BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy291
(149 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9N2W7|NDUAC_CAEEL Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
12 OS=Caenorhabditis elegans GN=Y94H6A.8 PE=3 SV=2
Length = 146
Score = 130 bits (326), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 86/138 (62%), Gaps = 2/138 (1%)
Query: 4 LKNFLGINVLENLRKIYKENGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFG 63
LK +LGI+ ++ ++ KE GG+K K YL D + G VG D FGN+YYEN YF
Sbjct: 3 LKAWLGIDKIQKFGQMVKEIGGVKAVLKKRYLMDATRVGTLVGSDNFGNRYYENNAYFVP 62
Query: 64 RNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSG-SN 122
RNRWV + V L+YD + VP EW+ WLH+ TD P P P W+ EH +N S ++
Sbjct: 63 RNRWVEFPDKVWLDYDATQVPPEWHSWLHHITDDAPSVKPP-PTQDWVLEHKENTSIYAD 121
Query: 123 KEYVPYSTTRDKIQAWTP 140
K+YVPYSTTR KIQ W P
Sbjct: 122 KKYVPYSTTRTKIQGWQP 139
>sp|Q0MQ86|NDUAC_GORGO NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
OS=Gorilla gorilla gorilla GN=NDUFA12 PE=2 SV=1
Length = 145
Score = 116 bits (291), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 83/139 (59%), Gaps = 5/139 (3%)
Query: 10 INVLENLRKIYKENGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFGRNRWVI 69
+ VL+ + +GGL+ + + T+D K G VG D++GNKYYE+ + FFGR+RWV+
Sbjct: 4 VQVLKRGLQQITGHGGLRGYLRVFFRTNDAKVGTLVGEDKYGNKYYEDNKQFFGRHRWVV 63
Query: 70 YNPDVG-----LNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGSNKE 124
Y ++ + DGSMVP EW+ WLH TD P P H NM+G+ ++
Sbjct: 64 YTTEMNGKNTFWDVDGSMVPPEWHRWLHSMTDDPPTTKPLTARKFIWTNHKFNMTGTPEQ 123
Query: 125 YVPYSTTRDKIQAWTPPSS 143
YVPYSTTR KIQ W PPS+
Sbjct: 124 YVPYSTTRKKIQEWIPPST 142
>sp|O97725|NDUAC_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
OS=Bos taurus GN=NDUFA12 PE=1 SV=1
Length = 145
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 84/139 (60%), Gaps = 5/139 (3%)
Query: 10 INVLENLRKIYKENGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFGRNRWVI 69
+ VL+ + +GGL+ + L+ +D++ G VG D++GNKYYE+ + FFGR+RWVI
Sbjct: 4 LQVLKRGLQQVSGHGGLRGYLRVLFRANDVRVGTLVGEDKYGNKYYEDNKQFFGRHRWVI 63
Query: 70 YNPDVG-----LNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGSNKE 124
Y ++ + DGSMVP EW+ WLH TD P P H N+SG+ ++
Sbjct: 64 YTTEMNGKNTFWDVDGSMVPPEWHRWLHCMTDDPPTVKPPTARKFIWTNHKFNLSGTPQQ 123
Query: 125 YVPYSTTRDKIQAWTPPSS 143
YVPYSTTR KIQ W PPS+
Sbjct: 124 YVPYSTTRKKIQEWVPPST 142
>sp|Q0MQ87|NDUAC_PANTR NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
OS=Pan troglodytes GN=NDUFA12 PE=2 SV=1
Length = 145
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 83/139 (59%), Gaps = 5/139 (3%)
Query: 10 INVLENLRKIYKENGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFGRNRWVI 69
+ VL+ + +GGL+ + + T+D K G VG D++GNKYYE+ + FFGR+RWV+
Sbjct: 4 VQVLKRGLQQITGHGGLRGYLRVFFRTNDAKVGTLVGEDKYGNKYYEDNKQFFGRHRWVV 63
Query: 70 YNPDVG-----LNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGSNKE 124
Y ++ + DGSMVP EW+ WLH TD P P H N++G+ ++
Sbjct: 64 YTTEMNGKNTFWDVDGSMVPPEWHRWLHSMTDDPPTTKPLTARKFIWTNHKFNVTGTPEQ 123
Query: 125 YVPYSTTRDKIQAWTPPSS 143
YVPYSTTR KIQ W PPS+
Sbjct: 124 YVPYSTTRKKIQEWIPPST 142
>sp|Q9UI09|NDUAC_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
OS=Homo sapiens GN=NDUFA12 PE=1 SV=1
Length = 145
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 83/139 (59%), Gaps = 5/139 (3%)
Query: 10 INVLENLRKIYKENGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFGRNRWVI 69
+ VL+ + +GGL+ + + T+D K G VG D++GNKYYE+ + FFGR+RWV+
Sbjct: 4 VQVLKRGLQQITGHGGLRGYLRVFFRTNDAKVGTLVGEDKYGNKYYEDNKQFFGRHRWVV 63
Query: 70 YNPDVG-----LNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGSNKE 124
Y ++ + DGSMVP EW+ WLH TD P P H N++G+ ++
Sbjct: 64 YTTEMNGKNTFWDVDGSMVPPEWHRWLHSMTDDPPTTKPLTARKFIWTNHKFNVTGTPEQ 123
Query: 125 YVPYSTTRDKIQAWTPPSS 143
YVPYSTTR KIQ W PPS+
Sbjct: 124 YVPYSTTRKKIQEWIPPST 142
>sp|Q0MQ85|NDUAC_PONPY NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
OS=Pongo pygmaeus GN=NDUFA12 PE=2 SV=1
Length = 145
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 83/139 (59%), Gaps = 5/139 (3%)
Query: 10 INVLENLRKIYKENGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFGRNRWVI 69
+ VL+ + +GGL+ + + T+D K G VG D++GNKYYE+ + FFGR+RWV+
Sbjct: 4 VQVLKRGLQRITGHGGLRGYLRVFFRTNDAKVGTLVGEDKYGNKYYEDNKQFFGRHRWVV 63
Query: 70 YNPDVG-----LNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGSNKE 124
Y ++ + DGSMVP EW+ WLH TD P P H N++G+ ++
Sbjct: 64 YTTEMNGKNTFWDVDGSMVPPEWHHWLHSITDDPPTTKPLTARKFIWTNHKFNVTGTPEQ 123
Query: 125 YVPYSTTRDKIQAWTPPSS 143
YVPYSTTR KIQ W PPS+
Sbjct: 124 YVPYSTTRKKIQEWIPPST 142
>sp|Q7TMF3|NDUAC_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
OS=Mus musculus GN=Ndufa12 PE=1 SV=2
Length = 145
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 82/139 (58%), Gaps = 5/139 (3%)
Query: 10 INVLENLRKIYKENGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFGRNRWVI 69
+ VL+ + +GGL+ + + +D++ G VG D++GNKYYE+ + FFGR+RWVI
Sbjct: 4 VEVLKRGVQQVTGHGGLRGLLRVFFRANDIRIGTLVGEDKYGNKYYEDNKQFFGRHRWVI 63
Query: 70 YNPDVG-----LNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGSNKE 124
Y ++ + DGSMVP EW+ WLH TD P +P H N+S + ++
Sbjct: 64 YTTEMNGKNTFWDVDGSMVPPEWHRWLHCMTDDPPTTNPPTARKFIWTNHKFNVSATPEQ 123
Query: 125 YVPYSTTRDKIQAWTPPSS 143
YVPYSTTR KI W PPS+
Sbjct: 124 YVPYSTTRKKIHEWVPPST 142
>sp|Q54MV7|NDUAC_DICDI NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
OS=Dictyostelium discoideum GN=ndufa12 PE=2 SV=2
Length = 138
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 63/104 (60%), Gaps = 5/104 (4%)
Query: 25 GLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFGRNRWVIYNPDVGLNYDGSMVP 84
G+K KTLY T +LKFG VG+D+ GN+YYEN + +GR+RWV Y D N D + +P
Sbjct: 15 GIKESIKTLYYTGELKFGTLVGVDKVGNRYYENRQEIYGRHRWVEYG-DYKSN-DPTTIP 72
Query: 85 AEWYGWLHYKTDYTPCED-PGRPVYKWMAEHTQNMSGSNKEYVP 127
E++ W+H+ +D P E P P YK H N +G++ Y P
Sbjct: 73 PEYHSWIHHVSDKLPSEMLPFSPTYK--RPHIANPTGTDGAYTP 114
>sp|Q9M9M9|NDUAC_ARATH Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
12 OS=Arabidopsis thaliana GN=At3g03100 PE=1 SV=1
Length = 159
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 57/110 (51%), Gaps = 12/110 (10%)
Query: 45 VGIDQFGNKYYEN-PRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDP 103
VG+D+FGNKYY+ +GR+RWV Y Y+ S VPAEW+GWLH+ TD+T E
Sbjct: 52 VGVDKFGNKYYQKLGDTQYGRHRWVEYASKD--RYNASQVPAEWHGWLHFITDHTGDELL 109
Query: 104 GRPVYKWMAEHTQNMSGSNKEYVPYSTTR---------DKIQAWTPPSSS 144
++ EH +N SG Y+ +S + Q+W P +
Sbjct: 110 SLKPKRYGLEHKENFSGEGDAYIYHSKGHTLNPGQKNWTRYQSWVPTKTQ 159
>sp|Q8N183|MIMIT_HUMAN Mimitin, mitochondrial OS=Homo sapiens GN=NDUFAF2 PE=1 SV=1
Length = 169
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 24 GGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRY------FFGRNRWVIYNPDVGLN 77
G ++ ++ L+ + + ++VG DQFGNKYY P+Y R V ++
Sbjct: 2 GWSQDLFRALWRSLSREVKEHVGTDQFGNKYYYIPQYKNWRGQTIREKRIVEAANKKEVD 61
Query: 78 YDGSMVPAEWYGWLHYKTDYTP 99
Y+ +P EW W+ +T TP
Sbjct: 62 YEAGDIPTEWEAWIR-RTRKTP 82
>sp|Q9ZCK4|Y725_RICPR Uncharacterized protein RP725 OS=Rickettsia prowazekii (strain
Madrid E) GN=RP725 PE=4 SV=1
Length = 100
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 41 FGKYVGIDQFGNKYYE--NPRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYT 98
F VG D+F N+YYE N + GR+R + ++ + + +P WY WLH+ +
Sbjct: 12 FYTKVGEDEFLNQYYESRNNIDYLGRSRRCVIYKNIN---ESTKIPPSWYSWLHHLVNEI 68
Query: 99 P 99
P
Sbjct: 69 P 69
>sp|Q32P65|MIMIT_BOVIN Mimitin, mitochondrial OS=Bos taurus GN=NDUFAF2 PE=2 SV=1
Length = 168
Score = 35.8 bits (81), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 35 LTDDLKFGKYVGIDQFGNKYYENPRY------FFGRNRWVIYNPDVGLNYDGSMVPAEWY 88
L+ ++K + VG D+FGNKYY P Y R V ++Y+ +P EW
Sbjct: 15 LSKEVK--EQVGTDRFGNKYYYIPEYKNWRGQTIREKRIVEAANKSEIDYEVGDIPTEWE 72
Query: 89 GWLHYKTDYTP 99
W+ KT TP
Sbjct: 73 AWIR-KTRQTP 82
>sp|Q59J78|MIMIT_MOUSE Mimitin, mitochondrial OS=Mus musculus GN=Ndufaf2 PE=2 SV=1
Length = 168
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 29 CWKTLYLTDDLKFGKYVGIDQFGNKYYENPRY------FFGRNRWVIYNPDVGLNYDGSM 82
W++++ + ++VG D GNKYY Y R V ++Y+
Sbjct: 7 VWRSVWSALSREVREHVGTDHLGNKYYYVAEYKNWRGQTIREKRIVEAANRKEVDYEAGD 66
Query: 83 VPAEWYGWLHYKTDYTP 99
+P EW W+ +T TP
Sbjct: 67 IPTEWEAWIR-RTRKTP 82
>sp|Q96JM4|LRIQ1_HUMAN Leucine-rich repeat and IQ domain-containing protein 1 OS=Homo
sapiens GN=LRRIQ1 PE=2 SV=3
Length = 1722
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 94 KTDYTPCEDPGRPVYKWMAEHTQNMSGSNKEYVPY-STTRDKIQAWTPPSSSGRNKF 149
K D T P P W+ +N+S S E+ + S + +K +WTP S + R
Sbjct: 1479 KWDDTSFNLPSNPAQAWLCNDKENLSSS--EHTQFNSRSENKTSSWTPESKTSRKSL 1533
>sp|O74761|PRI2_SCHPO DNA primase large subunit OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=pri2 PE=1 SV=1
Length = 459
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 62 FGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGS 121
FGR ++ ++ D+GL+ D ++V W T+ T ED Y++ HT + G+
Sbjct: 308 FGRLQYGLFLKDIGLSVDEALV-----FWRKSFTNVT--EDKFNKEYRYNIRHTYGLEGN 360
Query: 122 NKEYVPYS 129
K Y Y+
Sbjct: 361 RKNYKGYN 368
>sp|Q1ZXN4|C519C_DICDI Probable cytochrome P450 519C1 OS=Dictyostelium discoideum
GN=cyp519C1 PE=3 SV=1
Length = 524
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 8 LGINVLENLRKIYKENGGLKNCW----KTLYLTDDLKFGKYVGIDQFGNKYYENPR 59
LG+N NL K+ ++NGG+ + W KT+ +TD K + + QF N + + PR
Sbjct: 46 LGVNPHRNLTKLVEKNGGIFSLWLGDIKTVIVTDP-SINKEIMVKQFTN-FSDRPR 99
>sp|Q56850|LAMB_YEREN Maltoporin (Fragment) OS=Yersinia enterocolitica GN=lamB PE=3 SV=1
Length = 400
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 88 YGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGS-NKEYVPYSTTRDKIQAWTPPSSSG 145
YG + + DY+ + + AEHTQ+M G NK V Y+T D + +W S G
Sbjct: 191 YGRANTQDDYSLAPNASKDGVLLTAEHTQSMMGGFNKFVVQYAT--DSMTSWNSGHSQG 247
>sp|A1JRU8|LAMB_YERE8 Maltoporin OS=Yersinia enterocolitica serotype O:8 / biotype 1B
(strain 8081) GN=lamB PE=3 SV=1
Length = 428
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 88 YGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGS-NKEYVPYSTTRDKIQAWTPPSSSG 145
YG + + DY+ + + AEHTQ+M G NK V Y+T D + +W S G
Sbjct: 216 YGRANTQDDYSLAPNASKDGVLLTAEHTQSMMGGFNKFVVQYAT--DSMTSWNSGHSQG 272
>sp|Q97AU2|RPIA_THEVO Ribose-5-phosphate isomerase A OS=Thermoplasma volcanium (strain
ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=rpiA PE=3 SV=1
Length = 241
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 7 FLGINVLENLRKIYKENGGLKNCWKTLYLTD------DLKFGKYVGIDQFGNKYYENP 58
FL LENLRKI KN TL++TD D+KFG+ ++ K P
Sbjct: 142 FLHRMTLENLRKICPSTDLRKNSDGTLFITDNGNYIADMKFGRIRETNELEKKIKSIP 199
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.138 0.460
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,054,936
Number of Sequences: 539616
Number of extensions: 3133470
Number of successful extensions: 5156
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 5123
Number of HSP's gapped (non-prelim): 27
length of query: 149
length of database: 191,569,459
effective HSP length: 107
effective length of query: 42
effective length of database: 133,830,547
effective search space: 5620882974
effective search space used: 5620882974
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)