Query psy2909
Match_columns 165
No_of_seqs 167 out of 1091
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 20:41:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2909.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2909hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 1.2E-36 2.6E-41 288.7 8.7 130 7-142 438-571 (1463)
2 PTZ00014 myosin-A; Provisional 100.0 2.4E-36 5.3E-41 281.1 9.4 126 7-142 472-603 (821)
3 cd01387 MYSc_type_XV Myosin mo 100.0 4E-36 8.7E-41 275.7 9.3 125 7-142 371-501 (677)
4 cd01383 MYSc_type_VIII Myosin 100.0 4.7E-36 1E-40 275.1 9.2 126 7-142 375-503 (677)
5 cd01384 MYSc_type_XI Myosin mo 100.0 5.7E-36 1.2E-40 274.4 9.0 125 7-142 377-507 (674)
6 cd01381 MYSc_type_VII Myosin m 100.0 1.2E-35 2.6E-40 272.3 10.0 126 7-142 372-503 (671)
7 cd01382 MYSc_type_VI Myosin mo 100.0 1.2E-35 2.6E-40 273.9 9.2 134 7-142 407-547 (717)
8 cd01385 MYSc_type_IX Myosin mo 100.0 1.2E-35 2.6E-40 273.1 9.0 125 7-142 386-517 (692)
9 cd01378 MYSc_type_I Myosin mot 100.0 1.4E-35 3E-40 272.1 8.9 128 7-142 376-508 (674)
10 cd01379 MYSc_type_III Myosin m 100.0 1.4E-35 3E-40 271.1 8.7 127 7-142 383-512 (653)
11 cd01380 MYSc_type_V Myosin mot 100.0 2.9E-35 6.3E-40 270.5 9.6 129 7-142 378-509 (691)
12 cd01377 MYSc_type_II Myosin mo 100.0 1.3E-34 2.7E-39 266.4 9.3 130 7-142 384-517 (693)
13 smart00242 MYSc Myosin. Large 100.0 2.8E-34 6E-39 263.7 9.2 126 7-142 379-510 (677)
14 cd00124 MYSc Myosin motor doma 100.0 6.7E-34 1.5E-38 261.3 8.4 129 7-142 372-503 (679)
15 cd01386 MYSc_type_XVIII Myosin 100.0 9.3E-33 2E-37 256.0 9.7 131 7-142 383-542 (767)
16 PF00063 Myosin_head: Myosin h 100.0 1.6E-32 3.6E-37 252.2 7.2 129 7-142 374-510 (689)
17 KOG0161|consensus 100.0 2E-32 4.4E-37 268.1 5.7 132 5-147 456-595 (1930)
18 KOG0164|consensus 100.0 1.8E-31 4E-36 240.3 5.7 130 6-141 384-522 (1001)
19 KOG0163|consensus 99.9 3.8E-28 8.3E-33 220.0 7.5 128 7-136 461-592 (1259)
20 KOG0160|consensus 99.9 2.1E-27 4.5E-32 220.1 6.0 139 6-156 377-521 (862)
21 KOG0162|consensus 99.9 2E-27 4.4E-32 214.7 4.8 121 7-141 393-524 (1106)
22 KOG4229|consensus 99.9 2.6E-24 5.5E-29 203.4 7.3 127 6-142 436-568 (1062)
23 COG5022 Myosin heavy chain [Cy 81.4 1.1 2.4E-05 45.2 2.6 44 109-155 626-669 (1463)
24 PF04762 IKI3: IKI3 family; I 55.2 7.9 0.00017 37.9 2.0 34 128-161 182-226 (928)
25 PHA03302 envelope glycoprotein 31.3 16 0.00034 30.4 -0.0 44 119-163 157-211 (253)
26 COG2153 ElaA Predicted acyltra 24.5 36 0.00078 26.3 0.9 28 23-50 118-145 (155)
27 PF01801 Cytomega_gL: Cytomega 24.0 21 0.00046 29.0 -0.5 25 139-163 149-177 (215)
28 PF11323 DUF3125: Protein of u 22.9 32 0.0007 21.6 0.3 10 2-11 3-12 (50)
29 PHA01079 hypothetical protein 22.2 28 0.00061 21.4 -0.1 20 132-151 14-33 (48)
30 PF11791 Aconitase_B_N: Aconit 20.7 56 0.0012 25.3 1.3 92 41-145 7-111 (154)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.2e-36 Score=288.66 Aligned_cols=130 Identities=36% Similarity=0.558 Sum_probs=110.7
Q ss_pred ccccCCCchhhhHHhhhhHHHHHHHHHhhhhhhHHhhhhcCceeeeeccCCcHHHHHHhhcC-CCcccccchhhhccCCC
Q psy2909 7 VQQDELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK-PNGLLCVLDDQANWSRG 85 (165)
Q Consensus 7 fe~~~~NsfEQLciNyanE~Lq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldLi~~~-p~GLl~lLDee~~~p~~ 85 (165)
||.|+.|||||||||||||||||+|++|+|+.||++|.+|||.|..|+|.||++|+|||+++ |.|||++|||||.+|.+
T Consensus 438 FEiFEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~a 517 (1463)
T COG5022 438 FEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGILSLLDEECVMPHA 517 (1463)
T ss_pred hhhhccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCcchhHHHhccCCCchHhhhcHHhcCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999973 78999999999999999
Q ss_pred CCchhhHHHhhcCCCCCCCCCCCCCcceeecCCCceeeeeecCCCcc---HHHHHHHhcc
Q psy2909 86 NPMVSCVFWMIKPRLFAPTPKPLNGLFEYVRKPDCLIKLELFPPPVK---QYWLQVIRDD 142 (165)
Q Consensus 86 tD~s~~~~~~~k~~~~~~~~~~~~~~~~~~~k~~~ff~i~HyaG~V~---~~~~~~~~d~ 142 (165)
+|++|..++...-+. . .+..++..+....-|+|+||||.|. .+|+++|||+
T Consensus 518 td~s~~sKL~~~l~~-~-----~~~~f~~~rf~~~~FvvkHYAgDVeY~veg~ldKNkD~ 571 (1463)
T COG5022 518 TDESFTSKLAQRLNK-N-----SNPKFKKSRFRDNKFVVKHYAGDVEYDVEGFLDKNKDP 571 (1463)
T ss_pred CchHHHHHHHHHhcc-c-----cCccccccccCCCceEEEeecccceeeccchhhhCcch
Confidence 999999987544331 1 1111222222233355999999999 7899999986
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=2.4e-36 Score=281.13 Aligned_cols=126 Identities=24% Similarity=0.267 Sum_probs=110.9
Q ss_pred ccccCCCchhhhHHhhhhHHHHHHHHHhhhhhhHHhhhhcCceeeeeccCCcHHHHHHhhcCCCcccccchhhhccCCCC
Q psy2909 7 VQQDELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGN 86 (165)
Q Consensus 7 fe~~~~NsfEQLciNyanE~Lq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldLi~~~p~GLl~lLDee~~~p~~t 86 (165)
||.|+.||||||||||||||||++|++++|+.||++|.+|||+|..|+|.||++|||||+++|.|||+||||||++|++|
T Consensus 472 FE~f~~NSfEQLcINy~NEkLQq~F~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec~~p~~t 551 (821)
T PTZ00014 472 FEVFKNNSLEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQCLAPGGT 551 (821)
T ss_pred ccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHhCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHhhc---CCCCCCCCCCCCCcceeecCCCceeeeeecCCCcc---HHHHHHHhcc
Q psy2909 87 PMVSCVFWMIK---PRLFAPTPKPLNGLFEYVRKPDCLIKLELFPPPVK---QYWLQVIRDD 142 (165)
Q Consensus 87 D~s~~~~~~~k---~~~~~~~~~~~~~~~~~~~k~~~ff~i~HyaG~V~---~~~~~~~~d~ 142 (165)
|++|++++..+ +..|.+.+. .....|+|+||||.|. .+|+++|+|.
T Consensus 552 D~~f~~kl~~~~~~~~~f~~~~~----------~~~~~F~I~HyAG~V~Y~~~gfleKNkD~ 603 (821)
T PTZ00014 552 DEKFVSSCNTNLKNNPKYKPAKV----------DSNKNFVIKHTIGDIQYCASGFLFKNKDV 603 (821)
T ss_pred HHHHHHHHHHHhcCCCCccCCCC----------CCCCceEEEEeceeeeeccCcHHHhcccc
Confidence 99999987543 333322110 1233566999999999 7899999986
No 3
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=4e-36 Score=275.65 Aligned_cols=125 Identities=35% Similarity=0.558 Sum_probs=109.9
Q ss_pred ccccCCCchhhhHHhhhhHHHHHHHHHhhhhhhHHhhhhcCceeeeeccCCcHHHHHHhhcCCCcccccchhhhccCCCC
Q psy2909 7 VQQDELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGN 86 (165)
Q Consensus 7 fe~~~~NsfEQLciNyanE~Lq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldLi~~~p~GLl~lLDee~~~p~~t 86 (165)
||.|+.||||||||||||||||++|++++|+.||++|.+|||+|..|+|.||++|+|||+++|.|||+||||||++|+++
T Consensus 371 FE~f~~NsfEQLcINyaNEkLQ~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p~~t 450 (677)
T cd01387 371 FEDLSFNSFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFPQAT 450 (677)
T ss_pred cccCCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcCCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHhhcC---CCCCCCCCCCCCcceeecCCCceeeeeecCCCcc---HHHHHHHhcc
Q psy2909 87 PMVSCVFWMIKP---RLFAPTPKPLNGLFEYVRKPDCLIKLELFPPPVK---QYWLQVIRDD 142 (165)
Q Consensus 87 D~s~~~~~~~k~---~~~~~~~~~~~~~~~~~~k~~~ff~i~HyaG~V~---~~~~~~~~d~ 142 (165)
|++|++++...+ +.|.+ .+.+...|+|+||||.|. .+|+++|+|.
T Consensus 451 d~~~~~kl~~~~~~~~~~~~-----------~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~ 501 (677)
T cd01387 451 DHTFLQKCHYHHGANPLYSK-----------PKMPLPEFTIKHYAGKVTYQVHKFLDKNHDQ 501 (677)
T ss_pred hHHHHHHHHHhccCCccccC-----------CCCCCCeeEEEEeCceeeecCCChHHhccch
Confidence 999999875432 22211 011233566999999999 7889999884
No 4
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=4.7e-36 Score=275.13 Aligned_cols=126 Identities=35% Similarity=0.587 Sum_probs=109.6
Q ss_pred ccccCCCchhhhHHhhhhHHHHHHHHHhhhhhhHHhhhhcCceeeeeccCCcHHHHHHhhcCCCcccccchhhhccCCCC
Q psy2909 7 VQQDELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGN 86 (165)
Q Consensus 7 fe~~~~NsfEQLciNyanE~Lq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldLi~~~p~GLl~lLDee~~~p~~t 86 (165)
||.|+.||||||||||||||||++|++++|+.||++|.+|||+|..|+|.||++|||||+++|.|||++|||||++|++|
T Consensus 375 FE~f~~NsfEQLcINyaNEkLQ~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~p~~t 454 (677)
T cd01383 375 FESFDKNSFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTFPNAT 454 (677)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHhhcCCCCCCCCCCCCCcceeecCCCceeeeeecCCCcc---HHHHHHHhcc
Q psy2909 87 PMVSCVFWMIKPRLFAPTPKPLNGLFEYVRKPDCLIKLELFPPPVK---QYWLQVIRDD 142 (165)
Q Consensus 87 D~s~~~~~~~k~~~~~~~~~~~~~~~~~~~k~~~ff~i~HyaG~V~---~~~~~~~~d~ 142 (165)
|++|++++..+.+.- + .+. ..++. .|+|+||||.|. .+|+++|+|.
T Consensus 455 D~~f~~kl~~~~~~~---~-----~~~-~~~~~-~F~I~HyAG~V~Y~v~gfleKNrD~ 503 (677)
T cd01383 455 DLTFANKLKQHLKTN---S-----CFR-GERGG-AFTVRHYAGEVTYDTTGFLEKNRDL 503 (677)
T ss_pred HHHHHHHHHHHhCCC---C-----CCC-CCCCC-ceEEEEeccceeecCCChHHhcccc
Confidence 999999886442110 0 010 01233 466999999999 7899999985
No 5
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=5.7e-36 Score=274.43 Aligned_cols=125 Identities=34% Similarity=0.525 Sum_probs=110.1
Q ss_pred ccccCCCchhhhHHhhhhHHHHHHHHHhhhhhhHHhhhhcCceeeeeccCCcHHHHHHhhcCCCcccccchhhhccCCCC
Q psy2909 7 VQQDELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGN 86 (165)
Q Consensus 7 fe~~~~NsfEQLciNyanE~Lq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldLi~~~p~GLl~lLDee~~~p~~t 86 (165)
||.|+.||||||||||||||||++|++++|+.||++|.+|||+|..|+|.||++|||||+++|.|||++|||||++|++|
T Consensus 377 FE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~p~~t 456 (674)
T cd01384 377 FESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKST 456 (674)
T ss_pred ccccCcCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHhhcC---CCCCCCCCCCCCcceeecCCCceeeeeecCCCcc---HHHHHHHhcc
Q psy2909 87 PMVSCVFWMIKP---RLFAPTPKPLNGLFEYVRKPDCLIKLELFPPPVK---QYWLQVIRDD 142 (165)
Q Consensus 87 D~s~~~~~~~k~---~~~~~~~~~~~~~~~~~~k~~~ff~i~HyaG~V~---~~~~~~~~d~ 142 (165)
|++|++++..+. +.|.+ . +.....|.|+||||.|. .+|+++|+|.
T Consensus 457 d~~f~~kl~~~~~~~~~~~~------~-----~~~~~~F~I~HyAG~V~Y~v~gfleKN~D~ 507 (674)
T cd01384 457 HETFAQKLYQTFKDHKRFEK------P-----KLSRTAFTIDHYAGDVTYQTDQFLDKNKDY 507 (674)
T ss_pred HHHHHHHHHHHhcCCCCCCC------C-----CCCCCeeEEEEecceeeecCCCHHHhcCCc
Confidence 999999875442 22211 0 11124566999999999 7889999884
No 6
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=1.2e-35 Score=272.34 Aligned_cols=126 Identities=33% Similarity=0.561 Sum_probs=110.3
Q ss_pred ccccCCCchhhhHHhhhhHHHHHHHHHhhhhhhHHhhhhcCceeeeeccCCcHHHHHHhhcCCCcccccchhhhccCCCC
Q psy2909 7 VQQDELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGN 86 (165)
Q Consensus 7 fe~~~~NsfEQLciNyanE~Lq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldLi~~~p~GLl~lLDee~~~p~~t 86 (165)
||.|+.||||||||||||||||++|++++|+.||++|.+|||+|..|+|.||++|||||+++|.|||++|||||++|+++
T Consensus 372 FE~f~~NsfEQLcINy~NEkLQ~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~t 451 (671)
T cd01381 372 FENFDVNSFEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKFPKGT 451 (671)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHhhc---CCCCCCCCCCCCCcceeecCCCceeeeeecCCCcc---HHHHHHHhcc
Q psy2909 87 PMVSCVFWMIK---PRLFAPTPKPLNGLFEYVRKPDCLIKLELFPPPVK---QYWLQVIRDD 142 (165)
Q Consensus 87 D~s~~~~~~~k---~~~~~~~~~~~~~~~~~~~k~~~ff~i~HyaG~V~---~~~~~~~~d~ 142 (165)
|++|++++..+ +..|...+ ......|+|+||||.|. .+|+++|+|.
T Consensus 452 d~~f~~kl~~~~~~~~~~~~~~----------~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~ 503 (671)
T cd01381 452 DQTMLEKLHSQHGLHSNYLKPK----------STQETQFGINHFAGVVFYDTRGFLEKNRDT 503 (671)
T ss_pred HHHHHHHHHHHhcCCCCcccCC----------CCCCCceEEEEecceEeeccCCHHHhccch
Confidence 99999987543 22232110 11234566999999999 7888888885
No 7
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=1.2e-35 Score=273.90 Aligned_cols=134 Identities=28% Similarity=0.444 Sum_probs=110.5
Q ss_pred ccccCCCchhhhHHhhhhHHHHHHHHHhhhhhhHHhhhhcCceeeeeccCCcHHHHHHhhcCCCcccccchhhhccCCCC
Q psy2909 7 VQQDELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGN 86 (165)
Q Consensus 7 fe~~~~NsfEQLciNyanE~Lq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldLi~~~p~GLl~lLDee~~~p~~t 86 (165)
||.|+.||||||||||||||||++|++++|..||++|++|||+|..|+|.||++|||||+++|.|||++|||||++|++|
T Consensus 407 FE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~lLDee~~~p~~t 486 (717)
T cd01382 407 FEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDILDEENRLPQPS 486 (717)
T ss_pred cccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHHhHHHhcCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHhhcCC---CC-CCCCCCCCCcceeecCCCceeeeeecCCCcc---HHHHHHHhcc
Q psy2909 87 PMVSCVFWMIKPR---LF-APTPKPLNGLFEYVRKPDCLIKLELFPPPVK---QYWLQVIRDD 142 (165)
Q Consensus 87 D~s~~~~~~~k~~---~~-~~~~~~~~~~~~~~~k~~~ff~i~HyaG~V~---~~~~~~~~d~ 142 (165)
|++|++++..++. .+ .|.++..... +.. .....|+|+||||.|. .+|+++|+|.
T Consensus 487 D~~f~~kl~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~F~I~HyAG~V~Y~v~gfleKNkD~ 547 (717)
T cd01382 487 DQHFTSVVHQKHKDHFRLTIPRKSKLAVH-RNL-RDDEGFIIRHFAGAVCYETTQFVEKNNDA 547 (717)
T ss_pred HHHHHHHHHHHhcCCcCccCCCccccccc-ccc-CCCCCEEEEecceeEeecCCChHHhcCcc
Confidence 9999998754422 22 1111111000 000 1223466999999999 7888888875
No 8
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=1.2e-35 Score=273.07 Aligned_cols=125 Identities=38% Similarity=0.671 Sum_probs=109.6
Q ss_pred ccccCC-CchhhhHHhhhhHHHHHHHHHhhhhhhHHhhhhcCceeeeeccCCcHHHHHHhhcCCCcccccchhhhccCCC
Q psy2909 7 VQQDEL-FRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRG 85 (165)
Q Consensus 7 fe~~~~-NsfEQLciNyanE~Lq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldLi~~~p~GLl~lLDee~~~p~~ 85 (165)
||.|+. ||||||||||||||||++|++++|+.||++|.+|||+|..|+|.||++|||||++||.|||++|||||++|++
T Consensus 386 FE~f~~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~~p~~ 465 (692)
T cd01385 386 FEDFGRCNSFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESNFPHA 465 (692)
T ss_pred cccCCCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhcCCCC
Confidence 799998 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhHHHhhcC---CCCCCCCCCCCCcceeecCCCceeeeeecCCCcc---HHHHHHHhcc
Q psy2909 86 NPMVSCVFWMIKP---RLFAPTPKPLNGLFEYVRKPDCLIKLELFPPPVK---QYWLQVIRDD 142 (165)
Q Consensus 86 tD~s~~~~~~~k~---~~~~~~~~~~~~~~~~~~k~~~ff~i~HyaG~V~---~~~~~~~~d~ 142 (165)
||++|++++..++ +.|.+ + +.....|+|+||||.|. .+|+++|+|.
T Consensus 466 td~~~l~kl~~~~~~~~~~~~-~----------~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~ 517 (692)
T cd01385 466 TSQTLLAKFNQQHKDNKYYEG-P----------QVKEPAFIIQHYAGKVKYQIKDFREKNMDL 517 (692)
T ss_pred CHHHHHHHHHHHhCCCCCccC-C----------CCCCCeEEEEEecceeeecCCCHHHhcccc
Confidence 9999999876543 22211 0 11223466999999999 7888888885
No 9
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=1.4e-35 Score=272.06 Aligned_cols=128 Identities=29% Similarity=0.456 Sum_probs=110.6
Q ss_pred ccccCCCchhhhHHhhhhHHHHHHHHHhhhhhhHHhhhhcCceeeeeccCCcHHHHHHhhc-CCCcccccchhhhccC-C
Q psy2909 7 VQQDELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLDDQANWS-R 84 (165)
Q Consensus 7 fe~~~~NsfEQLciNyanE~Lq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldLi~~-~p~GLl~lLDee~~~p-~ 84 (165)
||.|+.||||||||||||||||++|++++|+.||++|.+|||+|..|+|.||++|+|||++ +|.|||++|||||++| +
T Consensus 376 FE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~~p~~ 455 (674)
T cd01378 376 FEIFQKNSFEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCATPHE 455 (674)
T ss_pred ccccccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHcCCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999 8999999999999999 9
Q ss_pred CCCchhhHHHhhcCCCCCCCCCCCCCcceeecCCCceeeeeecCCCcc---HHHHHHHhcc
Q psy2909 85 GNPMVSCVFWMIKPRLFAPTPKPLNGLFEYVRKPDCLIKLELFPPPVK---QYWLQVIRDD 142 (165)
Q Consensus 85 ~tD~s~~~~~~~k~~~~~~~~~~~~~~~~~~~k~~~ff~i~HyaG~V~---~~~~~~~~d~ 142 (165)
+||++|++++..+... .+. +.........|.|+||||.|. .+|+++|+|.
T Consensus 456 ~tD~~~~~kl~~~~~~---~~~-----~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNrD~ 508 (674)
T cd01378 456 GTDQTFLEKLNKKFSS---HPH-----SDHFSSGSDEFRIKHYAGDVTYSVEGFCDKNKDT 508 (674)
T ss_pred CChHHHHHHHHHHhcc---CCC-----CCCCCCCCCcEEEEEeceeeeecCcCHHHhhcch
Confidence 9999999998654321 111 111112234566999999999 7899999985
No 10
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=1.4e-35 Score=271.09 Aligned_cols=127 Identities=32% Similarity=0.487 Sum_probs=110.2
Q ss_pred ccccCCCchhhhHHhhhhHHHHHHHHHhhhhhhHHhhhhcCceeeeeccCCcHHHHHHhhcCCCcccccchhhhccCCCC
Q psy2909 7 VQQDELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGN 86 (165)
Q Consensus 7 fe~~~~NsfEQLciNyanE~Lq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldLi~~~p~GLl~lLDee~~~p~~t 86 (165)
||.|+.||||||||||||||||++|++++|+.||++|.+|||+|..++|.||++|||||+++|.|||++|||||++|++|
T Consensus 383 FE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~~~~~t 462 (653)
T cd01379 383 FENFKKNSFEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESRFPQAT 462 (653)
T ss_pred cccCCCCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhcCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHhhcCCCCCCCCCCCCCcceeecCCCceeeeeecCCCcc---HHHHHHHhcc
Q psy2909 87 PMVSCVFWMIKPRLFAPTPKPLNGLFEYVRKPDCLIKLELFPPPVK---QYWLQVIRDD 142 (165)
Q Consensus 87 D~s~~~~~~~k~~~~~~~~~~~~~~~~~~~k~~~ff~i~HyaG~V~---~~~~~~~~d~ 142 (165)
|++|++++..+++.- . +...+.....|+|+||||.|. .+|+++|+|.
T Consensus 463 d~~~~~kl~~~~~~~-----~----~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~ 512 (653)
T cd01379 463 DQTLVEKFEDNLKSK-----F----FWRPKRVELSFGIHHYAGKVLYNASGFLEKNRDF 512 (653)
T ss_pred HHHHHHHHHHhcCCC-----C----ccCCCCCCCceEEEEeceeEeecCCCHHHhcccc
Confidence 999999876543210 0 000011233566999999999 7899999985
No 11
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=2.9e-35 Score=270.54 Aligned_cols=129 Identities=40% Similarity=0.571 Sum_probs=108.9
Q ss_pred ccccCCCchhhhHHhhhhHHHHHHHHHhhhhhhHHhhhhcCceeeeeccCCcHHHHHHhhcCCCcccccchhhhccCCCC
Q psy2909 7 VQQDELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGN 86 (165)
Q Consensus 7 fe~~~~NsfEQLciNyanE~Lq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldLi~~~p~GLl~lLDee~~~p~~t 86 (165)
||.|+.|||||||||||||+||++|++++|+.||++|.+|||+|+.++|.||++|||||++ |.|||++|||||++|++|
T Consensus 378 FE~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~-~~Gil~lLdee~~~p~~t 456 (691)
T cd01380 378 FETFEKNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIES-KLGILSLLDEECRLPKGS 456 (691)
T ss_pred ccccCCCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhC-CCchHHHhHHhhcCCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999997 589999999999999999
Q ss_pred CchhhHHHhhcCCCCCCCCCCCCCcceeecCCCceeeeeecCCCcc---HHHHHHHhcc
Q psy2909 87 PMVSCVFWMIKPRLFAPTPKPLNGLFEYVRKPDCLIKLELFPPPVK---QYWLQVIRDD 142 (165)
Q Consensus 87 D~s~~~~~~~k~~~~~~~~~~~~~~~~~~~k~~~ff~i~HyaG~V~---~~~~~~~~d~ 142 (165)
|++|++++..++... . +..+...+.....|+|+||||.|. .+|+++|+|.
T Consensus 457 d~~f~~kl~~~~~~~---~---~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~ 509 (691)
T cd01380 457 DESWAQKLYNKLPKK---K---NPHFEKPRFGQTSFTVKHFADDVEYDVDGFLEKNRDT 509 (691)
T ss_pred hHHHHHHHHHHhccc---C---CCCccCCCCCCCeeEEEEccCCcccccccHHHhcccc
Confidence 999999876543210 0 001111111234566999999999 7888888885
No 12
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=1.3e-34 Score=266.44 Aligned_cols=130 Identities=32% Similarity=0.521 Sum_probs=108.9
Q ss_pred ccccCCCchhhhHHhhhhHHHHHHHHHhhhhhhHHhhhhcCceeeeecc-CCcHHHHHHhhcCCCcccccchhhhccCCC
Q psy2909 7 VQQDELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQANWSRG 85 (165)
Q Consensus 7 fe~~~~NsfEQLciNyanE~Lq~~f~~~~f~~e~~~y~~EgI~~~~i~~-~dn~~~ldLi~~~p~GLl~lLDee~~~p~~ 85 (165)
||.|+.|||||||||||||+||++|++++|+.||++|.+|||+|+.++| .||++|||||+++|.|||++|||||++|++
T Consensus 384 FE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~~~~ 463 (693)
T cd01377 384 FEIFDFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPKA 463 (693)
T ss_pred ccccCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcCCCC
Confidence 8999999999999999999999999999999999999999999999999 499999999999999999999999999999
Q ss_pred CCchhhHHHhhcCCCCCCCCCCCCCcceeecCCCceeeeeecCCCcc---HHHHHHHhcc
Q psy2909 86 NPMVSCVFWMIKPRLFAPTPKPLNGLFEYVRKPDCLIKLELFPPPVK---QYWLQVIRDD 142 (165)
Q Consensus 86 tD~s~~~~~~~k~~~~~~~~~~~~~~~~~~~k~~~ff~i~HyaG~V~---~~~~~~~~d~ 142 (165)
||++|++++..++.... ... ..........|+|+||||.|. .+|+++|+|.
T Consensus 464 tD~~~~~kl~~~~~~~~----~~~--~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~ 517 (693)
T cd01377 464 TDKTFVEKLYDNHLGKS----KFK--KPKKGKAKAHFSLVHYAGTVDYNIDGWLEKNKDP 517 (693)
T ss_pred CHHHHHHHHHHHhcCCC----ccc--ccCCCCCCCcEEEEeeceeEeeccccHHHhcccc
Confidence 99999998764432110 000 000112233466999999999 6788888875
No 13
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=2.8e-34 Score=263.73 Aligned_cols=126 Identities=37% Similarity=0.624 Sum_probs=109.8
Q ss_pred ccccCCCchhhhHHhhhhHHHHHHHHHhhhhhhHHhhhhcCceeeeeccCCcHHHHHHhhcCCCcccccchhhhccCCCC
Q psy2909 7 VQQDELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGN 86 (165)
Q Consensus 7 fe~~~~NsfEQLciNyanE~Lq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldLi~~~p~GLl~lLDee~~~p~~t 86 (165)
||.++.||||||||||||||||++|++++|+.|+++|.+|||+|+.++|.||++|||||+++|.|||++|||||++|+++
T Consensus 379 FE~f~~NsfEQLcINyaNEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~~t 458 (677)
T smart00242 379 FEIFEVNSFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFPKAT 458 (677)
T ss_pred ccccccCCHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHhhcC---CCCCCCCCCCCCcceeecCCCceeeeeecCCCcc---HHHHHHHhcc
Q psy2909 87 PMVSCVFWMIKP---RLFAPTPKPLNGLFEYVRKPDCLIKLELFPPPVK---QYWLQVIRDD 142 (165)
Q Consensus 87 D~s~~~~~~~k~---~~~~~~~~~~~~~~~~~~k~~~ff~i~HyaG~V~---~~~~~~~~d~ 142 (165)
|++|++++..+. ..|... .......|.|+||||.|. .+|+++|+|.
T Consensus 459 d~~~~~kl~~~~~~~~~~~~~----------~~~~~~~F~I~H~AG~V~Y~~~gfleKN~D~ 510 (677)
T smart00242 459 DQTFLEKLNQTHEKHPHFSKP----------RKKGRTEFIIKHYAGDVTYDVTGFLEKNKDT 510 (677)
T ss_pred HHHHHHHHHHHhcCCCCccCC----------CCCCCCeEEEEecceeEeecCccHHHHccch
Confidence 999999876542 222110 012234466999999999 7888888875
No 14
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=6.7e-34 Score=261.32 Aligned_cols=129 Identities=36% Similarity=0.588 Sum_probs=110.0
Q ss_pred ccccCCCchhhhHHhhhhHHHHHHHHHhhhhhhHHhhhhcCceeeeeccCCcHHHHHHhhcCCCcccccchhhhccCCCC
Q psy2909 7 VQQDELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGN 86 (165)
Q Consensus 7 fe~~~~NsfEQLciNyanE~Lq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldLi~~~p~GLl~lLDee~~~p~~t 86 (165)
||.++.||||||||||||||||++|++++|+.|+++|.+|||.|..++|.||++|+|||+++|.|||++|||||++|+++
T Consensus 372 FE~f~~NsfEQLcINy~NEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~~~~~ 451 (679)
T cd00124 372 FEIFEKNSFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFPKGT 451 (679)
T ss_pred cccCCCCCHHHHhcccchHHHHHHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHhhcCCCCCCCCCCCCCcceeecCCCceeeeeecCCCcc---HHHHHHHhcc
Q psy2909 87 PMVSCVFWMIKPRLFAPTPKPLNGLFEYVRKPDCLIKLELFPPPVK---QYWLQVIRDD 142 (165)
Q Consensus 87 D~s~~~~~~~k~~~~~~~~~~~~~~~~~~~k~~~ff~i~HyaG~V~---~~~~~~~~d~ 142 (165)
|++|++++...++.... . ..........|+|+||||.|. .+|+++|+|.
T Consensus 452 d~~~~~kl~~~~~~~~~----~---~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKN~D~ 503 (679)
T cd00124 452 DETFLEKLNNKLKSNNA----F---YPAKKNAPTEFTIKHYAGDVTYDARGFLEKNKDV 503 (679)
T ss_pred HHHHHHHHHHHhcCCcc----c---ccCCCCCCCceEEEeeceeEEecCCCHHHhcCCc
Confidence 99999987654322100 0 000112233456999999999 7888888874
No 15
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=99.98 E-value=9.3e-33 Score=256.00 Aligned_cols=131 Identities=23% Similarity=0.275 Sum_probs=105.1
Q ss_pred ccccC------CCchhhhHHhhhhHHHHHHHHHhhhhhhHHhhhhcCceeeeecc-CCcHHHHHHhhcCC----------
Q psy2909 7 VQQDE------LFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKP---------- 69 (165)
Q Consensus 7 fe~~~------~NsfEQLciNyanE~Lq~~f~~~~f~~e~~~y~~EgI~~~~i~~-~dn~~~ldLi~~~p---------- 69 (165)
||.|+ .||||||||||||||||++|++++|+.||++|.+|||+|+.+.+ .||++||+||+++|
T Consensus 383 FE~f~~n~~~~~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~~~~ 462 (767)
T cd01386 383 FQNPASQGKDRAATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLR 462 (767)
T ss_pred ccccccccccCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccccccccchhh
Confidence 78886 48999999999999999999999999999999999999986555 79999999999865
Q ss_pred ----CcccccchhhhccCCCCCchhhHHHhhc---CCCCCCCCCCCCCcceeecCCCceeeeeecCCC--cc---HHHHH
Q psy2909 70 ----NGLLCVLDDQANWSRGNPMVSCVFWMIK---PRLFAPTPKPLNGLFEYVRKPDCLIKLELFPPP--VK---QYWLQ 137 (165)
Q Consensus 70 ----~GLl~lLDee~~~p~~tD~s~~~~~~~k---~~~~~~~~~~~~~~~~~~~k~~~ff~i~HyaG~--V~---~~~~~ 137 (165)
.|||++|||||++|++||++|++++..+ ++.|.....+ .....++.. |+|+||||. |. .+|++
T Consensus 463 ~~~~~GIl~lLDEec~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~----~~~~~~~~~-F~I~HyAG~~~V~Y~~~gfle 537 (767)
T cd01386 463 AEDARGLLWLLDEEALVPGSSDDTFLERLFAAYGDRETRETGLSR----LRTCEGPLQ-FVLFHLLGTNPVLYDVTGWLR 537 (767)
T ss_pred ccCCCchhhhhhHhhcCCCCcHHHHHHHHHHHhccCCCcccCccc----cccCCCCCc-EEEEEcCCCCceEecCCCHHH
Confidence 5999999999999999999999987543 2222111100 111112334 669999995 98 78999
Q ss_pred HHhcc
Q psy2909 138 VIRDD 142 (165)
Q Consensus 138 ~~~d~ 142 (165)
+|||.
T Consensus 538 KNkD~ 542 (767)
T cd01386 538 RAKPN 542 (767)
T ss_pred hcCCC
Confidence 99984
No 16
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=99.97 E-value=1.6e-32 Score=252.16 Aligned_cols=129 Identities=38% Similarity=0.654 Sum_probs=104.3
Q ss_pred ccccCCCchhhhHHhhhhHHHHHHHHHhhhhhhHHhhhhcCceeeeecc-CCcHHHHHHhhcCCCcccccchhhhccCCC
Q psy2909 7 VQQDELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQANWSRG 85 (165)
Q Consensus 7 fe~~~~NsfEQLciNyanE~Lq~~f~~~~f~~e~~~y~~EgI~~~~i~~-~dn~~~ldLi~~~p~GLl~lLDee~~~p~~ 85 (165)
||++..|+||||||||||||||++|++++|..|+++|.+|||.|+.++| .||++|||||+++|.|||+||||||+.|++
T Consensus 374 FE~~~~N~fEQLciNyanErLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~~~~ 453 (689)
T PF00063_consen 374 FENFSVNSFEQLCINYANERLQQFFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLLPRG 453 (689)
T ss_dssp B---SSB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTSTTS
T ss_pred cccccccccccceeeeccccccceeeeecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhcccc
Confidence 7999999999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred CCchhhHHHhhcC----CCCCCCCCCCCCcceeecCCCceeeeeecCCCcc---HHHHHHHhcc
Q psy2909 86 NPMVSCVFWMIKP----RLFAPTPKPLNGLFEYVRKPDCLIKLELFPPPVK---QYWLQVIRDD 142 (165)
Q Consensus 86 tD~s~~~~~~~k~----~~~~~~~~~~~~~~~~~~k~~~ff~i~HyaG~V~---~~~~~~~~d~ 142 (165)
+|++|+.++..++ +.|... + +. ...+...|+|+||||.|. .+|+++++|.
T Consensus 454 sd~~fl~kl~~~~~~~~~~~~~~--~----~~-~~~~~~~F~I~HyaG~V~Y~v~gfleKNrD~ 510 (689)
T PF00063_consen 454 SDESFLEKLLKRHSGKHPSFVKP--R----FS-RSTSKSSFTIKHYAGDVTYDVEGFLEKNRDP 510 (689)
T ss_dssp -HHHHHHHHHHHHTTTSTTEECT--S----SS-TSSTTSCEEEEETTEEEEEE-TTHHHHHHE-
T ss_pred hhhHHHHHHHhhcccCCCccccc--c----cc-cccCCCceEeecccCcceeccccccccccch
Confidence 9999999875443 332111 0 00 113345566999999999 6788999874
No 17
>KOG0161|consensus
Probab=99.97 E-value=2e-32 Score=268.14 Aligned_cols=132 Identities=33% Similarity=0.542 Sum_probs=112.7
Q ss_pred ccccccCCCchhhhHHhhhhHHHHHHHHHhhhhhhHHhhhhcCceeeeecc-CCcHHHHHHhhcCCCcccccchhhhccC
Q psy2909 5 NLVQQDELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQANWS 83 (165)
Q Consensus 5 ~lfe~~~~NsfEQLciNyanE~Lq~~f~~~~f~~e~~~y~~EgI~~~~i~~-~dn~~~ldLi~~~p~GLl~lLDee~~~p 83 (165)
.-||+|+.||||||||||+||+||++|++++|..+|++|++|||.|..|+| .|-++|+|||++ |.||+|+|||||.+|
T Consensus 456 aGFEIfe~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgIew~fidfG~Dlq~~idLIEk-p~Gi~slLdEEc~~P 534 (1930)
T KOG0161|consen 456 AGFEIFEFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWDFIDFGLDLQPTIDLIEK-PMGILSLLDEECVVP 534 (1930)
T ss_pred ccccccCcCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCCceeeeccccchhhhHHHHhc-hhhHHHHHHHHHhcC
Confidence 369999999999999999999999999999999999999999999999999 599999999995 679999999999999
Q ss_pred CCCCchhhHHHh----hcCCCCCCCCCCCCCcceeecCCCceeeeeecCCCcc---HHHHHHHhcccccee
Q psy2909 84 RGNPMVSCVFWM----IKPRLFAPTPKPLNGLFEYVRKPDCLIKLELFPPPVK---QYWLQVIRDDGIAQT 147 (165)
Q Consensus 84 ~~tD~s~~~~~~----~k~~~~~~~~~~~~~~~~~~~k~~~ff~i~HyaG~V~---~~~~~~~~d~~v~~~ 147 (165)
++||.+|+.+++ +|+..|.+.+ ..+....|.|.||||+|. .+|+++++|| ++++
T Consensus 535 kAtd~tf~~kL~~~~~gk~~~f~~~k---------~~~~~~~F~l~HyaG~V~Y~~~~WL~Knkdp-ln~~ 595 (1930)
T KOG0161|consen 535 KATDKTFLEKLCDQHLGKHPKFQKPK---------GKKAEAHFALVHYAGTVDYNVDGWLEKNKDP-LNDN 595 (1930)
T ss_pred CCccchHHHHHHHHhhccCccccCcc---------cccchhhhheeeecceeccCccchhhcCCCC-chHH
Confidence 999999999864 4555553221 112344566999999999 6888888887 4443
No 18
>KOG0164|consensus
Probab=99.97 E-value=1.8e-31 Score=240.35 Aligned_cols=130 Identities=28% Similarity=0.373 Sum_probs=108.9
Q ss_pred cccccCCCchhhhHHhhhhHHHHHHHHHhhhhhhHHhhhhcCceeeeeccCCcHHHHHHhhcCCCcccccchhhhccCC-
Q psy2909 6 LVQQDELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSR- 84 (165)
Q Consensus 6 lfe~~~~NsfEQLciNyanE~Lq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldLi~~~p~GLl~lLDee~~~p~- 84 (165)
-||.|..||||||||||+|||||+.|++.+++.||++|.+|||+|..|+|.+|..++||++.+.+|||+||||||+.|+
T Consensus 384 gfeif~~NSFEQfcINYCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~~G~ 463 (1001)
T KOG0164|consen 384 GFEIFQDNSFEQFCINYCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLRPGT 463 (1001)
T ss_pred eEEeecCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcCCCc
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCchhhHHHh---hcCCCCCCCCCCCCCcceeecC--CCceeeeeecCCCccH---HHHHHHhc
Q psy2909 85 GNPMVSCVFWM---IKPRLFAPTPKPLNGLFEYVRK--PDCLIKLELFPPPVKQ---YWLQVIRD 141 (165)
Q Consensus 85 ~tD~s~~~~~~---~k~~~~~~~~~~~~~~~~~~~k--~~~ff~i~HyaG~V~~---~~~~~~~d 141 (165)
.||.+|+.++- .++.+|...... ...| +...|-|.||||.|.| |+.|+++|
T Consensus 464 vtD~tfL~~l~~~~~~H~Hy~sr~~~------~~dksl~~~~Fri~HYAG~V~YsV~gFidKN~D 522 (1001)
T KOG0164|consen 464 VTDETFLEKLNQKLKKHPHYTSRKLK------QTDKSLGFSDFRITHYAGDVTYSVEGFIDKNND 522 (1001)
T ss_pred cchHHHHHHHHHHhhhCCcchhhhcc------ccccccCccceeEEEeccceEEEEEeeeccCcc
Confidence 78999998764 445555422211 1111 3345669999999994 55666655
No 19
>KOG0163|consensus
Probab=99.95 E-value=3.8e-28 Score=219.98 Aligned_cols=128 Identities=33% Similarity=0.478 Sum_probs=108.0
Q ss_pred ccccCCCchhhhHHhhhhHHHHHHHHHhhhhhhHHhhhhcCceeeeeccCCcHHHHHHhhcCCCcccccchhhhccCCCC
Q psy2909 7 VQQDELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGN 86 (165)
Q Consensus 7 fe~~~~NsfEQLciNyanE~Lq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldLi~~~p~GLl~lLDee~~~p~~t 86 (165)
||-|.+||||||||||+||+||+||++++++.||+.|..||+.++.|.|.||++||+||+.|..|||.|||||+++|+++
T Consensus 461 FEyf~~NSFEQFCINyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDEEaklP~~s 540 (1259)
T KOG0163|consen 461 FEYFAVNSFEQFCINYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDEEAKLPKPS 540 (1259)
T ss_pred ceeeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhhhhccCCCcc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHhhc----CCCCCCCCCCCCCcceeecCCCceeeeeecCCCccHHHH
Q psy2909 87 PMVSCVFWMIK----PRLFAPTPKPLNGLFEYVRKPDCLIKLELFPPPVKQYWL 136 (165)
Q Consensus 87 D~s~~~~~~~k----~~~~~~~~~~~~~~~~~~~k~~~ff~i~HyaG~V~~~~~ 136 (165)
++.|..+...+ +|.-.|.++..+.+.. .+.+..|. |+||||+|.|.-.
T Consensus 541 ~qhFT~~vHe~~k~HfRL~~PRkSklksHR~-lRDdEG~l-iRHfAGaVCYeT~ 592 (1259)
T KOG0163|consen 541 YQHFTARVHESNKNHFRLDLPRKSKLKSHRE-LRDDEGFL-IRHFAGAVCYETE 592 (1259)
T ss_pred hHHHHHHHHHhhhcceeecCCchhhhhhhhh-hcccccee-eeecccceeechH
Confidence 99998764332 3444455554443322 22455666 9999999995433
No 20
>KOG0160|consensus
Probab=99.94 E-value=2.1e-27 Score=220.05 Aligned_cols=139 Identities=37% Similarity=0.551 Sum_probs=116.6
Q ss_pred cccccCCCchhhhHHhhhhHHHHHHHHHhhhhhhHHhhhhcCceeeeeccCCcHHHHHHhhcCCCcccccchhhhccCCC
Q psy2909 6 LVQQDELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRG 85 (165)
Q Consensus 6 lfe~~~~NsfEQLciNyanE~Lq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldLi~~~p~GLl~lLDee~~~p~~ 85 (165)
.||.|+.|+|||||||||||+||+.|++|+|+.||++|..|+|+|..+++.||++|+++|+. |.|++++|||+|.+|.+
T Consensus 377 gFEsF~~nsfeQfcINyanEkLqq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~lp~~ 455 (862)
T KOG0160|consen 377 GFESFEVNSFEQFCINYANEKLQQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECMLPKG 455 (862)
T ss_pred cccccccCcHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhccCCCC
Confidence 59999999999999999999999999999999999999999999999999999999999997 89999999999999999
Q ss_pred CCchhhHHHhhcC---CCCCCCCCCCCCcceeecCCCceeeeeecCCCccH---HHHHHHhccccceeEEEEEcCCc
Q psy2909 86 NPMVSCVFWMIKP---RLFAPTPKPLNGLFEYVRKPDCLIKLELFPPPVKQ---YWLQVIRDDGIAQTIIIYWNGDQ 156 (165)
Q Consensus 86 tD~s~~~~~~~k~---~~~~~~~~~~~~~~~~~~k~~~ff~i~HyaG~V~~---~~~~~~~d~~v~~~i~~~~~~~~ 156 (165)
+|++|..++.... ..|. .| +....-|+|.||||.|.| ++++++||.+..|-+-.-++.|+
T Consensus 456 t~~~~a~KL~~~~~~~~~f~-kp----------r~~~~~f~v~hyAg~v~y~~~~fL~knrd~v~~el~~ll~~s~~ 521 (862)
T KOG0160|consen 456 TDETLAQKLYQTLKRNKRFT-KP----------RLSRTDFRVAHYAGDVTYDTEGFLEKNRDYVSDELIDLLLASDC 521 (862)
T ss_pred CcchHHHHHHHHhccCCccC-CC----------CCCcCCcccccccCccccchhhhccCCccccCHHHHhhhhhccc
Confidence 9999999875432 2221 00 011233569999999994 58999999877766555444443
No 21
>KOG0162|consensus
Probab=99.94 E-value=2e-27 Score=214.69 Aligned_cols=121 Identities=30% Similarity=0.471 Sum_probs=102.2
Q ss_pred ccccCCCchhhhHHhhhhHHHHHHHHHhhhhhhHHhhhhcCceeeeeccCCcHHHHHHhhcC-CCcccccchhhhccC--
Q psy2909 7 VQQDELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK-PNGLLCVLDDQANWS-- 83 (165)
Q Consensus 7 fe~~~~NsfEQLciNyanE~Lq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldLi~~~-p~GLl~lLDee~~~p-- 83 (165)
||+|+.||||||||||+||+||+.|++.+++.||++|.+|||.|.+|.|.||.-++|||+.| |.||+++|||.|...
T Consensus 393 FEIFe~N~FEQ~CINfVNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~At~Ha 472 (1106)
T KOG0162|consen 393 FEIFENNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCATAHA 472 (1106)
T ss_pred eeecccCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHHHhcc
Confidence 89999999999999999999999999999999999999999999999999999999999985 789999999999864
Q ss_pred --CCCCchhhHHHh---hcCCCCCCCCCCCCCcceeecCCCceeeeeecCCCccH---HHHHHHhc
Q psy2909 84 --RGNPMVSCVFWM---IKPRLFAPTPKPLNGLFEYVRKPDCLIKLELFPPPVKQ---YWLQVIRD 141 (165)
Q Consensus 84 --~~tD~s~~~~~~---~k~~~~~~~~~~~~~~~~~~~k~~~ff~i~HyaG~V~~---~~~~~~~d 141 (165)
.+.|++|++++. ..+++|.+ ..+.|+ |+||||.|.| ++-+.+||
T Consensus 473 ~~~~aDqa~~qrLn~~~~s~phF~~-------------~s~~Fv-IkHYAGdVtYdi~G~~drNrD 524 (1106)
T KOG0162|consen 473 DSEGADQALLQRLNKLFGSHPHFES-------------RSNGFV-IKHYAGDVTYDIDGFCDRNRD 524 (1106)
T ss_pred ccchhHHHHHHHHHHHhcCCCcccc-------------ccCceE-EEEeccceeeecccccccchh
Confidence 366788888753 33444432 223455 9999999995 45555555
No 22
>KOG4229|consensus
Probab=99.90 E-value=2.6e-24 Score=203.45 Aligned_cols=127 Identities=36% Similarity=0.636 Sum_probs=108.5
Q ss_pred cccccCCCchhhhHHhhhhHHHHHHHHHhhhhhhHHhhhhcCceeeeeccCCcHHHHHHhhcCCCcccccchhhhccCCC
Q psy2909 6 LVQQDELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRG 85 (165)
Q Consensus 6 lfe~~~~NsfEQLciNyanE~Lq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldLi~~~p~GLl~lLDee~~~p~~ 85 (165)
.||.+..|+|||+|||||||+||.||++++|..|+++|..|+|.|..+.|.||..|+|+|..+|.||+.+||||+.+|++
T Consensus 436 gfE~f~~nsfEq~~in~Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~fP~~ 515 (1062)
T KOG4229|consen 436 GFENFERNSFEQLCINLANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESRFPKA 515 (1062)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCcCCch
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhHHHhhc---CCCCCCCCCCCCCcceeecCCCceeeeeecCCCcc---HHHHHHHhcc
Q psy2909 86 NPMVSCVFWMIK---PRLFAPTPKPLNGLFEYVRKPDCLIKLELFPPPVK---QYWLQVIRDD 142 (165)
Q Consensus 86 tD~s~~~~~~~k---~~~~~~~~~~~~~~~~~~~k~~~ff~i~HyaG~V~---~~~~~~~~d~ 142 (165)
+|.+++.++-.. +..+...+... ...|+|.||||.|. -+++++++|.
T Consensus 516 td~tl~~k~~~q~~~~~~y~~~k~~~----------e~~f~I~Hyagkv~y~~~~flekNrD~ 568 (1062)
T KOG4229|consen 516 TDQTLLLKLNMQHGSNNLYVFPKSRV----------ETVFGITHYAGKVQYNIRGFLEKNRDT 568 (1062)
T ss_pred HHHHHHHHhhhhhhcccccccccccc----------cceeeeeeecceehhhhhhHHHhhhhh
Confidence 999999886433 23333222222 22455999999999 4566677763
No 23
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=81.40 E-value=1.1 Score=45.16 Aligned_cols=44 Identities=25% Similarity=0.154 Sum_probs=37.3
Q ss_pred CCcceeecCCCceeeeeecCCCccHHHHHHHhccccceeEEEEEcCC
Q psy2909 109 NGLFEYVRKPDCLIKLELFPPPVKQYWLQVIRDDGIAQTIIIYWNGD 155 (165)
Q Consensus 109 ~~~~~~~~k~~~ff~i~HyaG~V~~~~~~~~~d~~v~~~i~~~~~~~ 155 (165)
+.++-++.+|+......+|- +..|+..+|..||.|+||||.||=
T Consensus 626 qphyIRCIkPN~~K~p~~fD---~~mVL~QLr~~GVlE~IRIsraGF 669 (1463)
T COG5022 626 QPHYIRCIKPNEEKSPWTFD---NQMVLSQLRCCGVLETIRISRAGF 669 (1463)
T ss_pred CCceeEeeCCCcccCccccc---hHHHHHHHHhcchhhheeeccccC
Confidence 44456677888887777887 799999999999999999999994
No 24
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=55.17 E-value=7.9 Score=37.88 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=23.9
Q ss_pred CCCccHHHHHHHhccccc-----------eeEEEEEcCCcccccc
Q psy2909 128 PPPVKQYWLQVIRDDGIA-----------QTIIIYWNGDQAYNCI 161 (165)
Q Consensus 128 aG~V~~~~~~~~~d~~v~-----------~~i~~~~~~~~~~~~~ 161 (165)
.|+.-+......+|+.++ ..++|||-|||+|=.+
T Consensus 182 ~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAV 226 (928)
T PF04762_consen 182 HGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAV 226 (928)
T ss_pred CcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEE
Confidence 565555555556676655 5789999999998544
No 25
>PHA03302 envelope glycoprotein L; Provisional
Probab=31.27 E-value=16 Score=30.43 Aligned_cols=44 Identities=23% Similarity=0.251 Sum_probs=30.7
Q ss_pred CceeeeeecCC-----CccHHHHHH--HhccccceeEEEEEcC----Ccccccccc
Q psy2909 119 DCLIKLELFPP-----PVKQYWLQV--IRDDGIAQTIIIYWNG----DQAYNCIRT 163 (165)
Q Consensus 119 ~~ff~i~HyaG-----~V~~~~~~~--~~d~~v~~~i~~~~~~----~~~~~~~~~ 163 (165)
+.+| +.|-.| ++.-+++=. ++..+....+||++.| |+-|||+||
T Consensus 157 ~~iF-~EnVlGFel~pP~~~svLv~lrN~~tkt~rvVRip~~~itLFdalyN~vk~ 211 (253)
T PHA03302 157 NDIF-VENVLGFELNPPVNMSVLVALRNEATKTTRVVRIPVNSLTLFDALYNLVKT 211 (253)
T ss_pred cchh-hhcccceeecCCCceEEEEEEecCCCccceeEEeecCcchHHHHHHHHHHH
Confidence 4555 666665 333333333 3468999999999999 889999986
No 26
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=24.48 E-value=36 Score=26.34 Aligned_cols=28 Identities=36% Similarity=0.540 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHhhhhhhHHhhhhcCcee
Q psy2909 23 ANEHLQYYFNQHVFQYEQEEYNKEGIRW 50 (165)
Q Consensus 23 anE~Lq~~f~~~~f~~e~~~y~~EgI~~ 50 (165)
|++.||.||-+.-|..--++|.++||+-
T Consensus 118 AQahLq~fYa~~GFv~~~e~yledGIpH 145 (155)
T COG2153 118 AQAHLQDFYASFGFVRVGEEYLEDGIPH 145 (155)
T ss_pred hHHHHHHHHHHhCcEEcCchhhcCCCCc
Confidence 7899999999999999999999999954
No 27
>PF01801 Cytomega_gL: Cytomegalovirus glycoprotein L ; InterPro: IPR002689 Glycoprotein L from Cytomegalovirus serves a chaperone for the correct folding and surface expression of glycoprotein H (gH) []. Glycoprotein L is a member of the heterotrimeric gCIII complex of glycoprotein which also includes gH and gO and has an essential role in viral fusion [].; GO: 0016032 viral reproduction, 0019031 viral envelope
Probab=23.98 E-value=21 Score=28.98 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=21.5
Q ss_pred HhccccceeEEEEEcC----Ccccccccc
Q psy2909 139 IRDDGIAQTIIIYWNG----DQAYNCIRT 163 (165)
Q Consensus 139 ~~d~~v~~~i~~~~~~----~~~~~~~~~ 163 (165)
++..++.-.|||++++ |+.|||+|+
T Consensus 149 N~~tk~~r~VRip~~~i~LFdalyN~vk~ 177 (215)
T PF01801_consen 149 NEATKTTRPVRIPVSTITLFDALYNLVKE 177 (215)
T ss_pred cCCCcccccEEeechhhHHHHHHHHHHHH
Confidence 3468899999999999 788999986
No 28
>PF11323 DUF3125: Protein of unknown function (DUF3125); InterPro: IPR021472 This family of proteins with unknown function appears to be restricted to Staphylococcus.
Probab=22.88 E-value=32 Score=21.61 Aligned_cols=10 Identities=50% Similarity=0.604 Sum_probs=6.1
Q ss_pred CccccccccC
Q psy2909 2 FSQNLVQQDE 11 (165)
Q Consensus 2 ~~~~lfe~~~ 11 (165)
||||||-.-.
T Consensus 3 fsQnLfr~~~ 12 (50)
T PF11323_consen 3 FSQNLFRCPT 12 (50)
T ss_pred cccccccCCC
Confidence 6666665544
No 29
>PHA01079 hypothetical protein
Probab=22.22 E-value=28 Score=21.37 Aligned_cols=20 Identities=5% Similarity=-0.046 Sum_probs=17.2
Q ss_pred cHHHHHHHhccccceeEEEE
Q psy2909 132 KQYWLQVIRDDGIAQTIIIY 151 (165)
Q Consensus 132 ~~~~~~~~~d~~v~~~i~~~ 151 (165)
.+++..+.+.+++.|+|+|-
T Consensus 14 ~~~~SrL~K~~ELNE~MsI~ 33 (48)
T PHA01079 14 SYEDSRLNKRTELNENMSID 33 (48)
T ss_pred cccccccccccccccceecc
Confidence 47888899999999999984
No 30
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=20.74 E-value=56 Score=25.30 Aligned_cols=92 Identities=16% Similarity=0.186 Sum_probs=42.3
Q ss_pred HhhhhcCceeeeeccCCcHHHHHHhhcCCCc----ccccchhhhccCCCCCch------hhHHHhhcCCCCCCCCCCCCC
Q psy2909 41 EEYNKEGIRWRHIEFSDNTLCLQLVEGKPNG----LLCVLDDQANWSRGNPMV------SCVFWMIKPRLFAPTPKPLNG 110 (165)
Q Consensus 41 ~~y~~EgI~~~~i~~~dn~~~ldLi~~~p~G----Ll~lLDee~~~p~~tD~s------~~~~~~~k~~~~~~~~~~~~~ 110 (165)
.+-..+||+--+++-.-...+++||..+|.| ++.+|-+ +.|-|.|+. |+...... ..-.|-
T Consensus 7 ~eRa~~GipPlPL~a~Qt~~lielLk~~~~~~~~~lldLL~~--RV~PGVD~AA~VKA~FL~~ia~g-~~~~~~------ 77 (154)
T PF11791_consen 7 AERAALGIPPLPLNAEQTAELIELLKNPPAGEEAFLLDLLTN--RVPPGVDEAAYVKAEFLAAIAKG-EISSPL------ 77 (154)
T ss_dssp HHHHCTT-------HHHHHHHHHHHHS--TT-HHHHHHHHHH--SS--TT-HHHHHHHHHHHHHHTT-SS-BTT------
T ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHhCCCCccHHHHHHHHHh--cCCCCCChHHHHHHHHHHHHHcC-CccCCC------
Confidence 3445678876556544557789999998877 7777766 556666764 44433211 111010
Q ss_pred cceeecCCCceeeeeecCCCcc-HHHHHHH--hccccc
Q psy2909 111 LFEYVRKPDCLIKLELFPPPVK-QYWLQVI--RDDGIA 145 (165)
Q Consensus 111 ~~~~~~k~~~ff~i~HyaG~V~-~~~~~~~--~d~~v~ 145 (165)
..+......+.+..|.-+ ..-.+++ +|+.+.
T Consensus 78 ----Is~~~Av~LLGtM~GGYNV~~LI~~L~~~d~~lA 111 (154)
T PF11791_consen 78 ----ISPAEAVELLGTMLGGYNVQPLIDLLKSDDEELA 111 (154)
T ss_dssp ----B-HHHHHHHHTTS-SSTTHHHHHHGG--G-TTTH
T ss_pred ----cCHHHHHHHHhhccCCCcHHHHHHHHcCCcHHHH
Confidence 011122344777777666 6666666 455554
Done!