Query psy291
Match_columns 149
No_of_seqs 102 out of 520
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 20:43:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy291.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/291hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d3b_B Protein (small nuclear 27.0 22 0.00074 23.8 1.1 20 40-59 27-46 (91)
2 3s6n_G Small nuclear ribonucle 22.8 33 0.0011 22.2 1.4 22 39-60 26-47 (76)
3 1uhr_A SWI/SNF related, matrix 22.7 50 0.0017 22.5 2.3 21 3-23 17-43 (93)
4 1v32_A AT5G08430, hypothetical 22.1 47 0.0016 23.3 2.1 13 11-23 39-51 (101)
5 3k6g_D Telomeric repeat-bindin 21.8 86 0.0029 18.9 2.9 26 8-33 9-34 (42)
6 1h64_1 SnRNP SM-like protein; 21.4 37 0.0013 21.7 1.4 23 38-60 25-47 (75)
7 3bw1_A SMX4 protein, U6 snRNA- 19.1 43 0.0015 22.8 1.4 20 39-58 32-51 (96)
8 1i4k_A Putative snRNP SM-like 18.8 45 0.0016 21.4 1.4 23 37-59 24-46 (77)
9 1ylx_A Hypothetical protein AP 18.7 1.7E+02 0.0059 20.8 4.4 47 2-57 1-47 (103)
10 1th7_A SnRNP-2, small nuclear 18.5 46 0.0016 21.7 1.4 24 37-60 29-52 (81)
No 1
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=27.05 E-value=22 Score=23.76 Aligned_cols=20 Identities=15% Similarity=0.147 Sum_probs=16.4
Q ss_pred ccCeEEeeeCCCCEEeecCC
Q psy291 40 KFGKYVGIDQFGNKYYENPR 59 (149)
Q Consensus 40 k~g~lVG~D~~GNkYYE~~~ 59 (149)
-.|+|+|.|++.|---++-.
T Consensus 27 ~~G~L~~~D~~mNlvL~d~~ 46 (91)
T 1d3b_B 27 FIGTFKAFDKHMNLILCDCD 46 (91)
T ss_dssp EEEEEEECCTTCCEEEEEEE
T ss_pred EEEEEEEECCCCeEEecCEE
Confidence 46999999999998776643
No 2
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=22.81 E-value=33 Score=22.23 Aligned_cols=22 Identities=23% Similarity=0.117 Sum_probs=17.9
Q ss_pred cccCeEEeeeCCCCEEeecCCC
Q psy291 39 LKFGKYVGIDQFGNKYYENPRY 60 (149)
Q Consensus 39 ~k~g~lVG~D~~GNkYYE~~~~ 60 (149)
.-.|+|+|.|.+-|---++-.+
T Consensus 26 ~~~G~L~~~D~~mNlvL~~~~e 47 (76)
T 3s6n_G 26 HVQGILRGFDPFMNLVIDECVE 47 (76)
T ss_dssp EEEEEEEEECTTCCEEEEEEEE
T ss_pred EEEEEEEEECCcceEEEeceEE
Confidence 3469999999999998887643
No 3
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=22.70 E-value=50 Score=22.53 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=17.6
Q ss_pred chhhhhh------HHHHHHHHHHHHHh
Q psy291 3 KLKNFLG------INVLENLRKIYKEN 23 (149)
Q Consensus 3 ~~~~~~~------~~~~~~~~~~i~~~ 23 (149)
.||.++| -+++..+|..|+.+
T Consensus 17 ~La~~lG~~~~sr~evvk~lW~YIK~n 43 (93)
T 1uhr_A 17 RLARLLGIHTQTRPVIIQALWQYIKTH 43 (93)
T ss_dssp THHHHTCCSEEEHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCccCHHHHHHHHHHHHHhc
Confidence 4567777 58999999999999
No 4
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=22.09 E-value=47 Score=23.29 Aligned_cols=13 Identities=15% Similarity=0.332 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHh
Q psy291 11 NVLENLRKIYKEN 23 (149)
Q Consensus 11 ~~~~~~~~~i~~~ 23 (149)
+++..+|..||.+
T Consensus 39 eVvk~lW~YIK~n 51 (101)
T 1v32_A 39 DVSDTIAKYISKE 51 (101)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 8899999999999
No 5
>3k6g_D Telomeric repeat-binding factor 2; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=21.76 E-value=86 Score=18.94 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHhCcHHHHHHHH
Q psy291 8 LGINVLENLRKIYKENGGLKNCWKTL 33 (149)
Q Consensus 8 ~~~~~~~~~~~~i~~~~G~r~~l~~l 33 (149)
|||.+|+.+++.+-.-.-.-..|.+|
T Consensus 9 ~Gi~tLk~AFK~Ls~sqD~eAaF~KL 34 (42)
T 3k6g_D 9 IGMMTLKAAFKTLSGAQDSEAAFAKL 34 (42)
T ss_dssp CCHHHHHHHHHHHHCCTTHHHHHHHH
T ss_pred eeHHHHHHHHHHhccCCCcHHHHHhc
Confidence 68999999999888776666666554
No 6
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=21.37 E-value=37 Score=21.73 Aligned_cols=23 Identities=17% Similarity=0.096 Sum_probs=18.2
Q ss_pred ccccCeEEeeeCCCCEEeecCCC
Q psy291 38 DLKFGKYVGIDQFGNKYYENPRY 60 (149)
Q Consensus 38 ~~k~g~lVG~D~~GNkYYE~~~~ 60 (149)
..-.|+|+|.|.+-|---++-.+
T Consensus 25 ~~~~G~L~~~D~~mNlvL~d~~e 47 (75)
T 1h64_1 25 FEFRGRLIGYDIHLNVVLADAEM 47 (75)
T ss_dssp EEEEEEEEEECTTCCEEEEEEEE
T ss_pred CEEEEEEEEEeCCCCeEEeeEEE
Confidence 33469999999999998877643
No 7
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=19.11 E-value=43 Score=22.78 Aligned_cols=20 Identities=15% Similarity=0.160 Sum_probs=16.0
Q ss_pred cccCeEEeeeCCCCEEeecC
Q psy291 39 LKFGKYVGIDQFGNKYYENP 58 (149)
Q Consensus 39 ~k~g~lVG~D~~GNkYYE~~ 58 (149)
.-.|+|+|.|++-|---++-
T Consensus 32 ~~~G~L~~fD~~mNlVL~d~ 51 (96)
T 3bw1_A 32 TLVGTLQAFDSHCNIVLSDA 51 (96)
T ss_dssp EEEEEEEEECTTCCEEEEEE
T ss_pred EEEEEEEEECCCCcEEEcCE
Confidence 34699999999999776654
No 8
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=18.81 E-value=45 Score=21.36 Aligned_cols=23 Identities=17% Similarity=0.004 Sum_probs=18.1
Q ss_pred cccccCeEEeeeCCCCEEeecCC
Q psy291 37 DDLKFGKYVGIDQFGNKYYENPR 59 (149)
Q Consensus 37 ~~~k~g~lVG~D~~GNkYYE~~~ 59 (149)
+..-.|+|+|.|.+-|---++-.
T Consensus 24 g~~~~G~L~~~D~~mNlvL~d~~ 46 (77)
T 1i4k_A 24 GREFRGTLDGYDIHMNLVLLDAE 46 (77)
T ss_dssp SCEEEEEEEEECTTCCEEEEEEE
T ss_pred CCEEEEEEEEEcCCCCeEEeeEE
Confidence 33346999999999998887654
No 9
>1ylx_A Hypothetical protein APC35702; dimer, structural genomics, PSI, protein structure initiative; 1.60A {Geobacillus stearothermophilus} SCOP: d.82.5.1
Probab=18.72 E-value=1.7e+02 Score=20.76 Aligned_cols=47 Identities=21% Similarity=0.176 Sum_probs=22.2
Q ss_pred cchhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHhhcccccCeEEeeeCCCCEEeec
Q psy291 2 SKLKNFLGINVLENLRKIYKENGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYEN 57 (149)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~G~r~~l~~l~r~~~~k~g~lVG~D~~GNkYYE~ 57 (149)
|.|+.|++-.++.+-+.. ....+..-|.+... |.+ =+.-.||+||--
T Consensus 1 ~~~Mef~~Re~ii~el~~------~~~~~l~~Ygld~v--gif-EEeGegn~YY~G 47 (103)
T 1ylx_A 1 SNAMEFAPRSVVIEEFID------TLEPMMEAYGLDQV--GIF-EEHGEGNRYYVG 47 (103)
T ss_dssp ---CCCBCHHHHHHHHHH------HHHHHHHHHTCSCE--EEE-EEECSTTEEEEE
T ss_pred CchhhhccHHHHHHHHHH------HHHHHHHHhCCcce--eee-eecCCCceEEEE
Confidence 457777765555544432 11222233344333 222 345679999963
No 10
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=18.50 E-value=46 Score=21.68 Aligned_cols=24 Identities=17% Similarity=0.041 Sum_probs=18.6
Q ss_pred cccccCeEEeeeCCCCEEeecCCC
Q psy291 37 DDLKFGKYVGIDQFGNKYYENPRY 60 (149)
Q Consensus 37 ~~~k~g~lVG~D~~GNkYYE~~~~ 60 (149)
+..-.|+|+|.|.+-|---++-.+
T Consensus 29 g~~~~G~L~~~D~~mNlvL~d~~e 52 (81)
T 1th7_A 29 NKEVRGMLRSYDQHMNLVLSDSEE 52 (81)
T ss_dssp TEEEEEEEEEECTTCCEEEEEEEE
T ss_pred CcEEEEEEEEEcCCCCEEEccEEE
Confidence 334479999999999988876643
Done!