RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2909
(165 letters)
>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins. Myosin
IX is a processive single-headed motor, which might play
a role in signalling. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 692
Score = 126 bits (318), Expect = 2e-34
Identities = 44/71 (61%), Positives = 55/71 (77%)
Query: 15 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 74
FEQLCINYANE LQYYFNQH+F+ EQEEY EGI W +IE++DN C+QL KP GLL
Sbjct: 395 FEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLY 454
Query: 75 VLDDQANWSRG 85
+LD+++N+
Sbjct: 455 LLDEESNFPHA 465
>gnl|CDD|214580 smart00242, MYSc, Myosin. Large ATPases. ATPase; molecular motor.
Muscle contraction consists of a cyclical interaction
between myosin and actin. The core of the myosin
structure is similar in fold to that of kinesin.
Length = 677
Score = 122 bits (308), Expect = 8e-33
Identities = 41/65 (63%), Positives = 51/65 (78%)
Query: 15 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 74
FEQLCINYANE LQ +FNQHVF+ EQEEY +EGI W I+F DN C+ L+E KP G+L
Sbjct: 387 FEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILS 446
Query: 75 VLDDQ 79
+LD++
Sbjct: 447 LLDEE 451
>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 679
Score = 113 bits (286), Expect = 5e-30
Identities = 41/65 (63%), Positives = 51/65 (78%)
Query: 15 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 74
FEQLCINYANE LQ +FNQHVF+ EQEEY +EGI W I+F+DN + L+E KP GLL
Sbjct: 380 FEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLS 439
Query: 75 VLDDQ 79
+LD++
Sbjct: 440 LLDEE 444
>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI
myosin, involved in organelle transport. This catalytic
(head) domain has ATPase activity and belongs to the
larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 674
Score = 108 bits (272), Expect = 4e-28
Identities = 38/64 (59%), Positives = 46/64 (71%)
Query: 15 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 74
FEQ CIN NE LQ +FNQHVF+ EQEEY KE I W +IEF DN L L+E KP G++
Sbjct: 385 FEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIA 444
Query: 75 VLDD 78
+LD+
Sbjct: 445 LLDE 448
>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins.
Myosins in this group have been associated with
functions in sensory systems such as vision and hearing.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 671
Score = 107 bits (269), Expect = 1e-27
Identities = 37/71 (52%), Positives = 53/71 (74%)
Query: 15 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 74
FEQLCIN+ANE+LQ +F QH+F+ EQEEYN E I W+HIEF DN L L+ KP ++
Sbjct: 380 FEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMS 439
Query: 75 VLDDQANWSRG 85
++D+++ + +G
Sbjct: 440 LIDEESKFPKG 450
>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain).
Length = 679
Score = 107 bits (269), Expect = 1e-27
Identities = 38/68 (55%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
Query: 15 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGLL 73
FEQLCINYANE LQ +FN H+F+ EQEEY +EGI W I++ DN C+ L+E KP G+L
Sbjct: 381 FEQLCINYANEKLQQFFNHHMFKLEQEEYVREGIAWTFIDYGLDNQACIDLIEKKPPGIL 440
Query: 74 CVLDDQAN 81
+LD++
Sbjct: 441 SLLDEECR 448
>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins. Myosins
V transport a variety of intracellular cargo
processively along actin filaments, such as membraneous
organelles and mRNA. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 691
Score = 106 bits (266), Expect = 3e-27
Identities = 54/109 (49%), Positives = 63/109 (57%), Gaps = 10/109 (9%)
Query: 11 ELFR---FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG 67
E F FEQ CINYANE LQ FNQHVF+ EQEEY KEGI W I+F DN C+ L+E
Sbjct: 379 ETFEKNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIES 438
Query: 68 KPNGLLCVLDDQANWSRGNPMVSCVFWMIKPRLFAPTPKPLNGLFEYVR 116
K G+L +LD++ R P S W K L+ PK N FE R
Sbjct: 439 KL-GILSLLDEE---CR-LPKGSDESWAQK--LYNKLPKKKNPHFEKPR 480
>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins. In
vertebrates, myosin XV appears to be expressed in
sensory tissue and play a role in hearing. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 102 bits (255), Expect = 7e-26
Identities = 39/70 (55%), Positives = 50/70 (71%)
Query: 15 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 74
FEQLCINYANE+LQY FN+ VFQ EQEEY +E + W I F+DN + L+ KP G+L
Sbjct: 379 FEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILR 438
Query: 75 VLDDQANWSR 84
+LDDQ + +
Sbjct: 439 ILDDQCCFPQ 448
>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type
VIII myosins, a subgroup which has been associated with
endocytosis, cytokinesis, cell-to-cell coupling and
gating at plasmodesmata. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 101 bits (253), Expect = 2e-25
Identities = 39/71 (54%), Positives = 51/71 (71%)
Query: 15 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 74
FEQ CINYANE LQ +FN+H+F+ EQEEY ++GI W +EF DN CL L E KP GLL
Sbjct: 383 FEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLS 442
Query: 75 VLDDQANWSRG 85
+LD+++ +
Sbjct: 443 LLDEESTFPNA 453
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 99.8 bits (249), Expect = 6e-25
Identities = 39/67 (58%), Positives = 50/67 (74%), Gaps = 1/67 (1%)
Query: 15 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK-PNGLL 73
FEQLCINY NE LQ +FNQH+F+ EQEEY KEGI W I++ DN C+ L+E K P G+L
Sbjct: 446 FEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGIL 505
Query: 74 CVLDDQA 80
+LD++
Sbjct: 506 SLLDEEC 512
>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins.
Myosin III has been shown to play a role in the vision
process in insects and in hearing in mammals. Myosin
III, an unconventional myosin, does not form dimers.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 653
Score = 91.4 bits (227), Expect = 4e-22
Identities = 36/71 (50%), Positives = 50/71 (70%)
Query: 15 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 74
FEQLCIN ANE +QYYFNQH+F +EQ+EY EG+ R +E+ DN L + KP GLL
Sbjct: 391 FEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLA 450
Query: 75 VLDDQANWSRG 85
+LD+++ + +
Sbjct: 451 LLDEESRFPQA 461
>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins. Myosin
II mediates cortical contraction in cell motility, and
is the motor in smooth and skeletal muscle. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 693
Score = 90.7 bits (226), Expect = 9e-22
Identities = 37/73 (50%), Positives = 48/73 (65%), Gaps = 4/73 (5%)
Query: 11 ELFR---FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVE 66
E+F FEQLCINY NE LQ +FN H+F EQEEY +EGI W I+F D + L+E
Sbjct: 385 EIFDFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIE 444
Query: 67 GKPNGLLCVLDDQ 79
P G+L +LD++
Sbjct: 445 KNPMGILSLLDEE 457
>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins. Myosin I
generates movement at the leading edge in cell motility,
and class I myosins have been implicated in phagocytosis
and vesicle transport. Myosin I, an unconventional
myosin, does not form dimers. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the plus
end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 674
Score = 88.4 bits (220), Expect = 5e-21
Identities = 33/65 (50%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 15 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK-PNGLL 73
FEQ CINY NE LQ F + + EQEEY +EGI+W IE+ +N + L+EGK P G+
Sbjct: 384 FEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIF 443
Query: 74 CVLDD 78
+LDD
Sbjct: 444 SILDD 448
>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins. Myosin
VI is a monomeric myosin, which moves towards the
minus-end of actin filaments, in contrast to most other
myosins. It has been implicated in endocytosis,
secretion, and cell migration. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the
minus end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 717
Score = 84.5 bits (209), Expect = 1e-19
Identities = 30/66 (45%), Positives = 44/66 (66%)
Query: 15 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 74
FEQ CINY NE LQ +FN+ + + EQE Y +EG+ + + DN C+ L+E K NG+L
Sbjct: 415 FEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILD 474
Query: 75 VLDDQA 80
+LD++
Sbjct: 475 ILDEEN 480
>gnl|CDD|240229 PTZ00014, PTZ00014, myosin-A; Provisional.
Length = 821
Score = 58.5 bits (142), Expect = 1e-10
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 16 EQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 75
EQL IN NE LQ F VF+ E + Y EGI +E++ N + L+ GK +L +
Sbjct: 481 EQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSI 540
Query: 76 LDDQ 79
L+DQ
Sbjct: 541 LEDQ 544
>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 767
Score = 40.2 bits (94), Expect = 2e-04
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 15 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 74
FE+LC NY E LQ F+ F E Y +EG+ +EF L E P +
Sbjct: 397 FEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVE---VEFD-------LAEPSPGTTVA 446
Query: 75 VLD 77
++D
Sbjct: 447 LVD 449
>gnl|CDD|224403 COG1486, CelF, Alpha-galactosidases/6-phospho-beta-glucosidases,
family 4 of glycosyl hydrolases [Carbohydrate transport
and metabolism].
Length = 442
Score = 29.9 bits (68), Expect = 0.63
Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 8/79 (10%)
Query: 3 SQNLVQQD----ELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIR---WRHIEF 55
+N Q ++F + ++ H YY+ + + + +E K G R E
Sbjct: 231 PENKNIQSPVWIDMFLKYGYPVLPSSYHRYYYYPYDMKEKKPDEIEKFGTRANEVMKREK 290
Query: 56 SDNTLCLQ-LVEGKPNGLL 73
L + ++ KP L
Sbjct: 291 ELFELYKKPELKEKPEELE 309
>gnl|CDD|173277 PRK14816, PRK14816, NADH dehydrogenase subunit B; Provisional.
Length = 182
Score = 29.1 bits (65), Expect = 0.92
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 54 EFSDN----TLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVF 93
+F DN + +L EG N + VLDD NW R N + F
Sbjct: 5 DFIDNESLEKMVKELNEGGANVFVGVLDDLINWGRSNSLWPLTF 48
>gnl|CDD|183955 PRK13292, PRK13292, trifunctional NADH dehydrogenase I subunit
B/C/D; Provisional.
Length = 788
Score = 27.4 bits (61), Expect = 4.5
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 6/30 (20%)
Query: 70 NGLLCVLDDQANWSRGN---PM---VSCVF 93
N LL LDD NW R N PM +SC F
Sbjct: 6 NILLASLDDLINWGRANSLWPMFFGLSCCF 35
>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase. Proteins
in this family belong to the AMP-binding enzyme family
(pfam00501). Members activate 2,3-dihydroxybenzoate
(DHB) by ligation of AMP from ATP with the release of
pyrophosphate; many are involved in synthesis of
siderophores such as enterobactin, vibriobactin,
vulnibactin, etc. The most closely related proteine
believed to differ in function activates salicylate
rather than DHB [Transport and binding proteins, Cations
and iron carrying compounds].
Length = 526
Score = 27.1 bits (60), Expect = 5.3
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 73 LCVLDDQANWSRGNPMVSCVFWMIKPRLFAPTPKPLNGLFEYVRKPDCLIKLELFPPPVK 132
LC L N+ +P VF+ + AP P P + F + + + + PP
Sbjct: 227 LCALPAAHNYPLSSPGALGVFYAGGCVVLAPDPSPTDC-FPLIERHK--VTVTALVPPAV 283
Query: 133 QYWLQVIRD 141
W+Q
Sbjct: 284 ALWMQAASK 292
>gnl|CDD|215297 PLN02541, PLN02541, uracil phosphoribosyltransferase.
Length = 244
Score = 26.7 bits (59), Expect = 5.6
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 13/61 (21%)
Query: 83 SRGNPMVSCVFWMIKPRLFAPTPKPLNGLFEYVRKPDCLIKLELFPP-PVKQYWLQVIRD 141
SR + + V P+PK + +V PP P+ ++WL V+R+
Sbjct: 4 SRSSRLTRTVRASADAAASEPSPKAPQQMLVFV------------PPHPLIKHWLSVLRN 51
Query: 142 D 142
+
Sbjct: 52 E 52
>gnl|CDD|211347 cd02870, PseudoU_synth_RsuA_like, Pseudouridine synthases, RsuA
subfamily. Pseudouridine synthases are responsible for
the synthesis of pseudouridine from uracil in ribosomal
RNA. The RsuA subfamily includes Pseudouridine Synthase
similar to Ribosomal small subunit pseudouridine 516
synthase. Most of the proteins in this family are
bacterial proteins.
Length = 146
Score = 26.3 bits (59), Expect = 6.6
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 68 KPNGLLCVLDDQANWSRGNPMVSCVFWMIKPRLFAP 103
KP G++ + D G P V + + RLF
Sbjct: 6 KPRGVVSTVRD----PEGRPTVLDLLKDVGERLFPV 37
>gnl|CDD|225480 COG2928, COG2928, Uncharacterized conserved protein [Function
unknown].
Length = 222
Score = 26.1 bits (58), Expect = 9.3
Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 16/68 (23%)
Query: 53 IEF-SDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIKPRLFAPTPKPLNGL 111
+EF + V G+ G L + + PMV+ VF TP P +G
Sbjct: 125 VEFPRRGIWAIAFVTGEKAGELKEKEGR-------PMVA-VF-------VPTTPNPTSGF 169
Query: 112 FEYVRKPD 119
V K D
Sbjct: 170 LLLVPKED 177
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.142 0.472
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,566,907
Number of extensions: 772444
Number of successful extensions: 666
Number of sequences better than 10.0: 1
Number of HSP's gapped: 663
Number of HSP's successfully gapped: 28
Length of query: 165
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 75
Effective length of database: 6,945,742
Effective search space: 520930650
Effective search space used: 520930650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (24.8 bits)