Query psy2909
Match_columns 165
No_of_seqs 167 out of 1091
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 20:42:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2909.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2909hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lkx_A Myosin IE heavy chain; 100.0 1.8E-37 6.2E-42 284.0 9.2 131 7-142 390-526 (697)
2 2v26_A Myosin VI; calmodulin-b 100.0 2.2E-37 7.5E-42 286.4 8.3 134 7-142 456-596 (784)
3 1w7j_A Myosin VA; motor protei 100.0 9E-37 3.1E-41 282.6 9.2 124 7-142 441-571 (795)
4 4anj_A Unconventional myosin-V 100.0 1.1E-36 3.6E-41 288.3 8.6 134 7-142 460-600 (1052)
5 1w9i_A Myosin II heavy chain; 100.0 1.4E-36 4.8E-41 280.2 9.1 125 7-142 458-591 (770)
6 4db1_A Myosin-7; S1DC, cardiac 100.0 1.8E-36 6.3E-41 279.9 8.6 128 7-142 465-600 (783)
7 1kk8_A Myosin heavy chain, str 100.0 5.2E-36 1.8E-40 278.7 7.6 130 7-142 464-601 (837)
8 2dfs_A Myosin-5A; myosin-V, in 100.0 8.9E-36 3.1E-40 283.3 8.7 124 7-142 441-571 (1080)
9 2ycu_A Non muscle myosin 2C, a 100.0 2.2E-35 7.5E-40 278.8 8.6 127 7-142 437-572 (995)
10 1g8x_A Myosin II heavy chain f 100.0 4.4E-35 1.5E-39 277.0 9.1 125 7-142 458-591 (1010)
11 1i84_S Smooth muscle myosin he 100.0 8E-35 2.7E-39 278.8 9.5 127 7-142 468-603 (1184)
12 4hg1_A Putative cytoplasmic pr 27.5 19 0.00064 27.7 0.9 21 138-158 116-136 (225)
No 1
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=100.00 E-value=1.8e-37 Score=283.96 Aligned_cols=131 Identities=27% Similarity=0.379 Sum_probs=112.4
Q ss_pred ccccCCCchhhhHHhhhhHHHHHHHHHhhhhhhHHhhhhcCceeeeeccCCcHHHHHHhhcCCCcccccchhhhccCCCC
Q psy2909 7 VQQDELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGN 86 (165)
Q Consensus 7 fe~~~~NsfEQLciNyanE~Lq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldLi~~~p~GLl~lLDee~~~p~~t 86 (165)
||.|+.||||||||||||||||++|++++|+.||++|.+|||+|..|+|.||++|+|||+++|.|||+||||||++|++|
T Consensus 390 FE~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dN~~~idLie~kp~GilslLDEec~~p~~t 469 (697)
T 1lkx_A 390 FEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAKST 469 (697)
T ss_dssp CCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHHHHHHHHHSTTCC
T ss_pred ccccCcCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCHHHHHHHhcccCChhhhhHHhhCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHhhc---CCCCCCCCCCCCCcceeecCCCceeeeeecCCCcc---HHHHHHHhcc
Q psy2909 87 PMVSCVFWMIK---PRLFAPTPKPLNGLFEYVRKPDCLIKLELFPPPVK---QYWLQVIRDD 142 (165)
Q Consensus 87 D~s~~~~~~~k---~~~~~~~~~~~~~~~~~~~k~~~ff~i~HyaG~V~---~~~~~~~~d~ 142 (165)
|++|++++..+ +..|.....+.. ...+...|+|+||||.|. .+|+++|+|.
T Consensus 470 D~~f~~kl~~~~~~~~~f~~~~~~~~-----k~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~ 526 (697)
T 1lkx_A 470 DQTFLDSICKQFEKNPHLQSYVVSKD-----RSIGDTCFRLKHYAGDVTYDVRGFLDKNKDT 526 (697)
T ss_dssp HHHHHHHHHHHSSSSTTEECTTTSCC-----TTSCTTEEEEEETTEEEEEECTTHHHHHHCC
T ss_pred hHHHHHHHHHHhcCCCccccCCCCCC-----CccccCceeeeeeeeEEEEccCChhhhhccc
Confidence 99999987543 344432110000 011245566999999999 8999999986
No 2
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=100.00 E-value=2.2e-37 Score=286.44 Aligned_cols=134 Identities=28% Similarity=0.402 Sum_probs=111.7
Q ss_pred ccccCCCchhhhHHhhhhHHHHHHHHHhhhhhhHHhhhhcCceeeeeccCCcHHHHHHhhcCCCcccccchhhhccCCCC
Q psy2909 7 VQQDELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGN 86 (165)
Q Consensus 7 fe~~~~NsfEQLciNyanE~Lq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldLi~~~p~GLl~lLDee~~~p~~t 86 (165)
||.|+.||||||||||||||||++|++++|+.||++|.+|||+|..|+|.||++|+|||+++|.|||+||||||++|++|
T Consensus 456 FE~f~~NsFEQlcINyaNEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~DN~~~idLie~kp~GIlslLDEe~~~p~~t 535 (784)
T 2v26_A 456 FEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPS 535 (784)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSCC
T ss_pred cccCCcCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCcccccccChHHHHHHHhhccccHHHHHHHHhcCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHhhcCC---CC-CCCCCCCCCcceeecCCCceeeeeecCCCcc---HHHHHHHhcc
Q psy2909 87 PMVSCVFWMIKPR---LF-APTPKPLNGLFEYVRKPDCLIKLELFPPPVK---QYWLQVIRDD 142 (165)
Q Consensus 87 D~s~~~~~~~k~~---~~-~~~~~~~~~~~~~~~k~~~ff~i~HyaG~V~---~~~~~~~~d~ 142 (165)
|++|++++..++. .| .|.++..... ....+...|+|+||||.|. .+|+++|+|.
T Consensus 536 D~~f~~kl~~~~~~~~~~~~p~~~~~~~~--~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~ 596 (784)
T 2v26_A 536 DQHFTSAVHQKHKDHFRLSIPRKSKLAIH--RNIRDDEGFIIRHFAGAVCYETTQFVEKNNDA 596 (784)
T ss_dssp HHHHHHHHHHHTTTCTTEECGGGCSSGGG--TTSCTTSEEEEEETTEEEEEECTTHHHHTBCC
T ss_pred hHHHHHHHHHHhCCCcccccCCCcccccc--ccccCCCceEeeecCccEeeeccCHHHhccch
Confidence 9999998755432 22 1111111000 0001234566999999999 7999999985
No 3
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=100.00 E-value=9e-37 Score=282.59 Aligned_cols=124 Identities=39% Similarity=0.598 Sum_probs=109.8
Q ss_pred ccccCCCchhhhHHhhhhHHHHHHHHHhhhhhhHHhhhhcCceeeeeccCCcHHHHHHhhcCCCcccccchhhhccCCCC
Q psy2909 7 VQQDELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGN 86 (165)
Q Consensus 7 fe~~~~NsfEQLciNyanE~Lq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldLi~~~p~GLl~lLDee~~~p~~t 86 (165)
||.|+.||||||||||||||||++|++++|+.||++|.+|||+|..|+|.||++|||||+++ .|||+||||||++|++|
T Consensus 441 FE~f~~NsFEQlcINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~DN~~~idLie~~-~GIlslLDEec~~p~~t 519 (795)
T 1w7j_A 441 FETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKGS 519 (795)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCCCCCHHHHHHHHST-TSHHHHHHHHHTSTTCC
T ss_pred ccccCcCCHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCcccccCccccHHHHHHHHhc-CCHHHhhhhhccCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999987 89999999999999999
Q ss_pred CchhhHHHhh----cCCCCCCCCCCCCCcceeecCCCceeeeeecCCCcc---HHHHHHHhcc
Q psy2909 87 PMVSCVFWMI----KPRLFAPTPKPLNGLFEYVRKPDCLIKLELFPPPVK---QYWLQVIRDD 142 (165)
Q Consensus 87 D~s~~~~~~~----k~~~~~~~~~~~~~~~~~~~k~~~ff~i~HyaG~V~---~~~~~~~~d~ 142 (165)
|++|++++.. +++.|... +.....|+|+||||.|. .+|+++|+|.
T Consensus 520 D~~f~~kl~~~~~~~~~~f~~p-----------~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~ 571 (795)
T 1w7j_A 520 DDTWAQKLYNTHLNKCALFEKP-----------RLSNKAFIIKHFADKVEYQCEGFLEKNKDT 571 (795)
T ss_dssp HHHHHHHHHHHHTTTCTTEECC-----------TTCSSEEEEECSSCEEEEECTTHHHHHHCC
T ss_pred hHHHHHHHHHHhhccCCccccC-----------CCCCCceEEEecceEEEEechhHHhhcccc
Confidence 9999998753 33333211 11234566999999999 8999999986
No 4
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=100.00 E-value=1.1e-36 Score=288.30 Aligned_cols=134 Identities=28% Similarity=0.411 Sum_probs=112.2
Q ss_pred ccccCCCchhhhHHhhhhHHHHHHHHHhhhhhhHHhhhhcCceeeeeccCCcHHHHHHhhcCCCcccccchhhhccCCCC
Q psy2909 7 VQQDELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGN 86 (165)
Q Consensus 7 fe~~~~NsfEQLciNyanE~Lq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldLi~~~p~GLl~lLDee~~~p~~t 86 (165)
||.|+.|||||||||||||+||++|++++|+.||++|.+|||+|..|+|.||++|||||+++|.|||+||||||++|++|
T Consensus 460 FE~f~~NsFEQLCINyaNEkLQq~Fn~~vF~~EqeeY~~EgI~w~~I~f~DN~~~idLie~kp~GIl~lLDEe~~~p~~t 539 (1052)
T 4anj_A 460 FEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPS 539 (1052)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSCC
T ss_pred CcccccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCcccCCcCCcHHHHHHHHcCcccHHHHHHHHhcCCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHhhcCC---CCC-CCCCCCCCcceeecCCCceeeeeecCCCcc---HHHHHHHhcc
Q psy2909 87 PMVSCVFWMIKPR---LFA-PTPKPLNGLFEYVRKPDCLIKLELFPPPVK---QYWLQVIRDD 142 (165)
Q Consensus 87 D~s~~~~~~~k~~---~~~-~~~~~~~~~~~~~~k~~~ff~i~HyaG~V~---~~~~~~~~d~ 142 (165)
|++|++++..++. .|. |..+.... . ........|+|+||||.|. .+|+++|+|.
T Consensus 540 D~~f~~kl~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~F~I~HyAG~V~Y~~~gfleKNrD~ 600 (1052)
T 4anj_A 540 DQHFTSAVHQKHKDHFRLSIPRKSKLAI-H-RNIRDDEGFIIRHFAGAVCYETTQFVEKNNDA 600 (1052)
T ss_dssp HHHHHHHHHHTTTTCTTEECGGGCSCST-T-TTCCTTSEEEEEETTEEEEEECTTHHHHHBCC
T ss_pred HHHHHHHHHHHhccCccccCCccccccc-c-cccCCCCCeEEEcCCccEEEecCChhhhcccc
Confidence 9999999865532 221 11111000 0 0011234466999999999 7999999986
No 5
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=100.00 E-value=1.4e-36 Score=280.17 Aligned_cols=125 Identities=35% Similarity=0.620 Sum_probs=109.4
Q ss_pred ccccCCCchhhhHHhhhhHHHHHHHHHhhhhhhHHhhhhcCceeeeecc-CCcHHHHHHhhcC-CCcccccchhhhccCC
Q psy2909 7 VQQDELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK-PNGLLCVLDDQANWSR 84 (165)
Q Consensus 7 fe~~~~NsfEQLciNyanE~Lq~~f~~~~f~~e~~~y~~EgI~~~~i~~-~dn~~~ldLi~~~-p~GLl~lLDee~~~p~ 84 (165)
||+|+.||||||||||||||||++|++++|+.||++|.+|||+|..|+| .||++|||||+++ |.|||+||||||++|+
T Consensus 458 FE~F~~NsFEQlCINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek~~p~GilslLDEec~~p~ 537 (770)
T 1w9i_A 458 FEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPN 537 (770)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGGGHHHHHHHHCTTTTCHHHHHHHHHSSSS
T ss_pred ccccccCCHHHHHHHhhHHHHHHHHHhhhhHHHHHHhhccCCCceeeccccCcHHHHHHHhCCCCCchhhhhhhhhCCCC
Confidence 8999999999999999999999999999999999999999999999999 5999999999984 9999999999999999
Q ss_pred CCCchhhHHHhh----cCCCCCCCCCCCCCcceeecCCCceeeeeecCCCcc---HHHHHHHhcc
Q psy2909 85 GNPMVSCVFWMI----KPRLFAPTPKPLNGLFEYVRKPDCLIKLELFPPPVK---QYWLQVIRDD 142 (165)
Q Consensus 85 ~tD~s~~~~~~~----k~~~~~~~~~~~~~~~~~~~k~~~ff~i~HyaG~V~---~~~~~~~~d~ 142 (165)
+||++|+++++. +++.|.. | +.+...|+|+||||.|. .+|+++|+|+
T Consensus 538 ~tD~~f~~kL~~~~~~~~~~f~~-p----------~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~ 591 (770)
T 1w9i_A 538 ATDNTLITKLHSHFSKKNAKYEE-P----------RFSKTEFGVTHYAGQVMYEIQDWLEKNKDP 591 (770)
T ss_dssp CCHHHHHHHHHHHHTTTSTTEEC-C----------SSCSSEEEEEETTEEEEEECTTHHHHHHCC
T ss_pred CChHHHHHHHHHHhcCCCCCccC-C----------CCCCCceEeeccCccccccccChhhhccCc
Confidence 999999998643 3333321 1 11124566999999999 8999999986
No 6
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=100.00 E-value=1.8e-36 Score=279.94 Aligned_cols=128 Identities=37% Similarity=0.686 Sum_probs=108.2
Q ss_pred ccccCCCchhhhHHhhhhHHHHHHHHHhhhhhhHHhhhhcCceeeeecc-CCcHHHHHHhhcCCCcccccchhhhccCCC
Q psy2909 7 VQQDELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQANWSRG 85 (165)
Q Consensus 7 fe~~~~NsfEQLciNyanE~Lq~~f~~~~f~~e~~~y~~EgI~~~~i~~-~dn~~~ldLi~~~p~GLl~lLDee~~~p~~ 85 (165)
||+|+.||||||||||||||||++|++++|+.||++|.+|||+|..|+| .||++|+|||++ |.|||+||||||++|++
T Consensus 465 FE~f~~NsFEQlCINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~~Dn~~~idLiek-p~Gil~lLDEec~~p~~ 543 (783)
T 4db1_A 465 FEIFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEK-PMGIMSILEEECMFPKA 543 (783)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCGGGGGHHHHHHHHS-TTSHHHHHCC-TTCTTC
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcccccccCChHHHHHHHhC-CCchHhhhhHHhcCCCC
Confidence 8999999999999999999999999999999999999999999999999 599999999996 89999999999999999
Q ss_pred CCchhhHHHh----hcCCCCCCCCCCCCCcceeecCCCceeeeeecCCCcc---HHHHHHHhcc
Q psy2909 86 NPMVSCVFWM----IKPRLFAPTPKPLNGLFEYVRKPDCLIKLELFPPPVK---QYWLQVIRDD 142 (165)
Q Consensus 86 tD~s~~~~~~----~k~~~~~~~~~~~~~~~~~~~k~~~ff~i~HyaG~V~---~~~~~~~~d~ 142 (165)
||++|++++. ++++.|.. ++..++ ++...|+|+||||.|. .+|+++|+|+
T Consensus 544 tD~tf~~kl~~~~~~~~~~f~~-~~~~k~------~~~~~F~I~HyAG~V~Y~~~gfleKNkD~ 600 (783)
T 4db1_A 544 TDMTFKAKLFDNHLGKSANFQK-PRNIKG------KPEAHFSLIHYAGIVDYNIIGWLQKNKDP 600 (783)
T ss_dssp CHHHHHHHHHHHHTTTCTTEEC-CCC----------C-CCEEEEETTEEEEECCTTHHHHHHCC
T ss_pred CHHHHHHHHHHHhcCCCCCccC-CCCCCC------CCCCCeEEeCcCCceEEeCcChhhhcccc
Confidence 9999999874 33444421 111111 2344566999999999 7999999986
No 7
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=100.00 E-value=5.2e-36 Score=278.69 Aligned_cols=130 Identities=34% Similarity=0.608 Sum_probs=109.9
Q ss_pred ccccCCCchhhhHHhhhhHHHHHHHHHhhhhhhHHhhhhcCceeeeecc-CCcHHHHHHhhcCCCcccccchhhhccCCC
Q psy2909 7 VQQDELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQANWSRG 85 (165)
Q Consensus 7 fe~~~~NsfEQLciNyanE~Lq~~f~~~~f~~e~~~y~~EgI~~~~i~~-~dn~~~ldLi~~~p~GLl~lLDee~~~p~~ 85 (165)
||.|+.||||||||||||||||++|++++|+.||++|.+|||+|..|+| .||++|||||++ |.|||+||||||++|++
T Consensus 464 FE~f~~NsFEQlcINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek-p~GIlslLDEec~~p~~ 542 (837)
T 1kk8_A 464 FEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEK-PMGILSILEEECMFPKA 542 (837)
T ss_dssp CCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHS-TTSHHHHHHHHTTCTTC
T ss_pred ccccccccHHHHHHHHhhHHHHHHHHHhhhHHHHHHhhhcCCceeecccccCHHHHHHHHhc-CCcHHHHHHHHhcCCCC
Confidence 8999999999999999999999999999999999999999999999999 599999999996 89999999999999999
Q ss_pred CCchhhHHHh----hcCCCCCCCCCCCCCcceeecCCCceeeeeecCCCcc---HHHHHHHhcc
Q psy2909 86 NPMVSCVFWM----IKPRLFAPTPKPLNGLFEYVRKPDCLIKLELFPPPVK---QYWLQVIRDD 142 (165)
Q Consensus 86 tD~s~~~~~~----~k~~~~~~~~~~~~~~~~~~~k~~~ff~i~HyaG~V~---~~~~~~~~d~ 142 (165)
||++|+++++ ++++.|... +... ........|+|+||||.|. .+|+++|+|+
T Consensus 543 tD~tf~~kl~~~~~~~~~~f~~p-~~~~----~k~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~ 601 (837)
T 1kk8_A 543 DDKSFQDKLYQNHMGKNRMFTKP-GKPT----RPNQGPAHFELHHYAGNVPYSITGWLEKNKDP 601 (837)
T ss_dssp CHHHHHHHHHHHHTTTCSSEECC-CSCS----STTCCCCSEEEEETTEEEEECCSSHHHHHSCC
T ss_pred ChHHHHHHHHHHhcCCCcCccCC-Cccc----cccccCCceEEeeccCcccccHHHHHHhcccc
Confidence 9999999853 344444211 1110 0001244566999999999 7899999986
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=100.00 E-value=8.9e-36 Score=283.30 Aligned_cols=124 Identities=40% Similarity=0.618 Sum_probs=109.6
Q ss_pred ccccCCCchhhhHHhhhhHHHHHHHHHhhhhhhHHhhhhcCceeeeeccCCcHHHHHHhhcCCCcccccchhhhccCCCC
Q psy2909 7 VQQDELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGN 86 (165)
Q Consensus 7 fe~~~~NsfEQLciNyanE~Lq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldLi~~~p~GLl~lLDee~~~p~~t 86 (165)
||.|+.|||||||||||||+||++|++++|+.||++|.+|||+|..|+|.||++|||||+++ .|||+||||||++|++|
T Consensus 441 FE~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dn~~~idlie~~-~Gil~lLdee~~~p~~t 519 (1080)
T 2dfs_A 441 FETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKGS 519 (1080)
T ss_dssp CCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCCCCCCCHHHHHHHHST-TSHHHHHHHHTTSTTCC
T ss_pred ccccCcCCHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhcCCccccccccccHHHHHHHhcC-CceeeeccccccCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999987 89999999999999999
Q ss_pred CchhhHHHhh----cCCCCCCCCCCCCCcceeecCCCceeeeeecCCCcc---HHHHHHHhcc
Q psy2909 87 PMVSCVFWMI----KPRLFAPTPKPLNGLFEYVRKPDCLIKLELFPPPVK---QYWLQVIRDD 142 (165)
Q Consensus 87 D~s~~~~~~~----k~~~~~~~~~~~~~~~~~~~k~~~ff~i~HyaG~V~---~~~~~~~~d~ 142 (165)
|++|++++.. +++.|.. | +.+...|+|+||||.|. .+|+++|+|+
T Consensus 520 D~~f~~kl~~~~~~~~~~f~~-p----------~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~ 571 (1080)
T 2dfs_A 520 DDTWAQKLYNTHLNKCALFEK-P----------RLSNKAFIIKHFADKVEYQCEGFLEKNKDT 571 (1080)
T ss_dssp HHHHHHHHHHHHBTTBSSEEC-C----------TTCSSEEEEECSSCEEEEECTTHHHHHBCC
T ss_pred hHHHHHHHHHHhhcCCCCccC-C----------CCCCCceEEEecceEEEEehhhHHHhcccc
Confidence 9999998753 3333321 1 11234566999999999 8999999985
No 9
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=100.00 E-value=2.2e-35 Score=278.81 Aligned_cols=127 Identities=33% Similarity=0.564 Sum_probs=110.0
Q ss_pred ccccCCCchhhhHHhhhhHHHHHHHHHhhhhhhHHhhhhcCceeeeecc-CCcHHHHHHhhc--CCCcccccchhhhccC
Q psy2909 7 VQQDELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG--KPNGLLCVLDDQANWS 83 (165)
Q Consensus 7 fe~~~~NsfEQLciNyanE~Lq~~f~~~~f~~e~~~y~~EgI~~~~i~~-~dn~~~ldLi~~--~p~GLl~lLDee~~~p 83 (165)
||.|+.|||||||||||||+||++|++++|+.||++|.+|||+|..|+| .||++|||||++ +|.|||+||||||++|
T Consensus 437 FE~f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~p~Gil~lLdee~~~p 516 (995)
T 2ycu_A 437 FEIFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPGLLALLDEECWFP 516 (995)
T ss_dssp BCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHHHHCCSSSCCHHHHHHHSSSST
T ss_pred ccccccchHHHHHHHhhHHHHHHHHHHhhhHHHHHHHhccCCCccccccccChHHHHHHHhccCCCCchhhhhHHHhcCC
Confidence 8999999999999999999999999999999999999999999999999 699999999998 4899999999999999
Q ss_pred CCCCchhhHHHhhc---CCCCCCCCCCCCCcceeecCCCceeeeeecCCCcc---HHHHHHHhcc
Q psy2909 84 RGNPMVSCVFWMIK---PRLFAPTPKPLNGLFEYVRKPDCLIKLELFPPPVK---QYWLQVIRDD 142 (165)
Q Consensus 84 ~~tD~s~~~~~~~k---~~~~~~~~~~~~~~~~~~~k~~~ff~i~HyaG~V~---~~~~~~~~d~ 142 (165)
++||++|++++..+ ++.|.. |+. .++...|+|+||||.|. .+|+++|+|+
T Consensus 517 ~~tD~~f~~kl~~~~~~~~~f~~-~~~--------~~~~~~F~i~HyAG~V~Y~~~gfleKN~D~ 572 (995)
T 2ycu_A 517 KATDKSFVEKVAQEQGGHPKFQR-PRH--------LRDQADFSVLHYAGKVDYKANEWLMKNMDP 572 (995)
T ss_dssp TCCHHHHHHHHHHHHTTSTTEEC-CCT--------TTCCSSEEEEETTEEEEECCTTHHHHHHCC
T ss_pred CCchHHHHHHHHHhcCCCCCccc-CCc--------cCCCCeeEEECCCCCccccccchhhhcccc
Confidence 99999999986543 333321 110 02234566999999999 8899999986
No 10
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=100.00 E-value=4.4e-35 Score=276.98 Aligned_cols=125 Identities=35% Similarity=0.614 Sum_probs=109.2
Q ss_pred ccccCCCchhhhHHhhhhHHHHHHHHHhhhhhhHHhhhhcCceeeeecc-CCcHHHHHHhhc-CCCcccccchhhhccCC
Q psy2909 7 VQQDELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPNGLLCVLDDQANWSR 84 (165)
Q Consensus 7 fe~~~~NsfEQLciNyanE~Lq~~f~~~~f~~e~~~y~~EgI~~~~i~~-~dn~~~ldLi~~-~p~GLl~lLDee~~~p~ 84 (165)
||.|+.|||||||||||||+||++|++++|+.||++|.+|||+|..|+| .||++|||||++ +|.|||+||||||++|+
T Consensus 458 FE~f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~~Gil~lLdee~~~p~ 537 (1010)
T 1g8x_A 458 FEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPN 537 (1010)
T ss_dssp CCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCCSHHHHHHHHCTTTTCHHHHHHHHTTSSS
T ss_pred cccCCcCcHHHHHHHhhhHHHHHHHHHHhhHHHHHHhhccCCCccccccccChHHHHHHHhcCCCCeeehhhhHHhCCCC
Confidence 8999999999999999999999999999999999999999999999999 499999999998 49999999999999999
Q ss_pred CCCchhhHHHhh----cCCCCCCCCCCCCCcceeecCCCceeeeeecCCCcc---HHHHHHHhcc
Q psy2909 85 GNPMVSCVFWMI----KPRLFAPTPKPLNGLFEYVRKPDCLIKLELFPPPVK---QYWLQVIRDD 142 (165)
Q Consensus 85 ~tD~s~~~~~~~----k~~~~~~~~~~~~~~~~~~~k~~~ff~i~HyaG~V~---~~~~~~~~d~ 142 (165)
+||++|++++.. +++.|.. | +.+...|+|+||||.|. .+|+++|+|+
T Consensus 538 ~td~~f~~kl~~~~~~~~~~f~~-~----------~~~~~~F~i~HyAG~V~Y~~~gfleKN~D~ 591 (1010)
T 1g8x_A 538 ATDNTLITKLHSHFSKKNAKYEE-P----------RFSKTEFGVTHYAGQVMYEIQDWLEKNKDP 591 (1010)
T ss_dssp CCHHHHHHHHHHHHTTTCTTEEC-C----------TTCSSEEEEEETTEEEEEECTTHHHHHHCC
T ss_pred CChHHHHHHHHHHhcCCCCCccc-C----------CCCCCCEEEeeeceEEEEeecCcccccccc
Confidence 999999998643 3333321 1 11123566999999999 8899999986
No 11
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=100.00 E-value=8e-35 Score=278.84 Aligned_cols=127 Identities=34% Similarity=0.567 Sum_probs=108.8
Q ss_pred ccccCCCchhhhHHhhhhHHHHHHHHHhhhhhhHHhhhhcCceeeeecc-CCcHHHHHHhhcC--CCcccccchhhhccC
Q psy2909 7 VQQDELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK--PNGLLCVLDDQANWS 83 (165)
Q Consensus 7 fe~~~~NsfEQLciNyanE~Lq~~f~~~~f~~e~~~y~~EgI~~~~i~~-~dn~~~ldLi~~~--p~GLl~lLDee~~~p 83 (165)
||+|+.|||||||||||||+||++|++++|+.||++|.+|||+|..|+| .||++|||||+++ |.|||+||||||++|
T Consensus 468 FE~f~~NsfeQlciNy~nEkLq~~f~~~~f~~eq~ey~~Egi~~~~i~~~~dn~~~~~lie~~~~~~Gil~lLdee~~~p 547 (1184)
T 1i84_S 468 FEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFP 547 (1184)
T ss_dssp CCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCSCCCCCCCCCCHHHHHTTSCCSSSCCHHHHHHHTTSCT
T ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCccccccCCCcHHHHHHHhCCCCCCCchhhhhhhhCCC
Confidence 8999999999999999999999999999999999999999999999999 5999999999963 349999999999999
Q ss_pred CCCCchhhHHHhhcC---CCCCCCCCCCCCcceeecCCCceeeeeecCCCcc---HHHHHHHhcc
Q psy2909 84 RGNPMVSCVFWMIKP---RLFAPTPKPLNGLFEYVRKPDCLIKLELFPPPVK---QYWLQVIRDD 142 (165)
Q Consensus 84 ~~tD~s~~~~~~~k~---~~~~~~~~~~~~~~~~~~k~~~ff~i~HyaG~V~---~~~~~~~~d~ 142 (165)
++||.+|++++...+ +.|.. |+. .+....|+|.||||.|. .+|+++|+|+
T Consensus 548 ~~td~~~~~kl~~~~~~~~~~~~-~~~--------~~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~ 603 (1184)
T 1i84_S 548 KATDTSFVEKLIQEQGNHAKFQK-SKQ--------LKDKTEFCILHYAGKVTYNASAWLTKNMDP 603 (1184)
T ss_dssp TCCHHHHHHHHHHHTSSCTTEEE-CSS--------CTTTCEEEEECSSCEEEEECTTHHHHHHCC
T ss_pred CCChHHHHHHHHHHhCCCCCccC-CCC--------CCCCCcEEEECCCceEEeccCCchhhccCc
Confidence 999999999876443 22211 000 01244566999999999 8899999986
No 12
>4hg1_A Putative cytoplasmic protein; PSI-biology, MCSG, midwest center for structural genomics; HET: MLY MSE MLZ PG4; 1.75A {Salmonella enterica subsp} PDB: 4hg1_C* 4hg1_B*
Probab=27.49 E-value=19 Score=27.72 Aligned_cols=21 Identities=33% Similarity=0.256 Sum_probs=18.5
Q ss_pred HHhccccceeEEEEEcCCccc
Q psy2909 138 VIRDDGIAQTIIIYWNGDQAY 158 (165)
Q Consensus 138 ~~~d~~v~~~i~~~~~~~~~~ 158 (165)
++.||.++.-|||+-+|||+.
T Consensus 116 WnddP~LPALirI~H~GDQ~i 136 (225)
T 4hg1_A 116 WSNDPRLPALIRIDHVGDQAI 136 (225)
T ss_dssp BCCCTTCBEEEEECCSSSSEE
T ss_pred ccCCCCCcceEEeccCCCceE
Confidence 355899999999999999985
Done!