RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2907
(88 letters)
>gnl|CDD|224310 COG1392, COG1392, Phosphate transport regulator (distant homolog of
PhoU) [Inorganic ion transport and metabolism].
Length = 217
Score = 30.7 bits (70), Expect = 0.059
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 45 KLLDNLRETQDRLSETSGKLSMVEKERDSLQRQI 78
+LL++L E+ DRL E ++ +E E D +QR++
Sbjct: 137 ELLEDLLESADRLLEIIKEIEALEHECDDIQREL 170
>gnl|CDD|221401 pfam12061, DUF3542, Protein of unknown function (DUF3542). This
family of proteins is functionally uncharacterized. This
protein is found in eukaryotes and viruses. Proteins in
this family are typically between 516 to 1283 amino
acids in length. This protein is found associated with
pfam00931.
Length = 403
Score = 29.5 bits (66), Expect = 0.18
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Query: 44 DKLLDNLRETQDRLSET----SGKLSMVEKERDSLQ 75
D LL NL++ QDR S++ +L +++ E +SLQ
Sbjct: 300 DFLLKNLKDFQDRYSDSLAFLKSQLQVIQTELESLQ 335
>gnl|CDD|215230 PLN02418, PLN02418, delta-1-pyrroline-5-carboxylate synthase.
Length = 718
Score = 28.9 bits (65), Expect = 0.26
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 23 SLFSGEDANFEQLMVTMFDEKDK-LLDNLRETQDRL 57
+LFS D QL+VT D +D L ET + L
Sbjct: 110 TLFSQLDVTASQLLVTDSDFRDPDFRKQLSETVESL 145
>gnl|CDD|236563 PRK09554, feoB, ferrous iron transport protein B; Reviewed.
Length = 772
Score = 28.5 bits (64), Expect = 0.32
Identities = 13/49 (26%), Positives = 26/49 (53%)
Query: 12 ISEDVVPGQRGSLFSGEDANFEQLMVTMFDEKDKLLDNLRETQDRLSET 60
++++VV G +L++ E+ E+ F+ D+L + ET L +T
Sbjct: 579 MAKEVVVGTLNTLYTAENIQDEEFNPAEFNLGDELFGAVDETWQSLKDT 627
>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional.
Length = 508
Score = 28.1 bits (63), Expect = 0.57
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 43 KDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIAASLPQV 85
D + L +++L E LS E E + L++Q+ L +V
Sbjct: 93 LDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYRV 135
>gnl|CDD|234084 TIGR03007, pepcterm_ChnLen, polysaccharide chain length determinant
protein, PEP-CTERM locus subfamily. Members of this
protein family belong to the family of polysaccharide
chain length determinant proteins (pfam02706). All are
found in species that encode the PEP-CTERM/exosortase
system predicted to act in protein sorting in a number
of Gram-negative bacteria, and are found near the epsH
homolog that is the putative exosortase gene [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides].
Length = 498
Score = 27.7 bits (62), Expect = 0.63
Identities = 11/50 (22%), Positives = 23/50 (46%)
Query: 36 MVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIAASLPQV 85
+ D++ + E Q+ L +L+ +RD+L+RQ+ P +
Sbjct: 192 GGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVL 241
>gnl|CDD|112344 pfam03521, Kv2channel, Kv2 voltage-gated K+ channel.
Length = 277
Score = 27.7 bits (61), Expect = 0.71
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 43 KDKLLDN------LRETQDRLSETSGKLSMVEKERDSLQRQIAASLPQ 84
KDK+ DN + ++ LSETS S KE+ S ++ ++S PQ
Sbjct: 9 KDKVQDNHLSPSRWKWSKRTLSETSSNKSFDNKEQGSPEKNRSSSSPQ 56
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 27.4 bits (61), Expect = 0.92
Identities = 12/54 (22%), Positives = 24/54 (44%)
Query: 28 EDANFEQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIAAS 81
E A E+ + D++ KL L+ + ++ +L + L++QIA
Sbjct: 46 EIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADL 99
Score = 26.6 bits (59), Expect = 1.7
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 48 DNLRETQDRLSETSGKLSMVEKERDSLQRQIAASL 82
L KL+ + +ER Q+ + L
Sbjct: 185 AELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSEL 219
Score = 25.5 bits (56), Expect = 4.9
Identities = 6/33 (18%), Positives = 17/33 (51%)
Query: 48 DNLRETQDRLSETSGKLSMVEKERDSLQRQIAA 80
L++ Q ++ K+ + +R L++Q+ +
Sbjct: 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKS 70
>gnl|CDD|220368 pfam09730, BicD, Microtubule-associated protein Bicaudal-D. BicD
proteins consist of three coiled-coiled domains and are
involved in dynein-mediated minus end-directed transport
from the Golgi apparatus to the endoplasmic reticulum
(ER). For full functioning they bind with GSK-3beta
pfam05350 to maintain the anchoring of microtubules to
the centromere. It appears that amino-acid residues
437-617 of BicD and the kinase activity of GSK-3 are
necessary for the formation of a complex between BicD
and GSK-3beta in intact cells.
Length = 711
Score = 27.5 bits (61), Expect = 0.93
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 28 EDANFEQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIAA 80
E +Q + + EK LL NL+E Q +L ++ G LS ++ + L + A
Sbjct: 260 EIQKLKQQLEQVEREKASLLANLQELQTQLEQSEGALSEQHEKVNRLTEHLNA 312
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 27.4 bits (61), Expect = 0.94
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 41 DEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQ 77
+ K++ L T++ L L +EK+ + L+RQ
Sbjct: 172 ERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQ 208
Score = 25.8 bits (57), Expect = 3.5
Identities = 10/51 (19%), Positives = 26/51 (50%)
Query: 28 EDANFEQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQI 78
+ E+ + + E ++L + L E + E +L +E+E++ L+ ++
Sbjct: 843 KLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEEL 893
>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein,
HlyD family. Type I secretion is an ABC transport
process that exports proteins, without cleavage of any
signal sequence, from the cytosol to extracellular
medium across both inner and outer membranes. The
secretion signal is found in the C-terminus of the
transported protein. This model represents the adaptor
protein between the ATP-binding cassette (ABC) protein
of the inner membrane and the outer membrane protein,
and is called the membrane fusion protein. This model
selects a subfamily closely related to HlyD; it is
defined narrowly and excludes, for example, colicin V
secretion protein CvaA and multidrug efflux proteins
[Protein fate, Protein and peptide secretion and
trafficking].
Length = 423
Score = 27.3 bits (61), Expect = 1.0
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 19 GQRGSLFSGEDANFEQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQI 78
+ L D + ++++L+ L E Q RL+E +L+ K RD LQR I
Sbjct: 217 AELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLN---KARDRLQRLI 273
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 27.3 bits (61), Expect = 1.1
Identities = 11/49 (22%), Positives = 26/49 (53%)
Query: 33 EQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIAAS 81
++ + ++ E ++ + L E LS+ S K+ +EKE + L+++
Sbjct: 687 KRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKL 735
Score = 26.6 bits (59), Expect = 1.7
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 52 ETQDRLSETSGKLSMVEKERDSLQRQIA 79
E RL E K + +E+ER ++ +I
Sbjct: 983 EVLKRLDELKEKRAKLEEERKAILERIE 1010
Score = 25.8 bits (57), Expect = 4.0
Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 31 NFEQLMVTMFDEKDKLLD---NLRETQDRLSETSGKLSMVEKERDSLQRQIAASLPQV 85
EQL + + +L D + LS+ +L+ E + + + ++
Sbjct: 456 KLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVE 513
Score = 25.0 bits (55), Expect = 7.3
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 42 EKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIAA 80
+K++L + L E + L + +L ++KERD L+ Q+
Sbjct: 862 KKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRE 900
>gnl|CDD|235816 PRK06500, PRK06500, short chain dehydrogenase; Provisional.
Length = 249
Score = 26.8 bits (60), Expect = 1.2
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 62 GKLSMVEKERDSLQRQIAASLPQVGR 87
GKL + E D++ QI A +P +GR
Sbjct: 189 GKLGLPEATLDAVAAQIQALVP-LGR 213
>gnl|CDD|197876 smart00792, Agouti, Agouti protein. The agouti protein regulates
pigmentation in the mouse hair follicle producing a
black hair with a subapical yellow band. A highly
homologous protein agouti signal protein (ASIP) is
present in humans and is expressed at highest levels in
adipose tissue where it may play a role in energy
homeostasis and possibly human pigmentation.
Length = 124
Score = 26.4 bits (58), Expect = 1.5
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 56 RLSETSGKLSMVEKERDSLQRQIAASLPQVGR 87
L++ K+S E E+ LQ++ +L V R
Sbjct: 49 GLNKKPKKISAEEAEKKLLQKKEKKALTNVLR 80
>gnl|CDD|151921 pfam11483, DUF3209, Protein of unknown function (DUF3209). This
family of proteins has no known function.
Length = 122
Score = 26.3 bits (58), Expect = 1.8
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 21 RGSLFSGEDANFEQLMVTMFDEKDKLLDNLRETQDRLSET 60
RG L + DA E + + + +LD+L ET RL E
Sbjct: 80 RGRLVAVRDA--EGALKRLRMHGEAVLDDLGETHHRLHEA 117
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 26.6 bits (59), Expect = 1.8
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 30 ANFEQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQ 75
N E+L+ E +++L + E L E +L +EKE L+
Sbjct: 189 ENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELE 234
>gnl|CDD|218403 pfam05055, DUF677, Protein of unknown function (DUF677). This
family consists of AT14A like proteins from Arabidopsis
thaliana. At14a has a small domain that has sequence
similarities to integrins from fungi, insects and
humans. Transcripts of At14a are found in all
Arabidopsis tissues and localises partly to the plasma
membrane.
Length = 336
Score = 26.3 bits (58), Expect = 1.9
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 22 GSLFSGEDANFEQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKER 71
G F GE+ F +++ ++ +L+ LR+T+ +L + KL ++ R
Sbjct: 136 GDPFDGEE--FTTQFQSVYKQQVLMLEELRKTKKKLDK---KLRNIKTWR 180
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 26.1 bits (58), Expect = 3.1
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 43 KDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQI 78
+D+L L + R ++ +L+ E E D+L +++
Sbjct: 1062 RDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKL 1097
>gnl|CDD|99993 cd03823, GT1_ExpE7_like, This family is most closely related to the
GT1 family of glycosyltransferases. ExpE7 in
Sinorhizobium meliloti has been shown to be involved in
the biosynthesis of galactoglucans (exopolysaccharide
II).
Length = 359
Score = 25.7 bits (57), Expect = 3.6
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 7/60 (11%)
Query: 12 ISEDVVPGQRGSLFSGEDANFEQLMVTM--FDEKDKLLDNLRETQDRLSETSGKLSMVEK 69
++E V G G LF DA E L + + LL+ LR + E+
Sbjct: 298 MAELVRDGVNGLLFPPGDA--EDLAAALERLIDDPDLLERLRA---GIEPPRSIEDQAEE 352
>gnl|CDD|236558 PRK09545, znuA, high-affinity zinc transporter periplasmic
component; Reviewed.
Length = 311
Score = 25.7 bits (57), Expect = 3.6
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 33 EQLMVTMFDEKDKLLDNLRETQDRLSETSGKL 64
++L+ M K KL NL++ + +L++T ++
Sbjct: 163 DKLVELMPQSKAKLDANLKDFEAQLAQTDKQI 194
>gnl|CDD|222874 PHA02557, 22, prohead core protein; Provisional.
Length = 271
Score = 25.4 bits (56), Expect = 3.6
Identities = 13/63 (20%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 23 SLFSGEDANFEQLMVTMFDEK----DKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQI 78
S G F + V + +EK ++ + L E ++ L+E + +E+ + ++R++
Sbjct: 119 SFLGGLKELFVEHNVVVPEEKVDVVAEMEEELDEMEEELNELFEENVALEEYINEVKREV 178
Query: 79 AAS 81
S
Sbjct: 179 ILS 181
>gnl|CDD|205692 pfam13514, AAA_27, AAA domain. This domain is found in a number of
double-strand DNA break proteins. This domain contains a
P-loop motif.
Length = 1118
Score = 25.9 bits (57), Expect = 3.6
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 42 EKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIAAS 81
+KL + + E + +SE + L E +L R +
Sbjct: 809 AAEKLAEEIEEAEKEVSEAAAALDEAEARLTALLRAARCT 848
Score = 25.1 bits (55), Expect = 5.6
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 45 KLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIAASLPQV 85
L+ L E ++ L+ +L +EKE+ L+R LP +
Sbjct: 178 DLVKALDEAEEELANLRKELRQLEKEKQRLERLRRL-LPLL 217
>gnl|CDD|222290 pfam13654, AAA_32, AAA domain. This family includes a wide variety
of AAA domains including some that have lost essential
nucleotide binding residues in the P-loop.
Length = 509
Score = 25.5 bits (57), Expect = 4.0
Identities = 11/46 (23%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 41 DEKDKLLDNLRETQDRLSETSGKLSMVEKERD----SLQRQIAASL 82
+E+++L + + E ++ L E +L +E+E L R++A
Sbjct: 175 EEREELEEKIDELEEELQEILRQLRELEREAREKLRELDREVALFA 220
>gnl|CDD|215341 PLN02635, PLN02635, disproportionating enzyme.
Length = 538
Score = 25.5 bits (56), Expect = 4.0
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 8 VMPTISEDVVPGQRGSLFSGEDANFEQLMVTMFDE--KDKLLD 48
V+P + G+ GS +SG+DAN ++ +E KD LL+
Sbjct: 69 VLPLVPPGRKGGEDGSPYSGQDANCGNTLLISLEELVKDGLLE 111
>gnl|CDD|217933 pfam04156, IncA, IncA protein. Chlamydia trachomatis is an
obligate intracellular bacterium that develops within a
parasitophorous vacuole termed an inclusion. The
inclusion is non-fusogenic with lysosomes but intercepts
lipids from a host cell exocytic pathway. Initiation of
chlamydial development is concurrent with modification
of the inclusion membrane by a set of C.
trachomatis-encoded proteins collectively designated
Incs. One of these Incs, IncA, is functionally
associated with the homotypic fusion of inclusions. This
family probably includes members of the wider Inc family
rather than just IncA.
Length = 186
Score = 25.1 bits (55), Expect = 4.5
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 47 LDNLRETQDRLSETSGKLSMVEKERDSLQRQIAASL 82
L E Q LSE +LS +++E + L+ +IA
Sbjct: 71 PQKLEELQGELSELKQQLSELQEELEDLEERIAELE 106
>gnl|CDD|225822 COG3284, AcoR, Transcriptional activator of acetoin/glycerol
metabolism [Secondary metabolites biosynthesis,
transport, and catabolism / Transcription].
Length = 606
Score = 25.4 bits (56), Expect = 4.5
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 32 FEQLMVTMFD-EKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQI 78
E+ D EK LL L+ T +SE + L + R +L R++
Sbjct: 555 LEEQATPREDIEKAALLAALQATNGNISEAARLLGI---SRSTLYRKL 599
>gnl|CDD|218891 pfam06090, Ins_P5_2-kin, Inositol-pentakisphosphate 2-kinase. This
is a family of inositol-pentakisphosphate 2-kinases (EC
2.7.1.158) (also known as inositol
1,3,4,5,6-pentakisphosphate 2-kinase, Ins(1,3,4,5,6)P5
2-kinase) and InsP5 2-kinase). This enzyme
phosphorylates Ins(1,3,4,5,6)P5 to form
Ins(1,2,3,4,5,6)P6 (also known as InsP6 or phytate).
InsP6 is involved in many processes such as mRNA export,
nonhomologous end-joining, endocytosis and ion channel
regulation.
Length = 301
Score = 25.0 bits (55), Expect = 5.2
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 20 QRGSLFSGEDANFEQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA 79
+ GSL D F +L+ + + +L L + Q L + + S +A
Sbjct: 197 KNGSLVYS-DEKFAKLLAEYLLKDNSVLQKLLDLQKLLLSAEDGVGLESLLDVSRDFLLA 255
Query: 80 ASL 82
+L
Sbjct: 256 MTL 258
>gnl|CDD|185123 PRK15201, PRK15201, fimbriae regulatory protein FimW; Provisional.
Length = 198
Score = 25.0 bits (54), Expect = 5.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 56 RLSETSGKLSMVEKERDSLQRQIAASL 82
LSET+ LS+ E++ SL+R I L
Sbjct: 150 HLSETAALLSLSEEQTKSLRRSIMRKL 176
>gnl|CDD|145556 pfam02478, Pneumo_phosprot, Pneumovirus phosphoprotein. This
family represents the phosphoprotein of Paramyxoviridae,
a putative RNA polymerase alpha subunit that may
function in template binding.
Length = 266
Score = 25.2 bits (55), Expect = 5.8
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 24 LFSGEDANFEQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMV 67
L S + N E+ + F+EKD ++ +R+ E KLSM+
Sbjct: 127 LLSDNEDNDEESSILTFEEKDTSSLSIEARLERIEE---KLSMI 167
>gnl|CDD|189476 pfam00261, Tropomyosin, Tropomyosin.
Length = 237
Score = 24.9 bits (55), Expect = 5.9
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 48 DNLRETQDRLSETSGKLSMVEKERDSLQR 76
++L +++RL+ KL EK D +R
Sbjct: 50 EDLERSEERLATALEKLEEAEKAADESER 78
>gnl|CDD|181924 PRK09514, zntR, zinc-responsive transcriptional regulator;
Provisional.
Length = 140
Score = 24.5 bits (54), Expect = 7.4
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 53 TQDRLSETSGKLSMVEKERDSLQR 76
++L+E K++ ++ R SLQR
Sbjct: 86 VDEKLAEVEAKIAELQHMRRSLQR 109
>gnl|CDD|239799 cd04271, ZnMc_ADAM_fungal, Zinc-dependent metalloprotease,
ADAM_fungal subgroup. The adamalysin_like or ADAM (A
Disintegrin And Metalloprotease) family of
metalloproteases are integral membrane proteases acting
on a variety of extracellular targets. They are
involved in shedding soluble peptides or proteins from
the cell surface. This subfamily contains fungal ADAMs,
whose precise function has yet to be determined.
Length = 228
Score = 24.7 bits (54), Expect = 7.4
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 6/26 (23%)
Query: 2 WNMMCDVMPTISEDVVPGQRGSLFSG 27
WN+ C+ I + R S+FS
Sbjct: 68 WNLPCNSRIDIDD------RLSIFSQ 87
>gnl|CDD|226513 COG4026, COG4026, Uncharacterized protein containing TOPRIM domain,
potential nuclease [General function prediction only].
Length = 290
Score = 24.5 bits (53), Expect = 9.2
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 39 MFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQI 78
+ E ++L E Q+RL + S +E+ L ++
Sbjct: 154 LLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEV 193
>gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome
partitioning [Cell division and chromosome partitioning].
Length = 1480
Score = 24.5 bits (53), Expect = 9.5
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 43 KDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQI 78
+D+L L + R ++ +L+ E E D+L R++
Sbjct: 1061 RDELHAQLSTNRSRRNQLEKQLTFCEAEMDNLTRKL 1096
>gnl|CDD|172813 PRK14337, PRK14337, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 446
Score = 24.3 bits (53), Expect = 9.9
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 10/53 (18%)
Query: 18 PGQRGSLFSGEDANFEQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKE 70
PG R + G+ + K L L+E Q+ L+E + + V ++
Sbjct: 342 PGTRAEMLPGKVPE---------EVKSARLARLQELQNELTERWLQ-ARVGRK 384
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.131 0.371
Gapped
Lambda K H
0.267 0.0603 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,259,598
Number of extensions: 335799
Number of successful extensions: 638
Number of sequences better than 10.0: 1
Number of HSP's gapped: 635
Number of HSP's successfully gapped: 83
Length of query: 88
Length of database: 10,937,602
Length adjustment: 56
Effective length of query: 32
Effective length of database: 8,453,778
Effective search space: 270520896
Effective search space used: 270520896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.5 bits)