Query psy2907
Match_columns 88
No_of_seqs 70 out of 72
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 20:38:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2907.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2907hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u1c_A Tropomyosin alpha-1 cha 88.5 1.5 5E-05 28.6 6.0 38 41-78 58-95 (101)
2 3u59_A Tropomyosin beta chain; 86.7 2.2 7.4E-05 27.5 6.0 39 41-79 58-96 (101)
3 2dnx_A Syntaxin-12; snare, HAB 86.7 5.3 0.00018 26.6 8.1 29 41-69 48-76 (130)
4 2fxo_A Myosin heavy chain, car 85.9 4.6 0.00016 26.9 7.4 49 31-79 38-86 (129)
5 2l5g_A GPS2 protein, G protein 85.6 1.6 5.5E-05 25.0 4.3 30 48-77 8-37 (38)
6 1wt6_A Myotonin-protein kinase 81.1 4.9 0.00017 26.2 5.8 38 42-79 25-62 (81)
7 2pnv_A Small conductance calci 75.1 9.6 0.00033 21.9 5.7 37 46-83 7-43 (43)
8 1ic2_A Tropomyosin alpha chain 72.4 14 0.00049 22.7 6.7 43 36-78 8-50 (81)
9 3q8t_A Beclin-1; autophagy, AT 71.1 16 0.00053 23.6 6.2 39 41-79 4-42 (96)
10 3iv1_A Tumor susceptibility ge 70.7 11 0.00039 24.1 5.3 32 47-78 27-62 (78)
11 1joc_A EEA1, early endosomal a 68.2 16 0.00055 24.2 5.9 40 41-80 18-57 (125)
12 1pzr_A Erythronolide synthase; 67.2 14 0.00049 22.3 5.0 27 43-69 30-56 (60)
13 1ezj_A Nucleocapsid phosphopro 65.0 28 0.00094 23.9 6.6 42 40-81 68-109 (115)
14 3nmd_A CGMP dependent protein 56.5 35 0.0012 21.6 5.6 33 47-79 32-64 (72)
15 2khk_A ATP synthase subunit B; 56.4 16 0.00053 20.2 3.6 39 38-76 2-41 (53)
16 4fla_A Regulation of nuclear P 56.3 47 0.0016 23.0 7.0 47 36-83 91-148 (152)
17 4b6x_A AVRRPS4, avirulence pro 53.4 45 0.0016 22.0 5.9 46 32-79 33-79 (90)
18 2fzt_A Hypothetical protein TM 53.4 25 0.00087 22.8 4.6 49 30-79 18-68 (79)
19 1joc_A EEA1, early endosomal a 52.6 45 0.0015 21.9 5.9 34 39-72 2-35 (125)
20 3hnw_A Uncharacterized protein 50.8 55 0.0019 22.2 7.3 25 53-77 94-118 (138)
21 4e61_A Protein BIM1; EB1-like 48.5 50 0.0017 22.1 5.6 33 42-74 12-44 (106)
22 1hlo_A Protein (transcription 48.4 34 0.0012 20.7 4.5 31 47-77 49-79 (80)
23 1lwu_C Fibrinogen gamma chain; 48.1 51 0.0018 25.5 6.4 41 36-76 7-47 (323)
24 3u59_A Tropomyosin beta chain; 45.9 55 0.0019 20.7 6.6 48 32-79 7-54 (101)
25 3oja_A Leucine-rich immune mol 45.2 60 0.0021 24.6 6.3 39 40-78 448-486 (487)
26 3a7p_A Autophagy protein 16; c 43.6 53 0.0018 23.3 5.4 35 41-75 92-130 (152)
27 4h22_A Leucine-rich repeat fli 43.5 70 0.0024 21.4 5.7 50 30-79 9-68 (103)
28 3bas_A Myosin heavy chain, str 43.5 58 0.002 20.3 7.3 33 31-63 39-71 (89)
29 3m91_A Proteasome-associated A 42.6 41 0.0014 19.7 4.0 29 38-66 20-48 (51)
30 4etp_A Kinesin-like protein KA 42.4 92 0.0031 24.2 7.1 50 30-79 6-55 (403)
31 1ykh_B RNA polymerase II holoe 40.9 51 0.0017 22.1 4.8 34 48-81 92-125 (132)
32 4egx_A Kinesin-like protein KI 39.6 88 0.003 21.8 6.1 22 39-60 13-35 (184)
33 3u1c_A Tropomyosin alpha-1 cha 39.3 73 0.0025 20.3 6.7 46 33-78 8-53 (101)
34 3twe_A Alpha4H; unknown functi 38.7 44 0.0015 17.5 3.6 22 44-65 4-25 (27)
35 1yke_B RNA polymerase II holoe 38.5 56 0.0019 22.6 4.8 35 47-81 91-125 (151)
36 2d4y_A HAP1, flagellar HOOK-as 38.2 16 0.00056 28.3 2.2 16 38-53 133-148 (463)
37 3f5h_A Type I polyketide synth 37.9 69 0.0024 19.8 4.7 29 42-70 35-63 (68)
38 3m1f_V VOPL, putative uncharac 37.5 16 0.00055 19.9 1.5 12 41-52 4-15 (31)
39 3o0z_A RHO-associated protein 36.9 63 0.0022 23.2 5.0 31 49-79 49-79 (168)
40 3etv_A Protein transport prote 35.5 21 0.00071 28.6 2.4 23 58-80 12-34 (355)
41 1yf2_A Type I restriction-modi 35.5 1.1E+02 0.0037 21.6 6.1 50 29-78 365-416 (425)
42 3l39_A Putative PHOU-like phos 35.5 39 0.0013 23.8 3.7 32 55-86 56-87 (227)
43 3oja_B Anopheles plasmodium-re 35.5 1.5E+02 0.0051 22.8 7.4 14 64-77 539-552 (597)
44 3u06_A Protein claret segregat 35.3 1.2E+02 0.0043 23.7 6.9 50 30-79 6-55 (412)
45 4egx_A Kinesin-like protein KI 34.2 93 0.0032 21.7 5.5 31 41-71 5-39 (184)
46 2v66_B Nuclear distribution pr 34.0 99 0.0034 20.7 5.3 24 54-77 48-71 (111)
47 3q0x_A Centriole protein; cent 33.8 1E+02 0.0035 22.9 5.9 28 52-79 175-202 (228)
48 2wt7_B Transcription factor MA 31.5 1.1E+02 0.0036 19.8 6.2 39 41-79 48-86 (90)
49 3ajw_A Flagellar FLIJ protein; 31.5 1E+02 0.0034 19.5 6.7 52 31-82 9-60 (150)
50 2dgc_A Protein (GCN4); basic d 31.2 79 0.0027 18.7 4.0 26 54-79 29-54 (63)
51 3vkg_A Dynein heavy chain, cyt 30.8 76 0.0026 31.7 5.8 35 45-79 2018-2052(3245)
52 3u06_A Protein claret segregat 29.3 1.1E+02 0.0038 23.9 5.7 39 41-79 3-41 (412)
53 1zxa_A CGMP-dependent protein 28.5 1.1E+02 0.0037 18.9 4.5 46 26-74 6-51 (67)
54 2l2l_A Transcriptional repress 28.0 34 0.0011 19.9 1.9 24 41-67 4-27 (43)
55 3cve_A Homer protein homolog 1 27.2 1.2E+02 0.004 18.9 5.6 21 43-63 16-36 (72)
56 2dfs_A Myosin-5A; myosin-V, in 27.2 1.5E+02 0.0052 26.1 6.6 18 62-79 1023-1040(1080)
57 1jad_A PLC-beta, phospholipase 27.1 76 0.0026 24.0 4.2 41 39-79 179-220 (251)
58 1ydx_A Type I restriction enzy 27.1 1.8E+02 0.006 21.0 6.1 39 40-78 354-392 (406)
59 3cvf_A Homer-3, homer protein 27.0 1.2E+02 0.0042 19.1 5.6 22 42-63 21-42 (79)
60 2dq0_A Seryl-tRNA synthetase; 26.8 82 0.0028 24.9 4.5 38 41-78 69-106 (455)
61 1ses_A Seryl-tRNA synthetase; 26.3 1.1E+02 0.0038 23.8 5.2 35 42-76 65-99 (421)
62 2k48_A Nucleoprotein; viral pr 26.0 98 0.0033 20.9 4.2 26 44-69 38-63 (107)
63 4fi5_A Nucleoprotein; structur 25.9 97 0.0033 21.1 4.2 24 45-68 26-49 (113)
64 1go4_E MAD1 (mitotic arrest de 25.9 1E+02 0.0035 20.3 4.2 27 53-79 10-36 (100)
65 2olt_A Hypothetical protein; s 25.7 1.6E+02 0.0055 20.0 6.8 57 30-86 17-77 (227)
66 2ic6_A Nucleocapsid protein; h 24.5 1.2E+02 0.0041 19.4 4.2 25 44-68 8-32 (78)
67 1m1j_C Fibrinogen gamma chain; 23.9 1.9E+02 0.0064 23.0 6.1 42 36-77 86-127 (409)
68 3sl9_C B-cell CLL/lymphoma 9 p 23.7 70 0.0024 19.2 2.8 18 40-57 15-32 (55)
69 1fxk_A Prefoldin; archaeal pro 23.7 1.3E+02 0.0044 18.2 4.7 26 54-79 7-32 (107)
70 2wl8_A Peroxisomal biogenesis 23.6 1.2E+02 0.0039 20.7 4.3 43 29-71 11-60 (126)
71 3emo_C HIA (adhesin); transmem 23.5 1.9E+02 0.0066 20.1 6.1 10 27-36 52-61 (162)
72 1yf2_A Type I restriction-modi 23.2 2E+02 0.0068 20.3 6.1 49 30-78 156-206 (425)
73 1ci6_A Transcription factor AT 23.1 1.2E+02 0.0042 17.7 4.0 24 56-79 24-47 (63)
74 3ni0_A Bone marrow stromal ant 22.6 1.8E+02 0.0061 19.4 5.4 36 46-81 51-86 (99)
75 1u7k_A GAG polyprotein; capsid 22.5 71 0.0024 22.2 3.0 24 30-53 53-78 (131)
76 1wle_A Seryl-tRNA synthetase; 22.3 1.4E+02 0.0049 24.1 5.2 29 45-73 120-148 (501)
77 1lrz_A FEMA, factor essential 22.1 2.6E+02 0.0087 21.1 6.8 13 28-40 221-233 (426)
78 1nlw_A MAD protein, MAX dimeri 21.7 1.5E+02 0.005 18.2 5.3 29 48-76 40-68 (80)
79 1dh3_A Transcription factor CR 21.2 1.3E+02 0.0044 17.3 4.0 26 54-79 21-46 (55)
80 3htk_A Structural maintenance 21.1 1.2E+02 0.0041 16.9 4.9 36 44-79 22-57 (60)
81 1uix_A RHO-associated kinase; 21.0 1.6E+02 0.0055 18.4 6.8 44 36-79 6-49 (71)
82 1am9_A Srebp-1A, protein (ster 20.8 1.5E+02 0.0052 18.0 5.1 33 47-79 42-74 (82)
83 3lof_A Heat shock 70 kDa prote 20.2 1.6E+02 0.0056 18.1 4.6 36 41-76 37-73 (113)
84 3m6z_A Topoisomerase V; helix- 20.0 1.3E+02 0.0045 23.5 4.4 50 30-79 227-291 (380)
No 1
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=88.46 E-value=1.5 Score=28.57 Aligned_cols=38 Identities=32% Similarity=0.494 Sum_probs=34.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy2907 41 DEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQI 78 (88)
Q Consensus 41 dERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl 78 (88)
++-|++.+.|.+++..|..+..+..+.+.+..+|+|-+
T Consensus 58 ~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rri 95 (101)
T 3u1c_A 58 DSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999999999999999999954
No 2
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=86.75 E-value=2.2 Score=27.50 Aligned_cols=39 Identities=33% Similarity=0.500 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 41 DEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 41 dERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
++-|++.+.|.+++..|..+..+..+.+.+..+|+|-+.
T Consensus 58 ~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriq 96 (101)
T 3u59_A 58 DEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999999999999999999999999999999553
No 3
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.68 E-value=5.3 Score=26.64 Aligned_cols=29 Identities=17% Similarity=0.121 Sum_probs=23.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy2907 41 DEKDKLLDNLRETQDRLSETSGKLSMVEK 69 (88)
Q Consensus 41 dERDKLletLretQe~L~~~q~rL~eve~ 69 (88)
+-|+||-+....|.+-...+...|+++..
T Consensus 48 ~LR~kl~~~~~~t~~l~k~ts~~lk~L~~ 76 (130)
T 2dnx_A 48 KLQENLQQLQHSTNQLAKETNELLKELGS 76 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67999999999999888888888776544
No 4
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=85.86 E-value=4.6 Score=26.94 Aligned_cols=49 Identities=22% Similarity=0.413 Sum_probs=40.1
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 31 NFEQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 31 nfEQLMvnMLdERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
.+|.-+++++.|+..|..+|..-++.++.+.-++..+...+..|..+++
T Consensus 38 ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~ 86 (129)
T 2fxo_A 38 ELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVK 86 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4567799999999999999999999999988887777776666666554
No 5
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=85.57 E-value=1.6 Score=25.03 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy2907 48 DNLRETQDRLSETSGKLSMVEKERDSLQRQ 77 (88)
Q Consensus 48 etLretQe~L~~~q~rL~eve~Erd~LqrQ 77 (88)
-||.||++++...+.||..+..|+-.|=-|
T Consensus 8 mTLeEtkeQi~~l~~kl~~LkeEKHQLFlQ 37 (38)
T 2l5g_A 8 MSLEETKEQILKLEEKLLALQEEKHQLFLQ 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 489999999999999999999998776444
No 6
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=81.11 E-value=4.9 Score=26.22 Aligned_cols=38 Identities=11% Similarity=0.209 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 42 EKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 42 ERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
-+.-|.|-|+.++..+..++.||+|.++.+..|...+.
T Consensus 25 AKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~ 62 (81)
T 1wt6_A 25 TRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVR 62 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999988876543
No 7
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=75.09 E-value=9.6 Score=21.92 Aligned_cols=37 Identities=19% Similarity=0.406 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcCC
Q psy2907 46 LLDNLRETQDRLSETSGKLSMVEKERDSLQRQIAASLP 83 (88)
Q Consensus 46 LletLretQe~L~~~q~rL~eve~Erd~LqrQl~~~lP 83 (88)
..|-+.|-+.+=.....|+.-.|..-|.|+++|. +||
T Consensus 7 mydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~-aLp 43 (43)
T 2pnv_A 7 MYDMISDLNERSEDFEKRIVTLETKLETLIGSIH-ALP 43 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-cCC
Confidence 3455666667777777888888888999999998 666
No 8
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=72.42 E-value=14 Score=22.69 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=36.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy2907 36 MVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQI 78 (88)
Q Consensus 36 MvnMLdERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl 78 (88)
|.+|=.+-|...+.+..++..|..+..+....+.|..+|++-+
T Consensus 8 m~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKi 50 (81)
T 1ic2_A 8 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKL 50 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6677788899999999999999999999888888988988844
No 9
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=71.12 E-value=16 Score=23.56 Aligned_cols=39 Identities=21% Similarity=0.280 Sum_probs=27.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 41 DEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 41 dERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
++++.|-..|+..+..=+..-..|.++++++..+..+|.
T Consensus 4 ~~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~ 42 (96)
T 3q8t_A 4 SDSEQLQRELKELALEEERLIQELEDVEKNRKVVAENLE 42 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 456666777777777777777777788888877777664
No 10
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=70.73 E-value=11 Score=24.10 Aligned_cols=32 Identities=25% Similarity=0.479 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHH
Q psy2907 47 LDNLRETQDRLSETSGKLS----MVEKERDSLQRQI 78 (88)
Q Consensus 47 letLretQe~L~~~q~rL~----eve~Erd~LqrQl 78 (88)
+++|+-|++-|-..++||. +++.|++.|..-+
T Consensus 27 l~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni 62 (78)
T 3iv1_A 27 LNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNI 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999976 5566666666543
No 11
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=68.20 E-value=16 Score=24.21 Aligned_cols=40 Identities=28% Similarity=0.351 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy2907 41 DEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIAA 80 (88)
Q Consensus 41 dERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~~ 80 (88)
.|-++|-+.+.+.+..|..+...+++...+..+|+-....
T Consensus 18 ~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~~~~~ 57 (125)
T 1joc_A 18 GEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKHTQ 57 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence 4566666777777777777777778888877787765443
No 12
>1pzr_A Erythronolide synthase; four helix bundle, homodimer, transferase; NMR {Saccharopolyspora erythraea} SCOP: a.38.2.1
Probab=67.17 E-value=14 Score=22.26 Aligned_cols=27 Identities=30% Similarity=0.427 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy2907 43 KDKLLDNLRETQDRLSETSGKLSMVEK 69 (88)
Q Consensus 43 RDKLletLretQe~L~~~q~rL~eve~ 69 (88)
-+||.+-|+-+-..|..+..++.+++.
T Consensus 30 eeKLrdyLkrvtadL~r~RrRLrelea 56 (60)
T 1pzr_A 30 EEKLRRYLKRTVTELDSVTARLREVEH 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 379999999888888888888888764
No 13
>1ezj_A Nucleocapsid phosphoprotein; four stranded coiled coil, viral polymerase, T viral protein, transferase; 1.90A {Sendai virus} SCOP: h.1.14.1
Probab=65.02 E-value=28 Score=23.88 Aligned_cols=42 Identities=24% Similarity=0.393 Sum_probs=37.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Q psy2907 40 FDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIAAS 81 (88)
Q Consensus 40 LdERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~~~ 81 (88)
.||.|-+|.+..+--+++-+...||-|-+||..||-.-+-+.
T Consensus 68 v~en~~~L~QIQ~ei~s~rd~hkR~~E~QkEQ~SL~~s~lS~ 109 (115)
T 1ezj_A 68 VDENKQLLKQIQESVESFRDIYKRFSEYQKEQNSLLMSNLST 109 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Confidence 489999999999999999999999999999999997654433
No 14
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=56.53 E-value=35 Score=21.55 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 47 LDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 47 letLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
.+.||.-++.+..-+.+|.+-+.+-..|+.+|+
T Consensus 32 ~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 32 IEELRQRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355777778888888889999999999999887
No 15
>2khk_A ATP synthase subunit B; F1FO ATP synthase, spectroscopy, ATP synthesis, inner membrane, cell membrane, CF(0), hydrogen ION transpor transport; NMR {Escherichia coli}
Probab=56.41 E-value=16 Score=20.19 Aligned_cols=39 Identities=5% Similarity=0.126 Sum_probs=26.8
Q ss_pred HhhhhhH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy2907 38 TMFDEKD-KLLDNLRETQDRLSETSGKLSMVEKERDSLQR 76 (88)
Q Consensus 38 nMLdERD-KLletLretQe~L~~~q~rL~eve~Erd~Lqr 76 (88)
++|++|. ++-+.|.++......++..+.+.+......+.
T Consensus 2 ~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~e~~l~~Ar~ 41 (53)
T 2khk_A 2 AAIEKRQKEIADGLASAERAHKDLDLAKASATDQLKKAKA 41 (53)
T ss_dssp CCSSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666664 66677888877777777777777666555544
No 16
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=56.25 E-value=47 Score=23.00 Aligned_cols=47 Identities=32% Similarity=0.453 Sum_probs=27.4
Q ss_pred HHHhhhhhHHHHHHHHHHHH----HHHHHHhH-------HHHHHHHHHHHHHHHhhcCC
Q psy2907 36 MVTMFDEKDKLLDNLRETQD----RLSETSGK-------LSMVEKERDSLQRQIAASLP 83 (88)
Q Consensus 36 MvnMLdERDKLletLretQe----~L~~~q~r-------L~eve~Erd~LqrQl~~~lP 83 (88)
+..=+++|.+|...|+++.. .|+++..+ +..|..-|..|...+. +||
T Consensus 91 L~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~-sLP 148 (152)
T 4fla_A 91 LAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQ-SLP 148 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCC
Confidence 34445889999888887655 44444444 4445444555555544 666
No 17
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=53.45 E-value=45 Score=21.96 Aligned_cols=46 Identities=33% Similarity=0.439 Sum_probs=29.5
Q ss_pred HHHHHHHhhhhhHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 32 FEQLMVTMFDEKDKLLDNLRET-QDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 32 fEQLMvnMLdERDKLletLret-Qe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
=+|+|||=| |+.|.|.-.|. ..-++.++..|...-.+--+|+||+.
T Consensus 33 DKQ~~i~~L--t~eLq~A~~eaNpaeIA~~~~~L~qAraDL~~l~r~~a 79 (90)
T 4b6x_A 33 DKQLMVNNL--TDELQDAIDEANPAEIANTSQQLRHARADLADLQRRFA 79 (90)
T ss_dssp HHHHHHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHHHHHHHccCHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 368999966 55666665543 33345555556666667777777764
No 18
>2fzt_A Hypothetical protein TM0693; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.05A {Thermotoga maritima} SCOP: a.46.3.1 PDB: 2g42_A
Probab=53.38 E-value=25 Score=22.76 Aligned_cols=49 Identities=16% Similarity=0.470 Sum_probs=31.8
Q ss_pred ChHHHHHHHhhhhhHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHh
Q psy2907 30 ANFEQLMVTMFDEKDKLLDNLRETQDRL--SETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 30 ~nfEQLMvnMLdERDKLletLretQe~L--~~~q~rL~eve~Erd~LqrQl~ 79 (88)
-+|| ...+.|+.|.+|+..|-+-.-+. .--..|+..+.+-..+|++|..
T Consensus 18 edyE-~L~~LL~kREkLlk~L~~e~l~~i~EkDk~R~~~Ik~~~~~L~q~a~ 68 (79)
T 2fzt_A 18 EDYE-TLLSLLNKRKELMEGLPKDKLSEILEKDRKRLEIIEKRKTALFQEIN 68 (79)
T ss_dssp TCHH-HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHH-HHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3454 45789999999998775543333 3334556666666677777654
No 19
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=52.63 E-value=45 Score=21.95 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=22.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy2907 39 MFDEKDKLLDNLRETQDRLSETSGKLSMVEKERD 72 (88)
Q Consensus 39 MLdERDKLletLretQe~L~~~q~rL~eve~Erd 72 (88)
=++||+.|++..-.+..-+...+.++.+..+.-+
T Consensus 2 ~~~e~~~~~~~~~~~e~e~~~l~~~~~el~~~l~ 35 (125)
T 1joc_A 2 NQDERRALLERCLKGEGEIEKLQTKVLELQRKLD 35 (125)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3689999998877777666666665555444333
No 20
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=50.84 E-value=55 Score=22.20 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=11.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Q psy2907 53 TQDRLSETSGKLSMVEKERDSLQRQ 77 (88)
Q Consensus 53 tQe~L~~~q~rL~eve~Erd~LqrQ 77 (88)
....|..++.++.++.++...|++.
T Consensus 94 lK~el~~~~~k~e~~~~e~~~l~~~ 118 (138)
T 3hnw_A 94 LKHELIAAQIKAESSAKEIKELKSE 118 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 21
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=48.49 E-value=50 Score=22.15 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy2907 42 EKDKLLDNLRETQDRLSETSGKLSMVEKERDSL 74 (88)
Q Consensus 42 ERDKLletLretQe~L~~~q~rL~eve~Erd~L 74 (88)
|--..-..+.+.+..+.........+++|||..
T Consensus 12 eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFY 44 (106)
T 4e61_A 12 ELTKSQETIGSLNEEIEQYKGTVSTLEIEREFY 44 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455566666666667777889999853
No 22
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=48.35 E-value=34 Score=20.70 Aligned_cols=31 Identities=19% Similarity=0.225 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy2907 47 LDNLRETQDRLSETSGKLSMVEKERDSLQRQ 77 (88)
Q Consensus 47 letLretQe~L~~~q~rL~eve~Erd~LqrQ 77 (88)
.++|+.+-+=+...+.++++.+.+.+.|++|
T Consensus 49 ~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 49 AQILDKATEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678888888888888888888888888875
No 23
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=48.12 E-value=51 Score=25.47 Aligned_cols=41 Identities=15% Similarity=0.091 Sum_probs=21.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy2907 36 MVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQR 76 (88)
Q Consensus 36 MvnMLdERDKLletLretQe~L~~~q~rL~eve~Erd~Lqr 76 (88)
+-+|++|-.||-..+.....++...+..|+.....-+.|+.
T Consensus 7 ~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~ 47 (323)
T 1lwu_C 7 VQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQ 47 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677777776555554444555555544444444444443
No 24
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=45.91 E-value=55 Score=20.71 Aligned_cols=48 Identities=15% Similarity=0.315 Sum_probs=38.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 32 FEQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 32 fEQLMvnMLdERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
|.-=|-+|=.+.|..++-....+..+-.+..+...++.+-.+|++.+.
T Consensus 7 iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq 54 (101)
T 3u59_A 7 IKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLK 54 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 444577777888888888888888888888888888888888887553
No 25
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=45.18 E-value=60 Score=24.63 Aligned_cols=39 Identities=18% Similarity=0.195 Sum_probs=23.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy2907 40 FDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQI 78 (88)
Q Consensus 40 LdERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl 78 (88)
.+|.+|+-.-+++....++.+..+++++-.....|..|+
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (487)
T 3oja_A 448 AEENARLKKLNGEADLALASANATLQELVVREQNLASQL 486 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHHHhc
Confidence 355555555566666666666666666655555555554
No 26
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=43.62 E-value=53 Score=23.34 Aligned_cols=35 Identities=26% Similarity=0.172 Sum_probs=20.6
Q ss_pred hhhHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHH
Q psy2907 41 DEKDKLLDNLRE----TQDRLSETSGKLSMVEKERDSLQ 75 (88)
Q Consensus 41 dERDKLletLre----tQe~L~~~q~rL~eve~Erd~Lq 75 (88)
.++.|+++.|+. .|-++...+.|++.+++|.+.|-
T Consensus 92 ~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV 130 (152)
T 3a7p_A 92 ALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLV 130 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455565555543 44555566666777777765553
No 27
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=43.50 E-value=70 Score=21.42 Aligned_cols=50 Identities=22% Similarity=0.272 Sum_probs=35.8
Q ss_pred ChHHHHHHHhh----------hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 30 ANFEQLMVTMF----------DEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 30 ~nfEQLMvnML----------dERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
..|.--||+-= =+=|-|-|.|.|-.++++..+-.+.|--++.+.++|..+
T Consensus 9 EKyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~ 68 (103)
T 4h22_A 9 EKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHS 68 (103)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666532 234667788899999999999888887777777776544
No 28
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=43.46 E-value=58 Score=20.32 Aligned_cols=33 Identities=24% Similarity=0.538 Sum_probs=19.1
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhH
Q psy2907 31 NFEQLMVTMFDEKDKLLDNLRETQDRLSETSGK 63 (88)
Q Consensus 31 nfEQLMvnMLdERDKLletLretQe~L~~~q~r 63 (88)
.+|.-++.++.|+..|..+|.++.++......+
T Consensus 39 ele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~ 71 (89)
T 3bas_A 39 ELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSK 71 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 345557777777777777754444444443333
No 29
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=42.61 E-value=41 Score=19.74 Aligned_cols=29 Identities=17% Similarity=0.378 Sum_probs=18.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHhHHHH
Q psy2907 38 TMFDEKDKLLDNLRETQDRLSETSGKLSM 66 (88)
Q Consensus 38 nMLdERDKLletLretQe~L~~~q~rL~e 66 (88)
.+=.-..||.++|+++.+.|......+..
T Consensus 20 ~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 20 SLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345667778888777777766555543
No 30
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=42.35 E-value=92 Score=24.21 Aligned_cols=50 Identities=16% Similarity=0.276 Sum_probs=41.9
Q ss_pred ChHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 30 ANFEQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 30 ~nfEQLMvnMLdERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
...++-+.++-.+..+|-+.+.+.+..+...+.++.+-+..|..|.-++.
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~ 55 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQ 55 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555577788889999999999999999999999999999988877664
No 31
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=40.89 E-value=51 Score=22.14 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Q psy2907 48 DNLRETQDRLSETSGKLSMVEKERDSLQRQIAAS 81 (88)
Q Consensus 48 etLretQe~L~~~q~rL~eve~Erd~LqrQl~~~ 81 (88)
..+++.++.+..+...++++-++.+.|..++...
T Consensus 92 ~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 125 (132)
T 1ykh_B 92 RKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSM 125 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777888888888888777643
No 32
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=39.65 E-value=88 Score=21.78 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=10.8
Q ss_pred hhhhhHHHHHHHHHH-HHHHHHH
Q psy2907 39 MFDEKDKLLDNLRET-QDRLSET 60 (88)
Q Consensus 39 MLdERDKLletLret-Qe~L~~~ 60 (88)
-|.+.+||+..|.++ .+.|..|
T Consensus 13 ~L~~~e~l~~el~~tWeeKl~~t 35 (184)
T 4egx_A 13 RLKETEKIIAELNETWEEKLRRT 35 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Confidence 344555555555544 4444443
No 33
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=39.26 E-value=73 Score=20.29 Aligned_cols=46 Identities=15% Similarity=0.242 Sum_probs=33.9
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy2907 33 EQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQI 78 (88)
Q Consensus 33 EQLMvnMLdERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl 78 (88)
.-=|-+|=.+.|..++-....+..+-.+..+...++.|-.+|++.+
T Consensus 8 KkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~ 53 (101)
T 3u1c_A 8 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQL 53 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3336666678888888888888888777777777777777777644
No 34
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=38.72 E-value=44 Score=17.53 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHH
Q psy2907 44 DKLLDNLRETQDRLSETSGKLS 65 (88)
Q Consensus 44 DKLletLretQe~L~~~q~rL~ 65 (88)
|.|..-|...|++|.....||.
T Consensus 4 delykeledlqerlrklrkklr 25 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 5677777777887776665553
No 35
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=38.52 E-value=56 Score=22.61 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Q psy2907 47 LDNLRETQDRLSETSGKLSMVEKERDSLQRQIAAS 81 (88)
Q Consensus 47 letLretQe~L~~~q~rL~eve~Erd~LqrQl~~~ 81 (88)
+..+++.++.+..+...++++-+|.+.|..++...
T Consensus 91 ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~ 125 (151)
T 1yke_B 91 LRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSL 125 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777788888888888888888877653
No 36
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=38.24 E-value=16 Score=28.34 Aligned_cols=16 Identities=25% Similarity=0.671 Sum_probs=13.6
Q ss_pred HhhhhhHHHHHHHHHH
Q psy2907 38 TMFDEKDKLLDNLRET 53 (88)
Q Consensus 38 nMLdERDKLletLret 53 (88)
.+||+||+|++.|-+.
T Consensus 133 dLlDqRD~ll~eLS~~ 148 (463)
T 2d4y_A 133 DLLDQRDQLVSELNKI 148 (463)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhh
Confidence 4789999999999763
No 37
>3f5h_A Type I polyketide synthase PIKAIII, type I polyketide synthase pikaiv fusion protein...; docking domain, pikromycin, H2-T2; 1.75A {Streptomyces venezuelae}
Probab=37.88 E-value=69 Score=19.79 Aligned_cols=29 Identities=17% Similarity=0.223 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy2907 42 EKDKLLDNLRETQDRLSETSGKLSMVEKE 70 (88)
Q Consensus 42 ERDKLletLretQe~L~~~q~rL~eve~E 70 (88)
.=+||.+-|+.....|..++.++++++..
T Consensus 35 ~eekLrdyLrrvtadL~~aR~rLrelEaa 63 (68)
T 3f5h_A 35 SNEQLVDALRASLKENEELRKESRRRADR 63 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45799999999999999999999988754
No 38
>3m1f_V VOPL, putative uncharacterized protein VPA1370; actin, actin-binding protein, crosslinking, nucleator, prote protein interaction; HET: HIC ATP; 2.89A {Oryctolagus cuniculus}
Probab=37.51 E-value=16 Score=19.94 Aligned_cols=12 Identities=25% Similarity=0.808 Sum_probs=9.8
Q ss_pred hhhHHHHHHHHH
Q psy2907 41 DEKDKLLDNLRE 52 (88)
Q Consensus 41 dERDKLletLre 52 (88)
+.|-||||.+|.
T Consensus 4 edrSKLMEqIRq 15 (31)
T 3m1f_V 4 EDHSKLMEQIRQ 15 (31)
T ss_dssp TTHHHHHHHHHH
T ss_pred hhHHHHHHHHHh
Confidence 578999998874
No 39
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=36.91 E-value=63 Score=23.17 Aligned_cols=31 Identities=26% Similarity=0.162 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 49 NLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 49 tLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
.+||.|+.+...+..-..++++...||.+|.
T Consensus 49 ~~rELq~~~~~L~~~k~~Leke~~~LQa~L~ 79 (168)
T 3o0z_A 49 LNRELQERNRILENSKSQTDKDYYQLQAILE 79 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555554
No 40
>3etv_A Protein transport protein TIP20,linker,protein transport protein DSL1; TIP20P-DSL1P complex, endoplasmic reticulum, ER-golgi transport; 1.94A {Saccharomyces cerevisiae} PDB: 3etu_A
Probab=35.52 E-value=21 Score=28.62 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=18.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhh
Q psy2907 58 SETSGKLSMVEKERDSLQRQIAA 80 (88)
Q Consensus 58 ~~~q~rL~eve~Erd~LqrQl~~ 80 (88)
-.-..|.+++++|||.|.+||..
T Consensus 12 l~id~~I~~i~~eRd~La~~lq~ 34 (355)
T 3etv_A 12 LNINDRIKQVQNERNELASKLQN 34 (355)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999998864
No 41
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=35.52 E-value=1.1e+02 Score=21.64 Aligned_cols=50 Identities=8% Similarity=0.260 Sum_probs=36.8
Q ss_pred cChHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy2907 29 DANFEQLMVTM--FDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQI 78 (88)
Q Consensus 29 ~~nfEQLMvnM--LdERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl 78 (88)
...|..+-+.. |+|-.|+.+.|..........+.+++.++.-|++|-.++
T Consensus 365 ~~~l~~~~i~lPpl~eQ~~I~~~l~~ld~~i~~~~~~~~~l~~~k~~Ll~~l 416 (425)
T 1yf2_A 365 KSMLENFKIPLPPLEEQKQIAKILSSVDKSIELKKQKKEKLQRMKKKIMELL 416 (425)
T ss_dssp HHHHHHCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555553332 688999998888888888888888888888888876544
No 42
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=35.49 E-value=39 Score=23.80 Aligned_cols=32 Identities=19% Similarity=0.182 Sum_probs=26.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhcCCCCC
Q psy2907 55 DRLSETSGKLSMVEKERDSLQRQIAASLPQVG 86 (88)
Q Consensus 55 e~L~~~q~rL~eve~Erd~LqrQl~~~lPqef 86 (88)
........+++++|++=|.+.+.+-..||+.|
T Consensus 56 ~~~~~~~~~I~~lE~~aD~i~~~i~~~L~~~f 87 (227)
T 3l39_A 56 TERADYYKQIKDMEREGDRLTHLIFDELSTTF 87 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45666778899999999999999888777655
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=35.48 E-value=1.5e+02 Score=22.76 Aligned_cols=14 Identities=29% Similarity=0.361 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q psy2907 64 LSMVEKERDSLQRQ 77 (88)
Q Consensus 64 L~eve~Erd~LqrQ 77 (88)
++.+++|++.+.++
T Consensus 539 ~~~~~~~~~~le~~ 552 (597)
T 3oja_B 539 TEDLEQENIALEKQ 552 (597)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhHHhhhHHHHHH
Confidence 33444455544443
No 44
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=35.29 E-value=1.2e+02 Score=23.66 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=39.3
Q ss_pred ChHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 30 ANFEQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 30 ~nfEQLMvnMLdERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
..++.-....-+...+|.....+.+..+.....+|.+.+.+|-.|.-++.
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~ 55 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVM 55 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777888888888888888888888888888888877776654
No 45
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=34.25 E-value=93 Score=21.66 Aligned_cols=31 Identities=26% Similarity=0.397 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHH----hHHHHHHHHH
Q psy2907 41 DEKDKLLDNLRETQDRLSETS----GKLSMVEKER 71 (88)
Q Consensus 41 dERDKLletLretQe~L~~~q----~rL~eve~Er 71 (88)
+..+.|.|.|.+++..+.+.+ .||++.+.-+
T Consensus 5 ~~~ee~~e~L~~~e~l~~el~~tWeeKl~~te~~~ 39 (184)
T 4egx_A 5 EFSEEAIERLKETEKIIAELNETWEEKLRRTEAIR 39 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 345678899999998888875 5676554433
No 46
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=34.03 E-value=99 Score=20.69 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=15.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Q psy2907 54 QDRLSETSGKLSMVEKERDSLQRQ 77 (88)
Q Consensus 54 Qe~L~~~q~rL~eve~Erd~LqrQ 77 (88)
+..-...+.++.++|...|.|-|+
T Consensus 48 r~~~~~l~~~iReLEq~NDDLER~ 71 (111)
T 2v66_B 48 RAIKEQLHKYVRELEQANDDLERA 71 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhchHHHHH
Confidence 333344466777888888888775
No 47
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=33.80 E-value=1e+02 Score=22.86 Aligned_cols=28 Identities=32% Similarity=0.427 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 52 ETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 52 etQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
..+..|...+.+|+...-|++|++.|+.
T Consensus 175 ~lK~kl~~l~~~L~~~~~e~~s~~~~~~ 202 (228)
T 3q0x_A 175 EVKGTCHDLSDDLSRTRDDRDSMVAQLA 202 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555554443
No 48
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=31.51 E-value=1.1e+02 Score=19.84 Aligned_cols=39 Identities=15% Similarity=0.279 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 41 DEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 41 dERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
++++.|=......+..+......+..+.+|+|.++..+.
T Consensus 48 ~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555666666666666667788888888887665
No 49
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=31.45 E-value=1e+02 Score=19.54 Aligned_cols=52 Identities=15% Similarity=0.173 Sum_probs=36.9
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcC
Q psy2907 31 NFEQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIAASL 82 (88)
Q Consensus 31 nfEQLMvnMLdERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~~~l 82 (88)
.|+.|.-===.+.|..-..|-..+..+...+.+|..+...++....++....
T Consensus 9 ~L~~ll~l~~~~ed~a~~~l~~a~~~~~~~~~~L~~L~~~~~~y~~~~~~~~ 60 (150)
T 3ajw_A 9 ALETLKDLAEKEVDDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRSNLNTDM 60 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--C
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443333566677777888889999999999999999988877766443
No 50
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=31.16 E-value=79 Score=18.74 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=18.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 54 QDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 54 Qe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
++.+...+.++.+++.++..|..+++
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~ 54 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVA 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777888888877665
No 51
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=30.85 E-value=76 Score=31.67 Aligned_cols=35 Identities=17% Similarity=0.232 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 45 KLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 45 KLletLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
++-+.|.++++.|...+.+|++++.+-..|+.+++
T Consensus 2018 ~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~ 2052 (3245)
T 3vkg_A 2018 QLENAANELKLKQDEIVATITALEKSIATYKEEYA 2052 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666666666554
No 52
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=29.34 E-value=1.1e+02 Score=23.92 Aligned_cols=39 Identities=13% Similarity=0.054 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 41 DEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 41 dERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
.||+-|=+.|++.++.+...+.+.++...+...+..||.
T Consensus 3 ~~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 41 (412)
T 3u06_A 3 SMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLF 41 (412)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477778888888888888877777777777776666554
No 53
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=28.49 E-value=1.1e+02 Score=18.92 Aligned_cols=46 Identities=17% Similarity=0.351 Sum_probs=17.9
Q ss_pred CCCcChHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy2907 26 SGEDANFEQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSL 74 (88)
Q Consensus 26 ~~~~~nfEQLMvnMLdERDKLletLretQe~L~~~q~rL~eve~Erd~L 74 (88)
.|+.+..++-+..+|..+|-++.-| +.+|.......+++..+-|.+
T Consensus 6 ~~~~~~~~e~~~~~i~~Kde~I~eL---E~~L~~kd~eI~eLr~~LdK~ 51 (67)
T 1zxa_A 6 PGSTSELEEDFAKILMLKEERIKEL---EKRLSEKEEEIQELKRKLHKC 51 (67)
T ss_dssp -----------CHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHccHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777778887777665544 233444444444444333333
No 54
>2l2l_A Transcriptional repressor P66-alpha; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=27.97 E-value=34 Score=19.89 Aligned_cols=24 Identities=25% Similarity=0.616 Sum_probs=15.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHH
Q psy2907 41 DEKDKLLDNLRETQDRLSETSGKLSMV 67 (88)
Q Consensus 41 dERDKLletLretQe~L~~~q~rL~ev 67 (88)
+||++++..||| -|-.-..||-=+
T Consensus 4 ~ere~~i~~Lre---eLR~EEaKLvLL 27 (43)
T 2l2l_A 4 EERERMIKQLKE---ELRLEEAKLVLL 27 (43)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 689999988876 344444554333
No 55
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=27.22 E-value=1.2e+02 Score=18.95 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhH
Q psy2907 43 KDKLLDNLRETQDRLSETSGK 63 (88)
Q Consensus 43 RDKLletLretQe~L~~~q~r 63 (88)
+.-|=++++..+.+|..++.+
T Consensus 16 N~~Le~~v~~le~~Le~s~~~ 36 (72)
T 3cve_A 16 NKDLEGQLSEMEQRLEKSQSE 36 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555544
No 56
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=27.17 E-value=1.5e+02 Score=26.07 Aligned_cols=18 Identities=11% Similarity=0.148 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHh
Q psy2907 62 GKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 62 ~rL~eve~Erd~LqrQl~ 79 (88)
.++..+++|...|+.|++
T Consensus 1023 ~kv~~L~~e~~~L~qq~~ 1040 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKE 1040 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556667777777777665
No 57
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Probab=27.13 E-value=76 Score=24.04 Aligned_cols=41 Identities=17% Similarity=0.310 Sum_probs=32.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHh
Q psy2907 39 MFDEKDKLLDNLRETQDRLSETSGK-LSMVEKERDSLQRQIA 79 (88)
Q Consensus 39 MLdERDKLletLretQe~L~~~q~r-L~eve~Erd~LqrQl~ 79 (88)
.+++|-+|-+.-..-|+.|-..+.. |..++.|+-.|+-++.
T Consensus 179 ~veerkrl~~kQ~k~qEkL~~~h~e~le~l~~e~~k~~~~~~ 220 (251)
T 1jad_A 179 VVQTIKLLTEKTARYQQKLEEKQAENLRAIQEKEGQLQQEAV 220 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 4578888888888888888888777 7788888888888777
No 58
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=27.06 E-value=1.8e+02 Score=20.99 Aligned_cols=39 Identities=21% Similarity=0.237 Sum_probs=29.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy2907 40 FDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQI 78 (88)
Q Consensus 40 LdERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl 78 (88)
++|-.++.+.|......+...+.+++.++.-|++|-.++
T Consensus 354 l~eQ~~I~~~l~~id~~i~~~~~~i~~L~~lk~~LL~~l 392 (406)
T 1ydx_A 354 FQLQRKAGKIVFLLDQKLDQYKKELSSLTVIRDTLLKKL 392 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888777777777777877877787776543
No 59
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=27.04 E-value=1.2e+02 Score=19.13 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhH
Q psy2907 42 EKDKLLDNLRETQDRLSETSGK 63 (88)
Q Consensus 42 ERDKLletLretQe~L~~~q~r 63 (88)
++.-|=++++..+.+|..++.+
T Consensus 21 rN~~Le~~v~~le~~Le~s~~~ 42 (79)
T 3cvf_A 21 RNAELEHQLRAMERSLEEARAE 42 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555544
No 60
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=26.76 E-value=82 Score=24.95 Aligned_cols=38 Identities=24% Similarity=0.356 Sum_probs=23.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy2907 41 DEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQI 78 (88)
Q Consensus 41 dERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl 78 (88)
++++.|++..++..+.+.....++++++.+.+.+...|
T Consensus 69 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 106 (455)
T 2dq0_A 69 EPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRL 106 (455)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34556666666666666666666666666665554433
No 61
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=26.30 E-value=1.1e+02 Score=23.82 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy2907 42 EKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQR 76 (88)
Q Consensus 42 ERDKLletLretQe~L~~~q~rL~eve~Erd~Lqr 76 (88)
+.+.|.+..++..+.+.....++++++.+.+.+..
T Consensus 65 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (421)
T 1ses_A 65 EKEALIARGKALGEEAKRLEEALREKEARLEALLL 99 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555556666555554443
No 62
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=25.98 E-value=98 Score=20.95 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy2907 44 DKLLDNLRETQDRLSETSGKLSMVEK 69 (88)
Q Consensus 44 DKLletLretQe~L~~~q~rL~eve~ 69 (88)
.+|.+-+...--+|..+++||++.++
T Consensus 38 eeLQ~Ei~~~E~QL~iArQKLkdAe~ 63 (107)
T 2k48_A 38 QELQENITAHEQQLVTARQKLKDAEK 63 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888899999999985543
No 63
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=25.93 E-value=97 Score=21.14 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Q psy2907 45 KLLDNLRETQDRLSETSGKLSMVE 68 (88)
Q Consensus 45 KLletLretQe~L~~~q~rL~eve 68 (88)
+|.+-+...--+|..++.||++.+
T Consensus 26 eLq~Ei~~~E~QL~~ArQKLkdA~ 49 (113)
T 4fi5_A 26 ELQREINAHEGQLVIARQKVRDAE 49 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777888888877443
No 64
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=25.93 E-value=1e+02 Score=20.32 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=19.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 53 TQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 53 tQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
|-+.+.....++..++.|++.|.+.++
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~ 36 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKR 36 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777788888888888887654
No 65
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=25.65 E-value=1.6e+02 Score=20.02 Aligned_cols=57 Identities=26% Similarity=0.351 Sum_probs=37.5
Q ss_pred ChHHHHHHHhhhhhHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHhhcCCCCC
Q psy2907 30 ANFEQLMVTMFDEKDKLLDNLRET----QDRLSETSGKLSMVEKERDSLQRQIAASLPQVG 86 (88)
Q Consensus 30 ~nfEQLMvnMLdERDKLletLret----Qe~L~~~q~rL~eve~Erd~LqrQl~~~lPqef 86 (88)
.-|.+...+..+-=..|.+.+..+ -........++.+.||+=|.+.+.+-..||..|
T Consensus 17 ~~l~~~a~~~~~~a~~L~~~~~~~~~~d~~~~~~~~~~i~~~E~~aD~l~~~I~~~L~~~~ 77 (227)
T 2olt_A 17 KPLQEHMDKVYDCASLLVPFFEATITGNWDDAVQIRKQISLAEKQGDSLKREIRLTLPSGL 77 (227)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 346666555555444444444431 233445667899999999999999988888655
No 66
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=24.50 E-value=1.2e+02 Score=19.36 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH
Q psy2907 44 DKLLDNLRETQDRLSETSGKLSMVE 68 (88)
Q Consensus 44 DKLletLretQe~L~~~q~rL~eve 68 (88)
.+|.+-+...--+|..++.||++.+
T Consensus 8 ~eLq~e~~~~E~QL~~A~QKLkdA~ 32 (78)
T 2ic6_A 8 KEVQDNITLHEQRLVTTRQKLKDAE 32 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777888888999988544
No 67
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=23.85 E-value=1.9e+02 Score=23.02 Aligned_cols=42 Identities=7% Similarity=0.145 Sum_probs=23.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy2907 36 MVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQ 77 (88)
Q Consensus 36 MvnMLdERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQ 77 (88)
--+|+++..+|-..+.....++...+..+......-+.|+.+
T Consensus 86 skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~ 127 (409)
T 1m1j_C 86 SKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQK 127 (409)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 346888888876655555555555555555444444444443
No 68
>3sl9_C B-cell CLL/lymphoma 9 protein; armadillo repeat, components of the WNT signaling pathway, B catenin, signaling protein, protein binding; 2.20A {Homo sapiens} PDB: 2gl7_C
Probab=23.73 E-value=70 Score=19.23 Aligned_cols=18 Identities=28% Similarity=0.593 Sum_probs=15.6
Q ss_pred hhhhHHHHHHHHHHHHHH
Q psy2907 40 FDEKDKLLDNLRETQDRL 57 (88)
Q Consensus 40 LdERDKLletLretQe~L 57 (88)
|+-|.|-|.+||..|.-|
T Consensus 15 lehrerslqtlrdi~r~~ 32 (55)
T 3sl9_C 15 LEHRERSLQTLRDIQRML 32 (55)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 588999999999988765
No 69
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=23.70 E-value=1.3e+02 Score=18.23 Aligned_cols=26 Identities=8% Similarity=0.230 Sum_probs=12.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 54 QDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 54 Qe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
..++...+.+++.+...+..+.++++
T Consensus 7 i~~f~~lq~~~~~l~~q~~~l~~~~~ 32 (107)
T 1fxk_A 7 LAQFQQLQQQAQAISVQKQTVEMQIN 32 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 70
>2wl8_A Peroxisomal biogenesis factor 19; protein transport, biogenesis disorder, zellweger syndrome, membrane, prenylation; 2.05A {Homo sapiens}
Probab=23.57 E-value=1.2e+02 Score=20.67 Aligned_cols=43 Identities=23% Similarity=0.395 Sum_probs=28.2
Q ss_pred cChHHHHHHHhhh---hhHHHHHHHHHHHHH----HHHHHhHHHHHHHHH
Q psy2907 29 DANFEQLMVTMFD---EKDKLLDNLRETQDR----LSETSGKLSMVEKER 71 (88)
Q Consensus 29 ~~nfEQLMvnMLd---ERDKLletLretQe~----L~~~q~rL~eve~Er 71 (88)
+.+|..+|.+|+. -+|-|++.+.|..+. |.....+|..-.++|
T Consensus 11 ~~~~~~~~~~mMqqL~SKevLYepmKel~~kyP~WLe~nk~~l~~Ed~~R 60 (126)
T 2wl8_A 11 EGNILPIMQSIMQNLLSKDVLYPSLKEITEKYPEWLQSHRESLPPEQFEK 60 (126)
T ss_dssp ---CHHHHHHHHHHHTSHHHHHHHHHHHHTTHHHHHHHHGGGSCHHHHHH
T ss_pred chhHHHHHHHHHHHHhhHHhhhccHHHHHHHhhHHHHhCcccCCHHHHHH
Confidence 4578888888874 589999999988876 455556554444443
No 71
>3emo_C HIA (adhesin); transmembrane, outer membrane, trimeric autotransporter, membrane protein/cell adhesion complex; 3.00A {Haemophilus influenzae}
Probab=23.45 E-value=1.9e+02 Score=20.13 Aligned_cols=10 Identities=30% Similarity=0.195 Sum_probs=7.2
Q ss_pred CCcChHHHHH
Q psy2907 27 GEDANFEQLM 36 (88)
Q Consensus 27 ~~~~nfEQLM 36 (88)
.+..|.-||-
T Consensus 52 tDAvN~~Ql~ 61 (162)
T 3emo_C 52 TDAINGSQLY 61 (162)
T ss_dssp CCBCBHHHHH
T ss_pred CccccHHHHh
Confidence 4557999983
No 72
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=23.20 E-value=2e+02 Score=20.25 Aligned_cols=49 Identities=8% Similarity=0.283 Sum_probs=32.7
Q ss_pred ChHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy2907 30 ANFEQLMVTM--FDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQI 78 (88)
Q Consensus 30 ~nfEQLMvnM--LdERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl 78 (88)
..|..+-+-. |+|-.|+.+.|...-+..+..+.+++.++.-|.+|-.++
T Consensus 156 ~~l~~~~i~lPpl~EQ~~I~~~l~~ld~~i~~~~~~i~~l~~~k~~l~~~~ 206 (425)
T 1yf2_A 156 QIVKSFKIPLPPLEEQKQIAKILTKIDEGIEIIEKSINKLERIKKGLMHKL 206 (425)
T ss_dssp HHHHTCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443322 688888888888777777777777777777777765543
No 73
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=23.09 E-value=1.2e+02 Score=17.73 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=14.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 56 RLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 56 ~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
.....+.+.++++.+++.|..+++
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~ 47 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERAD 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666554
No 74
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=22.58 E-value=1.8e+02 Score=19.42 Aligned_cols=36 Identities=17% Similarity=0.307 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Q psy2907 46 LLDNLRETQDRLSETSGKLSMVEKERDSLQRQIAAS 81 (88)
Q Consensus 46 LletLretQe~L~~~q~rL~eve~Erd~LqrQl~~~ 81 (88)
|.++|..-+-+-..-+.|.+|.+-|-..|+.+|..+
T Consensus 51 L~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda 86 (99)
T 3ni0_A 51 LQESLEKKVSQALEQQARIKELENEVTKLNQELENL 86 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344454444443344556677777777777666543
No 75
>1u7k_A GAG polyprotein; capsid, viral protein; 1.85A {Endogenous} SCOP: a.73.1.1 PDB: 2y4z_A 3bp9_A
Probab=22.45 E-value=71 Score=22.22 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=17.5
Q ss_pred ChHHHHHHHhh--hhhHHHHHHHHHH
Q psy2907 30 ANFEQLMVTMF--DEKDKLLDNLRET 53 (88)
Q Consensus 30 ~nfEQLMvnML--dERDKLletLret 53 (88)
..+.|||.+.| +||.+++...|..
T Consensus 53 ~D~qqLL~tLlT~EEr~ril~eArk~ 78 (131)
T 1u7k_A 53 DDCQQLLGTLLTGEEKQRVLLEARKA 78 (131)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 34567777777 8999988777743
No 76
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=22.33 E-value=1.4e+02 Score=24.07 Aligned_cols=29 Identities=21% Similarity=0.086 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy2907 45 KLLDNLRETQDRLSETSGKLSMVEKERDS 73 (88)
Q Consensus 45 KLletLretQe~L~~~q~rL~eve~Erd~ 73 (88)
.|.+..++..+.+.....++++++.+.+.
T Consensus 120 ~l~~~~~~l~~~i~~l~~~~~~~~~~l~~ 148 (501)
T 1wle_A 120 SLRARGREIRKQLTLLYPKEAQLEEQFYL 148 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444443
No 77
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=22.13 E-value=2.6e+02 Score=21.08 Aligned_cols=13 Identities=8% Similarity=0.015 Sum_probs=7.9
Q ss_pred CcChHHHHHHHhh
Q psy2907 28 EDANFEQLMVTMF 40 (88)
Q Consensus 28 ~~~nfEQLMvnML 40 (88)
+.+=|++|+-++=
T Consensus 221 ~~~yf~~l~~~~~ 233 (426)
T 1lrz_A 221 DDKFYYNRLKYYK 233 (426)
T ss_dssp CHHHHHHHHHHHG
T ss_pred CHHHHHHHHHHhc
Confidence 4456777765553
No 78
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=21.69 E-value=1.5e+02 Score=18.16 Aligned_cols=29 Identities=17% Similarity=0.154 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy2907 48 DNLRETQDRLSETSGKLSMVEKERDSLQR 76 (88)
Q Consensus 48 etLretQe~L~~~q~rL~eve~Erd~Lqr 76 (88)
++|..+.+-+...+.+-+....|.+.|++
T Consensus 40 ~iL~kA~~yI~~L~~~~~~l~~e~~~L~~ 68 (80)
T 1nlw_A 40 SLLTKAKLHIKKLEDSDRKAVHQIDQLQR 68 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444
No 79
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=21.21 E-value=1.3e+02 Score=17.30 Aligned_cols=26 Identities=8% Similarity=0.358 Sum_probs=20.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 54 QDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 54 Qe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
+.-+...+.++..++.|...|..++.
T Consensus 21 k~~~~~LE~~v~~L~~eN~~L~~~~~ 46 (55)
T 1dh3_A 21 KEYVKSLENRVAVLENQNKTLIEELK 46 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777788889999999998876
No 80
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=21.09 E-value=1.2e+02 Score=16.93 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 44 DKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 44 DKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
+.+-..+.+++..+..+-..|..+-.+-..++.|+.
T Consensus 22 ~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 22 SLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555566666655555555555555555554
No 81
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=20.96 E-value=1.6e+02 Score=18.35 Aligned_cols=44 Identities=20% Similarity=0.368 Sum_probs=29.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 36 MVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 36 MvnMLdERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
+-++-.|.+-|...|++.|+.+......-.++...+.++..+|+
T Consensus 6 v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~L~ 49 (71)
T 1uix_A 6 VANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQLL 49 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667889999999999999888755322222233446666655
No 82
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=20.78 E-value=1.5e+02 Score=17.95 Aligned_cols=33 Identities=18% Similarity=0.133 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907 47 LDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79 (88)
Q Consensus 47 letLretQe~L~~~q~rL~eve~Erd~LqrQl~ 79 (88)
..+|..+-+=+...+...+.++.|...|+..+.
T Consensus 42 a~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 42 SAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666777777777777778888888877654
No 83
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A
Probab=20.20 E-value=1.6e+02 Score=18.13 Aligned_cols=36 Identities=25% Similarity=0.408 Sum_probs=23.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHH
Q psy2907 41 DEKDKLLDNLRETQDRLSETS-GKLSMVEKERDSLQR 76 (88)
Q Consensus 41 dERDKLletLretQe~L~~~q-~rL~eve~Erd~Lqr 76 (88)
++|.++.+.+.++.+-|.... ....++.+..+.|+.
T Consensus 37 eek~~i~~~i~e~~~wL~~~~~a~~e~i~~k~~eL~~ 73 (113)
T 3lof_A 37 ADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQ 73 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHH
Confidence 578888999999988887642 123444444554543
No 84
>3m6z_A Topoisomerase V; helix-hairpin-helix, conformational changes I protein; HET: PO4; 1.40A {Methanopyrus kandleri} PDB: 3m6k_A* 3m7d_A 3m7g_A
Probab=20.02 E-value=1.3e+02 Score=23.54 Aligned_cols=50 Identities=28% Similarity=0.484 Sum_probs=35.9
Q ss_pred ChHHHHHHHh----------hhhhHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHh
Q psy2907 30 ANFEQLMVTM----------FDEKDKLLDNLRETQDRLSETSGK-----LSMVEKERDSLQRQIA 79 (88)
Q Consensus 30 ~nfEQLMvnM----------LdERDKLletLretQe~L~~~q~r-----L~eve~Erd~LqrQl~ 79 (88)
+-+-...||. ...||+|+|.|-|.-+.|.+--.| -=-|+|.||.+.|-|.
T Consensus 227 slwsrvvvnieydertakrhvkrrdrlleelyehleelserylrhpltrrwivehkrdimrryle 291 (380)
T 3m6z_A 227 SLWSRVVVNIEYDERTAKRHVKRRDRLLEELYEHLEELSERYLRHPLTRRWIVEHKRDIMRRYLE 291 (380)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCHHHHHHTHHHHHHHHHH
T ss_pred HhhhhheEeeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH
Confidence 3444556665 356899999999888887765443 2268999999988665
Done!