BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy291
(149 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UGF|A Chain A, Crystal Structure Of A 6-Sst6-Sft From Pachysandra
Terminalis
pdb|3UGF|B Chain B, Crystal Structure Of A 6-Sst6-Sft From Pachysandra
Terminalis
pdb|3UGG|A Chain A, Crystal Structure Of A 6-Sst6-Sft From Pachysandra
Terminalis In Complex With 1-Kestose
pdb|3UGG|B Chain B, Crystal Structure Of A 6-Sst6-Sft From Pachysandra
Terminalis In Complex With 1-Kestose
pdb|3UGH|A Chain A, Crystal Structure Of A 6-Sst6-Sft From Pachysandra
Terminalis In Complex With 6-Kestose
pdb|3UGH|B Chain B, Crystal Structure Of A 6-Sst6-Sft From Pachysandra
Terminalis In Complex With 6-Kestose
Length = 546
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 17/99 (17%)
Query: 45 VGIDQFGNKYYENPRYFFGRNRWVIYNPD----VGLNYDGSMVPAEWYGWLHYKTDYTPC 100
ID+ YY Y G N+W NP+ +GL YD W + KT Y P
Sbjct: 241 ASIDEQQRDYYAIGTYDLGTNKWTPDNPEEDVGIGLRYD-------WGKYYASKTFYDP- 292
Query: 101 EDPGRPVYKWMAEHTQNMSG-----SNKEYVPYSTTRDK 134
+ R V+ W E ++ +N + +P + D+
Sbjct: 293 KKQRRVVWAWTKELDSEVADREKGWANVQTIPRTVLLDQ 331
>pdb|1YIQ|A Chain A, Molecular Cloning And Structural Analysis Of
Quinohemoprotein Alcohol Dehydrogenase Adhiig From
Pseudomonas Putida Hk5. Compariison To The Other
Quinohemoprotein Alcohol Dehydrogenase Adhiib Found In
The Same Microorganism
Length = 689
Score = 26.6 bits (57), Expect = 5.4, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 13/111 (11%)
Query: 38 DLKFGKYVGIDQFGNKYYENPRY------FFGRNRW--VIYNPDVGLNYDGSMVPAEWYG 89
D+K G+ + +D+ Y++N + F+G + W + YNPD GL Y +PA
Sbjct: 357 DMKTGRPI-LDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVY----IPAHIMS 411
Query: 90 WLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGSNKEYVPYSTTRDKIQAWTP 140
+ P +P + +Y+ G+ + K+ AW P
Sbjct: 412 AYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDP 462
>pdb|4AF3|A Chain A, Human Aurora B Kinase In Complex With Incenp And Vx-680
Length = 292
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 15 NLRKIYKENGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKY 54
+++K+ + + G + + DD + G+ +G +FGN Y
Sbjct: 1 SMQKVMENSSGTPDILTRHFTIDDFEIGRPLGKGKFGNVY 40
>pdb|1KFI|A Chain A, Crystal Structure Of The Exocytosis-Sensitive
Phosphoprotein, Pp63PARAFUSIN (PHOSPHOGLUCOMUTASE) FROM
Paramecium
pdb|1KFI|B Chain B, Crystal Structure Of The Exocytosis-Sensitive
Phosphoprotein, Pp63PARAFUSIN (PHOSPHOGLUCOMUTASE) FROM
Paramecium
pdb|1KFQ|A Chain A, Crystal Structure Of Exocytosis-Sensitive Phosphoprotein,
Pp63PARAFUSIN (PHOSPHOGLUCOMUTSE) FROM PARAMECIUM. OPEN
Form
pdb|1KFQ|B Chain B, Crystal Structure Of Exocytosis-Sensitive Phosphoprotein,
Pp63PARAFUSIN (PHOSPHOGLUCOMUTSE) FROM PARAMECIUM. OPEN
Form
Length = 572
Score = 26.2 bits (56), Expect = 6.7, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 34 YLTDDLKFGKYVGIDQFGNKYYENPR 59
YLT D +F K++ +DQ G +E R
Sbjct: 167 YLTVDYEFEKHINLDQIGVYKFEGTR 192
>pdb|4G63|A Chain A, Crystal Structure Of Cytosolic Imp-Gmp Specific
5'-Nucleotidase (Lpg0095) In Complex With Phosphate Ions
From Legionella Pneumophila, Northeast Structural
Genomics Consortium Target Lgr1
Length = 470
Score = 26.2 bits (56), Expect = 7.7, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 46 GIDQFGNKYYENPRYFFGRNRWVIYNPDVG--LNYDGSMVPAEWYG 89
G+ +F PR+F+ R++ NP+ G N G +VP + G
Sbjct: 236 GLFEFVITLANKPRFFYDNLRFLSVNPENGTMTNVHGPIVPGVYQG 281
>pdb|2BDE|A Chain A, Crystal Structure Of The Cytosolic Imp-Gmp Specific
5'-Nucleotidase (Lpg0095) From Legionella Pneumophila,
Northeast Structural Genomics Target Lgr1
Length = 470
Score = 26.2 bits (56), Expect = 8.2, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 46 GIDQFGNKYYENPRYFFGRNRWVIYNPDVG--LNYDGSMVPAEWYG 89
G+ +F PR+F+ R++ NP+ G N G +VP + G
Sbjct: 236 GLFEFVITLANKPRFFYDNLRFLSVNPENGTXTNVHGPIVPGVYQG 281
>pdb|3GRH|A Chain A, Crystal Structure Of Escherichia Coli Ybhc
Length = 422
Score = 25.8 bits (55), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 74 VGLNYDGSMVPAEWYGWLHYKTDYTP 99
+GL+ DG M PA+W ++ + Y P
Sbjct: 144 IGLSLDGGMSPADWRHDVNPRGKYMP 169
>pdb|1I2O|A Chain A, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant E96a
pdb|1I2O|B Chain B, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant E96a
Length = 316
Score = 25.8 bits (55), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 86 EWYGWLHYKTDYTPCEDPG----RPVYKWMAEH 114
+WY K +Y P EDPG +Y++ EH
Sbjct: 183 DWYKANTDKKEYAPAEDPGVVSVSEIYQYYKEH 215
>pdb|1I2Q|A Chain A, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant T156a
pdb|1I2Q|B Chain B, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant T156a
Length = 316
Score = 25.8 bits (55), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 86 EWYGWLHYKTDYTPCEDPG----RPVYKWMAEH 114
+WY K +Y P EDPG +Y++ EH
Sbjct: 183 DWYKANTDKKEYAPAEDPGVVSVSEIYQYYKEH 215
>pdb|1I2P|A Chain A, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant D17a
pdb|1I2P|B Chain B, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant D17a
Length = 316
Score = 25.8 bits (55), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 86 EWYGWLHYKTDYTPCEDPG----RPVYKWMAEH 114
+WY K +Y P EDPG +Y++ EH
Sbjct: 183 DWYKANTDKKEYAPAEDPGVVSVSEIYQYYKEH 215
>pdb|1I2R|A Chain A, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant S176a
pdb|1I2R|B Chain B, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant S176a
Length = 316
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 86 EWYGWLHYKTDYTPCEDPG----RPVYKWMAEH 114
+WY K +Y P EDPG +Y++ EH
Sbjct: 183 DWYKANTDKKEYAPAEDPGVVSVSEIYQYYKEH 215
>pdb|1ONR|A Chain A, Structure Of Transaldolase B
pdb|1ONR|B Chain B, Structure Of Transaldolase B
Length = 316
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 86 EWYGWLHYKTDYTPCEDPG----RPVYKWMAEH 114
+WY K +Y P EDPG +Y++ EH
Sbjct: 183 DWYKANTDKKEYAPAEDPGVVSVSEIYQYYKEH 215
>pdb|1UCW|A Chain A, Complex Of Transaldolase With The Reduced Schiff-Base
Intermediate
pdb|1UCW|B Chain B, Complex Of Transaldolase With The Reduced Schiff-Base
Intermediate
Length = 317
Score = 25.8 bits (55), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 86 EWYGWLHYKTDYTPCEDPG----RPVYKWMAEH 114
+WY K +Y P EDPG +Y++ EH
Sbjct: 184 DWYKANTDKKEYAPAEDPGVVSVSEIYQYYKEH 216
>pdb|1I2N|A Chain A, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant N35a
pdb|1I2N|B Chain B, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant N35a
Length = 316
Score = 25.8 bits (55), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 86 EWYGWLHYKTDYTPCEDPG----RPVYKWMAEH 114
+WY K +Y P EDPG +Y++ EH
Sbjct: 183 DWYKANTDKKEYAPAEDPGVVSVSEIYQYYKEH 215
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.460
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,719,323
Number of Sequences: 62578
Number of extensions: 272316
Number of successful extensions: 562
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 556
Number of HSP's gapped (non-prelim): 23
length of query: 149
length of database: 14,973,337
effective HSP length: 90
effective length of query: 59
effective length of database: 9,341,317
effective search space: 551137703
effective search space used: 551137703
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)