Query psy291
Match_columns 149
No_of_seqs 102 out of 520
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 20:43:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy291.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/291hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3382|consensus 100.0 1.1E-50 2.3E-55 310.5 9.5 141 4-144 9-150 (151)
2 PLN02732 Probable NADH dehydro 100.0 2.5E-45 5.4E-50 287.8 13.2 131 10-143 3-158 (159)
3 PRK08183 NADH dehydrogenase; V 100.0 7.9E-42 1.7E-46 261.6 9.7 103 35-142 19-133 (133)
4 PLN03095 NADH:ubiquinone oxido 100.0 1.1E-41 2.4E-46 255.2 9.3 104 35-141 3-115 (115)
5 PF05071 NDUFA12: NADH ubiquin 100.0 4.8E-38 1E-42 231.4 6.1 95 42-140 1-105 (105)
6 COG3761 NADH:ubiquinone oxidor 100.0 1.1E-32 2.4E-37 203.6 7.0 94 43-141 14-118 (118)
7 PRK06630 hypothetical protein; 100.0 5.4E-30 1.2E-34 186.9 6.7 74 35-115 6-81 (99)
8 PF15613 WHIM2: WSTF, HB1, Itc 91.5 0.2 4.4E-06 30.9 2.5 15 43-57 3-17 (38)
9 cd01717 Sm_B The eukaryotic Sm 38.5 18 0.00039 24.8 1.2 19 40-58 23-41 (79)
10 PF06739 SBBP: Beta-propeller 33.7 30 0.00066 20.7 1.5 15 42-56 15-29 (38)
11 cd06168 LSm9 The eukaryotic Sm 30.0 31 0.00066 23.8 1.2 18 41-58 24-41 (75)
12 cd01727 LSm8 The eukaryotic Sm 27.6 35 0.00075 23.1 1.2 19 41-59 23-41 (74)
13 PF11385 DUF3189: Protein of u 27.5 44 0.00095 26.1 1.9 15 43-57 53-67 (148)
14 PF14050 Nudc_N: N-terminal co 25.5 1.3E+02 0.0027 20.2 3.6 30 16-45 7-36 (62)
15 PRK14384 hypothetical protein; 25.5 92 0.002 20.8 2.9 22 16-37 14-35 (56)
16 smart00651 Sm snRNP Sm protein 23.1 45 0.00098 21.4 1.1 21 39-59 20-40 (67)
17 cd01729 LSm7 The eukaryotic Sm 22.5 50 0.0011 22.9 1.2 18 41-58 26-43 (81)
18 cd00600 Sm_like The eukaryotic 21.8 55 0.0012 20.6 1.3 20 40-59 19-38 (63)
19 TIGR00723 ttdB_fumA_fumB hydro 21.7 54 0.0012 26.3 1.4 15 42-56 153-167 (168)
20 COG1788 AtoD Acyl CoA:acetate/ 21.0 94 0.002 26.1 2.7 27 47-73 159-192 (220)
21 PRK08395 fumarate hydratase; P 20.5 56 0.0012 26.1 1.3 15 42-56 148-162 (162)
No 1
>KOG3382|consensus
Probab=100.00 E-value=1.1e-50 Score=310.48 Aligned_cols=141 Identities=51% Similarity=0.956 Sum_probs=135.6
Q ss_pred hhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHhhcccccCeEEeeeCCCCEEeecCCCCCCcceEEEcCCCCCcCcCCCCC
Q psy291 4 LKNFLGINVLENLRKIYKENGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFGRNRWVIYNPDVGLNYDGSMV 83 (149)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~~G~r~~l~~l~r~~~~k~g~lVG~D~~GNkYYE~~~~~~gr~RwV~y~~~~~~~~d~s~I 83 (149)
|++++|++.|.+..+.|++.||+|.+++.+||.++.+.|+|||.|+|||||||++.++.||+|||+|+++.++|||+|+|
T Consensus 9 ~~~~l~i~~l~k~~qmire~Gglr~~~~k~yrtd~~kiGTLVG~DkfGNkYyen~~~fygRhRWVeya~kv~~Dyd~S~V 88 (151)
T KOG3382|consen 9 ALEALGIKGLGKFMQMIREEGGLRCLLDKLYRTDDHKIGTLVGVDKFGNKYYENNDYFYGRHRWVEYASKVNWDYDASQV 88 (151)
T ss_pred HHHHHhHHHHHHHHHHHHhhccHHHHHHHHHhcccccceeeeeecccccchhcccceecccceeEEecccccccccccCC
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhhccccCCCCCCCCCCCCccccccCcCCCCC-CCCCccCCCCCCCCccccCCCCCC
Q psy291 84 PAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSG-SNKEYVPYSTTRDKIQAWTPPSSS 144 (149)
Q Consensus 84 PpeWh~WLh~~rd~pPt~~el~~~~~w~~~h~~N~Tg-t~~aY~P~~t~r~ky~~W~P~~~~ 144 (149)
|||||+|||+++|+||+..-.++.++|..+|.+|+|| |..+|.||+|+|.|||+|.|..+.
T Consensus 89 P~EWh~WlH~iTD~~p~~~~~~~~~k~i~eHkeN~Sg~t~e~y~Pystt~tkiq~W~P~~t~ 150 (151)
T KOG3382|consen 89 PAEWHGWLHFITDDPPDEKLPLPPKKWILEHKENFSGETGETYVPYSTTRTKIQSWVPTKTP 150 (151)
T ss_pred CHHHHhHhHhhccCCccccCCCCHHHHhHhccccccccCCceeccCcCChhHhheecCCCCC
Confidence 9999999999999999988558889999999999999 999999999999999999998654
No 2
>PLN02732 Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
Probab=100.00 E-value=2.5e-45 Score=287.76 Aligned_cols=131 Identities=34% Similarity=0.617 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHhhcccc-----------c----CeEEeeeCCCCEEeecCC-CCCCcceEEEcCCC
Q psy291 10 INVLENLRKIYKENGGLKNCWKTLYLTDDLK-----------F----GKYVGIDQFGNKYYENPR-YFFGRNRWVIYNPD 73 (149)
Q Consensus 10 ~~~~~~~~~~i~~~~G~r~~l~~l~r~~~~k-----------~----g~lVG~D~~GNkYYE~~~-~~~gr~RwV~y~~~ 73 (149)
+++|++++++|+++ |+++++++|+++++.| . |+|||+|+|||+|||+++ ...||+|||+|++.
T Consensus 3 ~~~~~~~~~~~~~~-G~~~~~~~l~~~g~~k~~~~g~t~gt~~~~~~G~lVG~D~~GNkYYE~~~~~~~grrRWV~Y~~~ 81 (159)
T PLN02732 3 LTVVKSALEAIREK-GLGGFLRMLREEGYLRCLADGNLLQTKIHNIGATLVGVDKFGNKYYQKLGDTQYGRHRWVEYAEK 81 (159)
T ss_pred HHHHHHHHHHHHHh-hHHHHHHHHHHccchhhccCcceeeeEEEeeCcEEEEecCCCCeeeecCCCCCCCceeEEEeCCC
Confidence 78999999999999 9999999999999977 6 999999999999999995 45689999999986
Q ss_pred CCcCcCCCCCCchhhhhhccccCCCCCCCCCCCCccccccCcCCCCCCC--CCccCCCC-------CCCCccccCCCCC
Q psy291 74 VGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGSN--KEYVPYST-------TRDKIQAWTPPSS 143 (149)
Q Consensus 74 ~~~~~d~s~IPpeWh~WLh~~rd~pPt~~el~~~~~w~~~h~~N~Tgt~--~aY~P~~t-------~r~ky~~W~P~~~ 143 (149)
.+||+|+||||||+||||++|+||++.+.+..+.|+++|++|+|||+ .+|+|.++ ++.+||+|+|+..
T Consensus 82 --~~~daS~VPpeWH~WLH~~~D~pP~~~~~~~~~~w~~~H~pNlTGT~~~~ay~p~Gs~~~~g~~~~~dYeaW~P~~~ 158 (159)
T PLN02732 82 --SRYNASQVPAEWHGWLHFITDHTGDELLMLKPKRYGLEHKENFSGEGEEYIYHSKGHTLNPGQKDWTRYQSWQPTKT 158 (159)
T ss_pred --ccCCcCcCCchhhhhhccccCCCCccccccCCCccccCCCCCcCCCCCCceECCCcccccCCCCcccCccCCCCCCC
Confidence 25899999999999999999999987333566789999999999998 67777654 3468999999865
No 3
>PRK08183 NADH dehydrogenase; Validated
Probab=100.00 E-value=7.9e-42 Score=261.60 Aligned_cols=103 Identities=36% Similarity=0.689 Sum_probs=91.8
Q ss_pred hhcccccCeEEeeeCCCCEEeecCCC---CCCcceEEEcCCCCCcCcCCCCCCchhhhhhccccCCCCCCCCCCCCcccc
Q psy291 35 LTDDLKFGKYVGIDQFGNKYYENPRY---FFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWM 111 (149)
Q Consensus 35 r~~~~k~g~lVG~D~~GNkYYE~~~~---~~gr~RwV~y~~~~~~~~d~s~IPpeWh~WLh~~rd~pPt~~el~~~~~w~ 111 (149)
+++.+|.|+|||+|++||+|||+++. ..+++|||+|++. +|+|+||||||+||||++|+|||+++ +..++|+
T Consensus 19 ~~~~~r~g~lVG~D~~GNkYYE~~~~~~~~~~~rRWV~Y~~~----~d~s~IPpeWh~WLh~~~d~pPt~~~-~~~~~w~ 93 (133)
T PRK08183 19 RFFTWRKGERVGEDEFGNVYYRTKGGKPSDGRERRWVIYNGY----AEASRIPPEWHGWLHHTVDVPPTKEP-YPPREWE 93 (133)
T ss_pred eeehhccCeEeEecCCCCeeeecCCccccCCCceEEEEeCCC----CCccccCchHHhhhccCcCCCCCccc-cCCCccc
Confidence 46678999999999999999999873 3466999999985 89999999999999999999999988 6778899
Q ss_pred ccCcCCCCCCCCCccCCCC---------CCCCccccCCCC
Q psy291 112 AEHTQNMSGSNKEYVPYST---------TRDKIQAWTPPS 142 (149)
Q Consensus 112 ~~h~~N~Tgt~~aY~P~~t---------~r~ky~~W~P~~ 142 (149)
++|++|+|||+.||+|+++ +..+||+|+|+.
T Consensus 94 ~~H~~N~TGT~~aY~P~G~~~~~~~r~~~~~dY~aW~P~~ 133 (133)
T PRK08183 94 KPHQPNLTGTPLAYRPKGSILRGGERPRATGDYDAWTPGN 133 (133)
T ss_pred cCCCCCCCCCccceeCCCccccCCcCCcccCCcccCCCCC
Confidence 9999999999999999976 235899999973
No 4
>PLN03095 NADH:ubiquinone oxidoreductase 18 kDa subunit; Provisional
Probab=100.00 E-value=1.1e-41 Score=255.18 Aligned_cols=104 Identities=38% Similarity=0.767 Sum_probs=94.2
Q ss_pred hhcccccCeEEeeeCCCCEEeecCCCCCCcceEEEcCCCCCcCcCCCCCCchhhhhhccccCCCCCCCCCCCCccccccC
Q psy291 35 LTDDLKFGKYVGIDQFGNKYYENPRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEH 114 (149)
Q Consensus 35 r~~~~k~g~lVG~D~~GNkYYE~~~~~~gr~RwV~y~~~~~~~~d~s~IPpeWh~WLh~~rd~pPt~~el~~~~~w~~~h 114 (149)
+++++|.|+|||+|++||+|||++....|++|||+|++. .+||+|+||||||+||||++|+|||+++ +..+.|+++|
T Consensus 3 ~~~~~r~g~lVG~D~~GNkYYE~~~~~~~rrRWV~Y~~~--~d~d~S~VPpeWH~WLh~~~d~pPt~~~-~~~~~w~~~H 79 (115)
T PLN03095 3 LVLASRAGRLVGEDEFGNKYYENPSYQSGRHRWVEYADK--DDYNASNIPPEWHGWLHYVNDEPGELED-RTAPRYQLEF 79 (115)
T ss_pred ceeeeecceEeEEcCCCCeeeEcCCCCCCCeEEEEeCCC--ccCCccccCchHhHhhccCcCCCCCccc-cCCCccccCC
Confidence 467889999999999999999999877789999999986 3689999999999999999999999876 7778899999
Q ss_pred cCCCC--CCCCCccCCCC-------CCCCccccCCC
Q psy291 115 TQNMS--GSNKEYVPYST-------TRDKIQAWTPP 141 (149)
Q Consensus 115 ~~N~T--gt~~aY~P~~t-------~r~ky~~W~P~ 141 (149)
++|+| ||+.||+|.++ ++.+||+|+|+
T Consensus 80 ~~NlT~tGT~~aY~P~Gs~~~~~~~~~~dY~aW~P~ 115 (115)
T PLN03095 80 IAGGTTTGTQYMYHPKGHFLSKRPRNWKRYTPWSPP 115 (115)
T ss_pred CCCcCCCCCccceeCCCccccCCCCcccCccCCCCC
Confidence 99999 89999999976 34689999995
No 5
>PF05071 NDUFA12: NADH ubiquinone oxidoreductase subunit NDUFA12; InterPro: IPR007763 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. this entry represents the 17.2kDa subunit from NADH:ubiquinone oxidoreductase and its homologues []. This subunit is believed to be one of the 36 structural complex I proteins.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0009055 electron carrier activity, 0016020 membrane
Probab=100.00 E-value=4.8e-38 Score=231.38 Aligned_cols=95 Identities=44% Similarity=0.880 Sum_probs=86.8
Q ss_pred CeEEeeeCCCCEEeecC-CCCCCcceEEEcCCCCCcCcCCCCCCchhhhhhccccCCCCCCCCCCCCccccccCcCCCCC
Q psy291 42 GKYVGIDQFGNKYYENP-RYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSG 120 (149)
Q Consensus 42 g~lVG~D~~GNkYYE~~-~~~~gr~RwV~y~~~~~~~~d~s~IPpeWh~WLh~~rd~pPt~~el~~~~~w~~~h~~N~Tg 120 (149)
|+|||+|++||+|||++ ....+++|||+|++.. +|++++||||||+||||++++|||+++ +....|+++|++|+||
T Consensus 1 G~lVG~D~~GN~YyE~~~~~~~~~rRwV~y~~~~--~~~~s~IPpeWh~WL~~~r~~pPt~~~-~~~~~~~~~~~~n~t~ 77 (105)
T PF05071_consen 1 GTLVGTDEFGNKYYENPRDEQGRRRRWVEYAGKS--DYDPSQIPPEWHAWLHHTRDEPPTEEE-LARRQWQKPHKPNLTG 77 (105)
T ss_pred CCEeeEeCCCCEEEeecCCCcCCCcEEEEcCCcc--ccCcCccCcchHHHhccCcCCCCCccc-cchHHHHHHhhhhhhc
Confidence 78999999999999999 5556789999999974 688999999999999999999999777 6788999999999999
Q ss_pred CCCCccCCCCCCC---------CccccCC
Q psy291 121 SNKEYVPYSTTRD---------KIQAWTP 140 (149)
Q Consensus 121 t~~aY~P~~t~r~---------ky~~W~P 140 (149)
|+.+|.|+++ ++ ||++|+|
T Consensus 78 ~~~ay~p~~~-~~~~~~~~~~~~y~~W~P 105 (105)
T PF05071_consen 78 TEEAYRPKGT-KSKEREQRNWKKYEAWTP 105 (105)
T ss_pred ChHhhcCCCc-ccccccccccCCccCCCC
Confidence 9999999998 44 5999998
No 6
>COG3761 NADH:ubiquinone oxidoreductase 17.2 kD subunit [Energy production and conversion]
Probab=99.97 E-value=1.1e-32 Score=203.59 Aligned_cols=94 Identities=40% Similarity=0.769 Sum_probs=84.5
Q ss_pred eEEeeeCCCCEEeecCC-CCCCc-ceEEEcCCCCCcCcCCCCCCchhhhhhccccCCCCCCCCCCCCccccccCcCCCCC
Q psy291 43 KYVGIDQFGNKYYENPR-YFFGR-NRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSG 120 (149)
Q Consensus 43 ~lVG~D~~GNkYYE~~~-~~~gr-~RwV~y~~~~~~~~d~s~IPpeWh~WLh~~rd~pPt~~el~~~~~w~~~h~~N~Tg 120 (149)
+-||+|+|||.|||... ...|| ||||||++. .++|.|||+||+||||+.|+||+.+. +..+.||++|.+|+||
T Consensus 14 ~kvGeDefgN~Yye~r~~ds~gr~RRwVIYngy----aEas~IPp~WhgWlHh~vd~~P~~~~-~~~reWqKph~pn~tg 88 (118)
T COG3761 14 KKVGEDEFGNVYYEGRNIDSEGRTRRWVIYNGY----AEASKIPPGWHGWLHHRVDEPPKSEQ-LFPREWQKPHLPNLTG 88 (118)
T ss_pred HhccchhccceeeeccCCccCCCeeeEEEEcCc----chhccCCCchhhhhhhhccCCccccc-cchhhhccccccCCCC
Confidence 77999999999999853 34566 999999997 78999999999999999999999988 8889999999999999
Q ss_pred CCCCccCCCCC-----C----CCccccCCC
Q psy291 121 SNKEYVPYSTT-----R----DKIQAWTPP 141 (149)
Q Consensus 121 t~~aY~P~~t~-----r----~ky~~W~P~ 141 (149)
|..||+|.++. | .+|.+|+|.
T Consensus 89 t~~a~rPkgs~~~~gerp~~t~dYdaWtP~ 118 (118)
T COG3761 89 TPHAYRPKGSLARAGERPRVTGDYDAWTPG 118 (118)
T ss_pred CcceeccCccccccCcCccccccccccCCC
Confidence 99999998862 2 489999994
No 7
>PRK06630 hypothetical protein; Provisional
Probab=99.96 E-value=5.4e-30 Score=186.92 Aligned_cols=74 Identities=30% Similarity=0.537 Sum_probs=63.9
Q ss_pred hhcccccCeEEeeeCCCCEEeecCC--CCCCcceEEEcCCCCCcCcCCCCCCchhhhhhccccCCCCCCCCCCCCccccc
Q psy291 35 LTDDLKFGKYVGIDQFGNKYYENPR--YFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMA 112 (149)
Q Consensus 35 r~~~~k~g~lVG~D~~GNkYYE~~~--~~~gr~RwV~y~~~~~~~~d~s~IPpeWh~WLh~~rd~pPt~~el~~~~~w~~ 112 (149)
..++++.|+|||+|++||+|||+.+ ...+++|||+|++. +|||+||||||+||||+.|+||+ + +..+.||+
T Consensus 6 ~~~t~r~G~lVG~D~~GNkYYE~~~~~~~gr~rRWViY~g~----~daS~VPpeWHgWLHh~~D~pPt--~-~~~k~WqK 78 (99)
T PRK06630 6 KFFITFFHKKVGEDEFLNQYYESRNIDYLGRPRRFVIYKNV----NEPTKIPPSWHAWLHHLVNEIPK--N-IQLFPWQK 78 (99)
T ss_pred hhhhhccCeEeEEeCCCChhcccCCCccCCCceEEEEeCCC----CccccCCcchhhhhccccCCCCC--C-CCCccccC
Confidence 3467789999999999999999964 33355999999986 89999999999999999999999 3 67899998
Q ss_pred cCc
Q psy291 113 EHT 115 (149)
Q Consensus 113 ~h~ 115 (149)
+..
T Consensus 79 p~~ 81 (99)
T PRK06630 79 NNK 81 (99)
T ss_pred cch
Confidence 754
No 8
>PF15613 WHIM2: WSTF, HB1, Itc1p, MBD9 motif 2
Probab=91.49 E-value=0.2 Score=30.92 Aligned_cols=15 Identities=40% Similarity=0.784 Sum_probs=13.3
Q ss_pred eEEeeeCCCCEEeec
Q psy291 43 KYVGIDQFGNKYYEN 57 (149)
Q Consensus 43 ~lVG~D~~GNkYYE~ 57 (149)
..+|.|.+||+||-.
T Consensus 3 ~pLG~DR~~NrYwwf 17 (38)
T PF15613_consen 3 KPLGKDRYGNRYWWF 17 (38)
T ss_pred ccccccCCCceEEEE
Confidence 457999999999987
No 9
>cd01717 Sm_B The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit B heterodimerizes with subunit D3 and three such heterodimers form a hexameric ring structure with alternating B and D3 subunits. The D3 - B heterodimer also assembles into a heptameric ring containing D1, D2, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=38.51 E-value=18 Score=24.79 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=15.5
Q ss_pred ccCeEEeeeCCCCEEeecC
Q psy291 40 KFGKYVGIDQFGNKYYENP 58 (149)
Q Consensus 40 k~g~lVG~D~~GNkYYE~~ 58 (149)
-.|+|+|.|++.|-=-++-
T Consensus 23 ~~G~L~~~D~~~NlVL~~~ 41 (79)
T cd01717 23 FVGQFLAFDKHMNLVLSDC 41 (79)
T ss_pred EEEEEEEEcCccCEEcCCE
Confidence 3699999999999876554
No 10
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=33.69 E-value=30 Score=20.67 Aligned_cols=15 Identities=33% Similarity=0.596 Sum_probs=12.4
Q ss_pred CeEEeeeCCCCEEee
Q psy291 42 GKYVGIDQFGNKYYE 56 (149)
Q Consensus 42 g~lVG~D~~GNkYYE 56 (149)
..=|..|..||.|--
T Consensus 15 ~~~IavD~~GNiYv~ 29 (38)
T PF06739_consen 15 GNGIAVDSNGNIYVT 29 (38)
T ss_pred EEEEEECCCCCEEEE
Confidence 566889999999964
No 11
>cd06168 LSm9 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm9 proteins have a single Sm-like domain structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=29.99 E-value=31 Score=23.83 Aligned_cols=18 Identities=17% Similarity=0.194 Sum_probs=15.1
Q ss_pred cCeEEeeeCCCCEEeecC
Q psy291 41 FGKYVGIDQFGNKYYENP 58 (149)
Q Consensus 41 ~g~lVG~D~~GNkYYE~~ 58 (149)
.|+|+|+|+++|-=-++-
T Consensus 24 ~G~l~~~D~~~NivL~~~ 41 (75)
T cd06168 24 VGVFLCTDRDCNIILGSA 41 (75)
T ss_pred EEEEEEEcCCCcEEecCc
Confidence 699999999999876554
No 12
>cd01727 LSm8 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm8 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=27.56 E-value=35 Score=23.10 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=16.2
Q ss_pred cCeEEeeeCCCCEEeecCC
Q psy291 41 FGKYVGIDQFGNKYYENPR 59 (149)
Q Consensus 41 ~g~lVG~D~~GNkYYE~~~ 59 (149)
.|+|.|.|++.|---++-.
T Consensus 23 ~G~L~~~D~~~NlvL~~~~ 41 (74)
T cd01727 23 VGTLKGFDQATNLILDDSH 41 (74)
T ss_pred EEEEEEEccccCEEccceE
Confidence 6899999999998887653
No 13
>PF11385 DUF3189: Protein of unknown function (DUF3189); InterPro: IPR021525 This family of proteins with unknown function appears to be restricted to Firmicutes
Probab=27.54 E-value=44 Score=26.06 Aligned_cols=15 Identities=40% Similarity=0.831 Sum_probs=13.3
Q ss_pred eEEeeeCCCCEEeec
Q psy291 43 KYVGIDQFGNKYYEN 57 (149)
Q Consensus 43 ~lVG~D~~GNkYYE~ 57 (149)
.++|+|++||.=|-.
T Consensus 53 ~y~G~De~gn~VY~l 67 (148)
T PF11385_consen 53 IYMGTDEYGNEVYIL 67 (148)
T ss_pred EEEEEcCCCCEEEEE
Confidence 689999999999865
No 14
>PF14050 Nudc_N: N-terminal conserved domain of Nudc.
Probab=25.47 E-value=1.3e+02 Score=20.21 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=23.5
Q ss_pred HHHHHHHhCcHHHHHHHHHhhcccccCeEE
Q psy291 16 LRKIYKENGGLKNCWKTLYLTDDLKFGKYV 45 (149)
Q Consensus 16 ~~~~i~~~~G~r~~l~~l~r~~~~k~g~lV 45 (149)
++.++.+.|||.++|-.+|-....|.--+.
T Consensus 7 ll~iaq~~~~I~~~Ld~fF~FL~RkTDFy~ 36 (62)
T PF14050_consen 7 LLSIAQQCGGIEDFLDTFFSFLRRKTDFYH 36 (62)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhccCceee
Confidence 467788889999999999977666655555
No 15
>PRK14384 hypothetical protein; Provisional
Probab=25.45 E-value=92 Score=20.79 Aligned_cols=22 Identities=18% Similarity=0.057 Sum_probs=18.6
Q ss_pred HHHHHHHhCcHHHHHHHHHhhc
Q psy291 16 LRKIYKENGGLKNCWKTLYLTD 37 (149)
Q Consensus 16 ~~~~i~~~~G~r~~l~~l~r~~ 37 (149)
+...|+.+|-+++++..++|+.
T Consensus 14 a~~Ai~~~G~~kG~~l~~~Ril 35 (56)
T PRK14384 14 AETALKRFGVIKGSGLTVWRLL 35 (56)
T ss_pred HHHHHHHHChHHHHHHHHHHHh
Confidence 4678899999999999998873
No 16
>smart00651 Sm snRNP Sm proteins. small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing
Probab=23.08 E-value=45 Score=21.41 Aligned_cols=21 Identities=33% Similarity=0.325 Sum_probs=17.3
Q ss_pred cccCeEEeeeCCCCEEeecCC
Q psy291 39 LKFGKYVGIDQFGNKYYENPR 59 (149)
Q Consensus 39 ~k~g~lVG~D~~GNkYYE~~~ 59 (149)
.-.|+|+|.|.+.|-.-++-.
T Consensus 20 ~~~G~L~~~D~~~NlvL~~~~ 40 (67)
T smart00651 20 EYRGTLKGFDQFMNLVLEDVE 40 (67)
T ss_pred EEEEEEEEECccccEEEccEE
Confidence 346999999999999987654
No 17
>cd01729 LSm7 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm7 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=22.53 E-value=50 Score=22.93 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=14.7
Q ss_pred cCeEEeeeCCCCEEeecC
Q psy291 41 FGKYVGIDQFGNKYYENP 58 (149)
Q Consensus 41 ~g~lVG~D~~GNkYYE~~ 58 (149)
.|+|+|.|+|-|-=-++-
T Consensus 26 ~G~L~~~D~~mNlvL~~~ 43 (81)
T cd01729 26 TGILKGYDQLLNLVLDDT 43 (81)
T ss_pred EEEEEEEcCcccEEecCE
Confidence 699999999999765543
No 18
>cd00600 Sm_like The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=21.82 E-value=55 Score=20.60 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=16.7
Q ss_pred ccCeEEeeeCCCCEEeecCC
Q psy291 40 KFGKYVGIDQFGNKYYENPR 59 (149)
Q Consensus 40 k~g~lVG~D~~GNkYYE~~~ 59 (149)
-.|+|++.|.+.|---.+..
T Consensus 19 ~~G~L~~~D~~~Ni~L~~~~ 38 (63)
T cd00600 19 LEGVLVAFDKYMNLVLDDVE 38 (63)
T ss_pred EEEEEEEECCCCCEEECCEE
Confidence 46999999999998877654
No 19
>TIGR00723 ttdB_fumA_fumB hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region. A number of Fe-S cluster-containing hydro-lyases share a conserved motif, including argininosuccinate lyase, adenylosuccinate lyase, aspartase, class I fumarate hydratase (fumarase), and tartrate dehydratase. This model represents a subset of closely related proteins or modules, including the E. coli tartrate dehydratase beta chain and the C-terminal region of the class I fumarase (where the N-terminal region is homologous to the tartrate dehydratase alpha chain). The activity of archaeal proteins in this subfamily has not been established.
Probab=21.69 E-value=54 Score=26.32 Aligned_cols=15 Identities=33% Similarity=0.554 Sum_probs=13.1
Q ss_pred CeEEeeeCCCCEEee
Q psy291 42 GKYVGIDQFGNKYYE 56 (149)
Q Consensus 42 g~lVG~D~~GNkYYE 56 (149)
--+|..|..||..|+
T Consensus 153 PliV~iDs~Gn~ly~ 167 (168)
T TIGR00723 153 PLIVAIDSHGNSIFQ 167 (168)
T ss_pred eEEEEEECCCCcccc
Confidence 357999999999996
No 20
>COG1788 AtoD Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]
Probab=20.99 E-value=94 Score=26.09 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=19.0
Q ss_pred eeCCCCEEeecCCC-CC------CcceEEEcCCC
Q psy291 47 IDQFGNKYYENPRY-FF------GRNRWVIYNPD 73 (149)
Q Consensus 47 ~D~~GNkYYE~~~~-~~------gr~RwV~y~~~ 73 (149)
-|.+||-.|+-... ++ .++..|+--..
T Consensus 159 aD~~GNl~y~~t~~nfn~~~A~AAk~~IvevEeI 192 (220)
T COG1788 159 ADSHGNLTYRGTARNFNPLMAMAAKRTIVEVEEI 192 (220)
T ss_pred cCCcCCEEEEcccccCCHHHHhhcCeEEEEEEee
Confidence 39999999997764 33 55666666544
No 21
>PRK08395 fumarate hydratase; Provisional
Probab=20.55 E-value=56 Score=26.10 Aligned_cols=15 Identities=33% Similarity=0.468 Sum_probs=13.4
Q ss_pred CeEEeeeCCCCEEee
Q psy291 42 GKYVGIDQFGNKYYE 56 (149)
Q Consensus 42 g~lVG~D~~GNkYYE 56 (149)
--+|+.|.+||..|+
T Consensus 148 P~iV~iDs~Gn~ly~ 162 (162)
T PRK08395 148 PLLVAIDSKGRSLYR 162 (162)
T ss_pred cEEEEEeCCCCcccC
Confidence 679999999999885
Done!