1 3.1E+02 0.0067 20.1 5.9 26 51-76 65-91 (155)
161 KOG1003|consensus 23.0 1.7E+02 0.0036 22.9 4.2 39 40-78 9-48 (205)
162 PF13600 DUF4140: N-terminal d 22.9 2.2E+02 0.0047 18.2 4.9 33 47-79 69-101 (104)
163 PF13815 Dzip-like_N: Iguana/D 22.6 2.5E+02 0.0054 18.9 6.1 47 31-77 62-109 (118)
164 PRK10884 SH3 domain-containing 22.6 3.2E+02 0.007 20.6 5.6 26 54-79 124-149 (206)
165 COG4942 Membrane-bound metallo 22.5 2.7E+02 0.0058 23.7 5.7 19 41-59 59-77 (420)
166 KOG4673|consensus 22.4 1.4E+02 0.0031 27.8 4.2 28 52-79 406-433 (961)
167 PF09726 Macoilin: Transmembra 22.4 2.7E+02 0.0058 24.9 5.9 41 46-86 620-663 (697)
168 PRK09039 hypothetical protein; 22.4 2.4E+02 0.0053 22.5 5.2 35 48-82 151-185 (343)
169 COG4372 Uncharacterized protei 22.2 2.3E+02 0.0051 24.7 5.3 38 41-78 74-111 (499)
170 PF11315 Med30: Mediator compl 22.0 3.2E+02 0.0069 20.0 5.4 35 39-73 109-143 (150)
171 PF05600 DUF773: Protein of un 22.0 1.8E+02 0.004 24.7 4.6 38 42-79 433-470 (507)
172 PF04614 Pex19: Pex19 protein 21.5 3.1E+02 0.0068 21.0 5.5 46 26-71 118-170 (248)
173 PF06120 Phage_HK97_TLTM: Tail 21.5 4E+02 0.0087 21.5 6.3 41 39-79 72-112 (301)
174 PF09236 AHSP: Alpha-haemoglob 21.4 2.3E+02 0.0051 19.5 4.2 18 41-58 57-74 (89)
175 PF12808 Mto2_bdg: Micro-tubul 21.3 1.6E+02 0.0034 18.2 3.1 21 59-79 26-46 (52)
176 PF07888 CALCOCO1: Calcium bin 21.1 3E+02 0.0065 24.2 5.8 30 41-70 283-312 (546)
177 PF10805 DUF2730: Protein of u 20.9 2.7E+02 0.0058 18.6 4.7 31 49-79 66-96 (106)
178 PLN02678 seryl-tRNA synthetase 20.7 2.7E+02 0.0059 23.5 5.4 28 46-73 76-103 (448)
179 PRK10920 putative uroporphyrin 20.7 5E+02 0.011 21.6 7.2 36 44-79 88-123 (390)
180 PF12958 DUF3847: Protein of u 20.5 2.7E+02 0.0059 18.7 4.4 28 45-72 5-32 (86)
181 PF09304 Cortex-I_coil: Cortex 20.5 2.1E+02 0.0045 20.2 4.0 14 66-79 55-68 (107)
182 PF08826 DMPK_coil: DMPK coile 20.3 2.4E+02 0.0052 17.7 6.1 39 41-79 18-56 (61)
183 PF01865 PhoU_div: Protein of 20.2 1.3E+02 0.0029 21.3 3.1 32 55-86 40-71 (214)
184 PF00261 Tropomyosin: Tropomyo 20.2 3.8E+02 0.0082 20.0 5.7 36 44-79 172-207 (237)
185 PF09738 DUF2051: Double stran 20.0 1.3E+02 0.0028 24.2 3.2 23 41-63 226-248 (302)
No 1
>PF15186 TEX13: Testis-expressed sequence 13 protein family
Probab=93.16 E-value=0.23 Score=36.90 Aligned_cols=28 Identities=36% Similarity=0.401 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 52 ETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 52 etQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
|+.-+|..++..|+++.+|||.|...|-
T Consensus 121 eaa~qL~~~~a~L~~v~~ERD~Lr~kLl 148 (152)
T PF15186_consen 121 EAAFQLQLTQAALQEVQKERDLLRWKLL 148 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444788999999999999999998664
No 2
>PF13152 DUF3967: Protein of unknown function (DUF3967)
Probab=92.03 E-value=0.17 Score=29.18 Aligned_cols=19 Identities=32% Similarity=0.681 Sum_probs=15.2
Q ss_pred hhhhHH-HHHHHHHHHHHHH
Q psy2907 40 FDEKDK-LLDNLRETQDRLS 58 (88)
Q Consensus 40 LdERDK-LletLretQe~L~ 58 (88)
|++||+ ||.+|||.||+--
T Consensus 2 ~e~RD~~Lm~~iREiQE~Kk 21 (34)
T PF13152_consen 2 LEERDEQLMQTIREIQETKK 21 (34)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 578885 7899999998743
No 3
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=88.92 E-value=1.9 Score=28.72 Aligned_cols=36 Identities=31% Similarity=0.538 Sum_probs=33.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy2907 41 DEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQR 76 (88)
Q Consensus 41 dERDKLletLretQe~L~~~q~rL~eve~Erd~Lqr 76 (88)
++|++|.....+.|++|...-.|..+|..|.+.|..
T Consensus 16 e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~ 51 (80)
T PF10224_consen 16 EEKEELIQEILELQDSLEALSDRVEEVKEENEKLES 51 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999999999999999998875
No 4
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=87.05 E-value=3.6 Score=26.09 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 43 KDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 43 RDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
+.-|.+-|+.++.+...++.||++.+..+..|...+.
T Consensus 13 kQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~ 49 (61)
T PF08826_consen 13 KQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIE 49 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999888888765
No 5
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=84.82 E-value=2.3 Score=36.84 Aligned_cols=38 Identities=26% Similarity=0.441 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 42 EKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 42 ERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
|+.-+=-+|+..|+.|+.+|.+|+|..+|++.||-||.
T Consensus 384 EKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelk 421 (527)
T PF15066_consen 384 EKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELK 421 (527)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44445568999999999999999999999999999886
No 6
>PF05030 SSXT: SSXT protein (N-terminal region); InterPro: IPR007726 SSXT (also known as SYT or SS18) appears to function synergistically with RBM14 as a transcriptional coactivator []. The SSXT protein is involved in synovial sarcoma in humans. A SYT-SSX fusion gene resulting from the chromosomal translocation t(X;18) (p11;q11) is characteristic of synovial sarcomas. This translocation fuses the SSXT (SYT) gene from chromosome 18 to either of two homologous genes at Xp11, SSX1 or SSX2 []. This entry also includes SS18-like protein 1, a transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons [],[].
Probab=78.48 E-value=7.2 Score=25.21 Aligned_cols=37 Identities=27% Similarity=0.487 Sum_probs=30.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy2907 36 MVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQ 77 (88)
Q Consensus 36 MvnMLdERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQ 77 (88)
+-.||||.+.|....-|.|. .+|..|+..=...|+|-
T Consensus 11 IQk~LdEN~~LI~~I~e~qn-----~Gr~~Ec~qyq~~LhrN 47 (65)
T PF05030_consen 11 IQKMLDENDQLIQCIQEYQN-----KGRAQECVQYQQILHRN 47 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHH
Confidence 56799999999999999987 67888887766666663
No 7
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=78.42 E-value=14 Score=27.69 Aligned_cols=48 Identities=25% Similarity=0.264 Sum_probs=41.0
Q ss_pred CCcChHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy2907 27 GEDANFEQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSL 74 (88)
Q Consensus 27 ~~~~nfEQLMvnMLdERDKLletLretQe~L~~~q~rL~eve~Erd~L 74 (88)
+..+.+-|||-.+-+|=.-|-+.||.+|++.-.+..++++.+.+.-.+
T Consensus 54 ~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~ 101 (194)
T PF15619_consen 54 DTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKT 101 (194)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556899999999999999999999999999999999999555444333
No 8
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=77.39 E-value=16 Score=28.18 Aligned_cols=47 Identities=17% Similarity=0.357 Sum_probs=38.8
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy2907 31 NFEQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQ 77 (88)
Q Consensus 31 nfEQLMvnMLdERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQ 77 (88)
.+++.|--.+.||...+|.||....-+.....=++..+.||+..+..
T Consensus 36 e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~ 82 (230)
T PF10146_consen 36 EYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEK 82 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566888999999999999999998888888888777777776653
No 9
>PF08990 Docking: Erythronolide synthase docking; InterPro: IPR015083 The N-terminal docking domain found in modular polyketide synthase assumes an alpha-helical structure, wherein two alpha-helices are connected by a short loop. Two such N-terminal domains dimerise to form amphipathic parallel alpha-helical coiled coils: dimerisation is essential for protein function []. ; GO: 0016740 transferase activity, 0048037 cofactor binding; PDB: 2HG4_E.
Probab=74.34 E-value=6.4 Score=21.45 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHH
Q psy2907 43 KDKLLDNLRETQDRLSETSGKLSM 66 (88)
Q Consensus 43 RDKLletLretQe~L~~~q~rL~e 66 (88)
=|||.+-|+.+...|-.++.||.|
T Consensus 4 e~kLr~YLkr~t~eL~~~r~RLre 27 (27)
T PF08990_consen 4 EDKLRDYLKRVTAELRRARRRLRE 27 (27)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 379999999999999999999875
No 10
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=72.00 E-value=23 Score=23.87 Aligned_cols=39 Identities=21% Similarity=0.277 Sum_probs=24.3
Q ss_pred HHHhhhhhH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy2907 36 MVTMFDEKD-KLLDNLRETQDRLSETSGKLSMVEKERDSL 74 (88)
Q Consensus 36 MvnMLdERD-KLletLretQe~L~~~q~rL~eve~Erd~L 74 (88)
+.++|++|. ++.+.|.+..+....++..+.+.+......
T Consensus 30 i~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a 69 (140)
T PRK07353 30 VGKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASA 69 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777775 566777777766666666655544444433
No 11
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=70.61 E-value=26 Score=24.87 Aligned_cols=41 Identities=7% Similarity=0.179 Sum_probs=26.1
Q ss_pred HHHhhhhhH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy2907 36 MVTMFDEKD-KLLDNLRETQDRLSETSGKLSMVEKERDSLQR 76 (88)
Q Consensus 36 MvnMLdERD-KLletLretQe~L~~~q~rL~eve~Erd~Lqr 76 (88)
+.++|++|. ++.++|.++......++..+.+.+......+.
T Consensus 43 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ 84 (175)
T PRK14472 43 ILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADA 84 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778775 56677877777766666666555554444443
No 12
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=69.69 E-value=21 Score=21.30 Aligned_cols=38 Identities=21% Similarity=0.344 Sum_probs=27.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy2907 39 MFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQR 76 (88)
Q Consensus 39 MLdERDKLletLretQe~L~~~q~rL~eve~Erd~Lqr 76 (88)
++.|++.|-.+.+-.-+.+..+..=+.++..-|+.|++
T Consensus 3 l~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~ 40 (66)
T PF12352_consen 3 LLRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKR 40 (66)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777777777777777765
No 13
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=69.18 E-value=17 Score=27.20 Aligned_cols=49 Identities=27% Similarity=0.456 Sum_probs=35.9
Q ss_pred hHHHHHH-HhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHh
Q psy2907 31 NFEQLMV-TMFDEKDKLLDNLRETQDRLSETSGKLSMVEKER----DSLQRQIA 79 (88)
Q Consensus 31 nfEQLMv-nMLdERDKLletLretQe~L~~~q~rL~eve~Er----d~LqrQl~ 79 (88)
++++|.- .=|.||++|...|...+..+..+..+.+++++.- .+.+||+.
T Consensus 107 ~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~ 160 (194)
T PF15619_consen 107 HLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLA 160 (194)
T ss_pred HHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4556533 3578899999999999999999999988777643 34445554
No 14
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=67.42 E-value=32 Score=24.38 Aligned_cols=32 Identities=22% Similarity=0.540 Sum_probs=18.6
Q ss_pred HHHhhhhh-HHHHHHHHHHHHHHHHHHhHHHHH
Q psy2907 36 MVTMFDEK-DKLLDNLRETQDRLSETSGKLSMV 67 (88)
Q Consensus 36 MvnMLdER-DKLletLretQe~L~~~q~rL~ev 67 (88)
+.++|++| +++.+.|.++.+....++..+.+.
T Consensus 44 I~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~ 76 (174)
T PRK07352 44 LGKILEERREAILQALKEAEERLRQAAQALAEA 76 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666 566677776666655555554433
No 15
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=66.54 E-value=31 Score=24.41 Aligned_cols=39 Identities=26% Similarity=0.306 Sum_probs=24.9
Q ss_pred HHHhhhhh-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy2907 36 MVTMFDEK-DKLLDNLRETQDRLSETSGKLSMVEKERDSL 74 (88)
Q Consensus 36 MvnMLdER-DKLletLretQe~L~~~q~rL~eve~Erd~L 74 (88)
+.++|++| +++.+.|.++.....+++..+++.+......
T Consensus 35 i~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A 74 (167)
T PRK14475 35 LAGALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEA 74 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778777 4566777777777666666655555444443
No 16
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=65.80 E-value=33 Score=24.37 Aligned_cols=35 Identities=14% Similarity=0.265 Sum_probs=20.4
Q ss_pred HHHhhhhhH-HHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy2907 36 MVTMFDEKD-KLLDNLRETQDRLSETSGKLSMVEKE 70 (88)
Q Consensus 36 MvnMLdERD-KLletLretQe~L~~~q~rL~eve~E 70 (88)
+.++|++|. ++...|.++.+....++..+.+.++.
T Consensus 41 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~ 76 (173)
T PRK13460 41 ILKALDERASGVQNDINKASELRLEAEALLKDYEAR 76 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778875 55566666666555555554444333
No 17
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=65.46 E-value=34 Score=24.46 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=19.5
Q ss_pred HHHhhhhhH-HHHHHHHHHHHHHHHHHhHHHHHHH
Q psy2907 36 MVTMFDEKD-KLLDNLRETQDRLSETSGKLSMVEK 69 (88)
Q Consensus 36 MvnMLdERD-KLletLretQe~L~~~q~rL~eve~ 69 (88)
+.++|++|. ++-+.|.++.+....++..+++.+.
T Consensus 47 i~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~ 81 (167)
T PRK08475 47 LKNFYKSRINKISKRLEEIQEKLKESKEKKEDALK 81 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667775 5566666666655555555443333
No 18
>TIGR00153 conserved hypothetical protein TIGR00153. An apparent homolog with a suggested function is Pit accessory protein from Sinorhizobium meliloti, which may be involved in phosphate (Pi) transport.
Probab=65.32 E-value=50 Score=24.01 Aligned_cols=56 Identities=18% Similarity=0.222 Sum_probs=42.1
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHHHHHhhcCCCCC
Q psy2907 31 NFEQLMVTMFDEKDKLLDNLRETQ----DRLSETSGKLSMVEKERDSLQRQIAASLPQVG 86 (88)
Q Consensus 31 nfEQLMvnMLdERDKLletLretQ----e~L~~~q~rL~eve~Erd~LqrQl~~~lPqef 86 (88)
.|++.+-...+-=..|.+.+.... ........+++++||+=|.+.|.+-..||+.|
T Consensus 15 ~l~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~I~~lE~eaD~i~~~i~~~L~~~f 74 (216)
T TIGR00153 15 NERQHIEKVGECVQLLIKSFELLKSGNNEKDEELRKEIIEIEHEADEIKREIRLNLEKGA 74 (216)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 788877666666555555555443 14567788899999999999999999998865
No 19
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.83 E-value=14 Score=34.31 Aligned_cols=48 Identities=23% Similarity=0.342 Sum_probs=36.2
Q ss_pred hHHHH----HHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy2907 31 NFEQL----MVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQI 78 (88)
Q Consensus 31 nfEQL----MvnMLdERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl 78 (88)
||+++ .+--+.|++|++|.|..|++.++.++..|...+..--.|-||.
T Consensus 663 ~fa~ID~~Sa~rqIael~~~lE~L~~t~~~~~~~~~~l~aaQT~~~vler~~ 714 (1104)
T COG4913 663 NFASIDLPSAQRQIAELQARLERLTHTQSDIAIAKAALDAAQTRQKVLERQY 714 (1104)
T ss_pred chhhcchhhHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666 4556799999999999999999988888776655544444443
No 20
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=64.61 E-value=36 Score=24.43 Aligned_cols=40 Identities=18% Similarity=0.407 Sum_probs=25.9
Q ss_pred HHHhhhhh-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy2907 36 MVTMFDEK-DKLLDNLRETQDRLSETSGKLSMVEKERDSLQ 75 (88)
Q Consensus 36 MvnMLdER-DKLletLretQe~L~~~q~rL~eve~Erd~Lq 75 (88)
+.++|++| +++.+.|.++.+....++..+++.+......+
T Consensus 49 I~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~ 89 (184)
T CHL00019 49 LSDLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAE 89 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666776 45677788777777777766665555444443
No 21
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=64.39 E-value=33 Score=22.42 Aligned_cols=42 Identities=19% Similarity=0.313 Sum_probs=24.9
Q ss_pred HHHhhhhh-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy2907 36 MVTMFDEK-DKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQ 77 (88)
Q Consensus 36 MvnMLdER-DKLletLretQe~L~~~q~rL~eve~Erd~LqrQ 77 (88)
+.+.|++| +++...+.+++.....++..+.+.++.....+.+
T Consensus 24 i~~~l~~R~~~I~~~~~~a~~~~~ea~~~~~e~~~~l~~a~~e 66 (132)
T PF00430_consen 24 IKKFLDERKAKIQSELEEAEELKEEAEQLLAEYEEKLAEAREE 66 (132)
T ss_dssp HHHHCS--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566665 4566677777777777777766666665555543
No 22
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=63.26 E-value=43 Score=22.70 Aligned_cols=40 Identities=10% Similarity=0.137 Sum_probs=25.4
Q ss_pred HHHhhhhhH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy2907 36 MVTMFDEKD-KLLDNLRETQDRLSETSGKLSMVEKERDSLQ 75 (88)
Q Consensus 36 MvnMLdERD-KLletLretQe~L~~~q~rL~eve~Erd~Lq 75 (88)
+.++|++|. ++.+.|.++.+....++..+.+.+......+
T Consensus 20 i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~~l~~A~ 60 (147)
T TIGR01144 20 LAKAIETRQKKIADGLASAERAKKEAALAQKKAQVILKEAK 60 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567787774 5667777777777666666555554444333
No 23
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=63.26 E-value=38 Score=24.12 Aligned_cols=43 Identities=26% Similarity=0.397 Sum_probs=33.9
Q ss_pred HHHhhhhhH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy2907 36 MVTMFDEKD-KLLDNLRETQDRLSETSGKLSMVEKERDSLQRQI 78 (88)
Q Consensus 36 MvnMLdERD-KLletLretQe~L~~~q~rL~eve~Erd~LqrQl 78 (88)
+.+.||+|. ++-+.|.+++....+++.-+.+++.++...++|-
T Consensus 31 i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a 74 (161)
T COG0711 31 ILKALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQA 74 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678875 6778899999998888888888888888777653
No 24
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=62.53 E-value=23 Score=23.93 Aligned_cols=30 Identities=13% Similarity=0.213 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 50 LRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 50 LretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
.++.+.+++..+.+++++..+++.|++++.
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~ 58 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEID 58 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777777777777777777665
No 25
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=61.63 E-value=40 Score=25.17 Aligned_cols=37 Identities=14% Similarity=0.294 Sum_probs=22.7
Q ss_pred HHHhhhhh-HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy2907 36 MVTMFDEK-DKLLDNLRETQDRLSETSGKLSMVEKERD 72 (88)
Q Consensus 36 MvnMLdER-DKLletLretQe~L~~~q~rL~eve~Erd 72 (88)
+.++|++| +++-+.|.++.....+++..+++.+.+..
T Consensus 78 I~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~ 115 (204)
T PRK09174 78 IGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELA 115 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566776 56667777777766666666554444433
No 26
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=61.08 E-value=32 Score=20.64 Aligned_cols=30 Identities=17% Similarity=0.365 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 50 LRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 50 LretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
+...+..+...+.++++...+++.|+.++.
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~ 48 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIE 48 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666554
No 27
>PF05400 FliT: Flagellar protein FliT; InterPro: IPR008622 This entry represents the bacterial flagellar FliT family of dual-function proteins. Together with FlgN, FliT has been proposed to act as a substrate-specific export chaperone, facilitating the incorporation of the enterobacterial hook-associated axial proteins (HAPs) FlgK/FlgL and FliD into the growing flagellum []. FliT has also been shown to act as a transcriptional regulator in Salmonella typhimurium [].; GO: 0019861 flagellum; PDB: 3A7M_A 3H3M_B 3NKZ_C 2G42_A 2FZT_B.
Probab=61.04 E-value=33 Score=20.51 Aligned_cols=18 Identities=33% Similarity=0.580 Sum_probs=14.7
Q ss_pred HHHHhhhhhHHHHHHHHH
Q psy2907 35 LMVTMFDEKDKLLDNLRE 52 (88)
Q Consensus 35 LMvnMLdERDKLletLre 52 (88)
-+..++++|+.|++.|.+
T Consensus 12 ~l~~l~~~R~~ll~~l~~ 29 (84)
T PF05400_consen 12 ELEELLDERQELLERLFE 29 (84)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 356788999999988876
No 28
>COG1677 FliE Flagellar hook-basal body protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=61.04 E-value=24 Score=24.23 Aligned_cols=39 Identities=13% Similarity=0.224 Sum_probs=34.3
Q ss_pred cChHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhH-HHHH
Q psy2907 29 DANFEQLMVTMFDEKDKLLDNLRETQDRLSETSGK-LSMV 67 (88)
Q Consensus 29 ~~nfEQLMvnMLdERDKLletLretQe~L~~~q~r-L~ev 67 (88)
++.|.+...+++++=.+.+..-++..++.+..+.. |++|
T Consensus 33 ~~sF~~~L~~ai~~vn~~Q~~a~~~~~~~~~G~~~~l~dV 72 (105)
T COG1677 33 GASFAEVLKNAIDDVNDTQKKAEKASEAFILGQAGDLHDV 72 (105)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHH
Confidence 44899999999999999999999999999888777 7755
No 29
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=60.69 E-value=51 Score=22.51 Aligned_cols=40 Identities=15% Similarity=0.216 Sum_probs=24.1
Q ss_pred HHHhhhhhH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy2907 36 MVTMFDEKD-KLLDNLRETQDRLSETSGKLSMVEKERDSLQ 75 (88)
Q Consensus 36 MvnMLdERD-KLletLretQe~L~~~q~rL~eve~Erd~Lq 75 (88)
+.++|++|. ++.+.|.++......++..+++.+......+
T Consensus 29 i~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~ 69 (156)
T PRK05759 29 IMKALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEAR 69 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777774 5566677776666666666655554444433
No 30
>KOG0018|consensus
Probab=60.54 E-value=42 Score=31.87 Aligned_cols=54 Identities=24% Similarity=0.289 Sum_probs=31.6
Q ss_pred CCCCCCCCCCcChHHHHHHHhhhhhHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHH
Q psy2907 19 GQRGSLFSGEDANFEQLMVTMFDEKDKLLDNLRETQDR---LSETSGKLSMVEKERDSLQR 76 (88)
Q Consensus 19 ~~~~~~~~~~~~nfEQLMvnMLdERDKLletLretQe~---L~~~q~rL~eve~Erd~Lqr 76 (88)
+||+++..=++-.|.|||- -|+||++.|++.|.+ +...++++..++..+-.++.
T Consensus 641 sGG~s~~~wdek~~~~L~~----~k~rl~eel~ei~~~~~e~~~v~~~i~~le~~~~~~~~ 697 (1141)
T KOG0018|consen 641 SGGSSGAKWDEKEVDQLKE----KKERLLEELKEIQKRRKEVSSVESKIHGLEMRLKYSKL 697 (1141)
T ss_pred cCCccCCCcCHHHHHHHHH----HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4444432234568888885 599999999998873 22333344444444444433
No 31
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=59.97 E-value=52 Score=22.86 Aligned_cols=30 Identities=3% Similarity=0.189 Sum_probs=17.6
Q ss_pred HHHhhhhhH-HHHHHHHHHHHHHHHHHhHHH
Q psy2907 36 MVTMFDEKD-KLLDNLRETQDRLSETSGKLS 65 (88)
Q Consensus 36 MvnMLdERD-KLletLretQe~L~~~q~rL~ 65 (88)
+.++|++|. ++-..|.++.+....++..+.
T Consensus 30 i~~~l~~R~~~I~~~l~~A~~~~~eA~~~~~ 60 (159)
T PRK13461 30 IKAVIDSRQSEIDNKIEKADEDQKKARELKL 60 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788875 455566665555554444443
No 32
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=59.16 E-value=53 Score=22.99 Aligned_cols=39 Identities=18% Similarity=0.311 Sum_probs=23.3
Q ss_pred HHHhhhhhH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy2907 36 MVTMFDEKD-KLLDNLRETQDRLSETSGKLSMVEKERDSL 74 (88)
Q Consensus 36 MvnMLdERD-KLletLretQe~L~~~q~rL~eve~Erd~L 74 (88)
+.++|++|. ++-+.|.++.+...+++..+.+.+......
T Consensus 47 i~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A 86 (156)
T CHL00118 47 LLKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKA 86 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667775 556677777766666666655544444333
No 33
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=58.97 E-value=32 Score=22.87 Aligned_cols=31 Identities=16% Similarity=0.442 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy2907 44 DKLLDNLRETQDRLSETSGKLSMVEKERDSL 74 (88)
Q Consensus 44 DKLletLretQe~L~~~q~rL~eve~Erd~L 74 (88)
+||..-+..|.+..++.|.||++++..+-.+
T Consensus 4 eKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~ 34 (83)
T PF14193_consen 4 EKIRAEIEKTKEKIAELQARLKELEAQKTEA 34 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888889999999999999888766544
No 34
>KOG3227|consensus
Probab=58.73 E-value=16 Score=28.88 Aligned_cols=38 Identities=32% Similarity=0.525 Sum_probs=31.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy2907 36 MVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQI 78 (88)
Q Consensus 36 MvnMLdERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl 78 (88)
+--||||.++|.-.+-|.|. -.|+.||-.-.-.|+|-|
T Consensus 25 IQk~LdEN~~LI~~I~e~Qn-----~Gk~~EC~qyq~~LhrNL 62 (231)
T KOG3227|consen 25 IQKMLDENKHLIQCIVESQN-----KGKLSECAQYQALLHRNL 62 (231)
T ss_pred HHHHHHhhhHHHHHHHHhhc-----cchHHHHHHHHHHHHHhH
Confidence 56799999999999999885 578888888777787744
No 35
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=58.65 E-value=39 Score=26.28 Aligned_cols=42 Identities=24% Similarity=0.311 Sum_probs=26.7
Q ss_pred hhhhhHHHHHHHHHHH--------------HHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy2907 39 MFDEKDKLLDNLRETQ--------------DRLSETSGKLSMVEKERDSLQRQIAA 80 (88)
Q Consensus 39 MLdERDKLletLretQ--------------e~L~~~q~rL~eve~Erd~LqrQl~~ 80 (88)
|=|-|.+|+-+.-|.. +++...-.=|+.+-+|||..+.|+..
T Consensus 3 ~EELRq~Ll~TTlELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~ 58 (214)
T PF07795_consen 3 MEELRQKLLYTTLELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQK 58 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666554443 33333333366888999999998774
No 36
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=58.62 E-value=51 Score=25.19 Aligned_cols=38 Identities=8% Similarity=0.349 Sum_probs=23.1
Q ss_pred HHHhhhhhH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy2907 36 MVTMFDEKD-KLLDNLRETQDRLSETSGKLSMVEKERDS 73 (88)
Q Consensus 36 MvnMLdERD-KLletLretQe~L~~~q~rL~eve~Erd~ 73 (88)
+.++|++|. ++-+.|.++.+....++..+++.++....
T Consensus 30 i~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~ 68 (250)
T PRK14474 30 IIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQS 68 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788875 56667777777666665554444443333
No 37
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=58.39 E-value=47 Score=21.72 Aligned_cols=43 Identities=19% Similarity=0.369 Sum_probs=32.8
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 37 VTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 37 vnMLdERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
-++-.|.+-|...|++.|+.|......-+++..-+.++..+|+
T Consensus 6 ~~l~~EkeeL~~klk~~qeel~~~k~~~~~~~~ik~~~eK~L~ 48 (69)
T PF08912_consen 6 ANLAKEKEELNNKLKKQQEELQKLKEEEQEIEEIKAQYEKQLN 48 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566899999999999999988777666666666666666554
No 38
>PF06673 L_lactis_ph-MCP: Lactococcus lactis bacteriophage major capsid protein; InterPro: IPR009559 This family consists of several Lactococcus lactis bacteriophage major capsid proteins.
Probab=58.20 E-value=21 Score=28.86 Aligned_cols=44 Identities=23% Similarity=0.428 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcCCCC
Q psy2907 42 EKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIAASLPQV 85 (88)
Q Consensus 42 ERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~~~lPqe 85 (88)
|....+.+..|+-....+...|..|+-+||+.|+..-.+++|.|
T Consensus 5 etqemmkqaieagvkvreleakveelnkereelkkereanipse 48 (347)
T PF06673_consen 5 ETQEMMKQAIEAGVKVRELEAKVEELNKEREELKKEREANIPSE 48 (347)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Confidence 44455566666666667778889999999999999988888864
No 39
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=58.18 E-value=53 Score=23.46 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=21.0
Q ss_pred HHhhhhhH-HHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy2907 37 VTMFDEKD-KLLDNLRETQDRLSETSGKLSMVEKER 71 (88)
Q Consensus 37 vnMLdERD-KLletLretQe~L~~~q~rL~eve~Er 71 (88)
.++|++|. ++.+.|.++.+....++..+.+.+...
T Consensus 53 ~~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L 88 (184)
T PRK13455 53 GGMLDKRAEGIRSELEEARALREEAQTLLASYERKQ 88 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667764 566677777666666666555444433
No 40
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=57.14 E-value=64 Score=24.11 Aligned_cols=44 Identities=32% Similarity=0.444 Sum_probs=37.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 36 MVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 36 MvnMLdERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
|..+=++=|..-+.+..++..|..+..++..++.+-.+|+|.+.
T Consensus 3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~ 46 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQ 46 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777888899999999999999999999999999998665
No 41
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=56.42 E-value=61 Score=22.49 Aligned_cols=39 Identities=15% Similarity=0.295 Sum_probs=24.6
Q ss_pred HHHhhhhhH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy2907 36 MVTMFDEKD-KLLDNLRETQDRLSETSGKLSMVEKERDSL 74 (88)
Q Consensus 36 MvnMLdERD-KLletLretQe~L~~~q~rL~eve~Erd~L 74 (88)
+.++|++|. ++.+.|.++.+....++..+.+.+.+....
T Consensus 27 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~~~e~~L~~A 66 (159)
T PRK09173 27 IARSLDARADRIKNELAEARRLREEAQQLLAEYQRKRKEA 66 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567787774 566777777777666666555554444433
No 42
>PF15294 Leu_zip: Leucine zipper
Probab=55.80 E-value=47 Score=26.70 Aligned_cols=33 Identities=33% Similarity=0.505 Sum_probs=25.7
Q ss_pred ChHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh
Q psy2907 30 ANFEQLMVTMFDEKDKLLDNLRETQDRLSETSG 62 (88)
Q Consensus 30 ~nfEQLMvnMLdERDKLletLretQe~L~~~q~ 62 (88)
..+|..-..+|+|+.||-.+|.++|.-.+....
T Consensus 149 ~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~ 181 (278)
T PF15294_consen 149 KSLEKQATSALDEKSKLEAQLKELQDEQGDQKG 181 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 356777889999999999999999984444444
No 43
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=55.55 E-value=64 Score=25.92 Aligned_cols=51 Identities=24% Similarity=0.338 Sum_probs=36.2
Q ss_pred cChHHHHHHHhh----hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 29 DANFEQLMVTMF----DEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 29 ~~nfEQLMvnML----dERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
..+=-++|+.-| .+|-+|.+.+.+.+.+....+.-.+.-.+.-++|..+|.
T Consensus 85 ~~~~H~lml~RL~~EL~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~ 139 (355)
T PF09766_consen 85 EDDEHQLMLARLEFELEQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLK 139 (355)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 345568888887 799999999998888777766665555555555555444
No 44
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=55.45 E-value=77 Score=23.55 Aligned_cols=17 Identities=35% Similarity=0.618 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy2907 64 LSMVEKERDSLQRQIAA 80 (88)
Q Consensus 64 L~eve~Erd~LqrQl~~ 80 (88)
+..|+.|||.|.+.+..
T Consensus 116 ~~kle~ErdeL~~kf~~ 132 (201)
T PF13851_consen 116 FEKLEQERDELYRKFES 132 (201)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44566666666665553
No 45
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=55.42 E-value=35 Score=23.97 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Q psy2907 47 LDNLRETQDRLSETSGKLSMVEKERDSLQRQIAAS 81 (88)
Q Consensus 47 letLretQe~L~~~q~rL~eve~Erd~LqrQl~~~ 81 (88)
+..+++.++.+..+...++++-+|.+.|..++...
T Consensus 103 ~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 137 (144)
T PF11221_consen 103 LKRIKELEEENEEAEEELQEAVKEAEELLKQVQEL 137 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888889999999999999998887754
No 46
>PRK11637 AmiB activator; Provisional
Probab=54.49 E-value=79 Score=25.41 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy2907 45 KLLDNLRETQDRLSETSGKLSMVEKERDSLQR 76 (88)
Q Consensus 45 KLletLretQe~L~~~q~rL~eve~Erd~Lqr 76 (88)
.|...|..++..+..++.++++++++.+.++.
T Consensus 79 ~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~ 110 (428)
T PRK11637 79 KQEEAISQASRKLRETQNTLNQLNKQIDELNA 110 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444443
No 47
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=54.15 E-value=49 Score=24.71 Aligned_cols=43 Identities=28% Similarity=0.389 Sum_probs=30.1
Q ss_pred HHhhhhhHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 37 VTMFDEKDKLLDNLRET--QDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 37 vnMLdERDKLletLret--Qe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
-|.-.+++||++-|..+ -+.+...+.+|.+++-+.|+++.|+.
T Consensus 142 ~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~ 186 (262)
T PF14257_consen 142 KNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLK 186 (262)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446778888877655 34555777778888888888877665
No 48
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=54.04 E-value=28 Score=22.59 Aligned_cols=35 Identities=20% Similarity=0.418 Sum_probs=20.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy2907 41 DEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQ 75 (88)
Q Consensus 41 dERDKLletLretQe~L~~~q~rL~eve~Erd~Lq 75 (88)
++++.|.+...+..+.+......+.+++.+.+.+-
T Consensus 67 ~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 67 EDAEELKAEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666666666666665555443
No 49
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=53.91 E-value=84 Score=22.88 Aligned_cols=49 Identities=16% Similarity=0.399 Sum_probs=40.1
Q ss_pred hHHHHHHHhhhhhHHHHHH-----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 31 NFEQLMVTMFDEKDKLLDN-----LRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 31 nfEQLMvnMLdERDKLlet-----LretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
+||+=+..|..+|...+++ -...|..+..+++||.-|.+-...+-++|.
T Consensus 116 e~erRL~~mi~~~e~~l~~~~~~~~~~lq~ei~a~e~RL~RCr~Ai~~iE~~I~ 169 (173)
T PF07445_consen 116 EYERRLLAMIQEREQQLEQAQSFEQQQLQQEILALEQRLQRCRQAIEKIEEQIQ 169 (173)
T ss_pred HHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666799999999999884 345677899999999999888888877765
No 50
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=53.40 E-value=72 Score=23.71 Aligned_cols=46 Identities=28% Similarity=0.460 Sum_probs=38.2
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy2907 31 NFEQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQR 76 (88)
Q Consensus 31 nfEQLMvnMLdERDKLletLretQe~L~~~q~rL~eve~Erd~Lqr 76 (88)
.-+.+|-..--|..+|.+-|..++......+.+|+..++++-+|+.
T Consensus 45 ~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~ 90 (201)
T PF13851_consen 45 RNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQN 90 (201)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466788888889999999999999999998888888888887764
No 51
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=52.74 E-value=82 Score=22.44 Aligned_cols=40 Identities=5% Similarity=0.143 Sum_probs=25.4
Q ss_pred HHHhhhhhH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy2907 36 MVTMFDEKD-KLLDNLRETQDRLSETSGKLSMVEKERDSLQ 75 (88)
Q Consensus 36 MvnMLdERD-KLletLretQe~L~~~q~rL~eve~Erd~Lq 75 (88)
+..+|++|. ++.+.|.++.+....++..+++.+......+
T Consensus 43 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~ 83 (173)
T PRK13453 43 LKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQ 83 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777775 4557777777777776666665555444443
No 52
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=52.50 E-value=78 Score=22.09 Aligned_cols=32 Identities=9% Similarity=0.302 Sum_probs=18.9
Q ss_pred HHHhhhhhH-HHHHHHHHHHHHHHHHHhHHHHH
Q psy2907 36 MVTMFDEKD-KLLDNLRETQDRLSETSGKLSMV 67 (88)
Q Consensus 36 MvnMLdERD-KLletLretQe~L~~~q~rL~ev 67 (88)
+.++|++|. ++-+.|.++...-..++..+++.
T Consensus 33 i~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~ 65 (164)
T PRK14473 33 VLNLLNERTRRIEESLRDAEKVREQLANAKRDY 65 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778875 45566666665555555544433
No 53
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=52.34 E-value=72 Score=23.69 Aligned_cols=38 Identities=3% Similarity=0.177 Sum_probs=22.7
Q ss_pred HHHhhhhhH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy2907 36 MVTMFDEKD-KLLDNLRETQDRLSETSGKLSMVEKERDS 73 (88)
Q Consensus 36 MvnMLdERD-KLletLretQe~L~~~q~rL~eve~Erd~ 73 (88)
+.++|++|. ++-+.|.++++...+++..+.+.++....
T Consensus 73 i~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~ 111 (205)
T PRK06231 73 TQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHEN 111 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777775 45566777666666666665544444333
No 54
>PF11461 RILP: Rab interacting lysosomal protein; InterPro: IPR021563 RILP contains a domain which contains two coiled-coil regions and is found mainly in the cytosol. RILP is recruited onto late endosomal and lysosomal membranes by Rab7 and acts as a downstream effector of Rab7. This recruitment process is important for phagosome maturation and fusion with late endosomes and lysosomes. ; PDB: 1YHN_B.
Probab=51.94 E-value=15 Score=23.42 Aligned_cols=18 Identities=28% Similarity=0.409 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHh
Q psy2907 62 GKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 62 ~rL~eve~Erd~LqrQl~ 79 (88)
.-|++|.+||+.|+.++-
T Consensus 3 ~ELr~VL~ERNeLK~~v~ 20 (60)
T PF11461_consen 3 QELREVLQERNELKARVF 20 (60)
T ss_dssp TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 457889999999988764
No 55
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=51.55 E-value=52 Score=26.81 Aligned_cols=36 Identities=19% Similarity=0.444 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHH
Q psy2907 41 DEKDKLLDNLRETQDRLSETSGKLS-------MVEKERDSLQR 76 (88)
Q Consensus 41 dERDKLletLretQe~L~~~q~rL~-------eve~Erd~Lqr 76 (88)
+||.+|+.+|...+.+....+.-++ |+..|||..+.
T Consensus 126 ~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~ 168 (319)
T PF09789_consen 126 HEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKC 168 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888887755 88889998875
No 56
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=51.33 E-value=54 Score=20.21 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 49 NLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 49 tLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
..+.++..+...+.++.+.+.|.+.|+.+++
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~ 55 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVA 55 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777888888888888888888887665
No 57
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=49.96 E-value=56 Score=23.97 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 45 KLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 45 KLletLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
+.++...+.|-.|...+.+-+.+...||.|.|.|.
T Consensus 81 ~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~ 115 (159)
T PF05384_consen 81 EAYEEAHELQVRLAMLREREKQLRERRDELERRLR 115 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777788888877788888888877554
No 58
>PRK10093 primosomal replication protein N''; Provisional
Probab=49.65 E-value=1.1e+02 Score=22.99 Aligned_cols=50 Identities=16% Similarity=0.334 Sum_probs=41.7
Q ss_pred ChHHHHHHHhhhhhHHHHHHH------HHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 30 ANFEQLMVTMFDEKDKLLDNL------RETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 30 ~nfEQLMvnMLdERDKLletL------retQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
-.||+=.+.|..+|...|++. ...|..|..+.+||.-+.+-...+.+++.
T Consensus 112 Qd~ERRL~~Mv~dre~~L~~a~~~~~qq~lq~el~alegRL~RCrqAl~~IE~~Ie 167 (171)
T PRK10093 112 QEFERRLLEMVAERRARLARATDLVEQQTLHREVEAYEGRLARCRHALEKIENVLA 167 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368888999999999999943 44688899999999999888877777765
No 59
>smart00030 CLb CLUSTERIN Beta chain.
Probab=48.66 E-value=59 Score=25.35 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=26.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy2907 41 DEKDKLLDNLRETQDRLSETSGKLSMVEKERDSL 74 (88)
Q Consensus 41 dERDKLletLretQe~L~~~q~rL~eve~Erd~L 74 (88)
+||-+||.+|.+|++.-.+|-...+|++.--..-
T Consensus 43 eeh~~ll~tLe~~kk~KeeAlk~~~e~e~kL~E~ 76 (206)
T smart00030 43 KERKSLLSTLEEAKKKKEEALKDTRESEEKLKES 76 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999988777777766666544333
No 60
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=48.49 E-value=45 Score=24.01 Aligned_cols=34 Identities=18% Similarity=0.425 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcCCC
Q psy2907 51 RETQDRLSETSGKLSMVEKERDSLQRQIAASLPQ 84 (88)
Q Consensus 51 retQe~L~~~q~rL~eve~Erd~LqrQl~~~lPq 84 (88)
..+...+..-+.++.++.+|.+.|++=-+++||-
T Consensus 71 ~~~~~~l~~re~~i~rL~~ENe~lR~Wa~t~LPd 104 (135)
T TIGR03495 71 AQARALLAQREQRIERLKRENEDLRRWADTPLPD 104 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHhcCCCcH
Confidence 3344445556677889999999999999999995
No 61
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=47.92 E-value=68 Score=29.04 Aligned_cols=44 Identities=27% Similarity=0.462 Sum_probs=37.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHh
Q psy2907 36 MVTMFDEKDKLLDNLRETQDRLS----ETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 36 MvnMLdERDKLletLretQe~L~----~~q~rL~eve~Erd~LqrQl~ 79 (88)
+...|.+|++++.-|.+..-+.. ..+.||.-++||.-+|+-.++
T Consensus 111 l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~ 158 (769)
T PF05911_consen 111 LSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELH 158 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999998876654 677899999999999997665
No 62
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=47.02 E-value=99 Score=25.29 Aligned_cols=45 Identities=13% Similarity=0.302 Sum_probs=32.6
Q ss_pred HHHhhhhhHHHHHHHHH--------HHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy2907 36 MVTMFDEKDKLLDNLRE--------TQDRLSETSGKLSMVEKERDSLQRQIAA 80 (88)
Q Consensus 36 MvnMLdERDKLletLre--------tQe~L~~~q~rL~eve~Erd~LqrQl~~ 80 (88)
.-.+++-|-.+-+...+ |+..+++++.||.|++++-..|+|+|..
T Consensus 262 vna~m~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~ 314 (320)
T TIGR01834 262 INALMRLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGD 314 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555444444443 5677899999999999999999999874
No 63
>KOG1962|consensus
Probab=46.46 E-value=63 Score=25.09 Aligned_cols=37 Identities=30% Similarity=0.439 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 43 KDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 43 RDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
-|++.+-+...++.|...+.+|...++..+.|+.|.+
T Consensus 153 ~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e 189 (216)
T KOG1962|consen 153 NDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSE 189 (216)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666677777777777778888888888888776
No 64
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=46.40 E-value=78 Score=20.33 Aligned_cols=41 Identities=20% Similarity=0.320 Sum_probs=35.3
Q ss_pred cChHHHHHHHhh--------hhhHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy2907 29 DANFEQLMVTMF--------DEKDKLLDNLRETQDRLSETSGKLSMVEK 69 (88)
Q Consensus 29 ~~nfEQLMvnML--------dERDKLletLretQe~L~~~q~rL~eve~ 69 (88)
..||...+-+.| ||=|-+-.-|..|++.|.....|++++|.
T Consensus 30 e~~~r~~l~~~l~kldlVtREEFd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 30 EKNIRARLQSALSKLDLVTREEFDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 478888888887 78888999999999999999999998874
No 65
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=46.22 E-value=15 Score=28.58 Aligned_cols=15 Identities=33% Similarity=0.669 Sum_probs=13.4
Q ss_pred hhhhhHHHHHHHHHH
Q psy2907 39 MFDEKDKLLDNLRET 53 (88)
Q Consensus 39 MLdERDKLletLret 53 (88)
+||+||+|++.|-+.
T Consensus 196 L~DqRD~ll~~LS~~ 210 (322)
T TIGR02492 196 LLDQRDLLLKELSQL 210 (322)
T ss_pred hHHHHHHHHHHHHhH
Confidence 889999999999764
No 66
>PRK11637 AmiB activator; Provisional
Probab=46.01 E-value=75 Score=25.56 Aligned_cols=33 Identities=30% Similarity=0.509 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy2907 46 LLDNLRETQDRLSETSGKLSMVEKERDSLQRQI 78 (88)
Q Consensus 46 LletLretQe~L~~~q~rL~eve~Erd~LqrQl 78 (88)
+...|...+.+|..++.++.+.+.+.+.++.++
T Consensus 73 ~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei 105 (428)
T PRK11637 73 LLAQLKKQEEAISQASRKLRETQNTLNQLNKQI 105 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444444444433
No 67
>PRK15366 type III secretion system chaperone SsaE; Provisional
Probab=45.88 E-value=48 Score=22.43 Aligned_cols=25 Identities=32% Similarity=0.582 Sum_probs=18.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHH
Q psy2907 41 DEKDKLLDNLRETQDRLSETSGKLS 65 (88)
Q Consensus 41 dERDKLletLretQe~L~~~q~rL~ 65 (88)
++-+.+++.|++.+.+|..+=++.+
T Consensus 16 ~~a~~~i~~L~aa~~rL~~al~~P~ 40 (80)
T PRK15366 16 EEAKGIILQLRAARKQLEENNGKLQ 40 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3347788888888888888766644
No 68
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=45.57 E-value=36 Score=22.61 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=20.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHH
Q psy2907 35 LMVTMFDEKDKLLDNLRETQDRLS 58 (88)
Q Consensus 35 LMvnMLdERDKLletLretQe~L~ 58 (88)
+++++||+.+.|-..++..+.+|.
T Consensus 72 lvl~LLd~i~~Lr~el~~L~~~l~ 95 (101)
T PRK10265 72 VALTLLDEIAHLKQENRLLRQRLS 95 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999888888877663
No 69
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=45.37 E-value=84 Score=22.71 Aligned_cols=39 Identities=33% Similarity=0.563 Sum_probs=31.4
Q ss_pred CcChHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHH
Q psy2907 28 EDANFEQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSM 66 (88)
Q Consensus 28 ~~~nfEQLMvnMLdERDKLletLretQe~L~~~q~rL~e 66 (88)
+..++|.+.....++=+.+.+.+.+.++++.....+++.
T Consensus 40 ~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (151)
T PF14584_consen 40 DGKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRN 78 (151)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345899999999988888888888888888877777653
No 70
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=45.25 E-value=99 Score=27.54 Aligned_cols=48 Identities=17% Similarity=0.295 Sum_probs=35.4
Q ss_pred cChHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy2907 29 DANFEQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQR 76 (88)
Q Consensus 29 ~~nfEQLMvnMLdERDKLletLretQe~L~~~q~rL~eve~Erd~Lqr 76 (88)
..++|.|+-.+=++|..+-+..++....+.+++...++++++++.|..
T Consensus 515 ~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~ 562 (782)
T PRK00409 515 KEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQE 562 (782)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899988888888887777777777777777766666666665554
No 71
>KOG3047|consensus
Probab=45.05 E-value=64 Score=24.10 Aligned_cols=31 Identities=29% Similarity=0.220 Sum_probs=20.8
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy2907 38 TMFDEKDKLLDNLRETQDRLSETSGKLSMVEK 69 (88)
Q Consensus 38 nMLdERDKLletLretQe~L~~~q~rL~eve~ 69 (88)
.-+||||||.+++.|+- .|-.+-.||.+.-|
T Consensus 34 k~~d~~dKl~eQ~aeY~-kLk~t~eRL~eaah 64 (157)
T KOG3047|consen 34 KEEDEFDKLQEQCAEYA-KLKFTCERLLEAAH 64 (157)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhch
Confidence 34599999999988763 45555556655444
No 72
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=44.89 E-value=65 Score=29.54 Aligned_cols=41 Identities=24% Similarity=0.378 Sum_probs=36.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Q psy2907 41 DEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIAAS 81 (88)
Q Consensus 41 dERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~~~ 81 (88)
..|.+....|+++++.|......+.++++.-+.|.+|.+.+
T Consensus 172 ~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a 212 (1163)
T COG1196 172 ERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKA 212 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788999999999999999999999999999999987754
No 73
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=44.45 E-value=1.1e+02 Score=22.97 Aligned_cols=32 Identities=13% Similarity=0.295 Sum_probs=18.9
Q ss_pred HHHhhhhhHH-HHHHHHHHHHHHHHHHhHHHHH
Q psy2907 36 MVTMFDEKDK-LLDNLRETQDRLSETSGKLSMV 67 (88)
Q Consensus 36 MvnMLdERDK-LletLretQe~L~~~q~rL~ev 67 (88)
+.++|++|.+ +-+.|.++.+...+++..+++.
T Consensus 30 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~ 62 (246)
T TIGR03321 30 ILDAMDAREKKIAGELADADTKKREAEQERREY 62 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888764 5556666666555554444433
No 74
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=43.59 E-value=1e+02 Score=23.05 Aligned_cols=46 Identities=26% Similarity=0.307 Sum_probs=28.9
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHh
Q psy2907 34 QLMVTMFDEKDKLLDNLRETQDRLSETSGK-------LSMVEKERDSLQRQIA 79 (88)
Q Consensus 34 QLMvnMLdERDKLletLretQe~L~~~q~r-------L~eve~Erd~LqrQl~ 79 (88)
+.+-..-+|+.+|+..++.....+...+.. +...+++.++|++|+.
T Consensus 42 ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~ 94 (251)
T PF11932_consen 42 KRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIE 94 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335556677888877777666666555544 4455666666666655
No 75
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=42.97 E-value=93 Score=24.65 Aligned_cols=45 Identities=24% Similarity=0.394 Sum_probs=26.2
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy2907 31 NFEQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQ 75 (88)
Q Consensus 31 nfEQLMvnMLdERDKLletLretQe~L~~~q~rL~eve~Erd~Lq 75 (88)
.++.=+-.+-.|..+|.+.|.+.+..-......+.+++.+...++
T Consensus 47 ~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 47 ELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566666666666666666665555555555555544
No 76
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=42.67 E-value=92 Score=26.47 Aligned_cols=38 Identities=16% Similarity=0.242 Sum_probs=28.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy2907 41 DEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQI 78 (88)
Q Consensus 41 dERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl 78 (88)
+|+-+||.+|+++++.-.+|..-.+|++..-..-.++-
T Consensus 37 eeh~~Lm~tL~k~kk~KeeAl~l~~e~e~kLee~e~~C 74 (436)
T PF01093_consen 37 EEHKELMKTLEKSKKEKEEALKLANEVEEKLEEEEEVC 74 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999888887777777766555544433
No 77
>KOG4286|consensus
Probab=42.25 E-value=33 Score=31.84 Aligned_cols=33 Identities=33% Similarity=0.325 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy2907 43 KDKLLDNLRETQDRLSETSGKLSMVEKERDSLQ 75 (88)
Q Consensus 43 RDKLletLretQe~L~~~q~rL~eve~Erd~Lq 75 (88)
=|+-|+.|+|.|..+++.+.+|.+.|.+|...+
T Consensus 222 v~~~le~l~elq~a~~el~~~l~~ae~~~~~w~ 254 (966)
T KOG4286|consen 222 IDETLERLQELQEATDELDLKLRQAEVIKGSWQ 254 (966)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHhhhhccc
Confidence 367899999999999999999999999986554
No 78
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=41.30 E-value=1.2e+02 Score=21.10 Aligned_cols=32 Identities=9% Similarity=0.174 Sum_probs=17.7
Q ss_pred HHHhhhhhH-HHHHHHHHHHHHHHHHHhHHHHH
Q psy2907 36 MVTMFDEKD-KLLDNLRETQDRLSETSGKLSMV 67 (88)
Q Consensus 36 MvnMLdERD-KLletLretQe~L~~~q~rL~ev 67 (88)
+.++|++|. ++-+.|.++.+.-..++..+.+.
T Consensus 33 i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~ 65 (164)
T PRK14471 33 ILGAVKEREDSIKNALASAEEARKEMQNLQADN 65 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777775 45555666655555555443333
No 79
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=41.05 E-value=95 Score=20.87 Aligned_cols=39 Identities=28% Similarity=0.457 Sum_probs=31.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHH----------HHHHHHHHHHHHHh
Q psy2907 41 DEKDKLLDNLRETQDRLSETSGKLS----------MVEKERDSLQRQIA 79 (88)
Q Consensus 41 dERDKLletLretQe~L~~~q~rL~----------eve~Erd~LqrQl~ 79 (88)
-|=|++=|.|..+..+|.....||. +.++|..++..++.
T Consensus 5 ~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~ 53 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLE 53 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhh
Confidence 4557888889999999999988876 67778888777665
No 80
>KOG4559|consensus
Probab=40.74 E-value=1.3e+02 Score=21.60 Aligned_cols=46 Identities=26% Similarity=0.410 Sum_probs=28.8
Q ss_pred cccccCCCCC-CCCCCCC--CCCcChHHHHHHHhhh--------------hhHHHHHHHHHHH
Q psy2907 9 MPTISEDVVP-GQRGSLF--SGEDANFEQLMVTMFD--------------EKDKLLDNLRETQ 54 (88)
Q Consensus 9 MPTIsEd~~~-~~~~~~~--~~~~~nfEQLMvnMLd--------------ERDKLletLretQ 54 (88)
||.|+|-++. +..++.+ ...+.|+-||--+|.| |--||||..-.+.
T Consensus 1 l~d~~e~a~TlsSa~~~~a~~~~~PhirqLAdkM~dKt~ef~qHeLe~~iEdYKLLEeMNkaT 63 (120)
T KOG4559|consen 1 LADINEHAPTLSSAPPFEALPAHDPHIRQLADKMFDKTEEFFQHELEAPIEDYKLLEEMNKAT 63 (120)
T ss_pred CCCccccCCcccCCCCCcCCCCCCccHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 4667776542 1222222 1346899999999985 4568888876654
No 81
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=40.61 E-value=97 Score=19.86 Aligned_cols=33 Identities=18% Similarity=0.316 Sum_probs=17.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy2907 36 MVTMFDEKDKLLDNLRETQDRLSETSGKLSMVE 68 (88)
Q Consensus 36 MvnMLdERDKLletLretQe~L~~~q~rL~eve 68 (88)
..++-.||+.|.+...-+..++...-.||+-.|
T Consensus 30 ~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 30 EKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 344445566665555555555555555555443
No 82
>KOG4398|consensus
Probab=40.37 E-value=99 Score=25.78 Aligned_cols=47 Identities=15% Similarity=0.265 Sum_probs=39.9
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy2907 31 NFEQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQ 77 (88)
Q Consensus 31 nfEQLMvnMLdERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQ 77 (88)
.+||++-.==+||.|-.+.|+.+.|-+...-+|++-.+..||.+||.
T Consensus 9 ~~~~~i~k~nee~~~~~~~~~k~~e~~qkl~sr~~~~~ekke~i~r~ 55 (359)
T KOG4398|consen 9 QLKQTICKGNEEMEKNSEGLLKTKEKNQKLYSRAQRHQEKKEKIQRH 55 (359)
T ss_pred HHHHHHhcCcHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555655568999999999999999999999999999999999985
No 83
>KOG2685|consensus
Probab=39.54 E-value=1.1e+02 Score=26.14 Aligned_cols=41 Identities=29% Similarity=0.506 Sum_probs=36.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 39 MFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 39 MLdERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
..+|=.+|-+++.-.++.|++++.-|+.+.+-+..|++-|.
T Consensus 349 L~~EV~~l~~t~~~L~~kL~eA~~~l~~L~~~~~rLe~di~ 389 (421)
T KOG2685|consen 349 LVDEVHELDDTVAALKEKLDEAEDSLKLLVNHRARLERDIA 389 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35888899999999999999999999999999999998665
No 84
>KOG0999|consensus
Probab=38.60 E-value=72 Score=28.93 Aligned_cols=39 Identities=33% Similarity=0.440 Sum_probs=34.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 41 DEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 41 dERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
++|-||-+-|+|++.+=+-.-+...|+|.|..+||.|++
T Consensus 149 ~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs 187 (772)
T KOG0999|consen 149 DQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVS 187 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 678888888999988877777778899999999999987
No 85
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=37.61 E-value=23 Score=29.60 Aligned_cols=16 Identities=25% Similarity=0.681 Sum_probs=13.8
Q ss_pred HhhhhhHHHHHHHHHH
Q psy2907 38 TMFDEKDKLLDNLRET 53 (88)
Q Consensus 38 nMLdERDKLletLret 53 (88)
-+||+||+|++.|-+.
T Consensus 197 dL~DqRD~ll~eLS~~ 212 (547)
T PRK08147 197 DLLDQRDQLVSELNQI 212 (547)
T ss_pred hhHHHHHHHHHHHHhh
Confidence 3899999999999764
No 86
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=37.50 E-value=1.2e+02 Score=27.53 Aligned_cols=45 Identities=24% Similarity=0.353 Sum_probs=39.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy2907 36 MVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIAA 80 (88)
Q Consensus 36 MvnMLdERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~~ 80 (88)
.-.+-.+..+|-..|.++++.|..++.+|+|.+..-..|+.+|..
T Consensus 598 lE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~ 642 (769)
T PF05911_consen 598 LEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELES 642 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456668889999999999999999999999999999999988873
No 87
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=37.15 E-value=43 Score=26.41 Aligned_cols=34 Identities=24% Similarity=0.422 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy2907 45 KLLDNLRETQDRLSETSGKLSMVEKERDSLQRQI 78 (88)
Q Consensus 45 KLletLretQe~L~~~q~rL~eve~Erd~LqrQl 78 (88)
++-..|.+++..|...+.+|++++..-..|+.++
T Consensus 225 ~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~ 258 (344)
T PF12777_consen 225 EAEAELEEAEEQLAEKQAELAELEEKLAALQKEY 258 (344)
T ss_dssp HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333455555555555555555555444444444
No 88
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=37.15 E-value=91 Score=28.10 Aligned_cols=37 Identities=27% Similarity=0.365 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 43 KDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 43 RDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
|.+|-+-++|++.+=.-.=+-..|+|-|+.+||+|++
T Consensus 78 ~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs 114 (717)
T PF09730_consen 78 RKRLREEIKEYKFREARLLQDYSELEEENISLQKQVS 114 (717)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3344444444443333222334599999999999987
No 89
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=35.79 E-value=1.7e+02 Score=21.15 Aligned_cols=33 Identities=6% Similarity=0.116 Sum_probs=17.7
Q ss_pred HHHhhhhhHHH-HHHHHHHHHHHHHHHhHHHHHH
Q psy2907 36 MVTMFDEKDKL-LDNLRETQDRLSETSGKLSMVE 68 (88)
Q Consensus 36 MvnMLdERDKL-letLretQe~L~~~q~rL~eve 68 (88)
+.++|++|.+- -+.|.+..+...+++..+++.+
T Consensus 56 I~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye 89 (181)
T PRK13454 56 IGAVLAERQGTITNDLAAAEELKQKAVEAEKAYN 89 (181)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44666887654 4455555555555544444333
No 90
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=35.78 E-value=1.2e+02 Score=23.55 Aligned_cols=39 Identities=18% Similarity=0.394 Sum_probs=26.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHH---------------HHHHHHHHHHHHHh
Q psy2907 41 DEKDKLLDNLRETQDRLSETSGKLS---------------MVEKERDSLQRQIA 79 (88)
Q Consensus 41 dERDKLletLretQe~L~~~q~rL~---------------eve~Erd~LqrQl~ 79 (88)
..||-|++-..++++++..++..++ ++++..+.|+.++.
T Consensus 21 hKRdilvdrVe~Ardsq~eaqeQF~sALe~f~sl~~~~ggdLe~~Y~~ln~~ye 74 (201)
T PF11172_consen 21 HKRDILVDRVEDARDSQQEAQEQFKSALEQFKSLVNFDGGDLEDKYNALNDEYE 74 (201)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHH
Confidence 4677777777777777777666654 66666676666654
No 91
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=35.70 E-value=1.7e+02 Score=21.21 Aligned_cols=39 Identities=13% Similarity=0.216 Sum_probs=20.4
Q ss_pred HHHhhhhhHHH-HHHHHHHH-------HHHHHHHhHHHHHHHHHHHH
Q psy2907 36 MVTMFDEKDKL-LDNLRETQ-------DRLSETSGKLSMVEKERDSL 74 (88)
Q Consensus 36 MvnMLdERDKL-letLretQ-------e~L~~~q~rL~eve~Erd~L 74 (88)
+.+|||+|.+- -+.|.++. .-+...+.+|++...|.+..
T Consensus 29 I~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~I 75 (154)
T PRK06568 29 ILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQM 75 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889888643 34444332 33344444455555554443
No 92
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=35.14 E-value=1.9e+02 Score=22.37 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=20.3
Q ss_pred ChHHHHHHHhhhhhHHHHHHHHH
Q psy2907 30 ANFEQLMVTMFDEKDKLLDNLRE 52 (88)
Q Consensus 30 ~nfEQLMvnMLdERDKLletLre 52 (88)
..|-+++-+|.|+|++|+++...
T Consensus 70 ~~F~~~L~~ie~~r~~l~d~aq~ 92 (207)
T cd07633 70 KEFAELLQEVEEERMMMVQNASD 92 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999998643
No 93
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=35.11 E-value=1.1e+02 Score=24.83 Aligned_cols=39 Identities=28% Similarity=0.452 Sum_probs=26.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 41 DEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 41 dERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
.|...|++-|.+.+-.+...|-||+.++.|.-.|.--+.
T Consensus 149 ~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~ 187 (290)
T COG4026 149 KEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLK 187 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666667777777777777777777766655444
No 94
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=34.80 E-value=1.5e+02 Score=26.48 Aligned_cols=47 Identities=15% Similarity=0.169 Sum_probs=32.3
Q ss_pred cChHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy2907 29 DANFEQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQ 75 (88)
Q Consensus 29 ~~nfEQLMvnMLdERDKLletLretQe~L~~~q~rL~eve~Erd~Lq 75 (88)
..+|+.|+-.+-++|.++-+..++....+.+++...++++.++..|+
T Consensus 510 ~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~ 556 (771)
T TIGR01069 510 KEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELK 556 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888888888877777777777766666666555555554444
No 95
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=34.76 E-value=1.3e+02 Score=19.39 Aligned_cols=48 Identities=21% Similarity=0.349 Sum_probs=35.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHhh
Q psy2907 33 EQLMVTMFDEKDKLLDNLRETQDR----LSETSGKLSMVEKERDSLQRQIAA 80 (88)
Q Consensus 33 EQLMvnMLdERDKLletLretQe~----L~~~q~rL~eve~Erd~LqrQl~~ 80 (88)
-|-|-..|.|+.+|=|+|+.+-.. ......--.++-.+|+.+.++|..
T Consensus 5 ~~~l~~LL~EN~~LKealrQ~N~~Mker~e~l~~wqe~~~~e~~~~~~kf~E 56 (68)
T PF11577_consen 5 QQQLQELLQENQDLKEALRQNNQAMKERFEELLAWQEKQKEEREFLERKFQE 56 (68)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999977544 344444455788899999988864
No 96
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=34.73 E-value=27 Score=28.90 Aligned_cols=15 Identities=33% Similarity=0.694 Sum_probs=13.3
Q ss_pred hhhhhHHHHHHHHHH
Q psy2907 39 MFDEKDKLLDNLRET 53 (88)
Q Consensus 39 MLdERDKLletLret 53 (88)
++|+||+|++.|-+.
T Consensus 190 L~DqRD~ll~~LS~~ 204 (483)
T PRK07521 190 ALDQRDKLLKQISQI 204 (483)
T ss_pred hHHHHHHHHHHHHhh
Confidence 789999999999764
No 97
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=34.55 E-value=1.2e+02 Score=24.50 Aligned_cols=38 Identities=24% Similarity=0.405 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy2907 43 KDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIAA 80 (88)
Q Consensus 43 RDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~~ 80 (88)
-+.+.+.+.+.+.++..++.++.+++...+.|+.++..
T Consensus 199 ~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~ 236 (498)
T TIGR03007 199 EGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGG 236 (498)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34456667777777777777778888888888887764
No 98
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=34.37 E-value=2e+02 Score=25.98 Aligned_cols=49 Identities=31% Similarity=0.475 Sum_probs=37.4
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 31 NFEQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 31 nfEQLMvnMLdERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
.++|=...+=.|..-|+-+|+++|.+|..+++.|.+-...-..|..+++
T Consensus 269 KL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~ 317 (717)
T PF09730_consen 269 KLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLD 317 (717)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566664555559999999999999999999877666666666666
No 99
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=33.47 E-value=1.6e+02 Score=22.86 Aligned_cols=42 Identities=17% Similarity=0.150 Sum_probs=27.7
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Q psy2907 37 VTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIAAS 81 (88)
Q Consensus 37 vnMLdERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~~~ 81 (88)
.++.+|.++|-+.+.+.+.++.. ..+++++|.+.|+.-|+..
T Consensus 69 ~~l~~EN~~Lr~e~~~l~~~~~~---~~~~l~~EN~rLr~LL~~~ 110 (283)
T TIGR00219 69 NNLEYENYKLRQELLKKNQQLEI---LTQNLKQENVRLRELLNSP 110 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCc
Confidence 34557777777666555443332 3456899999999988753
No 100
>PRK06799 flgK flagellar hook-associated protein FlgK; Validated
Probab=32.98 E-value=30 Score=28.38 Aligned_cols=16 Identities=25% Similarity=0.684 Sum_probs=13.6
Q ss_pred HhhhhhHHHHHHHHHH
Q psy2907 38 TMFDEKDKLLDNLRET 53 (88)
Q Consensus 38 nMLdERDKLletLret 53 (88)
.+||+||+|++.|-+.
T Consensus 197 dL~DqRD~ll~eLS~~ 212 (431)
T PRK06799 197 QLLDERDRILTEMSKY 212 (431)
T ss_pred hhHHHHHHHHHHHHhh
Confidence 3889999999999764
No 101
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=32.96 E-value=1.6e+02 Score=21.79 Aligned_cols=42 Identities=21% Similarity=0.354 Sum_probs=35.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy2907 36 MVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQ 77 (88)
Q Consensus 36 MvnMLdERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQ 77 (88)
=.+.|++.++.-....+.+..+..+=..++++.++-+.++..
T Consensus 26 al~~L~~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~ 67 (240)
T PF12795_consen 26 ALSFLDEIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQ 67 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcc
Confidence 567788999999999999999988888888888888888766
No 102
>TIGR01636 phage_rinA phage transcriptional activator, RinA family. This model represents a family of phage proteins, including RinA, a transcriptional activator in staphylococcal phage phi 11. This family shows similarity to ArpU, a phage-related putative autolysin regulator, and to some sporulation-specific sigma factors.
Probab=32.68 E-value=1.6e+02 Score=20.11 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=18.3
Q ss_pred cChHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHH
Q psy2907 29 DANFEQLMVTMFDEKDKLLDNLRETQDRLSETSGKLS 65 (88)
Q Consensus 29 ~~nfEQLMvnMLdERDKLletLretQe~L~~~q~rL~ 65 (88)
...+|++++.....+. +..|..-.+.+..+=..|.
T Consensus 50 ~~~tE~~~ik~~~D~~--l~~le~~~~~I~~~l~~Ld 84 (134)
T TIGR01636 50 SVVTERMVITIAMDRR--LWNLERNRDAIENCLNEAD 84 (134)
T ss_pred CcHHHHHHHHHHhhHH--HHHHHHHHHHHHHHHHhCC
Confidence 4577999888765433 3333333444444444443
No 103
>KOG3650|consensus
Probab=32.53 E-value=1.2e+02 Score=21.68 Aligned_cols=36 Identities=28% Similarity=0.444 Sum_probs=31.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy2907 41 DEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQR 76 (88)
Q Consensus 41 dERDKLletLretQe~L~~~q~rL~eve~Erd~Lqr 76 (88)
+|.-||.-+.-|.|.+|+...+|..-|..|.=.|+.
T Consensus 56 EEKaRlItQVLELQnTLdDLSqRVdsVKEEnLKLrS 91 (120)
T KOG3650|consen 56 EEKARLITQVLELQNTLDDLSQRVDSVKEENLKLRS 91 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 789999999999999999999999888777665553
No 104
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=32.15 E-value=95 Score=25.55 Aligned_cols=21 Identities=29% Similarity=0.268 Sum_probs=12.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHh
Q psy2907 59 ETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 59 ~~q~rL~eve~Erd~LqrQl~ 79 (88)
+||.-|||.-||...|+--++
T Consensus 114 EAQLALKEARkEIkQLkQvie 134 (305)
T PF15290_consen 114 EAQLALKEARKEIKQLKQVIE 134 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666655443
No 105
>KOG1510|consensus
Probab=31.93 E-value=1.3e+02 Score=22.27 Aligned_cols=50 Identities=16% Similarity=0.246 Sum_probs=31.4
Q ss_pred HHHHHHHhhhhhHHHHHH--------------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Q psy2907 32 FEQLMVTMFDEKDKLLDN--------------LRETQDRLSETSGKLSMVEKERDSLQRQIAAS 81 (88)
Q Consensus 32 fEQLMvnMLdERDKLlet--------------LretQe~L~~~q~rL~eve~Erd~LqrQl~~~ 81 (88)
|-..++.---.=|+|.++ +-+.|+...+.+.-|.++..+.+.|.+|+...
T Consensus 61 laa~i~~~akqId~LIdsLP~~~~~~e~Ql~~i~kLq~en~e~~~el~~~v~~~e~Ll~~vq~~ 124 (139)
T KOG1510|consen 61 LAADIAKKAKQIDTLIDSLPGEEGSAEAQLEKIKKLQEENEEVALELEELVSKGEKLLEQVQSL 124 (139)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455444445555544 44566666677777777777778888877654
No 106
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=31.89 E-value=31 Score=29.70 Aligned_cols=15 Identities=33% Similarity=0.793 Sum_probs=12.9
Q ss_pred hhhhhHHHHHHHHHH
Q psy2907 39 MFDEKDKLLDNLRET 53 (88)
Q Consensus 39 MLdERDKLletLret 53 (88)
.||.||+|++.|.+.
T Consensus 199 LlDqRD~Lv~eLs~~ 213 (552)
T COG1256 199 LLDQRDQLVDELSQL 213 (552)
T ss_pred HHHHHHHHHHHHHhh
Confidence 589999999999763
No 107
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=31.35 E-value=2.7e+02 Score=22.42 Aligned_cols=44 Identities=23% Similarity=0.422 Sum_probs=33.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 36 MVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 36 MvnMLdERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
|-.+++|=++.-..+.|+++++..+..||.+++-++-.+..-+.
T Consensus 209 Le~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~ 252 (269)
T PF05278_consen 209 LEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIK 252 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666777777888888888888888888888888776443
No 108
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=31.06 E-value=1.5e+02 Score=22.77 Aligned_cols=34 Identities=24% Similarity=0.471 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy2907 44 DKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQ 77 (88)
Q Consensus 44 DKLletLretQe~L~~~q~rL~eve~Erd~LqrQ 77 (88)
.+|-.+|...+.+....+.+|..+.+|+..+..+
T Consensus 211 ~rL~~~l~~le~~~~~~~~~l~~l~~E~~~I~~r 244 (254)
T PF15458_consen 211 ERLRESLSSLEDSKSQLQQQLESLEKEKEEIEER 244 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999988877653
No 109
>COG5241 RAD10 Nucleotide excision repair endonuclease NEF1, RAD10 subunit [DNA replication, recombination, and repair]
Probab=31.05 E-value=34 Score=26.84 Aligned_cols=19 Identities=11% Similarity=0.338 Sum_probs=16.4
Q ss_pred CCcChHHHHHHHhhhhhHH
Q psy2907 27 GEDANFEQLMVTMFDEKDK 45 (88)
Q Consensus 27 ~~~~nfEQLMvnMLdERDK 45 (88)
-++..|||+.++.+++|.|
T Consensus 4 ~d~~~fe~i~~~~~~~~~~ 22 (224)
T COG5241 4 TDPTSFESILAGVAKLRKE 22 (224)
T ss_pred CchHHHHHHHHHHHHHHHh
Confidence 3568999999999999976
No 110
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=31.03 E-value=35 Score=29.44 Aligned_cols=15 Identities=27% Similarity=0.547 Sum_probs=13.2
Q ss_pred hhhhhHHHHHHHHHH
Q psy2907 39 MFDEKDKLLDNLRET 53 (88)
Q Consensus 39 MLdERDKLletLret 53 (88)
+||+||+|++.|-+.
T Consensus 193 LlDqRD~ll~eLS~~ 207 (624)
T PRK12714 193 LLDQRDALVSKLVGY 207 (624)
T ss_pred hHHHHHHHHHHHHhh
Confidence 799999999999753
No 111
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=30.83 E-value=34 Score=28.06 Aligned_cols=15 Identities=20% Similarity=0.461 Sum_probs=13.3
Q ss_pred hhhhhHHHHHHHHHH
Q psy2907 39 MFDEKDKLLDNLRET 53 (88)
Q Consensus 39 MLdERDKLletLret 53 (88)
+||+||+|++.|-+.
T Consensus 195 L~DqRD~ll~eLS~~ 209 (456)
T PRK07191 195 LLDQRDLQIKKLSGL 209 (456)
T ss_pred hHHHHHHHHHHHHhh
Confidence 789999999999764
No 112
>KOG1760|consensus
Probab=30.79 E-value=1.7e+02 Score=21.38 Aligned_cols=36 Identities=28% Similarity=0.468 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHH
Q psy2907 43 KDKLLDNLRETQDRLSE----TSGKLSMVEKERDSLQRQI 78 (88)
Q Consensus 43 RDKLletLretQe~L~~----~q~rL~eve~Erd~LqrQl 78 (88)
++++.+.|.++.++|.. ..+++..+..+-+.|+.+|
T Consensus 79 ~~~~~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~~L 118 (131)
T KOG1760|consen 79 LDKLQDQLEEKKETLEKEIEELESELESISARMDELKKVL 118 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999998887643 3333444444444444444
No 113
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=30.48 E-value=1.6e+02 Score=25.40 Aligned_cols=26 Identities=12% Similarity=0.318 Sum_probs=22.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy2907 55 DRLSETSGKLSMVEKERDSLQRQIAA 80 (88)
Q Consensus 55 e~L~~~q~rL~eve~Erd~LqrQl~~ 80 (88)
..+...+.||++.+.|...|+.|+..
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 56777888999999999999999863
No 114
>KOG3000|consensus
Probab=30.43 E-value=92 Score=25.20 Aligned_cols=36 Identities=33% Similarity=0.462 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 44 DKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 44 DKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
+|+.+.+.+.-..|.....++...++|||++-+-|.
T Consensus 194 ~~~~qe~~~l~~~l~~~~~~~~~le~ERdfyf~kLr 229 (295)
T KOG3000|consen 194 DKLKQELEELTQQLTELKTTIASLEKERDFYFSKLR 229 (295)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence 344888999999999999999999999999987553
No 115
>PF14661 HAUS6_N: HAUS augmin-like complex subunit 6 N-terminus
Probab=30.21 E-value=2.2e+02 Score=21.51 Aligned_cols=40 Identities=25% Similarity=0.317 Sum_probs=24.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy2907 36 MVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQI 78 (88)
Q Consensus 36 MvnMLdERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl 78 (88)
+++++++++.+...+++....| ..+..++.+++..++.++
T Consensus 169 ~~~~~~~~~~~~~~~~~~aq~L---~~k~r~l~~~~~~~~~~~ 208 (247)
T PF14661_consen 169 FLQILQEKDAARQKYQEFAQLL---RKKYRELSAECAELQAQL 208 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
Confidence 4555566665555555444333 335667778888887777
No 116
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=30.01 E-value=1.9e+02 Score=20.92 Aligned_cols=6 Identities=33% Similarity=0.506 Sum_probs=2.2
Q ss_pred HHHHHH
Q psy2907 66 MVEKER 71 (88)
Q Consensus 66 eve~Er 71 (88)
.++.|+
T Consensus 169 ~l~~En 174 (194)
T PF08614_consen 169 KLEEEN 174 (194)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 117
>PF14703 DUF4463: Domain of unknown function (DUF4463)
Probab=29.80 E-value=1.1e+02 Score=18.60 Aligned_cols=26 Identities=12% Similarity=0.364 Sum_probs=20.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHh
Q psy2907 37 VTMFDEKDKLLDNLRETQDRLSETSG 62 (88)
Q Consensus 37 vnMLdERDKLletLretQe~L~~~q~ 62 (88)
-.++++|++++..|..+...+.-...
T Consensus 9 ~~Lv~~R~~~~~kLE~a~~~~~~~~~ 34 (85)
T PF14703_consen 9 EKLVEEREKAVRKLESAESKYLKNAN 34 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 35678999999999888877765544
No 118
>PF15294 Leu_zip: Leucine zipper
Probab=29.80 E-value=1.9e+02 Score=23.30 Aligned_cols=39 Identities=21% Similarity=0.335 Sum_probs=33.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 41 DEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 41 dERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
.|+++|.+-....+++|...+.+--.+-.|+..|+++|+
T Consensus 132 kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~ 170 (278)
T PF15294_consen 132 KEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLK 170 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888888888888888888999999998886
No 119
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=29.65 E-value=1.4e+02 Score=18.27 Aligned_cols=35 Identities=29% Similarity=0.453 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 45 KLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 45 KLletLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
+.--.|-+.+..+...+.+|..+...++.+..++.
T Consensus 2 ~a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~ 36 (123)
T PF02050_consen 2 QAEQELAEAQQELQEAEEQLEQLQQERQEYQEQLS 36 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555556666666666666666666655544
No 120
>PRK11281 hypothetical protein; Provisional
Probab=29.40 E-value=1.3e+02 Score=28.33 Aligned_cols=44 Identities=16% Similarity=0.342 Sum_probs=37.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 36 MVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 36 MvnMLdERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
-.+.|++.++..+.+.+.+.++..+..+++++.++-+.++....
T Consensus 68 tL~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~ 111 (1113)
T PRK11281 68 TLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDND 111 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcccc
Confidence 56788999999999999999999999999999988888876443
No 121
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=29.11 E-value=1.3e+02 Score=26.17 Aligned_cols=30 Identities=27% Similarity=0.385 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 50 LRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 50 LretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
|+|+-+....++-|...++.|.+.+.+|++
T Consensus 436 l~eaeea~~~a~~r~~~~eqe~ek~~kqie 465 (488)
T PF06548_consen 436 LREAEEAASVAQERAMDAEQENEKAKKQIE 465 (488)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556667777788888888888876
No 122
>PRK10404 hypothetical protein; Provisional
Probab=28.88 E-value=1.5e+02 Score=20.08 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=20.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHH
Q psy2907 41 DEKDKLLDNLRETQDRLSETSGKLSM 66 (88)
Q Consensus 41 dERDKLletLretQe~L~~~q~rL~e 66 (88)
+-|+|+-..|.+++++|..++....+
T Consensus 38 ~lR~r~~~~L~~ar~~l~~~~~~~~~ 63 (101)
T PRK10404 38 ELKARAEKALDDVKKRVSQASDSYYY 63 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 56899999999999988887775443
No 123
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=28.76 E-value=2.1e+02 Score=20.15 Aligned_cols=40 Identities=18% Similarity=0.328 Sum_probs=25.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 40 FDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 40 LdERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
--+||-|=.+++..+.+......|+.+++.+-+.+.++++
T Consensus 36 ~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le 75 (107)
T PF09304_consen 36 AKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLE 75 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567766666666666666666666666666666665554
No 124
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=28.73 E-value=41 Score=28.07 Aligned_cols=15 Identities=40% Similarity=0.835 Sum_probs=13.3
Q ss_pred hhhhhHHHHHHHHHH
Q psy2907 39 MFDEKDKLLDNLRET 53 (88)
Q Consensus 39 MLdERDKLletLret 53 (88)
+||+||+|++.|-+.
T Consensus 207 LlDqRD~ll~~LS~~ 221 (507)
T PRK07739 207 LYDQRDLLLDELSKI 221 (507)
T ss_pred hHHHHHHHHHHHHhh
Confidence 789999999999764
No 125
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.41 E-value=1.2e+02 Score=21.40 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=28.3
Q ss_pred cChHHHHHHHhh--------hhhHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy2907 29 DANFEQLMVTMF--------DEKDKLLDNLRETQDRLSETSGKLSMVEK 69 (88)
Q Consensus 29 ~~nfEQLMvnML--------dERDKLletLretQe~L~~~q~rL~eve~ 69 (88)
..+|.+.|-+-| +|=|-..+-|--|.+.|+...+|+.++|-
T Consensus 39 E~~~r~~~q~~lnkLDlVsREEFdvq~qvl~rtR~kl~~Leari~~LEa 87 (103)
T COG2960 39 EKAFRAQLQRQLNKLDLVSREEFDVQRQVLLRTREKLAALEARIEELEA 87 (103)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888887777 56666666666677777766666666654
No 126
>PRK10722 hypothetical protein; Provisional
Probab=28.40 E-value=1.2e+02 Score=24.27 Aligned_cols=29 Identities=31% Similarity=0.342 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhH---HHHHHH
Q psy2907 41 DEKDKLLDNLRETQDRLSETSGK---LSMVEK 69 (88)
Q Consensus 41 dERDKLletLretQe~L~~~q~r---L~eve~ 69 (88)
++.|+|-++.++.|.+|..+.-| |.++|+
T Consensus 176 ~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdIER 207 (247)
T PRK10722 176 SELDALRQQQQRLQYQLELTTRKLENLTDIER 207 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 127
>PRK10884 SH3 domain-containing protein; Provisional
Probab=28.12 E-value=2e+02 Score=21.69 Aligned_cols=20 Identities=20% Similarity=0.177 Sum_probs=7.7
Q ss_pred HHHHHHhHHHHHHHHHHHHH
Q psy2907 56 RLSETSGKLSMVEKERDSLQ 75 (88)
Q Consensus 56 ~L~~~q~rL~eve~Erd~Lq 75 (88)
+|+.++.++..++.+.|.++
T Consensus 147 ~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 147 QLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 128
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=28.09 E-value=2.9e+02 Score=22.34 Aligned_cols=48 Identities=21% Similarity=0.403 Sum_probs=25.6
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHH
Q psy2907 31 NFEQLMVTMFDEKDKLLDNLRETQDRLSE---TSGKLSMVEKERDSLQRQI 78 (88)
Q Consensus 31 nfEQLMvnMLdERDKLletLretQe~L~~---~q~rL~eve~Erd~LqrQl 78 (88)
|+.+..-+.-++.++|...+.+..+.|+. ...|+++.++..+++.+.+
T Consensus 239 ~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~ 289 (406)
T PF02388_consen 239 NGKEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRI 289 (406)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHH
Confidence 44444555555666666555555555443 2334555555555555544
No 129
>PF12592 DUF3763: Protein of unknown function (DUF3763); InterPro: IPR022547 This domain is found in bacterial regulartory ATPases 3.6.3. from EC, and is approximately 60 amino acids in length. The domain is found C-terminal to PF07728 from PFAM. There is a single completely conserved residue F that may be functionally important. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances; PDB: 3NBX_X.
Probab=27.84 E-value=1.3e+02 Score=18.66 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=14.7
Q ss_pred HHhHHHHHHHHHHHHHHHHhhcCCCCC
Q psy2907 60 TSGKLSMVEKERDSLQRQIAASLPQVG 86 (88)
Q Consensus 60 ~q~rL~eve~Erd~LqrQl~~~lPqef 86 (88)
...+|.+++++--.-+++|+.++|=-|
T Consensus 5 ~~~qL~~~~~~l~~qR~~F~~~qPhlF 31 (57)
T PF12592_consen 5 ALAQLDEAEHELRQQRSLFHQHQPHLF 31 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT---TT
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcC
Confidence 344555666666666667887777544
No 130
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=27.82 E-value=1.7e+02 Score=25.45 Aligned_cols=34 Identities=15% Similarity=0.333 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 46 LLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 46 LletLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
+.++.++.+.+++..+.++.+....+.+|+.++.
T Consensus 376 ~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~ 409 (656)
T PRK06975 376 AQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQ 409 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777888888888888888888888887764
No 131
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=27.61 E-value=2.4e+02 Score=20.37 Aligned_cols=49 Identities=16% Similarity=0.293 Sum_probs=31.5
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 31 NFEQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 31 nfEQLMvnMLdERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
.++...-..-..-+.+-.+....+.+|.....|+.++..+++.|..+.+
T Consensus 95 ~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~ 143 (221)
T PF04012_consen 95 DLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKAREN 143 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555566666666666777777778888888877776544
No 132
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=27.59 E-value=74 Score=21.13 Aligned_cols=12 Identities=33% Similarity=0.562 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q psy2907 64 LSMVEKERDSLQ 75 (88)
Q Consensus 64 L~eve~Erd~Lq 75 (88)
++++|+|||.|-
T Consensus 9 mkeLEqEkd~LL 20 (84)
T PF11414_consen 9 MKELEQEKDVLL 20 (84)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 133
>COG1422 Predicted membrane protein [Function unknown]
Probab=27.04 E-value=76 Score=24.55 Aligned_cols=19 Identities=21% Similarity=0.323 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy2907 44 DKLLDNLRETQDRLSETSG 62 (88)
Q Consensus 44 DKLletLretQe~L~~~q~ 62 (88)
.|+.+.++|.|+...+++.
T Consensus 75 ~~~qk~m~efq~e~~eA~~ 93 (201)
T COG1422 75 KELQKMMKEFQKEFREAQE 93 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666655
No 134
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=27.00 E-value=1.7e+02 Score=18.40 Aligned_cols=29 Identities=17% Similarity=0.294 Sum_probs=20.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy2907 41 DEKDKLLDNLRETQDRLSETSGKLSMVEK 69 (88)
Q Consensus 41 dERDKLletLretQe~L~~~q~rL~eve~ 69 (88)
+.|++|-+...++.+-...+...++.+..
T Consensus 30 ~lR~~i~~~~~~~~~l~k~~~~~l~~l~~ 58 (102)
T PF14523_consen 30 ELREKIHQLIQKTNQLIKEISELLKKLNS 58 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888877777777777777776665544
No 135
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=26.86 E-value=1.4e+02 Score=21.73 Aligned_cols=31 Identities=23% Similarity=0.449 Sum_probs=25.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhcCCC
Q psy2907 54 QDRLSETSGKLSMVEKERDSLQRQIAASLPQ 84 (88)
Q Consensus 54 Qe~L~~~q~rL~eve~Erd~LqrQl~~~lPq 84 (88)
+..|..++.+|.++..+=+.++.+|-..||+
T Consensus 148 ~~kl~kae~~l~~a~~~y~~lN~~Lk~eLP~ 178 (216)
T cd07599 148 EKQLAKLERKLEEAKEEYEALNELLKSELPK 178 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3457777888888888999999999988886
No 136
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=26.69 E-value=45 Score=29.34 Aligned_cols=15 Identities=27% Similarity=0.572 Sum_probs=13.3
Q ss_pred hhhhhHHHHHHHHHH
Q psy2907 39 MFDEKDKLLDNLRET 53 (88)
Q Consensus 39 MLdERDKLletLret 53 (88)
+||+||+|++.|-+.
T Consensus 195 LlDqRD~Ll~eLS~~ 209 (676)
T PRK05683 195 LLDARDEAVRQLNEL 209 (676)
T ss_pred hHHHHHHHHHHHHhh
Confidence 899999999999764
No 137
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated
Probab=26.47 E-value=46 Score=29.02 Aligned_cols=15 Identities=27% Similarity=0.689 Sum_probs=13.3
Q ss_pred hhhhhHHHHHHHHHH
Q psy2907 39 MFDEKDKLLDNLRET 53 (88)
Q Consensus 39 MLdERDKLletLret 53 (88)
+||+||+|++.|-+.
T Consensus 197 LlDqRD~ll~eLS~~ 211 (651)
T PRK06945 197 LLDQRDQLVSELSKL 211 (651)
T ss_pred hHHHHHHHHHHHHhh
Confidence 899999999999764
No 138
>PRK12715 flgK flagellar hook-associated protein FlgK; Provisional
Probab=26.30 E-value=45 Score=29.16 Aligned_cols=16 Identities=31% Similarity=0.598 Sum_probs=13.8
Q ss_pred HhhhhhHHHHHHHHHH
Q psy2907 38 TMFDEKDKLLDNLRET 53 (88)
Q Consensus 38 nMLdERDKLletLret 53 (88)
.+||+||+|++.|-+.
T Consensus 190 dLlDqRD~ll~eLS~~ 205 (649)
T PRK12715 190 ELLDHRDELLKQLSGY 205 (649)
T ss_pred HhHHHHHHHHHHHHhh
Confidence 4899999999999764
No 139
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=26.13 E-value=1.8e+02 Score=18.33 Aligned_cols=20 Identities=10% Similarity=0.243 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHhHHHHHH
Q psy2907 49 NLRETQDRLSETSGKLSMVE 68 (88)
Q Consensus 49 tLretQe~L~~~q~rL~eve 68 (88)
++.+...++...+..+..+.
T Consensus 27 ~l~~~~~ti~~l~~~~~~i~ 46 (90)
T PF06103_consen 27 TLDEVNKTIDTLQEQVDPIT 46 (90)
T ss_pred HHHHHHHHHHHHHHhHHHHH
Confidence 33333333333333333333
No 140
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=25.97 E-value=1.5e+02 Score=21.87 Aligned_cols=25 Identities=32% Similarity=0.593 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHH
Q psy2907 41 DEKDKLLDNLRETQDRLSETSGKLS 65 (88)
Q Consensus 41 dERDKLletLretQe~L~~~q~rL~ 65 (88)
+||.++++.|.+.+..+...+..|+
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555554444
No 141
>PRK08871 flgK flagellar hook-associated protein FlgK; Validated
Probab=25.91 E-value=49 Score=28.80 Aligned_cols=16 Identities=25% Similarity=0.586 Sum_probs=13.7
Q ss_pred HhhhhhHHHHHHHHHH
Q psy2907 38 TMFDEKDKLLDNLRET 53 (88)
Q Consensus 38 nMLdERDKLletLret 53 (88)
.+||+||+|++.|-+.
T Consensus 194 dLlDqRD~ll~eLS~~ 209 (626)
T PRK08871 194 DLMDQHEKLVKELSQY 209 (626)
T ss_pred hhHHHHHHHHHHHHhh
Confidence 3899999999999764
No 142
>KOG3119|consensus
Probab=25.57 E-value=2e+02 Score=22.33 Aligned_cols=27 Identities=22% Similarity=0.449 Sum_probs=21.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 53 TQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 53 tQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
.+....+++.|..++++|++.|++++.
T Consensus 213 ~k~~~~e~~~r~~~leken~~lr~~v~ 239 (269)
T KOG3119|consen 213 RKQKEDEMAHRVAELEKENEALRTQVE 239 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444557888899999999999998665
No 143
>PF07130 YebG: YebG protein; InterPro: IPR009813 This family consists of several bacterial YebG proteins of around 75 residues in length. The exact function of this protein is unknown but it is thought to be involved in the SOS response. The induction of the yebG gene occurs as cell enter into the stationary growth phase and is dependent on is dependent on cyclic AMP and H-NS [].; PDB: 3ERM_E.
Probab=25.49 E-value=1.9e+02 Score=19.20 Aligned_cols=31 Identities=29% Similarity=0.296 Sum_probs=21.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy2907 41 DEKDKLLDNLRETQDRLSETSGKLSMVEKER 71 (88)
Q Consensus 41 dERDKLletLretQe~L~~~q~rL~eve~Er 71 (88)
|..||.||.......=|..+..-+.|-..|.
T Consensus 26 DAyDKmLd~Ad~L~~~L~~~~~~lde~~~E~ 56 (75)
T PF07130_consen 26 DAYDKMLDLADNLTDFLEQSVLGLDEAQAEE 56 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTT--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 7888888888888777777776666655553
No 144
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=25.37 E-value=47 Score=28.66 Aligned_cols=15 Identities=33% Similarity=0.649 Sum_probs=13.2
Q ss_pred hhhhhHHHHHHHHHH
Q psy2907 39 MFDEKDKLLDNLRET 53 (88)
Q Consensus 39 MLdERDKLletLret 53 (88)
+||+||+|++.|-+.
T Consensus 207 LlDqRD~ll~eLS~~ 221 (627)
T PRK06665 207 LLDRRDLLVDKLSSL 221 (627)
T ss_pred hHHHHHHHHHHHHhh
Confidence 789999999999764
No 145
>TIGR02791 VirB5 P-type DNA transfer protein VirB5. The VirB5 protein is involved in the type IV DNA secretion systems typified by the Agrobacterium Ti plasmid vir system where it interacts with several other proteins essential for proper pilus formation. VirB5 is homologous to the IncN (N-type) conjugation system protein TraC as well as the P-type protein TrbJ and the F-type protein TraE.
Probab=25.32 E-value=1.6e+02 Score=21.83 Aligned_cols=61 Identities=8% Similarity=0.139 Sum_probs=37.5
Q ss_pred CCCCcChHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-----HHhhcCCCCC
Q psy2907 25 FSGEDANFEQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQR-----QIAASLPQVG 86 (88)
Q Consensus 25 ~~~~~~nfEQLMvnMLdERDKLletLretQe~L~~~q~rL~eve~Erd~Lqr-----Ql~~~lPqef 86 (88)
|--+.+++-|-+.+.+++=.++.+++...++++...+.-+.-+..-|+ +.- .+...||.+|
T Consensus 25 pV~D~a~~aq~i~q~~~q~~q~~~q~~ql~~Q~~q~k~~y~sltG~r~-~g~ll~~~~l~~~lp~d~ 90 (220)
T TIGR02791 25 PVTDPASIANALAQAIEQMAALKTQYEQLSEQIEQYKQQYGSLTGNRG-MGDLLNDPALRRYLPFDW 90 (220)
T ss_pred ceeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-HHHHhCCHHhhhhCcHHH
Confidence 334668888877777777777777777777777666655554444333 121 2334577765
No 146
>KOG2629|consensus
Probab=25.14 E-value=3.7e+02 Score=22.15 Aligned_cols=50 Identities=16% Similarity=0.219 Sum_probs=38.4
Q ss_pred ChHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 30 ANFEQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 30 ~nfEQLMvnMLdERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
..+++||-....=|+++..+.+|.=++|+.....|--..+.++.+.++++
T Consensus 136 ~~~~~l~~~va~v~q~~~~qq~Els~~L~~l~~~~~~~s~~~~k~esei~ 185 (300)
T KOG2629|consen 136 KSLNALMDEVAQVSQLLATQQSELSRALASLKNTLVQLSRNIEKLESEIN 185 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 46778888888889999999998888888877776655566666666655
No 147
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=25.09 E-value=2.5e+02 Score=19.66 Aligned_cols=22 Identities=32% Similarity=0.515 Sum_probs=8.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH
Q psy2907 54 QDRLSETSGKLSMVEKERDSLQ 75 (88)
Q Consensus 54 Qe~L~~~q~rL~eve~Erd~Lq 75 (88)
.-.+...+.++..++++||.+.
T Consensus 29 E~E~~~l~~el~~l~~~r~~l~ 50 (120)
T PF12325_consen 29 EGELASLQEELARLEAERDELR 50 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444333
No 148
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=24.99 E-value=2.6e+02 Score=23.49 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=25.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 40 FDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 40 LdERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
+.+-.++...+++++..|...+.+-++.+++.+.++.|++
T Consensus 160 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ 199 (563)
T TIGR00634 160 VKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLE 199 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3444445556666666666666666677777777777765
No 149
>PF09748 Med10: Transcription factor subunit Med10 of Mediator complex; InterPro: IPR019145 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med10 is one of the protein subunits of the Mediator complex, tethered to Med14 (Rgr1) protein. Med10 specifically mediates basal-level HIS4 transcription via Gcn4. In addition, there is a putative requirement for Med10 in Bas2-mediated transcription []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=24.63 E-value=2.3e+02 Score=19.64 Aligned_cols=37 Identities=19% Similarity=0.334 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcCCCC
Q psy2907 49 NLRETQDRLSETSGKLSMVEKERDSLQRQIAASLPQV 85 (88)
Q Consensus 49 tLretQe~L~~~q~rL~eve~Erd~LqrQl~~~lPqe 85 (88)
.+..++..-..+.+|..-..+=|+.|.+.+..+.|.+
T Consensus 85 ~vE~~~~~Nq~~kGK~~a~~~fr~~L~~el~~~fPe~ 121 (128)
T PF09748_consen 85 FVELVRRENQYVKGKMEAFKSFRDVLAEELASAFPEL 121 (128)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHChHH
Confidence 3444555556778889999999999999999999964
No 150
>PLN03188 kinesin-12 family protein; Provisional
Probab=24.36 E-value=1.6e+02 Score=28.63 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 49 NLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 49 tLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
-|+|+.+.+..+|.|..+++.|.+.+.+|++
T Consensus 1205 rl~eaeea~~~a~~r~~~~eqe~~~~~k~~~ 1235 (1320)
T PLN03188 1205 RLKEAEEALTVAQKRAMDAEQEAAEAYKQID 1235 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666777777788888888777665
No 151
>TIGR03741 PRTRC_E PRTRC system protein E. A novel genetic system characterized by six or seven major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family averages about 150 amino acids in length, but the last third contains low-complexity sequence that complicates sequence comparisons. This model does not include the low-complexity region.
Probab=24.11 E-value=1.8e+02 Score=20.01 Aligned_cols=36 Identities=17% Similarity=0.246 Sum_probs=31.6
Q ss_pred cChHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHH
Q psy2907 29 DANFEQLMVTMFDEKDKLLDNLRETQDRLSETSGKL 64 (88)
Q Consensus 29 ~~nfEQLMvnMLdERDKLletLretQe~L~~~q~rL 64 (88)
|.-|=+-+-.-..-|.-|++++..++..|..++.+.
T Consensus 57 D~gF~~ai~~~~~~~~sL~~q~ea~~~~le~a~~~~ 92 (104)
T TIGR03741 57 DAGFAGALGQYVEARQSLAEQAAATRAVLEAAKAAE 92 (104)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999999999665553
No 152
>PRK10869 recombination and repair protein; Provisional
Probab=24.07 E-value=2.9e+02 Score=23.48 Aligned_cols=40 Identities=13% Similarity=0.119 Sum_probs=28.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 40 FDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 40 LdERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
+.+-.+++..+++++..|...+.+-++..+++|.|+-|++
T Consensus 156 ~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~ 195 (553)
T PRK10869 156 LQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLK 195 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3445556666666777777777777777788888888876
No 153
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=23.89 E-value=2.7e+02 Score=19.66 Aligned_cols=31 Identities=32% Similarity=0.543 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy2907 48 DNLRETQDRLSETSGKLSMVEKERDSLQRQI 78 (88)
Q Consensus 48 etLretQe~L~~~q~rL~eve~Erd~LqrQl 78 (88)
..|.+.++.+......+..+..+|+.+..+.
T Consensus 98 ~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~ 128 (177)
T PF13870_consen 98 QELKDREEELAKLREELYRVKKERDKLRKQN 128 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444445555555555433
No 154
>KOG2483|consensus
Probab=23.76 E-value=2.3e+02 Score=22.07 Aligned_cols=34 Identities=9% Similarity=0.298 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 46 LLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 46 LletLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
-.+.....+......+..+.++.++...|+++|.
T Consensus 103 A~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ 136 (232)
T KOG2483|consen 103 ALEHIQSLERKSATQQQDIEDLSRENRKLKARLE 136 (232)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555666678889999999999886
No 155
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=23.75 E-value=3.9e+02 Score=22.07 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=12.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 55 DRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 55 e~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
.++.....++++++++...|+++|.
T Consensus 145 ~~~~~~~~~~~~~~~~l~~l~~~l~ 169 (525)
T TIGR02231 145 TEDREAERRIRELEKQLSELQNELN 169 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555555555555554
No 156
>PF04822 Takusan: Takusan; InterPro: IPR006907 This family includes several uncharacterised muridae (mouse and rat) proteins.
Probab=23.63 E-value=2.3e+02 Score=18.84 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=18.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhcCC
Q psy2907 57 LSETSGKLSMVEKERDSLQRQIAASLP 83 (88)
Q Consensus 57 L~~~q~rL~eve~Erd~LqrQl~~~lP 83 (88)
|...-..|+-+.+|||.|++.|....+
T Consensus 21 lE~L~~eL~~it~ERnELr~~L~~~~~ 47 (84)
T PF04822_consen 21 LERLKFELQKITKERNELRDILALYTE 47 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334445577888899999988875443
No 157
>KOG3230|consensus
Probab=23.37 E-value=1.5e+02 Score=23.35 Aligned_cols=28 Identities=36% Similarity=0.509 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy2907 47 LDNLRETQDRLSETSGKLSMVEKERDSLQRQ 77 (88)
Q Consensus 47 letLretQe~L~~~q~rL~eve~Erd~LqrQ 77 (88)
-|-||+.|..|..+. .|+++||-.|+.|
T Consensus 11 ~e~Lr~nqRal~~a~---ReleRer~~le~q 38 (224)
T KOG3230|consen 11 AELLRENQRALNKAT---RELERERQKLELQ 38 (224)
T ss_pred HHHHHHhHHHHHHHH---HHHHHHHHHHHHH
Confidence 367899999988765 5688999988865
No 158
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=23.30 E-value=2.5e+02 Score=19.08 Aligned_cols=39 Identities=26% Similarity=0.403 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy2907 42 EKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIAA 80 (88)
Q Consensus 42 ERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~~ 80 (88)
+.|.....|-.++..+...+.+|..+...|+....++..
T Consensus 17 ~ee~a~~~L~~a~~~~~~~~~~L~~L~~~~~~~~~~~~~ 55 (146)
T PRK07720 17 EKEKALGEYEEAVSRFEQVAEKLYELLKQKEDLEQAKEE 55 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555667778888888888899999998888887653
No 159
>PF14131 DUF4298: Domain of unknown function (DUF4298)
Probab=23.10 E-value=2.3e+02 Score=18.53 Aligned_cols=34 Identities=21% Similarity=0.377 Sum_probs=24.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy2907 36 MVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEK 69 (88)
Q Consensus 36 MvnMLdERDKLletLretQe~L~~~q~rL~eve~ 69 (88)
|=..+++=-++++.|.++.+++..++.+.+++.+
T Consensus 5 me~~y~~~~~~l~~le~~l~~~~~~~~~~~~L~~ 38 (90)
T PF14131_consen 5 MEKIYNEWCELLEELEEALEKWQEAQPDYRKLRD 38 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777888888888888888877765543
No 160
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=23.06 E-value=3.1e+02 Score=20.09 Aligned_cols=26 Identities=23% Similarity=0.403 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhHHHHHHHH-HHHHHH
Q psy2907 51 RETQDRLSETSGKLSMVEKE-RDSLQR 76 (88)
Q Consensus 51 retQe~L~~~q~rL~eve~E-rd~Lqr 76 (88)
.++++.|..+..+.+++..| ||.+..
T Consensus 65 a~ye~~L~~Ar~eA~~I~~e~~~~~~a 91 (155)
T PRK06569 65 KYYNEEIDKTNTEIDRLKKEKIDSLES 91 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555556666666666666 666554
No 161
>KOG1003|consensus
Probab=22.98 E-value=1.7e+02 Score=22.88 Aligned_cols=39 Identities=28% Similarity=0.468 Sum_probs=28.4
Q ss_pred hhhhHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy2907 40 FDEKDKLL-DNLRETQDRLSETSGKLSMVEKERDSLQRQI 78 (88)
Q Consensus 40 LdERDKLl-etLretQe~L~~~q~rL~eve~Erd~LqrQl 78 (88)
|..|=-|+ +-|.-+|++|..++.||.+.++.-|.-.|+.
T Consensus 9 lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~ 48 (205)
T KOG1003|consen 9 LNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGM 48 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHH
Confidence 34444443 5688899999999999999888777555543
No 162
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=22.90 E-value=2.2e+02 Score=18.24 Aligned_cols=33 Identities=27% Similarity=0.426 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 47 LDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 47 letLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
-+.+.+.+++|...+.+++.+..+++.+..++.
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 101 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQALEAQIA 101 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666666554
No 163
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=22.64 E-value=2.5e+02 Score=18.88 Aligned_cols=47 Identities=15% Similarity=0.331 Sum_probs=32.2
Q ss_pred hHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy2907 31 NFEQLMVT-MFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQ 77 (88)
Q Consensus 31 nfEQLMvn-MLdERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQ 77 (88)
..=||++- +|.-++.|..++...++.+..++...+.+.+....+...
T Consensus 62 rLaQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 109 (118)
T PF13815_consen 62 RLAQLSIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEE 109 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455553 568888898888888888888877766665555544443
No 164
>PRK10884 SH3 domain-containing protein; Provisional
Probab=22.57 E-value=3.2e+02 Score=20.60 Aligned_cols=26 Identities=15% Similarity=0.404 Sum_probs=12.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 54 QDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 54 Qe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
|+.++.......++.+++..|+.++.
T Consensus 124 ~~~~~~~~~~~~~L~~~n~~L~~~l~ 149 (206)
T PRK10884 124 QQKVAQSDSVINGLKEENQKLKNQLI 149 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344445555555555443
No 165
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=22.55 E-value=2.7e+02 Score=23.74 Aligned_cols=19 Identities=21% Similarity=0.461 Sum_probs=8.2
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q psy2907 41 DEKDKLLDNLRETQDRLSE 59 (88)
Q Consensus 41 dERDKLletLretQe~L~~ 59 (88)
+++.||...|-+....+..
T Consensus 59 ~~~~kL~~~lk~~e~~i~~ 77 (420)
T COG4942 59 DQRAKLEKQLKSLETEIAS 77 (420)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444333333
No 166
>KOG4673|consensus
Probab=22.40 E-value=1.4e+02 Score=27.81 Aligned_cols=28 Identities=32% Similarity=0.503 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 52 ETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 52 etQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
|+-.+++....|++-.-||||.|+++++
T Consensus 406 e~~QRva~lEkKvqa~~kERDalr~e~k 433 (961)
T KOG4673|consen 406 EYHQRVATLEKKVQALTKERDALRREQK 433 (961)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4556788889999999999999999876
No 167
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=22.38 E-value=2.7e+02 Score=24.87 Aligned_cols=41 Identities=27% Similarity=0.448 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHhhcCCCCC
Q psy2907 46 LLDNLRETQDRLSETSGKLSMVEKERDSLQR---QIAASLPQVG 86 (88)
Q Consensus 46 LletLretQe~L~~~q~rL~eve~Erd~Lqr---Ql~~~lPqef 86 (88)
|...|-+++.+|..++..+..=++|-..|+. |+-+.+|.+.
T Consensus 620 LfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av~p~~~ 663 (697)
T PF09726_consen 620 LFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAVMPSDS 663 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 6778899999999999999999999999998 6667788743
No 168
>PRK09039 hypothetical protein; Validated
Probab=22.37 E-value=2.4e+02 Score=22.55 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcC
Q psy2907 48 DNLRETQDRLSETSGKLSMVEKERDSLQRQIAASL 82 (88)
Q Consensus 48 etLretQe~L~~~q~rL~eve~Erd~LqrQl~~~l 82 (88)
.+|...+..|+.++.+.++.....+.|++.|+.+|
T Consensus 151 ~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 151 RQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555443
No 169
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=22.23 E-value=2.3e+02 Score=24.65 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy2907 41 DEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQI 78 (88)
Q Consensus 41 dERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl 78 (88)
=+=|-|.-.||-....|..++..+.+++.||+....-+
T Consensus 74 fqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El 111 (499)
T COG4372 74 FQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSEL 111 (499)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578899999999999999999999999888766433
No 170
>PF11315 Med30: Mediator complex subunit 30; InterPro: IPR021019 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med30 is a metazoan-specific subunit of Mediator [], having no homologues in yeasts.
Probab=22.05 E-value=3.2e+02 Score=20.05 Aligned_cols=35 Identities=17% Similarity=0.434 Sum_probs=26.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy2907 39 MFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDS 73 (88)
Q Consensus 39 MLdERDKLletLretQe~L~~~q~rL~eve~Erd~ 73 (88)
.++||.+|+|++.+--.+|-+.--++...--|-+.
T Consensus 109 ~~~er~el~e~v~~KN~qLk~iid~lR~~iweIN~ 143 (150)
T PF11315_consen 109 LLEERKELIEQVKQKNQQLKEIIDQLRNIIWEINT 143 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999998888877777777776665555443
No 171
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=22.01 E-value=1.8e+02 Score=24.73 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 42 EKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 42 ERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
-.|||.++|+..+..-.-...+...+...|..++.++.
T Consensus 433 Yvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~ 470 (507)
T PF05600_consen 433 YVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQ 470 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777776666666666665555555555555443
No 172
>PF04614 Pex19: Pex19 protein family; InterPro: IPR006708 Peroxisome(s) form an intracellular compartment, bounded by a typical lipid bilayer membrane. Peroxisome functions are often specialised by organism and cell type; two widely distributed and well-conserved functions are H2O2-based respiration and fatty acid beta-oxidation. Other functions include ether lipid (plasmalogen) synthesis and cholesterol synthesis in animals, the glyoxylate cycle in germinating seeds ("glyoxysomes"), photorespiration in leaves, glycolysis in trypanosomes ("glycosomes"), and methanol and/or amine oxidation and assimilation in some yeasts. PEX genes encode the machinery ("peroxins") required to assemble the peroxisome. Membrane assembly and maintenance requires three of these (peroxins 3, 16, and 19) and may occur without the import of the matrix (lumen) enzymes. Matrix protein import follows a branched pathway of soluble recycling receptors, with one branch for each class of peroxisome targeting sequence (two are well characterised), and a common trunk for all. At least one of these receptors, Pex5p, enters and exits peroxisomes as it functions. Proliferation of the organelle is regulated by Pex11p. Peroxisome biogenesis is remarkably conserved among eukaryotes. A group of fatal, inherited neuropathologies are recognised as peroxisome biogenesis diseases. ; GO: 0005777 peroxisome; PDB: 2WL8_B 2W85_B.
Probab=21.54 E-value=3.1e+02 Score=20.97 Aligned_cols=46 Identities=33% Similarity=0.620 Sum_probs=25.4
Q ss_pred CCCcChHHHHHHHhhh---hhHHHHHHHHHHHHH----HHHHHhHHHHHHHHH
Q psy2907 26 SGEDANFEQLMVTMFD---EKDKLLDNLRETQDR----LSETSGKLSMVEKER 71 (88)
Q Consensus 26 ~~~~~nfEQLMvnMLd---ERDKLletLretQe~----L~~~q~rL~eve~Er 71 (88)
.+++..|..+|.+|+. -+|-|++.|.|..+. |.....+|..-.++|
T Consensus 118 ~~~~~~~~~~l~~mm~qL~SKevLYePmKel~~kyP~wL~~n~~~l~~ed~~r 170 (248)
T PF04614_consen 118 GGGDEDFDKMLQGMMQQLLSKEVLYEPMKELRDKYPEWLEENKSKLSAEDYER 170 (248)
T ss_dssp -------HHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHCCCS-HHHHHH
T ss_pred CCCchhHHHHHHHHHHHhccHhhhhhhHHHHHHHhHHHHHhCcCcCCHHHHHH
Confidence 3566799999888874 478888888887776 344444454444443
No 173
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=21.49 E-value=4e+02 Score=21.54 Aligned_cols=41 Identities=12% Similarity=0.232 Sum_probs=30.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 39 MFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 39 MLdERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
.-+...|+-++|.+.+..+...+.++..+..+-..+++++.
T Consensus 72 l~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~ 112 (301)
T PF06120_consen 72 LRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLA 112 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34667788888888888888888888877777777766654
No 174
>PF09236 AHSP: Alpha-haemoglobin stabilising protein; InterPro: IPR015317 Alpha-haemoglobin stabilising protein (AHSP) acts a molecular chaperone for free alpha-haemoglobin, preventing the harmful aggregation of alpha-haemoglobin during normal erythroid cell development: it specifically protects free alpha-haemoglobin from precipitation. AHSP adopts a helical secondary structure consisting of an elongated antiparallel three alpha-helix bundle []. ; GO: 0030492 hemoglobin binding, 0006457 protein folding, 0020027 hemoglobin metabolic process, 0030097 hemopoiesis, 0050821 protein stabilization; PDB: 1Y01_A 1XZY_A 3OVU_A 1W0A_A 3IA3_C 1Z8U_A 1W0B_A 1W09_A.
Probab=21.36 E-value=2.3e+02 Score=19.48 Aligned_cols=18 Identities=28% Similarity=0.567 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHHHHHHH
Q psy2907 41 DEKDKLLDNLRETQDRLS 58 (88)
Q Consensus 41 dERDKLletLretQe~L~ 58 (88)
.||||.++-|++.=++|+
T Consensus 57 qeqdrAlqel~qeL~tla 74 (89)
T PF09236_consen 57 QEQDRALQELQQELNTLA 74 (89)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 689999888887555554
No 175
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=21.31 E-value=1.6e+02 Score=18.20 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=17.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHh
Q psy2907 59 ETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 59 ~~q~rL~eve~Erd~LqrQl~ 79 (88)
.+..+|.+++.|...|+.+|+
T Consensus 26 ~a~~rl~~l~~EN~~Lr~eL~ 46 (52)
T PF12808_consen 26 AARKRLSKLEGENRLLRAELE 46 (52)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 455679999999999999887
No 176
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=21.06 E-value=3e+02 Score=24.24 Aligned_cols=30 Identities=27% Similarity=0.514 Sum_probs=21.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy2907 41 DEKDKLLDNLRETQDRLSETSGKLSMVEKE 70 (88)
Q Consensus 41 dERDKLletLretQe~L~~~q~rL~eve~E 70 (88)
.|-+.|.+.||.++++|..++.+..-+.+|
T Consensus 283 ~e~e~LkeqLr~~qe~lqaSqq~~~~L~~E 312 (546)
T PF07888_consen 283 QENEALKEQLRSAQEQLQASQQEAELLRKE 312 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678888888888888888774433333
No 177
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=20.93 E-value=2.7e+02 Score=18.61 Aligned_cols=31 Identities=19% Similarity=0.336 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 49 NLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 49 tLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
.+...+-.+.+..++++.+...-+++.+|++
T Consensus 66 dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~ 96 (106)
T PF10805_consen 66 DVHDLQLELAELRGELKELSARLQGVSHQLD 96 (106)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3455566666667777777777777777665
No 178
>PLN02678 seryl-tRNA synthetase
Probab=20.73 E-value=2.7e+02 Score=23.45 Aligned_cols=28 Identities=14% Similarity=0.334 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy2907 46 LLDNLRETQDRLSETSGKLSMVEKERDS 73 (88)
Q Consensus 46 LletLretQe~L~~~q~rL~eve~Erd~ 73 (88)
|.+..++..+.+...+.++++++.+...
T Consensus 76 l~~~~~~Lk~ei~~le~~~~~~~~~l~~ 103 (448)
T PLN02678 76 LIAETKELKKEITEKEAEVQEAKAALDA 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444433
No 179
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=20.66 E-value=5e+02 Score=21.60 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 44 DKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 44 DKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
..|...+....+.+..++.++++..+...+|+.++.
T Consensus 88 ~~l~~~~~~~~~~l~~~e~~~~~l~~q~~~Lq~~~~ 123 (390)
T PRK10920 88 QELEGILKQQAKALDQANRQQAALAKQLDELQQKVA 123 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555667777777777788888877765
No 180
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=20.49 E-value=2.7e+02 Score=18.65 Aligned_cols=28 Identities=14% Similarity=0.410 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy2907 45 KLLDNLRETQDRLSETSGKLSMVEKERD 72 (88)
Q Consensus 45 KLletLretQe~L~~~q~rL~eve~Erd 72 (88)
+|-....+++..|..++.+++-+++...
T Consensus 5 ~l~~e~e~~~~kl~q~e~~~k~L~nr~k 32 (86)
T PF12958_consen 5 ELQAEIEKAEKKLEQAEHKIKQLENRKK 32 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444433333
No 181
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=20.45 E-value=2.1e+02 Score=20.19 Aligned_cols=14 Identities=21% Similarity=0.197 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHh
Q psy2907 66 MVEKERDSLQRQIA 79 (88)
Q Consensus 66 eve~Erd~LqrQl~ 79 (88)
.+.+..+.|+++++
T Consensus 55 s~~qr~~eLqaki~ 68 (107)
T PF09304_consen 55 SRNQRIAELQAKID 68 (107)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444445555544
No 182
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=20.32 E-value=2.4e+02 Score=17.74 Aligned_cols=39 Identities=18% Similarity=0.282 Sum_probs=34.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 41 DEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 41 dERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
+|=.|.-.+-..++..|..+..|-++++.+-+.|+.++.
T Consensus 18 eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~e 56 (61)
T PF08826_consen 18 EELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEME 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444677888889999999999999999999999998875
No 183
>PF01865 PhoU_div: Protein of unknown function DUF47; InterPro: IPR018445 This family includes prokaryotic proteins of unknown function, as well as a protein annotated as the pit accessory protein from Rhizobium meliloti (Sinorhizobium meliloti) (O30498 from SWISSPROT). However, the function of this protein is also unknown (Pit stands for Phosphate transport) [].; PDB: 2OLT_C 2IIU_C 3L39_A.
Probab=20.23 E-value=1.3e+02 Score=21.32 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=24.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhcCCCCC
Q psy2907 55 DRLSETSGKLSMVEKERDSLQRQIAASLPQVG 86 (88)
Q Consensus 55 e~L~~~q~rL~eve~Erd~LqrQl~~~lPqef 86 (88)
+.....-.++++.||+=|.++|++-..|++.|
T Consensus 40 ~~~~~~~~~i~~lE~~aD~i~~~i~~~L~~~f 71 (214)
T PF01865_consen 40 EDVEELLEEIKELEHEADEIKREIREELYKSF 71 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35566667788999999999998887766544
No 184
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=20.16 E-value=3.8e+02 Score=19.97 Aligned_cols=36 Identities=19% Similarity=0.501 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 44 DKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 44 DKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
|++-+.++....+|..+..|...+++.-..|+++++
T Consensus 172 ~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id 207 (237)
T PF00261_consen 172 DEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEID 207 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666667777777787777777777777777766654
No 185
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=20.00 E-value=1.3e+02 Score=24.16 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhH
Q psy2907 41 DEKDKLLDNLRETQDRLSETSGK 63 (88)
Q Consensus 41 dERDKLletLretQe~L~~~q~r 63 (88)
+||.+|+++++..+.+|.+.+.+
T Consensus 226 ~eke~L~~qv~klk~qLee~~~~ 248 (302)
T PF09738_consen 226 DEKEELLEQVRKLKLQLEERQSE 248 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Done!